Citrus Sinensis ID: 040584
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | 2.2.26 [Sep-21-2011] | |||||||
| O65781 | 350 | UDP-glucose 4-epimerase G | N/A | no | 0.997 | 0.988 | 0.816 | 1e-170 | |
| Q9SN58 | 351 | UDP-glucose 4-epimerase 2 | yes | no | 1.0 | 0.988 | 0.795 | 1e-167 | |
| Q9T0A7 | 350 | UDP-glucose 4-epimerase 3 | no | no | 0.971 | 0.962 | 0.804 | 1e-163 | |
| Q42605 | 351 | UDP-glucose 4-epimerase 1 | no | no | 0.979 | 0.968 | 0.664 | 1e-134 | |
| Q43070 | 350 | UDP-glucose 4-epimerase O | N/A | no | 0.976 | 0.968 | 0.660 | 1e-134 | |
| O65780 | 354 | UDP-glucose 4-epimerase G | N/A | no | 0.976 | 0.957 | 0.649 | 1e-130 | |
| P55180 | 339 | UDP-glucose 4-epimerase O | yes | no | 0.962 | 0.985 | 0.598 | 1e-115 | |
| Q8R059 | 347 | UDP-glucose 4-epimerase O | yes | no | 0.962 | 0.962 | 0.592 | 1e-113 | |
| Q14376 | 348 | UDP-glucose 4-epimerase O | yes | no | 0.968 | 0.965 | 0.591 | 1e-112 | |
| Q5R8D0 | 348 | UDP-glucose 4-epimerase O | yes | no | 0.968 | 0.965 | 0.591 | 1e-112 |
| >sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 596 bits (1536), Expect = e-170, Method: Compositional matrix adjust.
Identities = 284/348 (81%), Positives = 311/348 (89%), Gaps = 2/348 (0%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
++ +LV GG GYIGSHTVLQLLLGG+K VVVDNLDN+SE A+ +VKELAG N++FHK
Sbjct: 3 SQTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSETAIHRVKELAGKFAGNLSFHK 62
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
LDLRD+ ALE +F+ TKFD+VIHFAGLKAVGESVQKPL Y+DNNL GTI L EVMAAHGC
Sbjct: 63 LDLRDRDALEKIFSSTKFDSVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGC 122
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
K LVFSSSAT YG PK VPCTEEFPL A NPYGR+KL IEEICRD++R++ EWKIILLRY
Sbjct: 123 KKLVFSSSATVYGLPKEVPCTEEFPLSAANPYGRTKLIIEEICRDIYRAEQEWKIILLRY 182
Query: 182 FNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
FNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRPALTVFG DY+T DGT VRDYIHVV
Sbjct: 183 FNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYTTSDGTGVRDYIHVV 242
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDA 300
DLADGHIAALRKL+DPK+GCEVYNLGTGKGTSVLEMV AFE+ASGKKIPLV +GRRPGDA
Sbjct: 243 DLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVMAGRRPGDA 302
Query: 301 EIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY-ESPNSTN 347
E+VYAST KAERELNWKAKYGIDEMCRDQWNWASKNPYGY S +S+N
Sbjct: 303 EVVYASTNKAERELNWKAKYGIDEMCRDQWNWASKNPYGYGGSEDSSN 350
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Cyamopsis tetragonoloba (taxid: 3832) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 2 |
| >sp|Q9SN58|GALE2_ARATH UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 587 bits (1512), Expect = e-167, Method: Compositional matrix adjust.
Identities = 277/348 (79%), Positives = 310/348 (89%), Gaps = 1/348 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MA+N+LV GG GYIGSHTVLQLLLGGY VVVDNLDN+S +++ +VK+LA G ++FH
Sbjct: 2 MARNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFH 61
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DLRD++ALE +F+ TKFDAVIHFAGLKAVGESV+KPL Y++NNL GTITLLEVMA HG
Sbjct: 62 QVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHG 121
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CKNLVFSSSAT YG PK VPCTEEFP+ A+NPYGR+KLFIEEICRDV+ SD EWKIILLR
Sbjct: 122 CKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLR 181
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRP LTVFG DY+TKDGT VRDYIHV
Sbjct: 182 YFNPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHV 241
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
+DLADGHIAALRKL+D K+GCEVYNLGTG GTSVLEMV AFEKASGKKIPLV +GRRPGD
Sbjct: 242 IDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGD 301
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AE+VYASTE+AE ELNWKAKYGI+EMCRD WNWAS NPYGY+S + N
Sbjct: 302 AEVVYASTERAESELNWKAKYGIEEMCRDLWNWASNNPYGYDSSSEDN 349
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Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9T0A7|GALE3_ARATH UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 272/338 (80%), Positives = 301/338 (89%), Gaps = 1/338 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MAK++LV GG GYIGSHTVLQLL GGY VVVDN DN+S ++ +VK+LAG GN ++FH
Sbjct: 1 MAKSVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DLRD+ ALE +F+ TKFDAVIHFAGLKAVGESV+KPL Y++NN+ GT+TLLEVMA +G
Sbjct: 61 QVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CKNLVFSSSAT YGWPK VPCTEE P+ A NPYGR+KLFIEEICRDVHRSDSEWKIILLR
Sbjct: 121 CKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDP G+PNNLMP+V QVAVGRRP LTVFGTDY TKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
+DLADGHIAALRKLDD K+ CEVYNLGTG GTSVLEMVAAFEKASGKKIPLV +GRRPGD
Sbjct: 241 MDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337
AE+VYASTEKAERELNWKAK GI+EMCRD WNWAS NP
Sbjct: 301 AEVVYASTEKAERELNWKAKNGIEEMCRDLWNWASNNP 338
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Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q42605|GALE1_ARATH UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 479 bits (1233), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/343 (66%), Positives = 275/343 (80%), Gaps = 3/343 (0%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQ-GNNMTFHK 61
+NILV GG G+IG+HTV+QLL G+K ++DN DN+ AV +V+EL G + F+
Sbjct: 7 QNILVTGGAGFIGTHTVVQLLKDGFKVSIIDNFDNSVIEAVDRVRELVGPDLSKKLDFNL 66
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DLR+K +E +F+ +FDAVIHFAGLKAVGESV+ P YFDNNL GTI L E MA + C
Sbjct: 67 GDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYETMAKYNC 126
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
K +VFSSSAT YG P+ +PC E+F L+AMNPYGR+KLF+EEI RD+ +++ EW+IILLRY
Sbjct: 127 KMMVFSSSATVYGQPEKIPCMEDFELKAMNPYGRTKLFLEEIARDIQKAEPEWRIILLRY 186
Query: 182 FNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
FNPVGAH SG GEDP+GIPNNLMP++ QVAVGR P L V+G DY T+DG+ VRDYIHV+
Sbjct: 187 FNPVGAHESGSIGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTEDGSAVRDYIHVM 246
Query: 241 DLADGHIAALRKL-DDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
DLADGHIAALRKL DPK+GC YNLGTG+GTSVLEMVAAFEKASGKKIP+ RR GD
Sbjct: 247 DLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRSGD 306
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 342
A VYASTEKAE+EL WKAKYG+DEMCRDQW WA+ NP+GY++
Sbjct: 307 ATAVYASTEKAEKELGWKAKYGVDEMCRDQWKWANNNPWGYQN 349
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Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q43070|GALE1_PEA UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 226/342 (66%), Positives = 270/342 (78%), Gaps = 3/342 (0%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQ-GNNMTFH 60
++ ILV G G+IG+HTV+QLL G+ ++DN DN+ AV +V+E+ G N+ F
Sbjct: 5 SQKILVTGSAGFIGTHTVVQLLNNGFNVSIIDNFDNSVMEAVERVREVVGSNLSQNLEFT 64
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
DLR+K LE +F+ +KFDAVIHFAGLKAVGESV+ P YFDNNL GTI L EVMA H
Sbjct: 65 LGDLRNKDDLEKLFSKSKFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYEVMAKHN 124
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK +VFSSSAT YG P+ +PC E+F LQAMNPYGR+KLF+EEI RD+ +++ EW+I+LLR
Sbjct: 125 CKKMVFSSSATVYGQPEKIPCVEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWRIVLLR 184
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAH SGK GEDPRGIPNNLMP++ QVAVGR P L V+G DY T+DG+ +RDYIHV
Sbjct: 185 YFNPVGAHESGKLGEDPRGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDGSAIRDYIHV 244
Query: 240 VDLADGHIAALRKL-DDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPG 298
+DLADGHIAALRKL +GC YNLGTG+G+SVLEMVAAFEKASGKKI L RRPG
Sbjct: 245 MDLADGHIAALRKLFTSENIGCTAYNLGTGRGSSVLEMVAAFEKASGKKIALKLCPRRPG 304
Query: 299 DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
DA VYAST KAE+EL WKAKYG++EMCRDQWNWA NP+GY
Sbjct: 305 DATEVYASTAKAEKELGWKAKYGVEEMCRDQWNWAKNNPWGY 346
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Pisum sativum (taxid: 3888) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|O65780|GALE1_CYATE UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/342 (64%), Positives = 266/342 (77%), Gaps = 3/342 (0%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-YQGNNMTFHK 61
+ ILV GG G+IGSHTV+QLL G+ ++DNL N+ AV +V+ L G +N+ FH
Sbjct: 10 ETILVTGGAGFIGSHTVVQLLKQGFHVSIIDNLYNSVIDAVHRVRLLVGPLLSSNLHFHH 69
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DLR+ L+++F+ TKFDAVIHFAGLK VGESV P Y+DNNL TI L +VM+ C
Sbjct: 70 GDLRNIHDLDILFSKTKFDAVIHFAGLKGVGESVLNPSNYYDNNLVATINLFQVMSKFNC 129
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
K LV SSSAT YG P +PC E+ L AMNPYGRSKLF+EE+ RD+ R+++EW+IILLRY
Sbjct: 130 KKLVISSSATVYGQPDQIPCVEDSNLHAMNPYGRSKLFVEEVARDIQRAEAEWRIILLRY 189
Query: 182 FNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
FNPVGAH SG+ GEDPRG+PNNLMP++ QVAV R P L ++G DY TKDGT +RDYIHV+
Sbjct: 190 FNPVGAHESGQIGEDPRGLPNNLMPYIQQVAVARLPELNIYGHDYPTKDGTAIRDYIHVM 249
Query: 241 DLADGHIAALRKL-DDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
DLADGHIAALRKL +GC YNLGTG+GTSVLEMVAAFEKASGKKIP+ RRPGD
Sbjct: 250 DLADGHIAALRKLFTTDNIGCTAYNLGTGRGTSVLEMVAAFEKASGKKIPIKMCPRRPGD 309
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
A VYASTEKAE+EL WKAKYG++EMCRDQW WAS NP+GY+
Sbjct: 310 ATAVYASTEKAEKELGWKAKYGVEEMCRDQWKWASNNPWGYQ 351
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Cyamopsis tetragonoloba (taxid: 3832) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/339 (59%), Positives = 251/339 (74%), Gaps = 5/339 (1%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
ILV GG GYIGSHT ++LL GY+ VV+DNL N+S A+ +VKE+ G ++TF++ DL
Sbjct: 3 ILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITG---KDLTFYEADL 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
D+ A++ VFA + +AVIHFAGLKAVGESV PL Y+ NNLTGT L E M +G K +
Sbjct: 60 LDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKI 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184
VFSSSAT YG P+ P TE+FPL A NPYG++KL +E+I RD+H +D+EW + LLRYFNP
Sbjct: 120 VFSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNP 179
Query: 185 VGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
GAHPSG+ GEDP GIPNNLMP+V QVAVG+ L+VFG DY TKDGT VRDYIHVVDLA
Sbjct: 180 FGAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLA 239
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIV 303
+GH+ AL K+ + G + YNLGTG G SVLEMV AFEK SGK++P + RRPGD
Sbjct: 240 EGHVKALEKVLN-STGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATC 298
Query: 304 YASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 342
+A KA+REL W+AK G++EMC D W W S N GY+S
Sbjct: 299 FADPAKAKRELGWEAKRGLEEMCADSWRWQSSNVNGYKS 337
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Bacillus subtilis (strain 168) (taxid: 224308) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q8R059|GALE_MOUSE UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/346 (59%), Positives = 247/346 (71%), Gaps = 12/346 (3%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGYQGNN 56
+ +LV GG GYIGSHTVL+LL GY VV+DN NA ++ +V+EL G +
Sbjct: 2 EKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNAIRGEDSMPESLRRVQELTG---RS 58
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
+ F ++D+ D+AAL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE+M
Sbjct: 59 VEFEEMDILDQAALQHLFKKHSFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 118
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWK 175
AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ R+D+ W
Sbjct: 119 RAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCRADTAWN 178
Query: 176 IILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234
+LLRYFNP+GAH SG+ GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY+T+DGT VR
Sbjct: 179 AVLLRYFNPIGAHASGRIGEDPQGIPNNLMPYVSQVAIGRREALNVFGDDYATEDGTGVR 238
Query: 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG 294
DYIHVVDLA GHIAAL+KL + + GC YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 239 DYIHVVDLAKGHIAALKKLKE-QCGCRTYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA 297
Query: 295 RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
RR GD YA+ A EL W A G+D MC D W W +NP G+
Sbjct: 298 RREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 343
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Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine. Mus musculus (taxid: 10090) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q14376|GALE_HUMAN UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/348 (59%), Positives = 246/348 (70%), Gaps = 12/348 (3%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGYQG 54
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA ++ +V+EL G
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--- 57
Query: 55 NNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE 114
++ F ++D+ D+ AL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE
Sbjct: 58 RSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLE 117
Query: 115 VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSE 173
+M AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKT 177
Query: 174 WKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
W +LLRYFNP GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
VRDYIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
RR GD YA+ A+ EL W A G+D MC D W W +NP G+
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
|
Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine. Homo sapiens (taxid: 9606) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q5R8D0|GALE_PONAB UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/348 (59%), Positives = 245/348 (70%), Gaps = 12/348 (3%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE------IAVAKVKELAGYQG 54
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA ++ +V+EL G
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--- 57
Query: 55 NNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE 114
++ F ++D+ D+ AL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE
Sbjct: 58 RSVEFEEMDILDQGALQRLFKKHSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLE 117
Query: 115 VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSE 173
+M AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKT 177
Query: 174 WKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
W +LLRYFNP GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
VRDYIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
RR GD YA+ A EL W A G+D MC D W W +NP G+
Sbjct: 297 VARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
|
Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine. Pongo abelii (taxid: 9601) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| 449462531 | 349 | PREDICTED: UDP-glucose 4-epimerase GEPI4 | 0.994 | 0.988 | 0.858 | 1e-174 | |
| 449452214 | 348 | PREDICTED: UDP-glucose 4-epimerase GEPI4 | 1.0 | 0.997 | 0.839 | 1e-174 | |
| 359473926 | 574 | PREDICTED: UDP-glucose 4-epimerase GEPI4 | 1.0 | 0.604 | 0.841 | 1e-174 | |
| 449506178 | 349 | PREDICTED: UDP-glucose 4-epimerase GEPI4 | 0.994 | 0.988 | 0.855 | 1e-173 | |
| 297742344 | 348 | unnamed protein product [Vitis vinifera] | 1.0 | 0.997 | 0.841 | 1e-172 | |
| 224058243 | 348 | predicted protein [Populus trichocarpa] | 1.0 | 0.997 | 0.844 | 1e-171 | |
| 37781556 | 362 | UDP-glucose 4-epimerase [Solanum tuberos | 0.997 | 0.955 | 0.830 | 1e-171 | |
| 357481391 | 392 | UDP-glucose 4-epimerase [Medicago trunca | 0.994 | 0.880 | 0.829 | 1e-171 | |
| 118486940 | 348 | unknown [Populus trichocarpa] | 1.0 | 0.997 | 0.839 | 1e-170 | |
| 217072660 | 392 | unknown [Medicago truncatula] gi|3885140 | 0.994 | 0.880 | 0.823 | 1e-170 |
| >gi|449462531|ref|XP_004148994.1| PREDICTED: UDP-glucose 4-epimerase GEPI48-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/346 (85%), Positives = 315/346 (91%), Gaps = 1/346 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MAK+ILV GG GYIGSHTVLQLLLGGY+ V+VDNLDN+SEIAV +VKELAG G N++FH
Sbjct: 3 MAKSILVTGGAGYIGSHTVLQLLLGGYRAVIVDNLDNSSEIAVRRVKELAGDLGKNLSFH 62
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
KLDLRDK ALE VFA T F+AVIHFAGLKAVGESVQKPL Y+DNNL GTITLLEVMAAHG
Sbjct: 63 KLDLRDKRALEKVFASTPFEAVIHFAGLKAVGESVQKPLLYYDNNLVGTITLLEVMAAHG 122
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KL IEEICRD++RSDSEWKIILLR
Sbjct: 123 CKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLLIEEICRDIYRSDSEWKIILLR 182
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRPALTV+GTDYSTKDGT VRDYIHV
Sbjct: 183 YFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVYGTDYSTKDGTGVRDYIHV 242
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHIAALRKLD +GCEVYNLGTGKGTSVLEMV+AFEKASGKKIPLV S RRPGD
Sbjct: 243 VDLADGHIAALRKLDAAGIGCEVYNLGTGKGTSVLEMVSAFEKASGKKIPLVTSARRPGD 302
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNS 345
AEIVYAST KAE+ELNWKAKYGID+MC+DQWNWASKNPYGYE P S
Sbjct: 303 AEIVYASTYKAEKELNWKAKYGIDDMCKDQWNWASKNPYGYEPPKS 348
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452214|ref|XP_004143855.1| PREDICTED: UDP-glucose 4-epimerase GEPI48-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/348 (83%), Positives = 316/348 (90%), Gaps = 1/348 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MAK+ILV GG GYIGSHTVLQLLLGGY V+VDNLDN+SEIA+ +V++LAG G N+TFH
Sbjct: 1 MAKSILVTGGAGYIGSHTVLQLLLGGYNAVIVDNLDNSSEIAIRRVRDLAGDLGKNLTFH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
KLDLRDK ALE VFA TKFDAVIHFAGLKAVGESVQKPL Y+DNNL GTI L EVMA+HG
Sbjct: 61 KLDLRDKPALEKVFASTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMASHG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KLFIEEICRD++RSDS+WKIILLR
Sbjct: 121 CKKLVFSSSATVYGWPKTVPCTEEFPLSATNPYGRTKLFIEEICRDIYRSDSDWKIILLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRPALTVFG+DYSTKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGSDYSTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHIAALRK+DDP +GCEVYNLGTGKGTSVLEMV+AFEKASGKKIPLV + RRPGD
Sbjct: 241 VDLADGHIAALRKVDDPSIGCEVYNLGTGKGTSVLEMVSAFEKASGKKIPLVMADRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AE+VYA T+KAE+EL WKAKYGI+EMCRDQWNWASKNPYGYE+ S N
Sbjct: 301 AEVVYAETDKAEKELKWKAKYGIEEMCRDQWNWASKNPYGYEASASKN 348
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473926|ref|XP_002268779.2| PREDICTED: UDP-glucose 4-epimerase GEPI48 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/348 (84%), Positives = 315/348 (90%), Gaps = 1/348 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MA+ ILV GG GYIGSHTVLQLLLGG++ VVVDNLDN+SEI++ +VK+LA G+N+ FH
Sbjct: 227 MAQTILVTGGAGYIGSHTVLQLLLGGFRAVVVDNLDNSSEISIHRVKKLAAEFGDNLLFH 286
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
KLDLRDK ALE +FA T FDAVIHFAGLKAVGESVQKPL YFDNNL GTITLLEVMAAHG
Sbjct: 287 KLDLRDKPALEQLFASTNFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHG 346
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KLFIE+ICRD+HRSDSEWKI+LLR
Sbjct: 347 CKKLVFSSSATVYGWPKEVPCTEEFPLCATNPYGRTKLFIEDICRDIHRSDSEWKIVLLR 406
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRPALTVFG+DYSTKDGT VRDYIHV
Sbjct: 407 YFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGSDYSTKDGTGVRDYIHV 466
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHIAAL KL + ++GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV GRRPGD
Sbjct: 467 VDLADGHIAALHKLLNSEIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMDGRRPGD 526
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AEIVYAST KAE+ELNWKAKYGI EMCRDQWNWASKNPYGYES +T+
Sbjct: 527 AEIVYASTTKAEKELNWKAKYGISEMCRDQWNWASKNPYGYESSPTTD 574
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449506178|ref|XP_004162675.1| PREDICTED: UDP-glucose 4-epimerase GEPI48-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 296/346 (85%), Positives = 314/346 (90%), Gaps = 1/346 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MAK+ILV GG GYIGSHTVLQLLLGGY+ V+VDNLDN+SEIAV +VKELAG G N++FH
Sbjct: 3 MAKSILVTGGAGYIGSHTVLQLLLGGYRAVIVDNLDNSSEIAVRRVKELAGDLGKNLSFH 62
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
KLDLRDK ALE VFA T F+AVIHFAGLKAVGESVQKPL Y+DNNL GTITLLEVMAAHG
Sbjct: 63 KLDLRDKRALEKVFASTPFEAVIHFAGLKAVGESVQKPLLYYDNNLVGTITLLEVMAAHG 122
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSA YGWPK VPCTEEFPL A NPYGR+KL IEEICRD++RSDSEWKIILLR
Sbjct: 123 CKKLVFSSSAIVYGWPKEVPCTEEFPLSAANPYGRTKLLIEEICRDIYRSDSEWKIILLR 182
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRPALTV+GTDYSTKDGT VRDYIHV
Sbjct: 183 YFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVYGTDYSTKDGTGVRDYIHV 242
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHIAALRKLD +GCEVYNLGTGKGTSVLEMV+AFEKASGKKIPLV S RRPGD
Sbjct: 243 VDLADGHIAALRKLDAAGIGCEVYNLGTGKGTSVLEMVSAFEKASGKKIPLVTSARRPGD 302
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNS 345
AEIVYAST KAE+ELNWKAKYGID+MC+DQWNWASKNPYGYE P S
Sbjct: 303 AEIVYASTYKAEKELNWKAKYGIDDMCKDQWNWASKNPYGYEPPKS 348
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742344|emb|CBI34493.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/348 (84%), Positives = 315/348 (90%), Gaps = 1/348 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MA+ ILV GG GYIGSHTVLQLLLGG++ VVVDNLDN+SEI++ +VK+LA G+N+ FH
Sbjct: 1 MAQTILVTGGAGYIGSHTVLQLLLGGFRAVVVDNLDNSSEISIHRVKKLAAEFGDNLLFH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
KLDLRDK ALE +FA T FDAVIHFAGLKAVGESVQKPL YFDNNL GTITLLEVMAAHG
Sbjct: 61 KLDLRDKPALEQLFASTNFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTITLLEVMAAHG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KLFIE+ICRD+HRSDSEWKI+LLR
Sbjct: 121 CKKLVFSSSATVYGWPKEVPCTEEFPLCATNPYGRTKLFIEDICRDIHRSDSEWKIVLLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRPALTVFG+DYSTKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGSDYSTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHIAAL KL + ++GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV GRRPGD
Sbjct: 241 VDLADGHIAALHKLLNSEIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMDGRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AEIVYAST KAE+ELNWKAKYGI EMCRDQWNWASKNPYGYES +T+
Sbjct: 301 AEIVYASTTKAEKELNWKAKYGISEMCRDQWNWASKNPYGYESSPTTD 348
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058243|ref|XP_002299469.1| predicted protein [Populus trichocarpa] gi|222846727|gb|EEE84274.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/348 (84%), Positives = 313/348 (89%), Gaps = 1/348 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MA NILV GG GYIGSHTVLQLLLGGY TVVVDNLDNAS+IA+ +VKELAG G N+ FH
Sbjct: 1 MAYNILVTGGAGYIGSHTVLQLLLGGYNTVVVDNLDNASDIALKRVKELAGDFGKNLVFH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DLRDK ALE VFA TKFDAVIHFAGLKAVGES+QKPL YF+NNL GTITLLEVMAAHG
Sbjct: 61 QVDLRDKPALENVFAETKFDAVIHFAGLKAVGESMQKPLLYFNNNLIGTITLLEVMAAHG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KLFIEEICRD++ SDSEWKIILLR
Sbjct: 121 CKQLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMP+V QVAVGRRP LTVFGTDY TKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGYIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGTDYPTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHIAALRKL + +GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV + RRPGD
Sbjct: 241 VDLADGHIAALRKLSEANIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMADRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AE VYA+TEKAEREL+WKA YG+DEMCRDQWNWASKNPYGY SP+ TN
Sbjct: 301 AETVYAATEKAERELSWKANYGVDEMCRDQWNWASKNPYGYGSPDGTN 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37781556|gb|AAP42567.1| UDP-glucose 4-epimerase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/348 (83%), Positives = 315/348 (90%), Gaps = 2/348 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M+K+ILV GG GYIGSHTVLQLLLGGYKTVV+D+LDN+SEIAV +VKE+AG G+N++FH
Sbjct: 1 MSKSILVTGGAGYIGSHTVLQLLLGGYKTVVIDSLDNSSEIAVKRVKEIAGEYGSNLSFH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K+DLRDK A+E +F KFDAVIHFAGLKAVGESV+KPL Y+DNNL GTITLLE+MAAHG
Sbjct: 61 KVDLRDKPAVEEIFRSNKFDAVIHFAGLKAVGESVEKPLMYYDNNLIGTITLLEIMAAHG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPKVVPCTEEFPL A NPYGR+KLFIEEICRDV +DSEWKIILLR
Sbjct: 121 CKRLVFSSSATVYGWPKVVPCTEEFPLSAANPYGRTKLFIEEICRDVQNADSEWKIILLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG+ GEDPRGIPNNLMPFV QVAVGRR LTV+GTDY TKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGRIGEDPRGIPNNLMPFVQQVAVGRRKELTVYGTDYGTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
+DLADGHIAAL+KL DP +GCEVYNLGTGKGTSVLEMVAAFEKASGKKIP+V SGRRPGD
Sbjct: 241 MDLADGHIAALQKLSDPSIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPMVMSGRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AEIVYA+TEKAEREL WKAKYGI+EMCRDQWNWA KNPYGY NS N
Sbjct: 301 AEIVYAATEKAERELKWKAKYGIEEMCRDQWNWAKKNPYGYXR-NSQN 347
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481391|ref|XP_003610981.1| UDP-glucose 4-epimerase [Medicago truncatula] gi|355512316|gb|AES93939.1| UDP-glucose 4-epimerase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/346 (82%), Positives = 313/346 (90%), Gaps = 1/346 (0%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV GG GYIGSHTVLQLLLGG+KTV+VDNLDN+SE+AV +VKELA G N+ FHK+
Sbjct: 47 KTVLVTGGAGYIGSHTVLQLLLGGFKTVIVDNLDNSSEVAVRRVKELAAEFGKNLNFHKV 106
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DLRDKAALE +F+ TKFDAVIHFAG+KAVGESVQKPL Y++NNL GTITLLEVMAAHGCK
Sbjct: 107 DLRDKAALEQIFSSTKFDAVIHFAGMKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCK 166
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KL IEEICRDV+R+D +WKI+LLRYF
Sbjct: 167 KLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVNRADPDWKIMLLRYF 226
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
NPVGAHPSG GEDP GIPNNLMPF+ QVAVGRRPALTVFG DY T DGT VRDYIHVVD
Sbjct: 227 NPVGAHPSGYIGEDPHGIPNNLMPFIQQVAVGRRPALTVFGNDYKTVDGTGVRDYIHVVD 286
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
LADGHIAALRKL++ +GC+VYNLGTGKGTSVLEMV AFEKASGKKIPLVK+GRRPGDAE
Sbjct: 287 LADGHIAALRKLEEADIGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAE 346
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
IVYAST+KAEREL WKAKYGIDEMCRDQWNWASKNPYGY SP+STN
Sbjct: 347 IVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGSPDSTN 392
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486940|gb|ABK95303.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/348 (83%), Positives = 312/348 (89%), Gaps = 1/348 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MA NILV GG GYIGSHTVLQLLLGGY TVVVDNLDNAS+IA+ +VKELAG G N+ FH
Sbjct: 1 MAYNILVTGGAGYIGSHTVLQLLLGGYNTVVVDNLDNASDIALKRVKELAGDFGKNLVFH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DLRDK ALE VFA TKFDAVIHFAGLKAVGES+QKPL YF+NNL GTITLLEVMAAHG
Sbjct: 61 QVDLRDKPALENVFAETKFDAVIHFAGLKAVGESMQKPLLYFNNNLIGTITLLEVMAAHG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KLFIEEICRD++ SDSEWKI LLR
Sbjct: 121 CKQLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKITLLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMP+V QVAVGRRP LTVFGTDY TKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGYIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGTDYPTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHIAALRKL + +GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV + RRPGD
Sbjct: 241 VDLADGHIAALRKLSEANIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMADRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AE VYA+TEKAER+L+WKA YG+DEMCRDQWNWASKNPYGY SP+ TN
Sbjct: 301 AETVYAATEKAERDLSWKANYGVDEMCRDQWNWASKNPYGYGSPDGTN 348
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072660|gb|ACJ84690.1| unknown [Medicago truncatula] gi|388514093|gb|AFK45108.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/346 (82%), Positives = 311/346 (89%), Gaps = 1/346 (0%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV GG GYIGSHTVLQLLLGG+KTV+VDNLDN+SE+AV +VKELA G N+ FHK+
Sbjct: 47 KTVLVTGGAGYIGSHTVLQLLLGGFKTVIVDNLDNSSEVAVRRVKELAAEFGKNLNFHKV 106
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DLRDKAALE +F+ TKFDAVIHFAG+K VGESVQKPL Y++NNL GTITLLEVMAAHGCK
Sbjct: 107 DLRDKAALEQIFSSTKFDAVIHFAGMKVVGESVQKPLLYYNNNLIGTITLLEVMAAHGCK 166
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
LVFSSSAT YGWPK VPCTEEFPL A NPYGR+KL IEEICRDV+R+D +WKI+LLRYF
Sbjct: 167 KLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVNRADPDWKIMLLRYF 226
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
NPVGAHPSG GEDP GIPNNLMPF+ QVAVGRRPALTVFG DY T DGT VRDYIHVVD
Sbjct: 227 NPVGAHPSGYIGEDPHGIPNNLMPFIQQVAVGRRPALTVFGNDYKTVDGTGVRDYIHVVD 286
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
LADGHIAALRKL++ +GC+VYNLGTGKGTSVLEMV AFEKASGKKIPLVK+GRRPGDAE
Sbjct: 287 LADGHIAALRKLEEADIGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAE 346
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
IVYAST+KAEREL WKAKYGID MCRDQWNWASKNPYGY SP+STN
Sbjct: 347 IVYASTKKAERELKWKAKYGIDGMCRDQWNWASKNPYGYGSPDSTN 392
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 347 | ||||||
| TAIR|locus:2123466 | 351 | UGE5 "UDP-D-glucose/UDP-D-gala | 1.0 | 0.988 | 0.795 | 2.5e-152 | |
| TAIR|locus:2138121 | 350 | UGE2 "UDP-D-glucose/UDP-D-gala | 0.994 | 0.985 | 0.797 | 8.5e-152 | |
| TAIR|locus:2014235 | 348 | RHD1 "ROOT HAIR DEFECTIVE 1" [ | 0.997 | 0.994 | 0.778 | 2.7e-148 | |
| TAIR|locus:2015253 | 351 | UGE3 "UDP-D-glucose/UDP-D-gala | 0.976 | 0.965 | 0.669 | 5.5e-125 | |
| TAIR|locus:2010371 | 351 | UGE1 "UDP-D-glucose/UDP-D-gala | 0.979 | 0.968 | 0.664 | 6.3e-124 | |
| UNIPROTKB|I3LL84 | 348 | GALE "Uncharacterized protein" | 0.976 | 0.974 | 0.597 | 5.3e-104 | |
| MGI|MGI:1921496 | 347 | Gale "galactose-4-epimerase, U | 0.971 | 0.971 | 0.591 | 6.7e-104 | |
| TIGR_CMR|BA_5700 | 338 | BA_5700 "UDP-glucose 4-epimera | 0.959 | 0.985 | 0.585 | 1.8e-103 | |
| UNIPROTKB|Q3T105 | 348 | GALE "Uncharacterized protein" | 0.976 | 0.974 | 0.591 | 2.3e-103 | |
| UNIPROTKB|Q4QRB0 | 348 | Gale "Gale protein" [Rattus no | 0.976 | 0.974 | 0.582 | 2.3e-103 |
| TAIR|locus:2123466 UGE5 "UDP-D-glucose/UDP-D-galactose 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
Identities = 277/348 (79%), Positives = 310/348 (89%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MA+N+LV GG GYIGSHTVLQLLLGGY VVVDNLDN+S +++ +VK+LA G ++FH
Sbjct: 2 MARNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFH 61
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DLRD++ALE +F+ TKFDAVIHFAGLKAVGESV+KPL Y++NNL GTITLLEVMA HG
Sbjct: 62 QVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHG 121
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CKNLVFSSSAT YG PK VPCTEEFP+ A+NPYGR+KLFIEEICRDV+ SD EWKIILLR
Sbjct: 122 CKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLR 181
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDPRGIPNNLMPFV QVAVGRRP LTVFG DY+TKDGT VRDYIHV
Sbjct: 182 YFNPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHV 241
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
+DLADGHIAALRKL+D K+GCEVYNLGTG GTSVLEMV AFEKASGKKIPLV +GRRPGD
Sbjct: 242 IDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKKIPLVIAGRRPGD 301
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
AE+VYASTE+AE ELNWKAKYGI+EMCRD WNWAS NPYGY+S + N
Sbjct: 302 AEVVYASTERAESELNWKAKYGIEEMCRDLWNWASNNPYGYDSSSEDN 349
|
|
| TAIR|locus:2138121 UGE2 "UDP-D-glucose/UDP-D-galactose 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1481 (526.4 bits), Expect = 8.5e-152, P = 8.5e-152
Identities = 276/346 (79%), Positives = 307/346 (88%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
MAK++LV GG GYIGSHTVLQLL GGY VVVDN DN+S ++ +VK+LAG GN ++FH
Sbjct: 1 MAKSVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DLRD+ ALE +F+ TKFDAVIHFAGLKAVGESV+KPL Y++NN+ GT+TLLEVMA +G
Sbjct: 61 QVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CKNLVFSSSAT YGWPK VPCTEE P+ A NPYGR+KLFIEEICRDVHRSDSEWKIILLR
Sbjct: 121 CKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG GEDP G+PNNLMP+V QVAVGRRP LTVFGTDY TKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
+DLADGHIAALRKLDD K+ CEVYNLGTG GTSVLEMVAAFEKASGKKIPLV +GRRPGD
Sbjct: 241 MDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKKIPLVMAGRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNS 345
AE+VYASTEKAERELNWKAK GI+EMCRD WNWAS NPYGY S ++
Sbjct: 301 AEVVYASTEKAERELNWKAKNGIEEMCRDLWNWASNNPYGYNSSSN 346
|
|
| TAIR|locus:2014235 RHD1 "ROOT HAIR DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 271/348 (77%), Positives = 302/348 (86%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M NILV GG GYIGSHTVLQLLLGGY TVV+DNLDN+S +++ +VK+LAG G N+T H
Sbjct: 1 MVGNILVTGGAGYIGSHTVLQLLLGGYNTVVIDNLDNSSLVSIQRVKDLAGDHGQNLTVH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DLRDK ALE VF+ TKFDAV+HFAGLKAVGESV KPL Y++NNL TITLLEVMAAHG
Sbjct: 61 QVDLRDKPALEKVFSETKFDAVMHFAGLKAVGESVAKPLLYYNNNLIATITLLEVMAAHG 120
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YGWPK VPCTEE PL M+PYGR+KLFIE+ICRDV R D EW+II+LR
Sbjct: 121 CKKLVFSSSATVYGWPKEVPCTEESPLSGMSPYGRTKLFIEDICRDVQRGDPEWRIIMLR 180
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG+ GEDP G PNNLMP+V QV VGR P L ++GTDY+TKDGT VRDYIHV
Sbjct: 181 YFNPVGAHPSGRIGEDPCGTPNNLMPYVQQVVVGRLPNLKIYGTDYTTKDGTGVRDYIHV 240
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
VDLADGHI AL+KLDD ++GCEVYNLGTGKGT+VLEMV AFEKASG KIPLVK GRRPGD
Sbjct: 241 VDLADGHICALQKLDDTEIGCEVYNLGTGKGTTVLEMVDAFEKASGMKIPLVKVGRRPGD 300
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY-ESPNST 346
AE VYASTEKAERELNWKA +GI+EMCRDQWNWAS NP+GY SPNST
Sbjct: 301 AETVYASTEKAERELNWKANFGIEEMCRDQWNWASNNPFGYGSSPNST 348
|
|
| TAIR|locus:2015253 UGE3 "UDP-D-glucose/UDP-D-galactose 4-epimerase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
Identities = 229/342 (66%), Positives = 275/342 (80%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQ-GNNMTFHK 61
+NILV GG G+IG+HTV+QLL G+K ++DNLDN+ AV +V+EL G + F+
Sbjct: 7 QNILVTGGAGFIGTHTVVQLLNQGFKVTIIDNLDNSVVEAVHRVRELVGPDLSTKLEFNL 66
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DLR+K +E +F+ +FDAVIHFAGLKAVGESV P YFDNNL GTI L E MA + C
Sbjct: 67 GDLRNKGDIEKLFSNQRFDAVIHFAGLKAVGESVGNPRRYFDNNLVGTINLYETMAKYNC 126
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
K +VFSSSAT YG P++VPC E+F LQAMNPYGR+KLF+EEI RD+H ++ EWKIILLRY
Sbjct: 127 KMMVFSSSATVYGQPEIVPCVEDFELQAMNPYGRTKLFLEEIARDIHAAEPEWKIILLRY 186
Query: 182 FNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
FNPVGAH SG+ GEDP+GIPNNLMP++ QVAVGR P L VFG DY T DG+ VRDYIHV+
Sbjct: 187 FNPVGAHESGRIGEDPKGIPNNLMPYIQQVAVGRLPELNVFGHDYPTMDGSAVRDYIHVM 246
Query: 241 DLADGHIAALRKL-DDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
DLADGH+AAL KL D K+GC YNLGTG+GTSVLEMV++FEKASGKKIP+ RR GD
Sbjct: 247 DLADGHVAALNKLFSDSKIGCTAYNLGTGQGTSVLEMVSSFEKASGKKIPIKLCPRRAGD 306
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
A VYAST+KAE+EL WKAKYG+DEMCRDQWNWA+KNP+G++
Sbjct: 307 ATAVYASTQKAEKELGWKAKYGVDEMCRDQWNWANKNPWGFQ 348
|
|
| TAIR|locus:2010371 UGE1 "UDP-D-glucose/UDP-D-galactose 4-epimerase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
Identities = 228/343 (66%), Positives = 275/343 (80%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQ-GNNMTFHK 61
+NILV GG G+IG+HTV+QLL G+K ++DN DN+ AV +V+EL G + F+
Sbjct: 7 QNILVTGGAGFIGTHTVVQLLKDGFKVSIIDNFDNSVIEAVDRVRELVGPDLSKKLDFNL 66
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DLR+K +E +F+ +FDAVIHFAGLKAVGESV+ P YFDNNL GTI L E MA + C
Sbjct: 67 GDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYETMAKYNC 126
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
K +VFSSSAT YG P+ +PC E+F L+AMNPYGR+KLF+EEI RD+ +++ EW+IILLRY
Sbjct: 127 KMMVFSSSATVYGQPEKIPCMEDFELKAMNPYGRTKLFLEEIARDIQKAEPEWRIILLRY 186
Query: 182 FNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
FNPVGAH SG GEDP+GIPNNLMP++ QVAVGR P L V+G DY T+DG+ VRDYIHV+
Sbjct: 187 FNPVGAHESGSIGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTEDGSAVRDYIHVM 246
Query: 241 DLADGHIAALRKL-DDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
DLADGHIAALRKL DPK+GC YNLGTG+GTSVLEMVAAFEKASGKKIP+ RR GD
Sbjct: 247 DLADGHIAALRKLFADPKIGCTAYNLGTGQGTSVLEMVAAFEKASGKKIPIKLCPRRSGD 306
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 342
A VYASTEKAE+EL WKAKYG+DEMCRDQW WA+ NP+GY++
Sbjct: 307 ATAVYASTEKAEKELGWKAKYGVDEMCRDQWKWANNNPWGYQN 349
|
|
| UNIPROTKB|I3LL84 GALE "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 206/345 (59%), Positives = 245/345 (71%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQ---GNNM 57
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA + + L Q G ++
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNAIRGGSSMPESLRRVQELTGRSV 60
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
F ++D+ D+AAL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE+M
Sbjct: 61 EFEEMDILDQAALQRLFKKYHFVAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSDSEWKI 176
AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D W
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKAWNA 180
Query: 177 ILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+LLRYFNP+GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT VRD
Sbjct: 181 VLLRYFNPIGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 240
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
YIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP R
Sbjct: 241 YIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVRAMEKASGKKIPYKVVAR 299
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
R GD YA+ A +EL W A G+D MC D W W +NP G+
Sbjct: 300 REGDVAACYANPSLALKELGWTAALGLDRMCEDLWRWQKQNPSGF 344
|
|
| MGI|MGI:1921496 Gale "galactose-4-epimerase, UDP" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
Identities = 203/343 (59%), Positives = 247/343 (72%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA--SEIAVAK-VKELAGYQGNNMTF 59
+ +LV GG GYIGSHTVL+LL GY VV+DN NA E ++ + ++ + G ++ F
Sbjct: 2 EKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNAIRGEDSMPESLRRVQELTGRSVEF 61
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
++D+ D+AAL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE+M AH
Sbjct: 62 EEMDILDQAALQHLFKKHSFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAH 121
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSDSEWKIIL 178
G KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ R+D+ W +L
Sbjct: 122 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCRADTAWNAVL 181
Query: 179 LRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
LRYFNP+GAH SG+ GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY+T+DGT VRDYI
Sbjct: 182 LRYFNPIGAHASGRIGEDPQGIPNNLMPYVSQVAIGRREALNVFGDDYATEDGTGVRDYI 241
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP 297
HVVDLA GHIAAL+KL + + GC YNLGTG G SVL+MV A EKASGKKIP RR
Sbjct: 242 HVVDLAKGHIAALKKLKE-QCGCRTYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARRE 300
Query: 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
GD YA+ A EL W A G+D MC D W W +NP G+
Sbjct: 301 GDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 343
|
|
| TIGR_CMR|BA_5700 BA_5700 "UDP-glucose 4-epimerase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 198/338 (58%), Positives = 238/338 (70%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
IL+ GG GYIGSHT ++LL YK +VVDNL N+S ++ +VKE+ G Q F+K ++
Sbjct: 3 ILITGGAGYIGSHTCVELLNNNYKIIVVDNLSNSSIESLNRVKEITGKQ---FEFYKENV 59
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
++ + +F +AVIHFAG KAVGES PL Y+ NN+ I L +VM H KN
Sbjct: 60 LNREKMNEIFLENNIEAVIHFAGFKAVGESTTTPLAYYYNNIISAIVLCDVMQKHNVKNF 119
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184
+FSSSAT YG PK +P TEEFPL NPYG++KL IE+I RDV ++D EW I LLRYFNP
Sbjct: 120 IFSSSATVYGIPKTLPITEEFPLSVTNPYGQTKLMIEQIMRDVAKADDEWSIALLRYFNP 179
Query: 185 VGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
GAH SG+ GEDP GIPNNLMP+VTQVAVG+ L +FG DY TKDGT VRDYIHVVDLA
Sbjct: 180 FGAHQSGRIGEDPNGIPNNLMPYVTQVAVGKLKELNIFGNDYPTKDGTGVRDYIHVVDLA 239
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIV 303
GH+ AL K+ K G E YNLGTGKG SVLEMV AFEK SGKKIP GRRPGD I
Sbjct: 240 KGHVKALEKVLKTK-GIEAYNLGTGKGYSVLEMVKAFEKVSGKKIPYKVIGRRPGDVAIC 298
Query: 304 YASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
+A KA+REL W+A+YG++EMC D W W N GY+
Sbjct: 299 FADVSKAKRELGWEAEYGLEEMCVDSWRWQVNNKNGYQ 336
|
|
| UNIPROTKB|Q3T105 GALE "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
Identities = 204/345 (59%), Positives = 244/345 (70%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQ---GNNM 57
MA+ +LV GG GYIGSHTVL+LL GY +V+DN NA + + L Q G ++
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYSPMVIDNFHNAIRGGGSMPESLRRVQDLTGRSV 60
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
F ++D+ D+AAL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE+M
Sbjct: 61 EFEEMDILDQAALQRLFKKHSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMR 120
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSDSEWKI 176
AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D W
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKAWNA 180
Query: 177 ILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+LLRYFNP+GAH SG GEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGT VRD
Sbjct: 181 VLLRYFNPIGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREVLNVFGNDYDTEDGTGVRD 240
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
YIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP R
Sbjct: 241 YIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
R GD YA+ A +EL W A G+D MC D W W +NP G+
Sbjct: 300 REGDVAACYANPSLALKELGWSAALGLDRMCEDLWRWQKQNPSGF 344
|
|
| UNIPROTKB|Q4QRB0 Gale "Gale protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
Identities = 201/345 (58%), Positives = 249/345 (72%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA--SEIAVAK-VKELAGYQGNNM 57
M + +LV GG GYIGSHTVL+LL GY VV+DN N+ E ++ + ++ + G ++
Sbjct: 1 MEEKVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNSIRGEDSMPESLRRVQELTGRSV 60
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
F ++D+ D+AAL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE+M
Sbjct: 61 EFEEMDILDQAALQHLFKKHNFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMR 120
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSDSEWKI 176
AHG K+LVFSSSAT YG P+ +P E P NPYG+SK FIEE+ +D+ R+D+ W
Sbjct: 121 AHGVKSLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIQDLCRADTAWNA 180
Query: 177 ILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+LLRYFNP+GAH SG+ GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY+T+DGT VRD
Sbjct: 181 VLLRYFNPIGAHASGRIGEDPQGIPNNLMPYVSQVAIGRREALNVFGDDYATEDGTGVRD 240
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
YIHVVDLA GHIAAL+KL + + GC +YNLGTG G SVL+MV A EKASGKKIP R
Sbjct: 241 YIHVVDLAKGHIAALKKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
R GD YA+ A EL W A G+D MC D W W +NP G+
Sbjct: 300 REGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 344
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9KDV3 | GALE_BACHD | 5, ., 1, ., 3, ., 2 | 0.4173 | 0.9308 | 0.9670 | yes | no |
| Q59678 | GALE_PASHA | 5, ., 1, ., 3, ., 2 | 0.5014 | 0.9596 | 0.9852 | N/A | no |
| Q45291 | GALE_CORGL | 5, ., 1, ., 3, ., 2 | 0.3855 | 0.8991 | 0.9483 | yes | no |
| P56985 | GALE_NEIMB | 5, ., 1, ., 3, ., 2 | 0.4868 | 0.9654 | 0.9882 | yes | no |
| P55180 | GALE_BACSU | 5, ., 1, ., 3, ., 2 | 0.5988 | 0.9625 | 0.9852 | yes | no |
| P56997 | GALE_NEIMA | 5, ., 1, ., 3, ., 2 | 0.4956 | 0.9654 | 0.9882 | yes | no |
| P22715 | GALE_SALTY | 5, ., 1, ., 3, ., 2 | 0.5355 | 0.9567 | 0.9822 | yes | no |
| Q5R8D0 | GALE_PONAB | 5, ., 1, ., 3, ., 2 | 0.5919 | 0.9682 | 0.9655 | yes | no |
| P33119 | GALE_CORDI | 5, ., 1, ., 3, ., 2 | 0.3873 | 0.9020 | 0.9542 | yes | no |
| Q9W0P5 | GALE_DROME | 5, ., 1, ., 3, ., 2 | 0.5391 | 0.9596 | 0.9514 | yes | no |
| Q9CNY5 | GALE_PASMU | 5, ., 1, ., 3, ., 2 | 0.5236 | 0.9567 | 0.9822 | yes | no |
| Q05026 | GALE_NEIGO | 5, ., 1, ., 3, ., 2 | 0.4749 | 0.9596 | 0.9852 | yes | no |
| O65781 | GALE2_CYATE | 5, ., 1, ., 3, ., 2 | 0.8160 | 0.9971 | 0.9885 | N/A | no |
| O65780 | GALE1_CYATE | 5, ., 1, ., 3, ., 2 | 0.6491 | 0.9769 | 0.9576 | N/A | no |
| Q9T0A7 | GALE3_ARATH | 5, ., 1, ., 3, ., 2 | 0.8047 | 0.9711 | 0.9628 | no | no |
| Q9SN58 | GALE2_ARATH | 5, ., 1, ., 3, ., 2 | 0.7959 | 1.0 | 0.9886 | yes | no |
| Q8R059 | GALE_MOUSE | 5, ., 1, ., 3, ., 2 | 0.5924 | 0.9625 | 0.9625 | yes | no |
| Q9F7D4 | GALE_YERPE | 5, ., 1, ., 3, ., 2 | 0.5414 | 0.9567 | 0.9822 | yes | no |
| O84903 | GALE_LACCA | 5, ., 1, ., 3, ., 2 | 0.4489 | 0.9394 | 0.9848 | yes | no |
| P09147 | GALE_ECOLI | 5, ., 1, ., 3, ., 2 | 0.5236 | 0.9567 | 0.9822 | N/A | no |
| Q7WTB1 | GALE_LACHE | 5, ., 1, ., 3, ., 2 | 0.4082 | 0.9365 | 0.9848 | yes | no |
| P24325 | GALE_HAEIN | 5, ., 1, ., 3, ., 2 | 0.5147 | 0.9567 | 0.9822 | yes | no |
| Q43070 | GALE1_PEA | 5, ., 1, ., 3, ., 2 | 0.6608 | 0.9769 | 0.9685 | N/A | no |
| P35673 | GALE_ERWAM | 5, ., 1, ., 3, ., 2 | 0.5473 | 0.9567 | 0.9851 | yes | no |
| P26503 | EXOB_RHIME | 5, ., 1, ., 3, ., 2 | 0.4047 | 0.9308 | 0.9847 | yes | no |
| Q553X7 | GALE_DICDI | 5, ., 1, ., 3, ., 2 | 0.5727 | 0.9596 | 0.9680 | yes | no |
| Q56093 | GALE_SALTI | 5, ., 1, ., 3, ., 2 | 0.5384 | 0.9567 | 0.9822 | N/A | no |
| Q14376 | GALE_HUMAN | 5, ., 1, ., 3, ., 2 | 0.5919 | 0.9682 | 0.9655 | yes | no |
| P75517 | GALE_MYCPN | 5, ., 1, ., 3, ., 2 | 0.3633 | 0.8991 | 0.9230 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.1.3.2 | 0.994 |
| 3rd Layer | 5.1.3 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 347 | |||
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 0.0 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 0.0 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 1e-172 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 1e-156 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 1e-152 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 5e-72 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 3e-62 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 1e-54 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 6e-47 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 1e-46 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-41 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 4e-41 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-37 | |
| pfam13950 | 62 | pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase | 3e-36 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 9e-34 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 2e-32 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 2e-30 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-28 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 1e-27 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 4e-27 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 8e-27 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-26 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 4e-24 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 8e-20 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 2e-19 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 7e-19 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 1e-18 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 3e-18 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 1e-17 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 6e-17 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 9e-17 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 2e-16 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 3e-16 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 3e-16 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 1e-15 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 1e-15 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 2e-15 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 6e-15 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-14 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 7e-14 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 3e-13 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 3e-13 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 5e-13 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 1e-12 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 2e-12 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 6e-12 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 1e-11 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 5e-10 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 5e-10 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 2e-09 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 7e-09 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 2e-08 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 5e-08 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 1e-07 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 2e-07 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 2e-07 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 4e-07 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 5e-07 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 9e-07 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 1e-06 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 2e-06 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 2e-06 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 3e-06 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 5e-06 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 6e-06 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 6e-06 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 8e-06 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 1e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 2e-05 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 4e-05 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 7e-05 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 7e-05 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 8e-05 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 1e-04 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 2e-04 | |
| PLN02657 | 390 | PLN02657, PLN02657, 3,8-divinyl protochlorophyllid | 2e-04 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 2e-04 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-04 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 2e-04 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 3e-04 | |
| PLN00016 | 378 | PLN00016, PLN00016, RNA-binding protein; Provision | 6e-04 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 8e-04 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 8e-04 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 0.001 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 0.001 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 0.002 | |
| cd05259 | 282 | cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe | 0.003 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 0.004 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 732 bits (1892), Expect = 0.0
Identities = 282/349 (80%), Positives = 303/349 (86%), Gaps = 2/349 (0%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M + ILV GG GYIGSHTVLQLLL GYK VV+DNLDN+SE A+ +VKELAG G+N+ FH
Sbjct: 4 MGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH 63
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K+DLRDK ALE VFA T+FDAVIHFAGLKAVGESV KPL Y+DNNL GTI LLEVMA HG
Sbjct: 64 KVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG 123
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK LVFSSSAT YG P+ VPCTEEFPL A NPYGR+KLFIEEICRD+H SD EWKIILLR
Sbjct: 124 CKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHASDPEWKIILLR 183
Query: 181 YFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
YFNPVGAHPSG+ GEDP+GIPNNLMP+V QVAVGRRP LTVFG DY TKDGT VRDYIHV
Sbjct: 184 YFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHV 243
Query: 240 VDLADGHIAALRKL-DDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPG 298
+DLADGHIAALRKL DP +GCE YNLGTGKGTSVLEMVAAFEKASGKKIPL + RRPG
Sbjct: 244 MDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPG 303
Query: 299 DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPNSTN 347
DAE VYASTEKAE+EL WKAKYGIDEMCRDQWNWASKNPYGY S T+
Sbjct: 304 DAEEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYGYGSSPETS 352
|
Length = 352 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 530 bits (1368), Expect = 0.0
Identities = 191/330 (57%), Positives = 235/330 (71%), Gaps = 10/330 (3%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+LV GG GYIGSHTV++LL GY VV+DNL N A+ +++++ + F++ D
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHREALPRIEKI------RIEFYEGD 54
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+RD+AAL+ VFA K DAVIHFA LKAVGESVQKPL Y+DNN+ GT+ LLE M AHG KN
Sbjct: 55 IRDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVKN 114
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
VFSSSA YG P+ VP TEE PL NPYGR+KL +E+I RD+ ++ ++LRYFN
Sbjct: 115 FVFSSSAAVYGEPETVPITEEAPLNPTNPYGRTKLMVEQILRDLAKA-PGLNYVILRYFN 173
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
P GAHPSG GEDP+ IPNNL+P+V QVA+GRR L +FG DY T DGT VRDYIHVVDL
Sbjct: 174 PAGAHPSGLIGEDPQ-IPNNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYIHVVDL 232
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
AD H+ AL KL++ G E+YNLGTG+G SVLE+V AFEK SGK IP + RR GD
Sbjct: 233 ADAHVLALEKLEN-GGGSEIYNLGTGRGYSVLEVVEAFEKVSGKPIPYEIAPRRAGDPAS 291
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNW 332
+ A KA EL WK K +++MC D WNW
Sbjct: 292 LVADPSKAREELGWKPKRDLEDMCEDAWNW 321
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 481 bits (1240), Expect = e-172
Identities = 154/341 (45%), Positives = 214/341 (62%), Gaps = 15/341 (4%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+LV GG GYIGSHTV QLL G++ VV+DNL N +IA+ K++ F++
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ---------FKFYEG 51
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DL D+A L VF K DAV+HFA +VGESVQ PL Y+DNN+ GT+ L+E M G K
Sbjct: 52 DLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK 111
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+FSS+A YG P P +E PL +NPYGRSKL EEI RD +++ +K+++LRYF
Sbjct: 112 KFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANP-FKVVILRYF 170
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
N GA P G G+ G L+P + A+G+R L +FG DY TKDGT +RDYIHV D
Sbjct: 171 NVAGACPDGTLGQRYPGA-TLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDD 229
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
LAD H+ AL+ L + ++NLG+G G SVLE++ A +K +G+ IP+ + RR GD
Sbjct: 230 LADAHVLALKYLKEGGS-NNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPA 288
Query: 302 IVYASTEKAERELNWKAKY-GIDEMCRDQWNWAS-KNPYGY 340
I+ A + KA + L W+ Y ++++ +D W+W ++ GY
Sbjct: 289 ILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQRHGDGY 329
|
Length = 329 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 439 bits (1131), Expect = e-156
Identities = 179/335 (53%), Positives = 228/335 (68%), Gaps = 9/335 (2%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
ILV GG GYIGSHTV QLL G++ V++DNL N S A+ + + + +TF + D
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERIT-----PVTFVEGD 55
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
LRD+ L+ +F K DAVIHFAGL AVGESVQKPL Y+ NN+ GT+ LLE M G K
Sbjct: 56 LRDRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKK 115
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+FSSSA YG P +P +E+ PL +NPYGRSKL E+I RD+ ++D +W ++LRYFN
Sbjct: 116 FIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 184 PVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
GAHPSG GEDP GI +L+P+ QVAVG+R LT+FGTDY T DGT VRDYIHV+DL
Sbjct: 176 VAGAHPSGDIGEDPPGIT-HLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
AD H+AAL L + G VYNLG G+G SVLE++ AF+K SGK P+ + RRPGD
Sbjct: 235 ADAHLAALEYLLN-GGGSHVYNLGYGQGFSVLEVIEAFKKVSGKDFPVELAPRRPGDPAS 293
Query: 303 VYASTEKAERELNWKAKYG-IDEMCRDQWNWASKN 336
+ A K REL W+ KY ++E+ +D W W S+N
Sbjct: 294 LVADASKIRRELGWQPKYTDLEEIIKDAWRWESRN 328
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 431 bits (1111), Expect = e-152
Identities = 181/340 (53%), Positives = 233/340 (68%), Gaps = 6/340 (1%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+LV GG GYIGSHT +QLL G+ V++DNL N+ + ++ L G TF + D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHP---TFVEGD 58
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+R++A L + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 59 IRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 124 LVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
L+FSSSAT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYF
Sbjct: 119 LIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
NPVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+D
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
LADGH+AA+ KL + K G +YNLG G G+SVL++V AF KA GK + + RR GD
Sbjct: 239 LADGHVAAMEKLAN-KPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 298 AYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYP 337
|
Length = 338 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 5e-72
Identities = 109/330 (33%), Positives = 163/330 (49%), Gaps = 28/330 (8%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+LV GG G+IGSH V +LL G++ +V+DNL + + +VK N+ F + D
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVKP-------NVKFIEGD 53
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+RD +E F G D V H A +V S++ P+ + N+ GT+ LLE G K
Sbjct: 54 IRDDELVEFAFEGV--DYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKR 111
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
V++SS++ YG P +P E+ P ++PY SK E C+ V + LRYFN
Sbjct: 112 FVYASSSSVYGDPPYLPKDEDHPPNPLSPYAVSKYAGELYCQ-VFARLYGLPTVSLRYFN 170
Query: 184 PVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
G +DP G ++P F+ + G P T++G DG RD+ +V D+
Sbjct: 171 VY-----GPRQDPNGGYAAVIPIFIERALKGEPP--TIYG------DGEQTRDFTYVEDV 217
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
+ ++ A G EVYN+GTGK TSV E+ + GK++ V + RPGD
Sbjct: 218 VEANLLAATA----GAGGEVYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDVRH 273
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNW 332
A KA++ L W+ K +E R W
Sbjct: 274 SLADISKAKKLLGWEPKVSFEEGLRLTVEW 303
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 3e-62
Identities = 84/262 (32%), Positives = 129/262 (49%), Gaps = 29/262 (11%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
ILV GG G+IGSH V +LL GY+ +V+ + + +++ FH+ DL
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNTGRIR-----------FHEGDL 49
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
D ALE + A + DAVIH A VG S + P + N+ GT+ LLE G K
Sbjct: 50 TDPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRF 109
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184
VF+SS+ YG P TE+ PL ++PY +KL E + R+ + ++LR FN
Sbjct: 110 VFASSSEVYGDVADPPITEDTPLGPLSPYAAAKLAAERLVEAYARAY-GLRAVILRLFNV 168
Query: 185 VGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLAD 244
G +P +++P + + + +P + + G DGT RD+++V D+A
Sbjct: 169 YGPG------NPDPFVTHVIPALIRRILEGKP-ILLLG------DGTQRRDFLYVDDVAR 215
Query: 245 GHIAALRKLDDPKVGCEVYNLG 266
+ AL D E+YN+G
Sbjct: 216 AILLALEHPDGG----EIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-54
Identities = 105/344 (30%), Positives = 158/344 (45%), Gaps = 37/344 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
ILV GG G+IGSH V +LL G+ +D L + + ++ + F L
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLS-----------GVEFVVL 49
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESV-QKPLPYFDNNLTGTITLLEVMAAHGC 121
DL D+ ++ + G DAVIH A +V +S P + D N+ GT+ LLE A G
Sbjct: 50 DLTDRDLVDELAKGVP-DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGV 108
Query: 122 KNLVFSSSATA-YGWPKVVPCTEE-FPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
K VF+SS + YG P +P E+ P + +NPYG SKL E++ R R +++L
Sbjct: 109 KRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYG-LPVVIL 167
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
R FN G D + + ++ + + P + + G DG+ RD+++V
Sbjct: 168 RPFNVYGPG------DKPDLSSGVVSAFIRQLLKGEPIIVIGG------DGSQTRDFVYV 215
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKG-TSVLEMVAAFEKASGKKIPLVK---SGR 295
D+AD + AL D V+N+G+G +V E+ A +A G K PL+ GR
Sbjct: 216 DDVADALLLALENPDG-----GVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGR 270
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYG 339
R E KA L W+ K ++E D W K
Sbjct: 271 RGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKLEL 314
|
Length = 314 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 6e-47
Identities = 98/331 (29%), Positives = 154/331 (46%), Gaps = 32/331 (9%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+L++GG G+IGSH V LL G + V D E+ + V + K D
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPLGGVD-----------YIKGD 49
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
++A LE G D VIH A S + P+ N+ T+ LLE AA G
Sbjct: 50 YENRADLESALVGI--DTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGK 107
Query: 124 LVF-SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
++F SS T YG P+ +P +E P ++ YG SKL IE+ R +++ +LR
Sbjct: 108 IIFASSGGTVYGVPEQLPISESDPTLPISSYGISKLAIEKYLR-LYQYLYGLDYTVLRIS 166
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
NP G G+ P G + + ++ G + ++G DG +RDYI++ DL
Sbjct: 167 NPYG-----PGQRPDGKQGVIPIALNKILRGEP--IEIWG------DGESIRDYIYIDDL 213
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
+ +A LR K EV+N+G+G G S+ E++A EK +G+ + ++ + R D
Sbjct: 214 VEALMALLRS----KGLEEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVPK 269
Query: 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWA 333
+ +A EL W K +++ W W
Sbjct: 270 IVLDISRARAELGWSPKISLEDGLEKTWQWI 300
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-46
Identities = 81/262 (30%), Positives = 112/262 (42%), Gaps = 62/262 (23%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
ILV GG G+IGSH V +LL G++ VV+D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDR------------------------------ 30
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
D V+H A L V S P F+ N+ GT+ LLE G K
Sbjct: 31 --------------LDVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRF 76
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184
V++SSA+ YG P+ +P EE P + ++PYG SKL E + R S +++LR N
Sbjct: 77 VYASSASVYGSPEGLPEEEETPPRPLSPYGVSKLAAEHLLRSYGESY-GLPVVILRLANV 135
Query: 185 VGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLAD 244
G R + ++ + A+ +P LTVFG G RD+IHV D+
Sbjct: 136 YGPG-------QRPRLDGVVNDFIRRALEGKP-LTVFG------GGNQTRDFIHVDDVVR 181
Query: 245 GHIAALRKLDDPKVGCEVYNLG 266
+ AL P G VYN+G
Sbjct: 182 AILHALEN---PLEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-41
Identities = 99/345 (28%), Positives = 157/345 (45%), Gaps = 48/345 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAV--AKVKELAGYQGNNMTFH 60
ILV G G+IG H +LL G + V +DNL++ ++ + A+++ L F
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKS--GGFKFV 58
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K DL D+ AL +F +FDAVIH A V S++ P Y D+N+ G + LLE+ G
Sbjct: 59 KGDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFG 118
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
K+LV++SS++ YG +P +E+ + ++ Y +K E + L
Sbjct: 119 VKHLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHL-YGIPTTGL 177
Query: 180 RYFNPVGAHPSGKGEDPRGIPN-NLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
R+F G P G P+ L F + G+ + VF DG + RD+ +
Sbjct: 178 RFFTVYG---------PWGRPDMALFLFTKAILEGK--PIDVFN------DGNMSRDFTY 220
Query: 239 VVDLADGHIAALRK-----------LDDPKVGC---EVYNLGTGKGTSVLEMVAAFEKAS 284
+ D+ +G + AL DP VYN+G +++ + A EKA
Sbjct: 221 IDDIVEGVVRALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKAL 280
Query: 285 GKK-----IPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
GKK +P+ + GD YA K +R L +K K ++E
Sbjct: 281 GKKAKKNYLPM-----QKGDVPETYADISKLQRLLGYKPKTSLEE 320
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-41
Identities = 104/331 (31%), Positives = 140/331 (42%), Gaps = 40/331 (12%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE--IAVAKVKELAGYQGNNMTFHK 61
ILV GG G+IGSH V +LL G + VVVDNL + I + F K
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENK-------AFRFVK 53
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DL D A A D V H A V P + N+ T +LE M A+G
Sbjct: 54 RDLLDTADK---VAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGV 110
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRD-VHRSDSEWKIILLR 180
K +VF+SS+T YG KV+P E++P ++ YG SKL E + H + I R
Sbjct: 111 KRIVFASSSTVYGEAKVIPTPEDYPPLPISVYGASKLAAEALISAYAHLFGFQAWIF--R 168
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP-ALTVFGTDYSTKDGTVVRDYIHV 239
+ N VG PR + F+ ++ R P L V G DG + Y++V
Sbjct: 169 FANIVG---------PRSTHGVIYDFINKLK--RNPNELEVLG------DGRQRKSYLYV 211
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS-GRR-- 296
D D + A K G ++NLG SV E+ + G K S G R
Sbjct: 212 SDCVDAMLLAWEK---STEGVNIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGW 268
Query: 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCR 327
GD + EK + L WK +Y +E R
Sbjct: 269 KGDVPYMRLDIEKL-KALGWKPRYNSEEAVR 298
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-37
Identities = 109/345 (31%), Positives = 152/345 (44%), Gaps = 41/345 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIA-VAKVKELAGYQGNNMTF 59
ILV GG G+IGS+ V LL YK + +D L A + + V F
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSS-----SPRYRF 55
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
K D+ D ++ +F K DAVIHFA V S+ P P+ N+ GT TLLE +
Sbjct: 56 VKGDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARKY 115
Query: 120 GCKNLVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI-- 176
G K V S+ YG TE PL +PY SK + + R HR+ + +
Sbjct: 116 GVKRFVHISTDEVYGDLLDDGEFTETSPLAPTSPYSASKAAADLLVRAYHRT---YGLPV 172
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
++ R N G P P L+P F+ G+ L ++G DG VRD
Sbjct: 173 VITRCSNNYG---------PYQFPEKLIPLFILNALDGKP--LPIYG------DGLNVRD 215
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
+++V D A L K +VG E+YN+G G + LE+V + GK L+ +
Sbjct: 216 WLYVEDHARAIELVLEK---GRVG-EIYNIGGGNELTNLELVKLILELLGKDESLITYVK 271
Query: 296 -RPG-DAEIVYA-STEKAERELNWKAKYGIDEMCRDQWNWASKNP 337
RPG D YA + K REL W+ K +E R W +N
Sbjct: 272 DRPGHDRR--YAIDSSKIRRELGWRPKVSFEEGLRKTVRWYLENR 314
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|206121 pfam13950, Epimerase_Csub, UDP-glucose 4-epimerase C-term subunit | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 3e-36
Identities = 39/62 (62%), Positives = 44/62 (70%)
Query: 279 AFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338
AFEKASGKKIP RRPGD YA KAE+EL WKA+ G+++MCRD W W SKNP
Sbjct: 1 AFEKASGKKIPYEIVPRRPGDVAECYADPSKAEKELGWKAERGLEDMCRDSWRWQSKNPN 60
Query: 339 GY 340
GY
Sbjct: 61 GY 62
|
This domain is the very C-terminal subunit of UDP-glucose 4-epimerase. Length = 62 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 9e-34
Identities = 95/354 (26%), Positives = 155/354 (43%), Gaps = 44/354 (12%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLD 63
+L+ GG G+IGS+ L G++ + DNL S +A +K A + + F D
Sbjct: 3 VLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLK--ANREDGGVRFVHGD 60
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK- 122
+R++ LE +F D +IH A +V S P F+ N GT+ +LE H
Sbjct: 61 IRNRNDLEDLFED--IDLIIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPNA 118
Query: 123 NLVFSSSATAYG--------------W----PKVVPC--TEEFPL-QAMNPYGRSKLFIE 161
+F+S+ YG + P +E FPL + + YG SK +
Sbjct: 119 PFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAAD 178
Query: 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221
+ ++ R K ++ R G G ED +G + + AV +P LT+F
Sbjct: 179 QYVQEYGRI-FGLKTVVFRCGCLTGPRQFGT-ED-QGWVAYFL----KCAVTGKP-LTIF 230
Query: 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV--LEMVAA 279
G G VRD +H DL + ++ + D + EV+N+G G+ SV LE++A
Sbjct: 231 GY-----GGKQVRDVLHSADLVNLYLRQFQNPD--RRKGEVFNIGGGRENSVSLLELIAL 283
Query: 280 FEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWA 333
E+ +G+K+ K RPGD + K + + WK + E+ + + W
Sbjct: 284 CEEITGRKMESYKDENRPGDQIWYISDIRKIKEKPGWKPERDPREILAEIYAWI 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-32
Identities = 89/339 (26%), Positives = 138/339 (40%), Gaps = 42/339 (12%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
L+ G G GS+ LL GY+ V + +S ++ L + +T H D
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYE--VHGIVRRSSSFNTDRIDHLYI-NKDRITLHYGD 57
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK- 122
L D ++L + D + H A V S P + N GT+ LLE + G
Sbjct: 58 LTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDA 117
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+SS+ YG + +P +E P + +PY SKL+ + I R +R + R F
Sbjct: 118 RFYQASSSEEYGKVQELPQSETTPFRPRSPYAVSKLYADWITR-NYREAYGLFAVNGRLF 176
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVT-----QVA---VGRRPALTVFGTDYSTKDGTVVR 234
N H E PR FVT QVA G +P L + D R
Sbjct: 177 N----H-----EGPRRGET----FVTRKITRQVARIKAGLQPVLKLGNLD-------AKR 216
Query: 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMV-AAFEKASGKKIPLVK- 292
D+ D + + L++ +P + Y + TG+ SV E V AFE++ V+
Sbjct: 217 DWGDARDYVEAYWLLLQQ-GEP----DDYVIATGETHSVREFVELAFEESGLTGDIEVEI 271
Query: 293 -SGR-RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQ 329
RP + +++ KA EL WK + +E+ R+
Sbjct: 272 DPRYFRPTEVDLLLGDPSKAREELGWKPEVSFEELVREM 310
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-30
Identities = 99/350 (28%), Positives = 148/350 (42%), Gaps = 51/350 (14%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL- 62
N+LV G G+IGSH +LL G++ +D ++ + FH +
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNS-------FNSWGLLDNAVHDRFHFIS 53
Query: 63 -DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+RD A EV + K D V H A L A+ S PL Y + N+ GT+ +LE
Sbjct: 54 GDVRD--ASEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYR 111
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMN----PYGRSKLFIEEICRDVHRSDSEWKII 177
K +V +S++ YG + VP E+ PL +N PY SK + + RS +
Sbjct: 112 KRVVHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSF-GLPVT 170
Query: 178 LLRYFNPVGAHPSGKGEDPR-----GIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
++R FN G PR IP ++Q A+G+R L G DG+
Sbjct: 171 IIRPFNTYG---------PRQSARAVIPT----IISQRAIGQR--LINLG------DGSP 209
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
RD+ V D A G I L VG E+ N G+G+ S+ ++ L+
Sbjct: 210 TRDFNFVKDTARGFIDIL--DAIEAVG-EIINNGSGEEISIGNPAVELIVEELGEMVLIV 266
Query: 293 SGR----RPGDAEIV--YASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
RPG +E+ KA+R L W+ KY + + R+ W
Sbjct: 267 YDDHREYRPGYSEVERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWFKDQ 316
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 98/347 (28%), Positives = 145/347 (41%), Gaps = 49/347 (14%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGN-NMTF 59
ILV GG G+IGS+ V +L V +D L A ++ LA + + F
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAG-----NLENLADVEDSPRYRF 55
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
+ D+ D+ ++ +F + DAV+HFA V S+ P P+ N+ GT TLLE +
Sbjct: 56 VQGDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKY 115
Query: 120 GCK-NLVFSSSATAYG--WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
K S+ YG TE P +PY SK + + R R+
Sbjct: 116 WGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRT-YGLPA 174
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFV-TQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+ R N G P P L+P + +G+ L V+G DG +RD
Sbjct: 175 TITRCSNNYG---------PYQFPEKLIPLMIINALLGKP--LPVYG------DGLQIRD 217
Query: 236 YIHVVDLADGHIAALRK-LDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL---- 290
+++V D H A+ L K+G E YN+G G + LE+V + GK P
Sbjct: 218 WLYVED----HCRAIDLVLTKGKIG-ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDL 272
Query: 291 ---VKSGRRPG-DAEIVYA-STEKAERELNWKAKYGIDEMCRDQWNW 332
V+ RPG D YA K +REL W+ + + R +W
Sbjct: 273 ITFVED--RPGHDRR--YAIDASKIKRELGWRPQETFETGLRKTVDW 315
|
Length = 340 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-27
Identities = 81/286 (28%), Positives = 126/286 (44%), Gaps = 25/286 (8%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGS+ V L G +VVDNL N + ++A Y K D
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADY------IDKDD 55
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+D + K +A+ H E+ K + DNN T LL +
Sbjct: 56 FKD--WVRKGDENFKIEAIFHQGACSDTTETDGKYM--MDNNYQYTKELLHYCLEKKIR- 110
Query: 124 LVFSSSATAYG--WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
+++SSA YG E L+ +N YG SKL ++ R H + +++ LRY
Sbjct: 111 FIYASSAAVYGNGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARR-HGKEVLSQVVGLRY 169
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
FN G KG + +L Q+ G + L F + DG +RD+++V D
Sbjct: 170 FNVYGPREYHKG-RMASVVFHL---FNQIKAGEKVKL--FKSSDGYADGEQLRDFVYVKD 223
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK 287
+ L L++P V ++N+GTG+ S ++ +A KA GK+
Sbjct: 224 VVK---VNLFFLENPSVS-GIFNVGTGRARSFNDLASATFKALGKE 265
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-27
Identities = 88/335 (26%), Positives = 141/335 (42%), Gaps = 37/335 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K IL+ GG G++GSH +LL G++ + VDN + + L G+ N F +
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRNIEH---LIGHP--NFEFIRH 55
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ + LEV D + H A + P+ N+ GT+ +L + G +
Sbjct: 56 DVTEPLYLEV-------DQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGAR 108
Query: 123 NLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
++ +S++ YG P+V P E + P+ + Y K E +C HR +
Sbjct: 109 -VLLASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGV-DVR 166
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
+ R FN G P D R + N F+ Q G +TV+G DGT R +
Sbjct: 167 IARIFNTYG--PRMHPNDGRVVSN----FIVQALRGE--PITVYG------DGTQTRSFQ 212
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP 297
+V DL +G I L D NLG + ++LE+ +K +G K +V
Sbjct: 213 YVSDLVEGLI-RLMNSDYFG---GPVNLGNPEEFTILELAELVKKLTGSKSEIVFLPLPE 268
Query: 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
D + KA+ L W+ K ++E R +
Sbjct: 269 DDPKRRRPDISKAKELLGWEPKVPLEEGLRRTIEY 303
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-27
Identities = 104/342 (30%), Positives = 153/342 (44%), Gaps = 38/342 (11%)
Query: 4 NILVIGGVGYIGSHTVLQLL--LGGYKTVVVDNLDNASEIA-VAKVKELAGYQGNNMTFH 60
ILV GG G+IGS+ V +L + +V+D L A + +A +++ Y F
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRY-----RFV 55
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K D+ D+ + +F + DAV+HFA V S+ P + + N+ GT TLLE + +
Sbjct: 56 KGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYW 115
Query: 121 CK-NLVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
+ S+ YG K TE PL +PY SK + + R HR+ ++
Sbjct: 116 HEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRT-YGLPALI 174
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
R N G P P L+P +T G+ L V+G DG VRD++
Sbjct: 175 TRCSNNYG---------PYQFPEKLIPLMITNALAGKP--LPVYG------DGQQVRDWL 217
Query: 238 HVVDLADGHIAALRK-LDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR- 295
+V D H A+ L+ +VG E YN+G G + LE+V + GK L+
Sbjct: 218 YVED----HCRAIYLVLEKGRVG-ETYNIGGGNERTNLEVVETILELLGKDEDLITHVED 272
Query: 296 RPGDAEIVYA-STEKAERELNWKAKYGIDEMCRDQWNWASKN 336
RPG + YA K +REL W KY +E R W N
Sbjct: 273 RPGH-DRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDN 313
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-26
Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 50/332 (15%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGY--KTVVVDN-------LDNASEIAVAKVKELAGYQGN 55
+LV G G+IGSH V L+ GY + V+ N LD + K++ + G
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDKIEVVTG---- 56
Query: 56 NMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEV 115
D+RD ++ G D V H A L A+ S P Y D N+TGT+ +L+
Sbjct: 57 -------DIRDPDSVRKAMKGC--DVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNVLQA 107
Query: 116 MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWK 175
G + +V +S++ YG + VP E+ PLQ +PY SK+ +++ +RS
Sbjct: 108 ARDLGVEKVVHTSTSEVYGTAQYVPIDEKHPLQGQSPYSASKIGADQLALSFYRS-FNTP 166
Query: 176 IILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV--V 233
+ ++R FN G S + P I TQ+A G+R K G++
Sbjct: 167 VTIIRPFNTYGPRQSARAVIPTII--------TQIASGKR----------RIKLGSLSPT 208
Query: 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-- 291
RD+ +V D G IA + K EV N+G+ S+ + V + G ++ +
Sbjct: 209 RDFNYVTDTVRGFIAI---AESDKTVGEVINIGSNFEISIGDTVKLIAEIMGSEVEIETD 265
Query: 292 KSGRRPGDAEI--VYASTEKAERELNWKAKYG 321
+ RP +E+ ++ K + W+ KY
Sbjct: 266 EERLRPEKSEVERLWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-24
Identities = 81/292 (27%), Positives = 120/292 (41%), Gaps = 41/292 (14%)
Query: 5 ILVIGGVGYIGSHTVLQL-LLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGS+ V L G +VVDNL + + +A Y K D
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLADLVIADY------IDKED 54
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
D+ K +A+ H E+ + + +NN + LL+ A G
Sbjct: 55 FLDRLEKGAFG---KIEAIFHQGACSDTTETDGEYM--MENNYQYSKRLLDWCAEKGIP- 108
Query: 124 LVFSSSATAYGW---PKVVPCTEEFPLQAMNPYGRSKLFIEEICRD-VHRSDSEWKIILL 179
+++SSA YG E PL N YG SK ++ R V +++ L
Sbjct: 109 FIYASSAATYGDGEAGFREGRELERPL---NVYGYSKFLFDQYVRRRVLPEALSAQVVGL 165
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFV-----TQVAVGRRPALTVFGTDYSTKDGTVVR 234
RYFN G KG+ M V Q+ G L + KDG +R
Sbjct: 166 RYFNVYGPREYHKGK---------MASVAFHLFNQIKAGGNVKLFKSSEGF--KDGEQLR 214
Query: 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK 286
D+++V D+ D L L++ G ++NLGTG+ S ++ A KA GK
Sbjct: 215 DFVYVKDVVD---VNLWLLENGVSG--IFNLGTGRARSFNDLADAVFKALGK 261
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 8e-20
Identities = 77/343 (22%), Positives = 125/343 (36%), Gaps = 37/343 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ LV G G+IGSH +L G+ D E FH +
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDE----------FHLV 50
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAG-LKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DLR+ G D V H A + +G NN +LE +G
Sbjct: 51 DLREMENCLKATEGV--DHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGV 108
Query: 122 KNLVFSSSATAYG-----WPKVVPCTEE--FPLQAMNPYGRSKLFIEEICRDVHRSDSEW 174
+ +F+SSA Y VV EE +P + + YG KL E +C + D
Sbjct: 109 ERFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLC-QHYNEDYGI 167
Query: 175 KIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA-LTVFGTDYSTKDGTVV 233
+ ++R+ N G + G + +VA + ++G DG
Sbjct: 168 ETRIVRFHNIYGPRGTWDGGREKAPA----AMCRKVATAKDGDRFEIWG------DGLQT 217
Query: 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 293
R + ++ D +G LR+L + G V NLG+ + S+ E+ SGK + ++
Sbjct: 218 RSFTYIDDCVEG----LRRLMESDFGEPV-NLGSDEMVSMNELAEMVLSFSGKPLEIIHH 272
Query: 294 GRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
P + + EL W+ ++E R + W +
Sbjct: 273 TPGPQGVRGRNSDNTLLKEELGWEPNTPLEEGLRITYFWIKEQ 315
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-19
Identities = 77/292 (26%), Positives = 112/292 (38%), Gaps = 45/292 (15%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
ILV G G++GS+ V LL GY+ +V + +A + G + + D
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVLL-----------DGLPVEVVEGD 49
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L D A+L G D V H A + + N+ GT +L+ G +
Sbjct: 50 LTDAASLAAAMKGC--DRVFHLAAF--TSLWAKDRKELYRTNVEGTRNVLDAALEAGVRR 105
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAM---NPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
+V +SS A G P E P N Y RSKL E + + I+
Sbjct: 106 VVHTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAAEGLDVVIV--- 162
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
NP + G G D L V G+ PA GT ++ V
Sbjct: 163 --NP--SAVFGPG-DEGPTSTGLD--VLDYLNGKLPAYPPGGT-----------SFVDVR 204
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
D+A+GHIAA+ K + G E Y LG G+ S ++ + +G K P
Sbjct: 205 DVAEGHIAAMEK---GRRG-ERYILG-GENLSFKQLFETLAEITGVKPPRRT 251
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-19
Identities = 82/344 (23%), Positives = 126/344 (36%), Gaps = 63/344 (18%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
ILV G G +G + + L + + VD LD + + + +LD+
Sbjct: 1 ILVTGAAGGLG-RLLARRLAASPRVIGVDGLD----------RRRPPGSPPKVEYVRLDI 49
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
RD AA VF + DAV+H A + + + N+ GT +L+ AA G +
Sbjct: 50 RDPAA-ADVFREREADAVVHLA---FILDPPRDGAERHRINVDGTQNVLDACAAAGVPRV 105
Query: 125 VFSSSATAYG-WPK-VVPCTEEFPLQAMN--PYGRSKLFIEEICRDVHRSDSEWKIILLR 180
V +SS YG P P TE+ PL+ Y R K +E++ + R E + +LR
Sbjct: 106 VVTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTVLR 165
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
+G D +P V G P +H
Sbjct: 166 PATILGPGTRNTTRDFL--SPRRLP----VPGGFDPPFQF----------------LHED 203
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR----- 295
D+A + A+R G ++N+ G G L +V A +P
Sbjct: 204 DVARALVLAVRA---GATG--IFNVA-GDGPVPLSLVLALLGRRPVPLPSPLPAALAAAR 257
Query: 296 ----RPGDAE----IVY---ASTEKAERELNWKAKYGIDEMCRD 328
RP E + Y T +A EL W+ K+ E+ RD
Sbjct: 258 RLGLRPLPPEQLDFLQYPPVMDTTRARVELGWQPKHTSAEVLRD 301
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-18
Identities = 84/358 (23%), Positives = 140/358 (39%), Gaps = 47/358 (13%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M K L+ G G GS+ LL GY+ + ++ + E + H
Sbjct: 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLH 60
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
DL D + L + + D + + A VG S ++P D + GT+ LLE + G
Sbjct: 61 YGDLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILG 120
Query: 121 CKNLVF--SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
K F +S++ YG + +P E P +PY +KL+ I + +R
Sbjct: 121 EKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVN-YRESYGLFACN 179
Query: 179 LRYFNPVGAHPS-GKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV--VRD 235
FN H S +GE FVT+ + R A G G + RD
Sbjct: 180 GILFN----HESPLRGET----------FVTR-KITRAVARIKLGLQDKLYLGNLDAKRD 224
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMV-AAFE----------KAS 284
+ H D + L++ ++P + Y + TG+ SV E V AFE
Sbjct: 225 WGHAKDYVEAMWLMLQQ-EEP----DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGV 279
Query: 285 GKKIPLVKSGR----------RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
+K K+G+ RP + +++ KA+ +L W+ + ++E+ R+
Sbjct: 280 DEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEA 337
|
Length = 345 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-18
Identities = 84/340 (24%), Positives = 123/340 (36%), Gaps = 61/340 (17%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+LV G G+IG V +LL G + + V N +NA V
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLA----------------- 43
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAV-GESVQKPLP-YFDNNLTGTITLLEVMAAHG 120
+L D + +F G DAV+H A V + PL Y N T L A G
Sbjct: 44 ELPDIDSFTDLFLGV--DAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQG 101
Query: 121 CKNLVFSSSATAYGWPKV-VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
K VF SS G V P E P + YGRSKL E ++ SD ++++L
Sbjct: 102 VKRFVFLSSVKVNGEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASDG-MEVVIL 160
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
R P+ P +G R LM + R L G + R + +
Sbjct: 161 RP--PMVYGPGVRGNFAR-----LMR-----LIDRGLPL-PPGAVKNR------RSLVSL 201
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK------- 292
+L D A + PK + + G S E+V +A GK L+
Sbjct: 202 DNLVD---AIYLCISLPKAANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLR 258
Query: 293 -SGRRPGDAEIVYA-------STEKAERELNWKAKYGIDE 324
+ + G ++ EK + EL W+ ++E
Sbjct: 259 FAAKLLGKRAVIQRLFGSLQYDPEKTQNELGWRPPISLEE 298
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-17
Identities = 82/337 (24%), Positives = 125/337 (37%), Gaps = 49/337 (14%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
ILV G G +GS V L GY+ VV T +LDL
Sbjct: 2 ILVTGHRGLVGSAIVRVLARRGYENVVF------------------------RTSKELDL 37
Query: 65 RDKAALEVVFAGTKFDAVIHFA----GLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+ A+ F K D VIH A G+ A ++ P + +NL ++ G
Sbjct: 38 TDQEAVRAFFEKEKPDYVIHLAAKVGGIVA---NMTYPADFLRDNLLINDNVIHAAHRFG 94
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEF----PLQAMN-PYGRSKLFIEEICRDVHRSDSEWK 175
K LVF S+ Y P E P + N Y +K ++C +
Sbjct: 95 VKKLVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYG-CD 153
Query: 176 IILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
I + N G H + E+ IP + F G +TV+G GT R+
Sbjct: 154 YISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRG-GKEVTVWG------SGTPRRE 206
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
+++ DLA + L D+P + N+G+G S+ E+ A + G K +V
Sbjct: 207 FLYSDDLARAIVFLLENYDEP----IIVNVGSGVEISIRELAEAIAEVVGFKGEIVFDTS 262
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
+P K R L W +++ R+ + W
Sbjct: 263 KPDGQPRKLLDVSKL-RALGWFPFTPLEQGIRETYEW 298
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 6e-17
Identities = 83/349 (23%), Positives = 135/349 (38%), Gaps = 61/349 (17%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV G G+ GS L L G K V+ +LD + + ++ L N ++ +
Sbjct: 5 KRVLVTGHTGFKGSWLSLWLQELGAK-VIGYSLDPPTNPNLFELANLD----NKISSTRG 59
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC- 121
D+RD AL + + V H A V S + P+ F+ N+ GT+ LLE + G
Sbjct: 60 DIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSV 119
Query: 122 KNLVFSSSATAY-----GWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
K +V +S Y GW E PL +PY SK E I S
Sbjct: 120 KAVVNVTSDKCYENKEWGWGYR----ENDPLGGHDPYSSSKGCAELIISSYRNS------ 169
Query: 177 ILLRYFNPVGAHPSGKG----------------EDPRGIPNNLMPFVT-QVAVGRRPALT 219
+FNP G ED R +P+ + F + + R P
Sbjct: 170 ----FFNPENYGKHGIAIASARAGNVIGGGDWAED-RIVPDCIRAFEAGERVIIRNP--- 221
Query: 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIA-ALRKLDDPKVGCEVYNLG--TGKGTSVLEM 276
+R + HV++ G++ A + + + E +N G +VLE+
Sbjct: 222 -----------NAIRPWQHVLEPLSGYLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLEL 270
Query: 277 VAAFEKASG-KKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
V A + G + P +A ++ KA+ L W+ ++ ++E
Sbjct: 271 VEAMARYWGEDARWDLDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEE 319
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 9e-17
Identities = 52/184 (28%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS--EIAVAKVKELAG-YQGNNMTF 59
K ILV GG G IGS V Q+L G K ++V + D E+ V+EL + + + F
Sbjct: 3 KTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHEL----VRELRSRFPHDKLRF 58
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
D+RDK L F D V H A LK V P N+ GT +++ +
Sbjct: 59 IIGDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIEN 118
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
G + V S+ K V N G +K E++ + S K +
Sbjct: 119 GVEKFVCIST------DKAVNPV--------NVMGATKRVAEKLLLAKNEYSSSTKFSTV 164
Query: 180 RYFN 183
R+ N
Sbjct: 165 RFGN 168
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 12/178 (6%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+L+ G G++G + + LL + +D S A + + T D
Sbjct: 2 KVLITGASGFVGQR-LAERLLSDVPNERLILIDVVSPKAPSGAPRV--------TQIAGD 52
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK- 122
L A +E + G D V H A + + G + + N+ GT LLE + +G K
Sbjct: 53 LAVPALIEALANGRP-DVVFHLAAIVS-GGAEADFDLGYRVNVDGTRNLLEALRKNGPKP 110
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
VF+SS YG P P T+ L + YG K E + D R L
Sbjct: 111 RFVFTSSLAVYGLPLPNPVTDHTALDPASSYGAQKAMCELLLNDYSRRGFVDGRTLRL 168
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-16
Identities = 78/365 (21%), Positives = 128/365 (35%), Gaps = 71/365 (19%)
Query: 4 NILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
++LV GG G+ G V QLL GG D ++ + + F K
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEALSAWQHPNI--------EFLKG 52
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D+ +E +G D V H A A+ Y++ N+ GT +L+ G +
Sbjct: 53 DITDRNDVEQALSGA--DCVFHTA---AIVPLAGPRDLYWEVNVGGTQNVLDACQRCGVQ 107
Query: 123 NLVFSSSATAY--GWPKVVPC-TEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
V++SS++ G T +P + Y +K E I + + D L
Sbjct: 108 KFVYTSSSSVIFGGQNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCAL- 166
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQV---AVGRRPALTVFGTDYSTKDGTVVRDY 236
P GI + + + VFG G + D+
Sbjct: 167 ---------------RPAGIFGPGDQGLVPILFEWAEKGLVKFVFG------RGNNLVDF 205
Query: 237 IHVVDLADGHIAALRKLDDPK-VGCEVYNLGTGKGTSVLEMVAAFEKASG----KKIP-- 289
+V +LA HI A L K + + Y + + ++ E++ KA G KI
Sbjct: 206 TYVHNLAHAHILAAAALVKGKTISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLS 265
Query: 290 ------------LVKSGRRP--------GDAEIV--YASTEKAERELNWKAKYGIDEMCR 327
LV P A + Y S KA+++L + +Y +E
Sbjct: 266 GPLAYCAALLSELVSFMLGPYFVFSPFYVRALVTPMYFSIAKAQKDLGYAPRYSNEEGLI 325
Query: 328 DQWNW 332
+ NW
Sbjct: 326 ETLNW 330
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 3e-16
Identities = 100/363 (27%), Positives = 144/363 (39%), Gaps = 59/363 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEI-AVAKVKELAGYQGNNMTFH 60
+ IL+ GG G+IGS V ++ VVVD L A + ++A V Q F
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA-----QSERFAFE 56
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K+D+ D+A L VF + D V+H A V S+ P + + N+ GT TLLE AA
Sbjct: 57 KVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLE--AARA 114
Query: 121 CKNLVFSSSATAYGWPKVVP-------------CTEEFPLQAMNPYGRSKLFIEEICRDV 167
N + +A+ + + TE P +PY SK + + R
Sbjct: 115 YWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVR-- 172
Query: 168 HRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
W L Y P P P L+P + A+ +P L V+G
Sbjct: 173 -----AW---LRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKP-LPVYG----- 218
Query: 228 KDGTVVRDYIHVVDLADGHIAAL-RKLDDPKVGCEVYNLG---TGKGTSVLEMVAA-FEK 282
+G +RD+++V D H AL KVG E YN+G K V+E + E+
Sbjct: 219 -NGQQIRDWLYVED----HARALYCVATTGKVG-ETYNIGGHNERKNLDVVETICELLEE 272
Query: 283 ASGKKIPLVKSGR--------RPGDAEIVYA-STEKAERELNWKAKYGIDEMCRDQWNWA 333
+ K V R RPG ++ YA K REL W + + R W
Sbjct: 273 LAPNKPQGVAHYRDLITFVADRPGH-DLRYAIDASKIARELGWLPQETFESGMRKTVQWY 331
Query: 334 SKN 336
N
Sbjct: 332 LAN 334
|
Length = 355 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (188), Expect = 1e-15
Identities = 76/338 (22%), Positives = 147/338 (43%), Gaps = 25/338 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVK-ELAGYQGNNMTFHK 61
K L+ G G+IGS + +LL + +DN + + V+ ++ Q + F +
Sbjct: 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQ 75
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+R + A D V+H A L +V S++ P+ N+ G + +L
Sbjct: 76 GDIRKFTDCQK--ACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV 133
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
+ +++S++ YG +P EE + ++PY +K ++ E+ DV E+ I LRY
Sbjct: 134 SSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTK-YVNELYADVFARSYEFNAIGLRY 192
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
FN G+ ++P G + ++P + P Y DG+ RD+ ++ +
Sbjct: 193 FNVF-----GRRQNPNGAYSAVIPRWILSLLKDEPI-------YINGDGSTSRDFCYIEN 240
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEM-------VAAFEKASGKKIPLVKSG 294
+ ++ + +D +VYN+ G TS+ E+ + + + P+ K
Sbjct: 241 VIQANLLSATT-NDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKD- 298
Query: 295 RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
R GD + A K + L+++ ++ I E + W
Sbjct: 299 FRDGDVKHSQADITKIKTFLSYEPEFDIKEGLKQTLKW 336
|
Length = 348 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-15
Identities = 81/347 (23%), Positives = 138/347 (39%), Gaps = 64/347 (18%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+L+ GG G IGSH + LL G++ VV+DN A + + L + N+T +
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNF------ATGRREHLPDHP--NLTVVEG 52
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLT---GTITLLEVMAAH 119
+ DKA ++ +F K DAV+H A + + P ++++ LT G +++
Sbjct: 53 SIADKALVDKLFGDFKPDAVVHTAA------AYKDPDDWYEDTLTNVVGGANVVQAAKKA 106
Query: 120 GCKNLVFSSSATAYGWPKVV-PCTEEFPL-QAMNPYGRSKL----FIEEICRDVHRSDSE 173
G K L++ +A YG + P + P + Y SK ++E S
Sbjct: 107 GVKRLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGEYYLEL---------SG 157
Query: 174 WKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233
+ R N G PR + L F ++ G++ F TD
Sbjct: 158 VDFVTFRLANVTG---------PRNVIGPLPTFYQRLKAGKK----CFVTD-------TR 197
Query: 234 RDYIHVVDLADGHIAALRKLD-DPKVGCEVYNLGTGKGTSVLEMVAAFEKASG----KKI 288
RD++ V DLA + LD G Y+ +G+ S+ E+ A +A ++
Sbjct: 198 RDFVFVKDLAR---VVDKALDGIRGHG--AYHFSSGEDVSIKELFDAVVEALDLPLRPEV 252
Query: 289 PLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335
+V+ G P D + + ++ WK + E W K
Sbjct: 253 EVVELG--PDDVPSILLDPSRTFQDFGWKEFTPLSETVSAALAWYDK 297
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-15
Identities = 95/343 (27%), Positives = 137/343 (39%), Gaps = 57/343 (16%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVV-VDNLDNASEI-AVAKVKELAGYQGNNMTFHKL 62
ILV GG G+IGS V ++ +VV VD L A + ++A V + Y F
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERY-----VFEHA 57
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEV------- 115
D+ D+A L+ +FA + DAV+H A V S+ P + + N+ GT LLE
Sbjct: 58 DICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSA 117
Query: 116 MAAHGCKNLVFS--SSATAYG---WPKVVPCTEEFPL-------QAMNPYGRSKLFIEEI 163
+ F S+ YG P V +EE PL +PY SK + +
Sbjct: 118 LDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHL 177
Query: 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223
R R+ Y P P P L+P V A+ +P L ++G
Sbjct: 178 VRAWLRT----------YGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKP-LPIYGK 226
Query: 224 DYSTKDGTVVRDYIHVVDLADGHIAALRK-LDDPKVGCEVYNLGTGKGTSVLEMV----- 277
G +RD+++V D H AL K + + K G E YN+G L++V
Sbjct: 227 ------GDQIRDWLYVED----HARALYKVVTEGKAG-ETYNIGGHNEKKNLDVVLTICD 275
Query: 278 ---AAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWK 317
KA+ + + RPG K REL WK
Sbjct: 276 LLDEIVPKATSYREQITYVADRPGHDRRYAIDASKISRELGWK 318
|
Length = 352 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 6e-15
Identities = 96/348 (27%), Positives = 144/348 (41%), Gaps = 42/348 (12%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGN-NMT 58
KNIL+ G G+I SH +L+ YK VV+D LD S +K L + + N
Sbjct: 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSN-----LKNLNPSKSSPNFK 60
Query: 59 FHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA 118
F K D+ + + D ++HFA V S + NN+ GT LLE
Sbjct: 61 FVKGDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
Query: 119 HG-CKNLVFSSSATAYG---WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEW 174
G + + S+ YG V E L NPY +K E + RS
Sbjct: 121 TGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG-L 179
Query: 175 KIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234
+I R N G P P L+P +A+ +P L + G DG+ VR
Sbjct: 180 PVITTRGNNVYG---------PNQFPEKLIPKFILLAMQGKP-LPIHG------DGSNVR 223
Query: 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVA-----AFEKASGKKIP 289
Y++ D+A+ L K +VG VYN+GT K V++ VA F K I
Sbjct: 224 SYLYCEDVAEAFEVVLHK---GEVG-HVYNIGTKKERRVID-VAKDICKLFGLDPEKSIK 278
Query: 290 LVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337
V++ RP + + + +K ++L W+ + +E + W + NP
Sbjct: 279 FVEN--RPFNDQRYFLDDQKL-KKLGWQERTSWEEGLKKTMEWYTSNP 323
|
Length = 668 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 78/357 (21%), Positives = 129/357 (36%), Gaps = 67/357 (18%)
Query: 4 NILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ LV+GG G++G H V QLL G V D + EL + FH
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFD---------IRPTFELDPSSSGRVQFHTG 51
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DL D LE F + V H A + L Y+ N+ GT ++E G K
Sbjct: 52 DLTDPQDLEKAFNEKGPNVVFHTA---SPDHGSNDDL-YYKVNVQGTRNVIEACRKCGVK 107
Query: 123 NLVFSSSATA-YGWPKVVPCTEEFP--LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
LV++SSA+ + ++ E P + + Y +K E++ + +S L
Sbjct: 108 KLVYTSSASVVFNGQDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTCAL 167
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
R P G G D + +P + G+ T + DG + D+ +V
Sbjct: 168 R---PAGIFGPG---DRQLVPG----LLKAAKNGK--------TKFQIGDGNNLFDFTYV 209
Query: 240 VDLADGHIAALRKLDDPK----VGCEVYNLGTGKGTSVLEMVAAFEKASGK------KIP 289
++A HI A L V E + + + + A + G K+P
Sbjct: 210 ENVAHAHILAADALLSSSHAETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLP 269
Query: 290 ---------LVK-----SGRRPGDA--EIVYAST------EKAERELNWKAKYGIDE 324
L++ G+ P + + EKA++ L + ++E
Sbjct: 270 RPVALYLASLLEWTCKVLGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEE 326
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 7e-14
Identities = 84/327 (25%), Positives = 136/327 (41%), Gaps = 42/327 (12%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH--KL 62
I+V GG G++GSH V +L+ G + +V+DN KE + N F +
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGR-------KENLVHLFGNPRFELIRH 175
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ + LEV D + H A + P+ N+ GT+ +L + G +
Sbjct: 176 DVVEPILLEV-------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAR 228
Query: 123 NLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
L+ +S++ YG P P E + P+ + Y K E + D HR + ++
Sbjct: 229 FLL-TSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRG-AGVEVR 286
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
+ R FN G P +D R + N FV Q R+ +TV+G DG R +
Sbjct: 287 IARIFNTYG--PRMCLDDGRVVSN----FVAQTI--RKQPMTVYG------DGKQTRSFQ 332
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP 297
+V DL DG +A ++ VG +NLG ++LE+ ++ +
Sbjct: 333 YVSDLVDGLVAL---MEGEHVG--PFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTA 387
Query: 298 GDAEIVYASTEKAERELNWKAKYGIDE 324
D KA+ LNW+ K + E
Sbjct: 388 DDPHKRKPDISKAKELLNWEPKISLRE 414
|
Length = 436 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-13
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 23/162 (14%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
IL++G G+IG +LL G++ ++ V K L+ + + DL
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLL----------VRNTKRLSKEDQEPVAVVEGDL 50
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
RD +L G D VIH AG + + ++ GT +LE G K+
Sbjct: 51 RDLDSLSDAVQGV--DVVIHLAGAPRDTRD------FCEVDVEGTRNVLEAAKEAGVKHF 102
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRD 166
+F SS AYG TE P PY K E + R+
Sbjct: 103 IFISSLGAYGDL--HEETEPSPSS---PYLAVKAKTEAVLRE 139
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 21/188 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKV-KELAGYQGN-NMTFH 60
K +LV GG G IGS Q+L K +++ E + + EL + F+
Sbjct: 251 KTVLVTGGGGSIGSELCRQILKFNPKEIIL--FSR-DEYKLYLIDMELREKFPELKLRFY 307
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+RD+ +E G K D V H A LK V P N+ GT + E +G
Sbjct: 308 IGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG 367
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHR--SDSEWKIIL 178
K V S+ A V P N G +K E++ + +R S + + +
Sbjct: 368 VKKFVLISTDKA-----VNP---------TNVMGATKRLAEKLFQAANRNVSGTGTRFCV 413
Query: 179 LRYFNPVG 186
+R+ N +G
Sbjct: 414 VRFGNVLG 421
|
Length = 588 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 75/263 (28%), Positives = 114/263 (43%), Gaps = 38/263 (14%)
Query: 6 LVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
LV GG G++G H V LL G + V V +L + E +++ + Q +T+ + D+
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPE----LLEDFSKLQ--VITYIEGDV 54
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
DK L G+ D VIH A + V N+ GT +L+ G + L
Sbjct: 55 TDKQDLRRALQGS--DVVIHTAAIIDVF-GKAYRDTIMKVNVKGTQNVLDACVKAGVRVL 111
Query: 125 VFSSSATA-----YGWPKVVPCTEEFPLQA--MNPYGRSKLFIEEICRDVHRS-DSEWKI 176
V++SS YG P +V E P ++ +PY SK E++ V ++ S K
Sbjct: 112 VYTSSMEVVGPNSYGQP-IVNGDETTPYESTHQDPYPESKALAEKL---VLKANGSTLKN 167
Query: 177 ILLRYFNPVGAHPSGK-GE-DPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234
Y P+G GE DP L PF+ ++ + T D V+
Sbjct: 168 GGRLY--TCALRPAGIFGEGDPF-----LFPFLVRLLKNG-------LAKFRTGDKNVLS 213
Query: 235 DYIHVVDLADGHIAALRKLDDPK 257
D ++V ++A HI A R L DPK
Sbjct: 214 DRVYVGNVAWAHILAARALQDPK 236
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 74/344 (21%), Positives = 119/344 (34%), Gaps = 79/344 (22%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKEL--AGYQGNNMTFHK 61
+LV G G+I SH V QLL GYK V +L + AK+K L A + + F
Sbjct: 2 VLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKS-----AKLKALLKAAGYNDRLEFVI 56
Query: 62 LDLRDK-AALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLT---------GTIT 111
+D A + G D VIH A P P+ + GT+
Sbjct: 57 VDDLTAPNAWDEALKGV--DYVIHVA----------SPFPFTGPDAEDDVIDPAVEGTLN 104
Query: 112 LLEVMAAHGC-KNLVFSSSATA----YGWPKVVPCTEE------FPLQA-MNPYGRSKLF 159
+LE A G K +V +SS A TEE ++ Y SK
Sbjct: 105 VLEAAKAAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTL 164
Query: 160 IEEICRD-VHRSDSEWKIILLRYFNPV--------GAHPSGKGEDPRGIPNNLMPFVTQV 210
E+ + V + ++++I + NP + E + + +P +
Sbjct: 165 AEKAAWEFVKENKPKFELITI---NPGYVLGPSLLADELNSSNELINKLLDGKLPAI--- 218
Query: 211 AVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270
P FG Y+ V D+AD H+ AL P+ + + + +
Sbjct: 219 -----PPNLPFG-------------YVDVRDVADAHVRALES---PEAAGQRF-IVSAGP 256
Query: 271 TSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAEREL 314
S E+ + + + + +V K+E L
Sbjct: 257 FSFQEIADLLREEFPQLTAPFPAPNPLMLSILVKFDNRKSEELL 300
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 88/365 (24%), Positives = 139/365 (38%), Gaps = 73/365 (20%)
Query: 6 LVIGGVGYIGSHTVLQLLLGGYKT-VVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
LV G G++GS V LL G + V+V + + V+ + G DL
Sbjct: 4 LVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEG-----------DL 52
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
RD A+L AG A+ H A + P + N+ GT LL G + +
Sbjct: 53 RDPASLRKAVAGC--RALFHVAADYRLW--APDPEEMYAANVEGTRNLLRAALEAGVERV 108
Query: 125 VFSSS-ATAYGWPKVVPCTEEFPL---QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
V++SS AT P E P + Y RSK E+ ++ +I+
Sbjct: 109 VYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIV-- 166
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
NP + P G D + P + + G+ PA G + +HV
Sbjct: 167 --NP--STPIGPR-DIKPTPTGRI--IVDFLNGKMPAYVDTGL-----------NLVHVD 208
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP--- 297
D+A+GH+ AL + ++G E Y LG G+ ++ +++ + +G+ P VK R
Sbjct: 209 DVAEGHLLALER---GRIG-ERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLP 263
Query: 298 ---GDAEIV---------------------YASTEKAERELNWKAKYGIDEMCRDQWNWA 333
G + + S+ KA REL ++ + E RD W
Sbjct: 264 VAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQR-PAREALRDAVEWF 322
Query: 334 SKNPY 338
N Y
Sbjct: 323 RANGY 327
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 6e-12
Identities = 75/318 (23%), Positives = 109/318 (34%), Gaps = 80/318 (25%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
IL+IGG +IG V +LL G+ V V N V+ + G
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAGH-DVTVFNRGRTKPDLPEGVEHIVG----------- 48
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D D+ ALE + G FD V+ V+ L+ K
Sbjct: 49 DRNDRDALEELLGGEDFDVVVDTIAYTP--RQVE--------------RALDAFKGR-VK 91
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPL--------QAMNPYGRSKLFIEEICRDVHRSDSEW 174
+F SSA+ Y P TE PL YGR K E++ + +
Sbjct: 92 QYIFISSASVYLKPG-RVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAAA----F 146
Query: 175 KIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR---PALTVFGTDYSTKDGT 231
++R G P L F ++A GR P DG
Sbjct: 147 PYTIVRPPYIYG---------PGDYTGRLAYFFDRLARGRPILVPG-----------DGH 186
Query: 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
+ +IHV DLA A L +PK ++N+ + + E++ A KA GK
Sbjct: 187 SLVQFIHVKDLAR---ALLGAAGNPKAIGGIFNITGDEAVTWDELLEACAKALGK----- 238
Query: 292 KSGRRPGDAEIVYASTEK 309
+AEIV+ +
Sbjct: 239 -------EAEIVHVEEDF 249
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-11
Identities = 77/279 (27%), Positives = 120/279 (43%), Gaps = 42/279 (15%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL-- 62
++V GG G++GSH V +L+ G +VVDN KE + +N F +
Sbjct: 122 VVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGR-------KENVMHHFSNPNFELIRH 174
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ + LEV D + H A + P+ N+ GT+ +L + G +
Sbjct: 175 DVVEPILLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 227
Query: 123 NLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
L+ S+S YG P P E + P+ + Y K E + D HR + ++
Sbjct: 228 FLLTSTSEV-YGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-ANVEVR 285
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
+ R FN G P +D R + N FV Q R+ LTV+G DG R +
Sbjct: 286 IARIFNTYG--PRMCIDDGRVVSN----FVAQAL--RKEPLTVYG------DGKQTRSFQ 331
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEM 276
V DL +G +R ++ VG +NLG ++LE+
Sbjct: 332 FVSDLVEG---LMRLMEGEHVG--PFNLGNPGEFTMLEL 365
|
Length = 442 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 76/297 (25%), Positives = 115/297 (38%), Gaps = 55/297 (18%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGS+ V L G + VVDNL + ++ ++A Y +D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADY---------MD 52
Query: 64 LRDKAALEVVFAGTKF---DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D A + AG F +A+ H + E K + DNN + LL H
Sbjct: 53 KEDFLA--QIMAGDDFGDIEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELL-----HY 103
Query: 121 CKN----LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
C +++SSA YG E + +N YG SK +E R + ++ +I
Sbjct: 104 CLEREIPFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQI-LPEANSQI 162
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFV-----TQVAVGRRPALTVFGTDYSTKDGT 231
RYFN G KG M V Q+ G P L G++
Sbjct: 163 CGFRYFNVYGPREGHKGS---------MASVAFHLNNQLNNGENPKLFE-GSE------N 206
Query: 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCE-VYNLGTGKGTSVLEMVAAFEKASGKK 287
RD+++V D+A ++ G ++N GTG+ S + A K
Sbjct: 207 FKRDFVYVGDVAAVNLWFWEN------GVSGIFNCGTGRAESFQAVADAVLAYHKKG 257
|
Length = 308 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 70/291 (24%), Positives = 120/291 (41%), Gaps = 28/291 (9%)
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFA----GLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
LDL +A +E FA K VI A G+ A ++ P + NL +++
Sbjct: 33 LDLTRQADVEAFFAKEKPTYVILAAAKVGGIHA---NMTYPADFIRENLQIQTNVIDAAY 89
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEF----PLQAMNP-YGRSKLFIEEICRDVHRSDS 172
HG K L+F S+ Y P E P + N Y +K+ ++C+ +R
Sbjct: 90 RHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQ-AYRIQY 148
Query: 173 EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
W I N G H + E+ IP L+ + P + V+G+ G+
Sbjct: 149 GWDAISGMPTNLYGPHDNFHPENSHVIPA-LIRRFHEAKANGAPEVVVWGS------GSP 201
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
+R+++HV DLAD + +R+ E N+G+G ++ E+ ++ G + LV
Sbjct: 202 LREFLHVDDLADAVVFLMRRYSGA----EHVNVGSGDEVTIKELAELVKEVVGFEGELVW 257
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESP 343
+P D R L W K+ + + ++ + W +N YE+
Sbjct: 258 DTSKP-DGTPRKLMDSSKLRSLGWDPKFSLKDGLQETYKWYLEN---YETG 304
|
Length = 306 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 37/166 (22%), Positives = 53/166 (31%), Gaps = 34/166 (20%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
IL+ G G +G V L GY+ + + + KLD
Sbjct: 1 KILITGATGMLGRALVRLLKERGYEVIGTGR--------------------SRASLFKLD 40
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L D A+E K D +I+ A V + P + N+ L G +
Sbjct: 41 LTDPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGARL 100
Query: 124 L------VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163
+ VF Y EE +N YG+SKL E
Sbjct: 101 IHISTDYVFDGKKGPY--------KEEDAPNPLNVYGKSKLLGEVA 138
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 7e-09
Identities = 66/301 (21%), Positives = 96/301 (31%), Gaps = 43/301 (14%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKV-KELAGYQGNNMTFHKLD 63
+LV G G++ SH V QLL GYK V + + S++ +L G D
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYK--VRATVRDPSKVKKVNHLLDLDAKPGRLELA-VAD 57
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-K 122
L D+ + + V G V H A V S + P + GT+ L+ AA K
Sbjct: 58 LTDEQSFDEVIKGCAG--VFHVA--TPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVK 113
Query: 123 NLVFSSSATAYGWPKVV---------PCTEEFPLQAMNP----YGRSKLFIEEICRDVHR 169
V +SSA + PK E Y SK E+
Sbjct: 114 RFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFAD 173
Query: 170 SDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229
++ I ++ +G E P + V PAL + Y
Sbjct: 174 ENNIDLITVIPTL-TIG--TIFDSETPSSSGWAMSLITGNEGV--SPALALIPPGY---- 224
Query: 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAF-EKASGKKI 288
Y+HVVD+ HI L P T ++ +K
Sbjct: 225 ------YVHVVDICLAHIGCLEL---PIARGRYI--CTAGNFDWNTLLKTLRKKYPSYTF 273
Query: 289 P 289
P
Sbjct: 274 P 274
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 27/155 (17%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
I +IG G GS V + L G++ T +V + K+K + G
Sbjct: 1 KIAIIGATGRTGSAIVREALARGHEVTALVRD-PAKLPAEHEKLKVVQG----------- 48
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D ++ G DAVI A+G + L + GT ++ M A G K
Sbjct: 49 DVLDLEDVKEALEG--QDAVI-----SALGT--RNDLSPTTLHSEGTRNIVSAMKAAGVK 99
Query: 123 NLVFSSSATAYGW----PKVVPCTEEFPLQAMNPY 153
L+ A +V T FP
Sbjct: 100 RLIVVGGA-GSLDDRPKVTLVLDTLLFPPALRRVA 133
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 27/172 (15%)
Query: 5 ILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
IL+ GG+G IGS L G V+ AS+I ++ + + F LD
Sbjct: 2 ILITGGLGQIGSELAKLLRKRYGKDNVI------ASDI-----RKPPAHVVLSGPFEYLD 50
Query: 64 LRDKAALEVVFAGTKFDAVIHFAG-LKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+ D +LE + K +IH A L AVGE + P +D N+ G +LE+ H +
Sbjct: 51 VLDFKSLEEIVVNHKITWIIHLAALLSAVGE--KNPPLAWDVNMNGLHNVLELAREHNLR 108
Query: 123 NLVFSSSATAYGWPKVVPCTEEFP---LQAMNP---YGRSKLFIEEICRDVH 168
+ S+ A+G P T P YG SK+ E + H
Sbjct: 109 -IFVPSTIGAFG-----PTTPRNNTPDDTIQRPRTIYGVSKVAAELLGEYYH 154
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 35/193 (18%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD--NASEIAVAKVKEL-AGYQGNNMTFHK 61
+LV GG G IGS Q+L K +++ + D EI +EL Y + F
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIR----QELRQEYNDPKLRFFI 56
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPL----PY--FDNNLTGTITLLEV 115
D+RD+ LE D V H A LK V PL P N+ GT + E
Sbjct: 57 GDVRDRERLERAMEQHGVDTVFHAAALKHV------PLVEYNPMEAIKTNVLGTENVAEA 110
Query: 116 MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWK 175
+G + V S+ A V P N G +K E++ + +R K
Sbjct: 111 AIENGVEKFVLISTDKA-----VNP---------TNVMGATKRLAEKLFQAANRESGSGK 156
Query: 176 --IILLRYFNPVG 186
++R+ N +G
Sbjct: 157 TRFSVVRFGNVLG 169
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL-----------DNASEIA-----VAKVKE 48
+L++GG GY G T L L G++ +VDNL ++ + IA + KE
Sbjct: 3 VLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAWKE 62
Query: 49 LAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPY------- 101
L G + F+ D D L + A + DAV+HFA Q+ PY
Sbjct: 63 LTGKT---IEFYVGDACDYEFLAELLASHEPDAVVHFAE--------QRSAPYSMIDREH 111
Query: 102 ----FDNNLTGTITLLEVMAAHG 120
NN+ GT+ LL +
Sbjct: 112 ANYTQHNNVIGTLNLLFAIKEFD 134
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 7 VIGGVGYIGSHTVLQLLLGGYKTV--VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
V G G+IGS V +LL GY TV V + + + VA + EL G + K DL
Sbjct: 3 VTGASGFIGSWLVKRLLQRGY-TVRATVRDPGDEKK--VAHLLELEG-AKERLKLFKADL 58
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLT-----GTITLLEVMA-A 118
D + + G D V H A V + + GT+ +LE A A
Sbjct: 59 LDYGSFDAAIDGC--DGVFHVA------SPVDFDSEDPEEEMIEPAVKGTLNVLEACAKA 110
Query: 119 HGCKNLVFSSSATA 132
K +VF+SS A
Sbjct: 111 KSVKRVVFTSSVAA 124
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 33/173 (19%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I VIG G G V +LL G++ + N S+ V + + DL
Sbjct: 1 IAVIGATGKTGRRLVKELLARGHQVTAL--SRNPSKAPAPGVTPV-----------QKDL 47
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
D A L AG DAV+ A G ++ G LL+ A G + +
Sbjct: 48 FDLADLAEALAG--VDAVVD-----AFGA--------RPDDSDGVKHLLDAAARAGVRRI 92
Query: 125 VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
V S+A Y ++ PL PY R+K EE+ R S +W I+
Sbjct: 93 VVVSAAGLYRDEPGTFRLDDAPL--FPPYARAKAAAEELLR---ASGLDWTIV 140
|
Length = 182 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 38/138 (27%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL-----------DNASEIA-----VAKV 46
K ++VIGG GY G T L L GY+ +VDNL D+ + IA V +
Sbjct: 48 KKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRW 107
Query: 47 KELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPY----- 101
KE++ G + + D+ D L F + DAV+HF GE Q+ PY
Sbjct: 108 KEVS---GKEIELYVGDICDFEFLSEAFKSFEPDAVVHF------GE--QRSAPYSMIDR 156
Query: 102 ------FDNNLTGTITLL 113
NN+ GT+ +L
Sbjct: 157 SRAVFTQHNNVIGTLNVL 174
|
Length = 442 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-07
Identities = 40/160 (25%), Positives = 54/160 (33%), Gaps = 38/160 (23%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
IL+ G G +G V QL G V + T +LDL
Sbjct: 2 ILITGANGQLGRELVQQLSPEGRVVVAL-------------------------TRSQLDL 36
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
D ALE + + DAV++ A V + P F N L A HG + +
Sbjct: 37 TDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLV 96
Query: 125 ------VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158
VF P E+ +N YG+SKL
Sbjct: 97 HISTDYVFDGEGK-------RPYREDDATNPLNVYGQSKL 129
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 69/310 (22%), Positives = 113/310 (36%), Gaps = 68/310 (21%)
Query: 56 NMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEV 115
M H DL D + L + K + + A V S + P D + GT+ LLE
Sbjct: 56 RMKLHYGDLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEA 115
Query: 116 MAAHGCKNLVF---SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDS 172
+ G V +S++ YG + +P E P +PY +KL+ +
Sbjct: 116 VRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKLY------------A 163
Query: 173 EWKIILLRYFNPVGAHPSG----KGEDPRGIPNNLMPFVTQ--------VAVGRRPALTV 220
W I + Y G E PR N FVT+ + +G + L +
Sbjct: 164 HW--ITVNYREAYGLFAVNGILFNHESPRRGEN----FVTRKITRAAAKIKLGLQEKLYL 217
Query: 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMV-AA 279
D RD+ H D + L++ D P + Y + TG+ SV E V +
Sbjct: 218 GNLDAK-------RDWGHAKDYVEAMWLMLQQ-DKP----DDYVIATGETHSVREFVEVS 265
Query: 280 FEKASGKKIPLVKSGR---------------------RPGDAEIVYASTEKAERELNWKA 318
FE GK + G RP + +++ KA+ +L WK
Sbjct: 266 FEYI-GKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKP 324
Query: 319 KYGIDEMCRD 328
+ +++ ++
Sbjct: 325 EVSFEKLVKE 334
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 39/150 (26%), Positives = 55/150 (36%), Gaps = 23/150 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+L+ GG G +G L G + +V+ + + A V EL G +T
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEAL-GAEVTVAAC 59
Query: 63 DLRDKAAL-----EVVFAGTKFDAVIHFAGLKAVG----------ESVQKPLPYFDNNLT 107
D+ D+ AL + A D V+H AG+ G E V P +T
Sbjct: 60 DVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAP------KVT 113
Query: 108 GTITLLEVMAAHGCKNLV-FSSSATAYGWP 136
G L E+ V FSS A G P
Sbjct: 114 GAWNLHELTRDLDLGAFVLFSSVAGVLGSP 143
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 31/169 (18%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVD---------NLDNASEIAVAKVKELAGYQGN 55
+ V GG G++G H V +LL G+K +V+ + + +V+ L G
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEG---- 56
Query: 56 NMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEV 115
++T L L A+ E+ K D VIH A + + N+ GT +LE+
Sbjct: 57 DLTQPNLGLSAAASRELA---GKVDHVIHCAASYDFQAPNED---AWRTNIDGTEHVLEL 110
Query: 116 MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-------NPYGRSK 157
A + + S+A G + NPY +SK
Sbjct: 111 AARLDIQRFHYVSTAYVAG-----NREGNIRETELNPGQNFKNPYEQSK 154
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 69/309 (22%), Positives = 106/309 (34%), Gaps = 68/309 (22%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
I + G G+I SH +L G+ + D N + +M H+ L
Sbjct: 24 ICITGAGGFIASHIARRLKAEGHYIIASDWKKNE-------------HMSEDMFCHEFHL 70
Query: 65 RDKAALEVVFAGTK-FDAVIHFA------GLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
D +E TK D V + A G SV NN + +LE
Sbjct: 71 VDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSV-----IMYNNTMISFNMLEAAR 125
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEE--------FPLQAMNPYGRSKLFIEEICRDVHR 169
+G K ++SSA Y P+ +P + + YG KL EE+C+ +
Sbjct: 126 INGVKRFFYASSACIY--PEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKH-YT 182
Query: 170 SDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK- 228
D + + R+ N G + KG GR A F T
Sbjct: 183 KDFGIECRIGRFHNIYGPFGTWKG-------------------GREKAPAAFCRKALTST 223
Query: 229 -------DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFE 281
DG R + + + +G + L K D E N+G+ + S+ EM
Sbjct: 224 DEFEMWGDGKQTRSFTFIDECVEG-VLRLTKSD----FREPVNIGSDEMVSMNEMAEIAL 278
Query: 282 KASGKKIPL 290
KK+P+
Sbjct: 279 SFENKKLPI 287
|
Length = 370 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 42/155 (27%), Positives = 58/155 (37%), Gaps = 27/155 (17%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M + LV G +G L+L G VVV + E A ++ E G
Sbjct: 5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHY--RSDEEAAEELVEAVEALGRRAQAV 61
Query: 61 KLDLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYF---------DNNL 106
+ D+ DKAALE A + D +++ AG+ KPL D NL
Sbjct: 62 QADVTDKAALEAAVAAAVERFGRIDILVNNAGI-----FEDKPLADMSDDEWDEVIDVNL 116
Query: 107 TGTITLLEV-----MAAHGCKNLVFSSSATAYGWP 136
+G LL G + + SS A GWP
Sbjct: 117 SGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWP 151
|
Length = 249 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 61/272 (22%), Positives = 94/272 (34%), Gaps = 52/272 (19%)
Query: 6 LVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65
LV GG G++G H + L L+ E+ +V + A F K +
Sbjct: 3 LVTGGGGFLGQHIIRLL------------LERKEELKEIRVLDKAFGPELIEHFEKSQGK 50
Query: 66 --------DKAALEVVFAGTK-FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
D L +F + VIH A + V + N+ GT +LE
Sbjct: 51 TYVTDIEGDIKDLSFLFRACQGVSVVIHTAAIVDV-FGPPNYEELEEVNVNGTQAVLEAC 109
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPC--------TEEFPLQAMN--PYGRSKLFIEEICRD 166
+ K LV++SS G E+ P + + PY SKL E I
Sbjct: 110 VQNNVKRLVYTSSIEVAG----PNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENI--- 162
Query: 167 VHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225
V ++ + Y P GE F+T++ LT G +
Sbjct: 163 VLNANG-APLKQGGYLVTCALRPMYIYGEG--------SHFLTEIF---DFLLTNNGWLF 210
Query: 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPK 257
G+ V ++V ++A HI A + L P
Sbjct: 211 PRIKGSGVNPLVYVGNVAWAHILAAKALQVPD 242
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 35/140 (25%), Positives = 49/140 (35%), Gaps = 13/140 (9%)
Query: 6 LVIGGVGYIGSHTVLQLLLGGYKTVVV---DNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
LV GG G IG L +V+ L E + L G + +
Sbjct: 209 LVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEA-LGARVLYISA 267
Query: 63 DLRDKAALE-----VVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLT----GTITLL 113
D+ D AA+ V D VIH AG+ QK F+ L G + L
Sbjct: 268 DVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAPKVDGLLNLA 327
Query: 114 EVMAAHGCKNLVFSSSATAY 133
+ +A V SS +A+
Sbjct: 328 QALADEPLDFFVLFSSVSAF 347
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 33/192 (17%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS--EIAVAKVKELAGYQGNNMTFH 60
+N+L+ G G++G++ +L+LL V L A E A+A++++ +
Sbjct: 1 RNVLLTGATGFLGAYLLLELL--DRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELS 58
Query: 61 KLDLR----DKAALEVVFAGTKF-------DAVIHFAGLKAVGESVQKPLPY---FDNNL 106
+ D A ++ + + D +IH A L V PY N+
Sbjct: 59 ADRVEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAAL------VNHVFPYSELRGANV 112
Query: 107 TGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF----PLQAM-----NPYGRSK 157
GT +L + A K L + SS + T +F P + + YGRSK
Sbjct: 113 LGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSK 172
Query: 158 LFIEEICRDVHR 169
E++ R+
Sbjct: 173 WVAEKLVREAGD 184
|
Length = 382 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 88/350 (25%), Positives = 130/350 (37%), Gaps = 47/350 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV G G+ GS L LL G + V +LD + + EL
Sbjct: 5 KKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLDPPTSPNLF---ELLNLAKKIEDHFG- 59
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-C 121
D+RD A L A K + V H A V +S PL F+ N+ GT+ LLE + A G
Sbjct: 60 DIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSV 119
Query: 122 KNLVFSSSATAY-----GWPKVVPCTEEFPLQAMNPYGRSKLFIEEIC---RDVHRSDSE 173
K +V +S Y W E PL +PY SK E + R +
Sbjct: 120 KAVVNVTSDKCYRNDEWVWGYR----ETDPLGGHDPYSSSKACAELVIASYRSSFFGVAN 175
Query: 174 WKIILL---RYFNPVGAHPSGKGEDPRGIPNNLMPFV--TQVAVGRRPALTVFGTDYSTK 228
+ I + R N +G G + R IP+ + F V + R P
Sbjct: 176 FHGIKIASARAGNVIGG---GDWAEDRLIPDVIRAFSSNKIVII-RNP------------ 219
Query: 229 DGTVVRDYIHVVDLADGHIAALRKL-DDPKVGCEVYNLG--TGKGTSVLEMVA-AFEKAS 284
R + HV++ G++ KL +N G V+E+V A E
Sbjct: 220 --DATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWW 277
Query: 285 GKK--IPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
G P +A ++ + KA L W ++G++E +W
Sbjct: 278 GDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDW 327
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 51/289 (17%), Positives = 84/289 (29%), Gaps = 64/289 (22%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
ILV G G++G V +LL G++ AV + A G
Sbjct: 1 MKILVTGATGFVGGAVVRELLARGHEVR----------AAVRNPEAAAALAGGV-EVVLG 49
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DLRD +L G D V+ +GL + +T + E A G K
Sbjct: 50 DLRDPKSLVAGAKG--VDGVLLISGLLD------GSDAFRAVQVTAVVRAAEA-AGAGVK 100
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+ V S A R+K +E + S + + F
Sbjct: 101 HGVSLSVLGADAASPS-------------ALARAKAAVEAA---LRSSGIPYTTLRRAAF 144
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
F+ P + + + D D+
Sbjct: 145 ----------------YLGAGAAFIEAAEAAGLPVIPRG----IGRLSPIAVD-----DV 179
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
A+ A LD P Y L + ++ E+ + + G+ + L+
Sbjct: 180 AE---ALAAALDAPATAGRTYELAGPEALTLAELASGLDYTIGRPVGLI 225
|
Length = 275 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+LV+G G +G H V +LL GY+ +V + A ++ A + + G
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAEKLEAAGAEVVVG----------- 49
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DL D +L G DAVI A G + + G I L++ G K
Sbjct: 50 DLTDAESLAAALEG--IDAVIS-----AAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVK 102
Query: 123 NLVFSSS 129
V SS
Sbjct: 103 RFVLVSS 109
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 72/331 (21%), Positives = 110/331 (33%), Gaps = 91/331 (27%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
ILV G G +G L G + V +D +LDL
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVALDR-------------------------PELDL 35
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124
D A+ + + D V++ A AV ++ +P + N G L E AA G +
Sbjct: 36 TDPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLI 95
Query: 125 ------VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
VF + P E+ P +N YGR+KL E+ + + ++
Sbjct: 96 HISTDYVFDGAKG-------GPYREDDPTGPLNVYGRTKLAGEQAVLAANP-----RHLI 143
Query: 179 LR----YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234
LR Y G + NN + + ++A R L VV
Sbjct: 144 LRTAWVY----GEY-----------GNNFVKTMLRLA-AERDEL------------RVVD 175
Query: 235 DYI----HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 290
D + DLAD +A +RK Y+L TS + A +G
Sbjct: 176 DQLGSPTSARDLADALLALIRKRLRGPALAGTYHLAGSGETSWYDFARAIFDEAGADGGR 235
Query: 291 VK---------SGRRPGDAEIVYASTEKAER 312
V+ RRP ++ + T K E
Sbjct: 236 VRPIPTAEYPTPARRPANSVL---DTSKLEA 263
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 35/187 (18%)
Query: 4 NILVIGGVGYIGSHTVLQLL-----LGGYKTVVVDNLDNASEIAVAKVKELA---GYQGN 55
+L+ G G++G++ + +LL V + E A+ +++E
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAAS----EEHAMERLREALRSYRLWHE 56
Query: 56 NMTFHKL-----DLRDK----AALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPY---FD 103
++ ++ DL + + E D ++H L V PY
Sbjct: 57 DLARERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGAL------VNWVYPYSELRG 110
Query: 104 NNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA-----MNPYGRSKL 158
N+ GT +L + A+ K L + S+ + + TE+ Y +SK
Sbjct: 111 ANVLGTREVLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKW 170
Query: 159 FIEEICR 165
E + R
Sbjct: 171 VAELLVR 177
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 22/149 (14%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ++ GG IG T LL G K ++D +N A+++ + TF +
Sbjct: 1 KVAIITGGASGIGLATAKLLLKKGAKVAILDRNENPGAA--AELQAINP--KVKATFVQC 56
Query: 63 DLRDKAALEVVFAGTKF-----DAVIHFAG------LKAVGESVQKPLPYFDNNLTGTI- 110
D+ L F D +I+ AG G+ D NLTG I
Sbjct: 57 DVTSWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKTIDVNLTGVIN 116
Query: 111 TLLEVMAA----HGCKN--LVFSSSATAY 133
T + G K +V S
Sbjct: 117 TTYLALHYMDKNKGGKGGVIVNIGSVAGL 145
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 41/175 (23%), Positives = 62/175 (35%), Gaps = 31/175 (17%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
LV G IG +L G K V+ D N + +E+A + G N + D
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAAIE------ALGGNAVAVQAD 54
Query: 64 LRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTITL-- 112
+ D+ +E + + D +++ AG+ G + +D NLTG L
Sbjct: 55 VSDEEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTR 114
Query: 113 --LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICR 165
L M G +V SS PL Y SK +E + R
Sbjct: 115 AALPHMKKQGGGRIVNISSVAGLR-----------PLPGQAAYAASKAALEGLTR 158
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 15/147 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGN-NMTFHK 61
K LV G IG L G + VV + E A + G
Sbjct: 6 KVALVTGASSGIGRAIARALAREGARVVVAA--RRSEEEAAEALAAAIKEAGGGRAAAVA 63
Query: 62 LDLRDK-AALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLP-----YFDNNLTGTI 110
D+ D ++E + A + D +++ AG+ +++ D NL G
Sbjct: 64 ADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAF 123
Query: 111 TLL-EVMAAHGCKNLVFSSSATAYGWP 136
L + + +V SS G P
Sbjct: 124 LLTRAALPLMKKQRIVNISSVAGLGGP 150
|
Length = 251 |
| >gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG--YQGNNMTFH 60
+LV+G GYIG V +L+ GY V V S I KE G + F
Sbjct: 61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAR--EKSGIRGKNGKEDTKKELPGAEVVFG 118
Query: 61 KLDLRDKAALEVVFA--GTKFDAVI 83
D+ D +L V G D V+
Sbjct: 119 --DVTDADSLRKVLFSEGDPVDVVV 141
|
Length = 390 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 33/154 (21%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
+V GG +G TV +LL G K V++D L N+ VAK+ G+N F +D+
Sbjct: 5 AVVTGGASGLGLATVERLLAQGAKVVILD-LPNSPGETVAKL-------GDNCRFVPVDV 56
Query: 65 RD----KAALE-VVFAGTKFDAVIHFAGL----KAVGESVQKP--LPYFDN----NLTGT 109
KAAL + D V++ AG+ K + Q+P L F NL GT
Sbjct: 57 TSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIGT 116
Query: 110 ITLLEVMAAHGCKN----------LVFSSSATAY 133
++ + A KN ++ ++S A+
Sbjct: 117 FNVIRLAAGAMGKNEPDQGGERGVIINTASVAAF 150
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 72/312 (23%), Positives = 108/312 (34%), Gaps = 79/312 (25%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
IL+ G G +G+ + + L G ++ + D +LD
Sbjct: 2 KILITGANGQLGTE-LRRALPGEFEVIATDR-------------------------AELD 35
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ D A+ V T+ D VI+ A AV ++ +P F N TG L A G +
Sbjct: 36 ITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGAR- 94
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR--- 180
LV S+ + K P E +N YGRSKL EE V + + ++LR
Sbjct: 95 LVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEE---AVRAAGP--RHLILRTSW 149
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI--- 237
+ GE FV T+ K+ VV D
Sbjct: 150 VY----------GEYGNN-------FV----------KTMLRLAKEGKELKVVDDQYGSP 182
Query: 238 -HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK---IPLVKS 293
+ DLAD + L K + VY+L S E A + +G I + S
Sbjct: 183 TYTEDLADAILELLEKEKEGG----VYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIAS 238
Query: 294 G------RRPGD 299
+RP +
Sbjct: 239 AEYPTPAKRPAN 250
|
Length = 281 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 66/295 (22%), Positives = 102/295 (34%), Gaps = 50/295 (16%)
Query: 54 GNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLL 113
M H DL D ++L K D V + A V S + P D TG + LL
Sbjct: 59 KARMKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLL 118
Query: 114 EVMAAHGCKNLVF-----SSSATAYGWPKV-VPCTEEFPLQAMNPYGRSKLFIEEICRDV 167
E + HG + + S+ YG P +E P +PY +K+
Sbjct: 119 EAVRLHGQETGRQIKYYQAGSSEMYG--STPPPQSETTPFHPRSPYAVAKVA-------- 168
Query: 168 HRSDSEWKIILLRYFNPVGAHPSG----KGEDPRGIPNNLMPFVTQ---VAVGRRPA--- 217
+ W + Y G E PR N FVT+ AVGR
Sbjct: 169 ----AHW--YTVNYREAYGLFACNGILFNHESPRRGEN----FVTRKITRAVGRIKVGLQ 218
Query: 218 LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMV 277
+F + RD+ D + L++ + P + Y + T + +V E +
Sbjct: 219 KKLFLGNLDAS-----RDWGFAGDYVEAMWLMLQQ-EKP----DDYVVATEESHTVEEFL 268
Query: 278 -AAFEKASGKKIPLVKSGR---RPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
AF V+ RP + + + KA L WK K G +++ +
Sbjct: 269 EEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKVGFEQLVKM 323
|
Length = 340 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 61/299 (20%), Positives = 101/299 (33%), Gaps = 71/299 (23%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ V G G+IG + V +L G + +V + + V G + F +
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCE--AYARRLLVMGDLGQ----VLFVEF 54
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DLRD ++ G+ D VI+ G K + D ++ G L + G +
Sbjct: 55 DLRDDESIRKALEGS--DVVINLVGR----LYETKNFSFEDVHVEGPERLAKAAKEAGVE 108
Query: 123 NLV-FSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
L+ S A G P Y RSK EE R+ E I+
Sbjct: 109 RLIHIS----ALGADANSPS----------KYLRSKAEGEEAVREAFP---EATIV---- 147
Query: 182 FNPVGAHPS---GKGEDPRGIPNNLMPFVTQVAVGRR--PALTVFGTDYSTKDGTVVRDY 236
PS G+ + F+ + A P + G G
Sbjct: 148 ------RPSVVFGREDR----------FLNRFAKLLAFLPFPPLIG------GGQTKFQP 185
Query: 237 IHVVDLADGHIAALRKLDDPK-----VGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 290
++V D+A+ AL+ + VG +VY L ++E++ + +PL
Sbjct: 186 VYVGDVAEAIARALKDPETEGKTYELVGPKVYTL-----AELVELLRRLGGRKRRVLPL 239
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|215029 PLN00016, PLN00016, RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP 297
HV DLA + +PK +++N+ + + + M A KA+G +V P
Sbjct: 248 HVKDLASMFALVV---GNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYD--P 302
Query: 298 GDAEI------------VYASTEKAERELNWKAKYGIDEMCRDQWN 331
+AS KA+ EL W K+ + E +D++
Sbjct: 303 KAVGFGAKKAFPFRDQHFFASPRKAKEELGWTPKFDLVEDLKDRYE 348
|
Length = 378 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 30/159 (18%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD--NLDNASEIAVAKVKELAGYQGNNMTFH 60
K LV G IG V QL G TV++ +++ AV K++ +G ++ FH
Sbjct: 1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQA-AVEKLRA----EGLSVRFH 55
Query: 61 KLDLRD-----KAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP-------YFDNNLTG 108
+LD+ D AA V D +++ AG + P N G
Sbjct: 56 QLDVTDDASIEAAADFVEEKYGGLDILVNNAG--IAFKGFDDSTPTREQARETMKTNFFG 113
Query: 109 TI----TLLEVMAAHGCKNLVFSSS-----ATAYGWPKV 138
T+ LL ++ +V SS +AYG K
Sbjct: 114 TVDVTQALLPLLKKSPAGRIVNVSSGLGSLTSAYGVSKA 152
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 36/160 (22%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL 64
LV G G IG T +L G V+ D + A+E A A++ G D+
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALG-----VACDV 479
Query: 65 RDKAALEVVFAGTKFDAVIHFAGLKAV----GESVQKPL---------PYFDNNLTGTIT 111
D+AA++ F +A + F G+ V G ++ P+ FD N TG
Sbjct: 480 TDEAAVQAAFE----EAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFL 535
Query: 112 LL----EVMAAHGC---------KNLVFSS-SATAYGWPK 137
+ +M A G KN V + AYG K
Sbjct: 536 VAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAAK 575
|
Length = 681 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +L+ GG G G+ + + L K + + + D + + K Y + + F+
Sbjct: 5 KILLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDEKKQDDMRK-----KYNNSKLKFYIG 59
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+RD + ++ A D + H A LK V P+ N+ GT +LE A+G K
Sbjct: 60 DVRDYRS--ILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVK 117
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163
+V S+ A +P+ AM G SK +E++
Sbjct: 118 RVVCLSTDKAV-----------YPINAM---GISKAMMEKV 144
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
++ +L+ GG G +G ++L G +V+D V G
Sbjct: 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGL 64
Query: 61 KLDLRDKAALEVVF-----AGTKFDAVIHFAGL---KAVGE-SVQKPLPYFDNNLTGTI- 110
D+RD AA + D +++ AG+ A E S+++ D NL G
Sbjct: 65 AFDVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFN 124
Query: 111 ----TLLEVMAAHGCKNLVF-SSSATAYGWPKVVP 140
L ++ A +V +S A G V
Sbjct: 125 VTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVN 159
|
Length = 249 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV GG IG +L G+ V D L+ + AK AG + +KL
Sbjct: 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVAD-LNEETAKETAKEINQAGGKA---VAYKL 56
Query: 63 DLRDKAALE--VVFAGTKF---DAVIHFAGLKAV 91
D+ DK + + A KF D +++ AG+ +
Sbjct: 57 DVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVAPI 90
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I + G G +G V LL TV V + +Q + + +D
Sbjct: 1 KIAIAGATGTLGGPIVSALLASPGFTVTV--------LTRPSSTSSNEFQPSGVKVVPVD 52
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+L G DAVI G A+G+ Q + L++ A G K
Sbjct: 53 YASHESLVAALKG--VDAVISALGGAAIGD--Q-------------LKLIDAAIAAGVK 94
|
PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
K+IL+ GG G G + +LL Y K +++ + D + + + + + F
Sbjct: 5 KSILITGGTGSFGKAFISRLL-ENYNPKKIIIYSRDELKQWEMQQK-----FPAPCLRFF 58
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+RDK L G D V+H A LK V + P N+ G +++ +G
Sbjct: 59 IGDVRDKERLTRALRGV--DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG 116
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158
K +V S+ A P +N YG +KL
Sbjct: 117 VKRVVALSTDKA-----ANP---------INLYGATKL 140
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 100.0 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.97 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.96 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.95 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.95 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.95 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.94 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.93 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.93 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.92 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.92 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.92 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.92 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.92 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.92 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.92 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.91 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.91 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.91 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.91 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.91 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.9 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.9 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.9 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.89 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.89 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.89 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.89 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.89 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.88 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.88 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.88 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.88 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.87 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.87 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.87 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.87 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.87 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.87 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.87 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.86 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.86 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.86 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.86 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.86 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.86 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.86 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.86 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.86 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.85 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.85 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.85 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.85 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.85 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.85 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.85 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.85 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.85 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.85 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.85 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.85 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.84 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.84 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.84 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.84 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.84 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.84 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.84 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.84 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.84 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.83 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.83 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.82 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.82 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.81 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.81 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.81 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.81 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.81 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.81 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.81 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.8 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.8 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.8 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.79 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.79 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.79 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.79 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.77 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.77 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.76 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.75 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.75 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.74 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.72 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.72 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.71 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.71 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.7 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.7 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.69 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.69 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.69 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.69 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.68 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.68 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.68 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.67 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.66 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.65 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.64 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.63 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.62 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.61 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.59 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.54 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.54 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.53 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.52 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.51 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.5 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.49 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.43 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.4 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.4 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.4 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.37 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.37 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.26 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.22 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.21 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.18 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 99.16 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.06 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.97 | |
| PLN00106 | 323 | malate dehydrogenase | 98.97 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.91 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.88 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.78 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.72 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.68 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.67 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.59 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.58 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.51 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.43 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.41 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.37 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.32 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.27 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.25 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.17 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.13 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.11 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.03 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 98.01 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.91 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.91 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.9 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.87 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.87 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.81 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.8 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 97.79 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.78 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.75 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.72 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.67 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.65 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.65 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.64 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.63 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.62 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.61 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.6 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.6 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.6 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.59 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.58 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.57 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.53 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.52 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.48 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.44 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.43 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.42 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.41 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.39 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.38 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.36 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.36 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.36 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.34 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.34 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.33 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.3 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.29 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.29 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.28 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.27 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 97.27 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.26 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.26 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.26 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.25 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.18 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.18 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.17 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.16 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 97.16 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.09 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.09 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.05 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.04 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.03 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.03 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.0 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.98 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.97 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.97 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.97 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.94 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.93 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.92 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.91 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.89 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.88 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.87 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.83 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.83 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 96.82 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.79 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.76 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.76 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.75 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 96.67 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.65 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.65 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.64 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.63 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.62 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.61 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.6 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.56 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.54 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.54 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.54 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 96.53 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.52 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.51 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.51 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.5 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.48 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.47 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.47 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.47 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.45 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.42 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.41 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.41 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.41 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.41 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.41 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 96.39 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.37 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.37 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.37 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.36 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.36 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 96.32 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.31 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 96.29 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.28 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.27 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.27 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.24 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.22 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.22 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.21 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.21 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.2 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.19 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 96.17 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.16 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.16 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 96.15 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.14 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.14 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.13 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.13 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.12 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.09 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.08 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.05 | |
| PRK06988 | 312 | putative formyltransferase; Provisional | 96.02 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.02 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.02 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 96.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.99 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.98 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.98 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 95.95 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.94 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.94 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.92 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.91 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.9 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 95.88 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.85 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.84 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 95.84 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.83 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.8 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.78 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 95.77 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.76 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 95.74 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.74 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.73 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 95.72 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.7 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 95.69 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.68 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.67 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.63 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.61 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.61 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.58 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.58 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.57 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.56 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 95.55 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.55 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.55 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-62 Score=409.96 Aligned_cols=326 Identities=47% Similarity=0.838 Sum_probs=301.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+||||||.||||+|.|.+|++.||+|+++++-........... ...++.+|+.|.+.+.++|++.++|.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~---------~~~f~~gDi~D~~~L~~vf~~~~idaV 71 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL---------QFKFYEGDLLDRALLTAVFEENKIDAV 71 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc---------cCceEEeccccHHHHHHHHHhcCCCEE
Confidence 68999999999999999999999999999998776654433221 157999999999999999999899999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+||....+++.+.|.++|+.|+.+|.+|+++|++.++++|||-||+.|||.+...|++|+.|..|.++||.||.+.|+
T Consensus 72 iHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~ 151 (329)
T COG1087 72 VHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEE 151 (329)
T ss_pred EECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
++++++..+ ++++++||.+|+.|.+++|. |+...+. ..++|.+.+.+.|+.+.+.+||.++++++|..+||+|||.|
T Consensus 152 iL~d~~~a~-~~~~v~LRYFN~aGA~~~G~iGe~~~~~-thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~D 229 (329)
T COG1087 152 ILRDAAKAN-PFKVVILRYFNVAGACPDGTLGQRYPGA-TLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDD 229 (329)
T ss_pred HHHHHHHhC-CCcEEEEEecccccCCCCCccCCCCCCc-chHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhH
Confidence 999999987 79999999999999999987 8777665 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc-
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY- 320 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~- 320 (347)
+|++++.+++...+ .-...+||+++|+..|+.|+++.+.++.|.+++.+..+.+++++...+.|.+|+++.|||+|++
T Consensus 230 LA~aH~~Al~~L~~-~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~ 308 (329)
T COG1087 230 LADAHVLALKYLKE-GGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYD 308 (329)
T ss_pred HHHHHHHHHHHHHh-CCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccC
Confidence 99999999997554 2333799999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHh-hCCCCC
Q 040584 321 GIDEMCRDQWNWAS-KNPYGY 340 (347)
Q Consensus 321 ~~~~~i~~~~~~~~-~~~~~~ 340 (347)
++++.++++++|.. +++..|
T Consensus 309 ~L~~ii~~aw~W~~~~~~~g~ 329 (329)
T COG1087 309 DLEDIIKDAWDWHQQRHGDGY 329 (329)
T ss_pred CHHHHHHHHHHHhhhhcCCCC
Confidence 99999999999999 666543
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=364.00 Aligned_cols=315 Identities=29% Similarity=0.430 Sum_probs=274.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|++|||||.||||+++++.++++. .+|+.++.-.-.. ..+.+..+. ..++..++.+|+.|.+.+.+++++..+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAg--n~~~l~~~~--~~~~~~fv~~DI~D~~~v~~~~~~~~~D 76 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAG--NLENLADVE--DSPRYRFVQGDICDRELVDRLFKEYQPD 76 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccC--CHHHHHhhh--cCCCceEEeccccCHHHHHHHHHhcCCC
Confidence 689999999999999999999985 4467665432211 122222222 2568999999999999999999987899
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccccccCCCCC--CCCCCCCCCCCCCchhhhH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKV--VPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~~yg~~~~--~~~~e~~~~~~~~~Y~~sK 157 (347)
+|+|.|+-...+.+-..|...+++|+.||.+|++++++...+ ||+++||..|||.... ..++|.+|..|.+||+.||
T Consensus 77 ~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASK 156 (340)
T COG1088 77 AVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASK 156 (340)
T ss_pred eEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhh
Confidence 999999998888888999999999999999999999998754 9999999999998554 3799999999999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
++++.++++|.+.+ |+++++.|++|-||| ++.++ .++| ++.+++.|+ +++++| +|.+.|||
T Consensus 157 AasD~lVray~~TY-glp~~ItrcSNNYGP-----yqfpE----KlIP~~I~nal~g~--~lpvYG------dG~~iRDW 218 (340)
T COG1088 157 AASDLLVRAYVRTY-GLPATITRCSNNYGP-----YQFPE----KLIPLMIINALLGK--PLPVYG------DGLQIRDW 218 (340)
T ss_pred hhHHHHHHHHHHHc-CCceEEecCCCCcCC-----CcCch----hhhHHHHHHHHcCC--CCceec------CCcceeee
Confidence 99999999999997 999999999999998 44343 4777 677888887 567888 89999999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-----cccCCCCCCCchhhccChHHHH
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-----LVKSGRRPGDAEIVYASTEKAE 311 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~ 311 (347)
+||+|-++|+..+++. +..|++||++++...+-.|+++.|++.+|+..+ +.++..+++-.....+|.+|++
T Consensus 219 l~VeDh~~ai~~Vl~k----g~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~ 294 (340)
T COG1088 219 LYVEDHCRAIDLVLTK----GKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIK 294 (340)
T ss_pred EEeHhHHHHHHHHHhc----CcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHh
Confidence 9999999999999987 456899999999999999999999999998877 6777888888888889999999
Q ss_pred HhcCCcccccHHHHHHHHHHHHhhCCCCCCCC
Q 040584 312 RELNWKAKYGIDEMCRDQWNWASKNPYGYESP 343 (347)
Q Consensus 312 ~~lg~~p~~~~~~~i~~~~~~~~~~~~~~~~~ 343 (347)
++|||.|+.+|+++|+++++||..|+++++.-
T Consensus 295 ~eLgW~P~~~fe~GlrkTv~WY~~N~~Ww~~l 326 (340)
T COG1088 295 RELGWRPQETFETGLRKTVDWYLDNEWWWEPL 326 (340)
T ss_pred hhcCCCcCCCHHHHHHHHHHHHHhchHHHhhh
Confidence 99999999999999999999999999887653
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=352.96 Aligned_cols=340 Identities=59% Similarity=0.961 Sum_probs=312.8
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|.++||||||.||||+|.+-+|+++||.|++++.-..........+.++... +.++.++.+|+.|...++++|+...+|
T Consensus 1 ~~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~-~~~v~f~~~Dl~D~~~L~kvF~~~~fd 79 (343)
T KOG1371|consen 1 GGKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGE-GKSVFFVEGDLNDAEALEKLFSEVKFD 79 (343)
T ss_pred CCcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCC-CCceEEEEeccCCHHHHHHHHhhcCCc
Confidence 5689999999999999999999999999999988777665555555555432 468999999999999999999998999
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC-CCCchhhhHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ-AMNPYGRSKLF 159 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~-~~~~Y~~sK~~ 159 (347)
.|+|+|+.....++.++|..+++.|+.|+.++++.|++++++.+|+.||+.|||.+..-|++|+.|.. |.++|+.+|..
T Consensus 80 ~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~ 159 (343)
T KOG1371|consen 80 AVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKA 159 (343)
T ss_pred eEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
.|+++.++.+.. ++.++.||.++++|.+|++- ++.+.+.+.++.+.+.+++-++.+.+.++|.++..-+|+..+++||
T Consensus 160 iE~i~~d~~~~~-~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~ 238 (343)
T KOG1371|consen 160 IEEIIHDYNKAY-GWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIH 238 (343)
T ss_pred HHHHHHhhhccc-cceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccCCCeeeccee
Confidence 999999999887 59999999999999998887 7778888999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcc
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKA 318 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p 318 (347)
+-|+|+.+..++...... ...++||++.+...++.+|+..+++++|.+.++...+.+.+.....+.+.++++++|||+|
T Consensus 239 v~Dla~~h~~al~k~~~~-~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~elgwk~ 317 (343)
T KOG1371|consen 239 VLDLADGHVAALGKLRGA-AEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQRELGWKA 317 (343)
T ss_pred eEehHHHHHHHhhccccc-hheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHhCCcc
Confidence 999999999999985542 3345999999999999999999999999999998888899999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCCC
Q 040584 319 KYGIDEMCRDQWNWASKNPYGYESP 343 (347)
Q Consensus 319 ~~~~~~~i~~~~~~~~~~~~~~~~~ 343 (347)
.++++++++++++|..++++.|+..
T Consensus 318 ~~~iee~c~dlw~W~~~np~gy~~~ 342 (343)
T KOG1371|consen 318 KYGLQEMLKDLWRWQKQNPSGYDTK 342 (343)
T ss_pred ccCHHHHHHHHHHHHhcCCCcCCCC
Confidence 9999999999999999999998754
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=372.24 Aligned_cols=345 Identities=81% Similarity=1.302 Sum_probs=279.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|||||||||++|++.|+++|++|++++|...........+.........++.++.+|+.|.+.+.++++..++|+
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~ 84 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDA 84 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCE
Confidence 47999999999999999999999999999998765433222222222211113467889999999999999987657999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+|+.........++...+++|+.++.+++++|++.++++||++||..+||.....+++|+.+..+.++|+.+|.++|
T Consensus 85 vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e 164 (352)
T PLN02240 85 VIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLFIE 164 (352)
T ss_pred EEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 99999975443444567788999999999999999998889999999999998777778999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
.+++.++....+++++++|++++||+++++. |..+......+.+++.++..++.+.+.++|...++++|.+.++|||++
T Consensus 165 ~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 244 (352)
T PLN02240 165 EICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVM 244 (352)
T ss_pred HHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHH
Confidence 9999887653478999999999999987654 333333445566777777777666677777555555789999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCccc
Q 040584 241 DLADGHIAALRKLD-DPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAK 319 (347)
Q Consensus 241 D~a~a~~~~~~~~~-~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~ 319 (347)
|++++++.+++... .....+++||+++++++|++|+++.+.+.+|.+.++...+.++........|++|+++.|||+|+
T Consensus 245 D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~ 324 (352)
T PLN02240 245 DLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWKAK 324 (352)
T ss_pred HHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHHHHHhCCCCC
Confidence 99999998887521 11245689999999999999999999999998877665555555566677899999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCCCCCC
Q 040584 320 YGIDEMCRDQWNWASKNPYGYESPNST 346 (347)
Q Consensus 320 ~~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (347)
++++++|+++++|++++++.|.+...+
T Consensus 325 ~~l~~~l~~~~~~~~~~~~~~~~~~~~ 351 (352)
T PLN02240 325 YGIDEMCRDQWNWASKNPYGYGSSPET 351 (352)
T ss_pred CCHHHHHHHHHHHHHhCccccCCCCCC
Confidence 999999999999999999999876543
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=370.36 Aligned_cols=318 Identities=23% Similarity=0.350 Sum_probs=252.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHH-hhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKE-LAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+|||||||||||++|+++|+++|++|++++|...........+.. .......++.++.+|+.|.+.+.++++ ++|
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~--~~d 92 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK--NVD 92 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh--CCC
Confidence 47999999999999999999999999999998865433222221111 001112367889999999999999998 599
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+|+......+..++...+++|+.++.+++++|++.++++|||+||..+||.....+..|+.+..|.++|+.+|.++
T Consensus 93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~ 172 (348)
T PRK15181 93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVN 172 (348)
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCCCChhhHHHHHH
Confidence 99999997655445567778899999999999999999999999999999999976666777877778889999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++.+.+.+ +++++++||+++|||++. +.+....+++ ++.++..++ .+.++| +|.+.++|+|+
T Consensus 173 e~~~~~~~~~~-~~~~~~lR~~~vyGp~~~-----~~~~~~~~i~~~~~~~~~~~--~i~~~g------~g~~~rd~i~v 238 (348)
T PRK15181 173 ELYADVFARSY-EFNAIGLRYFNVFGRRQN-----PNGAYSAVIPRWILSLLKDE--PIYING------DGSTSRDFCYI 238 (348)
T ss_pred HHHHHHHHHHh-CCCEEEEEecceeCcCCC-----CCCccccCHHHHHHHHHcCC--CcEEeC------CCCceEeeEEH
Confidence 99999887775 899999999999999532 2222223444 566666655 355666 78999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCC------CcccCCCCCCCchhhccChHHHHHh
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI------PLVKSGRRPGDAEIVYASTEKAERE 313 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~------~~~~~~~~~~~~~~~~~d~~k~~~~ 313 (347)
+|+|++++.++.... ....+++||+++++.+|++|+++.+.+.++... .+...+.++.......+|++|+++.
T Consensus 239 ~D~a~a~~~~~~~~~-~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 317 (348)
T PRK15181 239 ENVIQANLLSATTND-LASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTF 317 (348)
T ss_pred HHHHHHHHHHHhccc-ccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHH
Confidence 999999988776411 113568999999999999999999999987321 1222333444555677999999999
Q ss_pred cCCcccccHHHHHHHHHHHHhhC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|||+|+++++|+|+++++|++.+
T Consensus 318 lGw~P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 318 LSYEPEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999876
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=356.47 Aligned_cols=334 Identities=54% Similarity=0.946 Sum_probs=267.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+||||+||||++|+++|+++|++|++++|...........+... ...++.++.+|+.|.+.+.++++..++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL---GGKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh---cCCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 58999999999999999999999999999876543322222222221 123567889999999999999876579999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC-CCCCchhhhHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIE 161 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~-~~~~~Y~~sK~~~e 161 (347)
||+|+........+.+.+.+++|+.++.+++++|++.++++||++||..+||.....+++|+.+. .|.+.|+.+|.++|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 157 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHH
Confidence 99999765433444566789999999999999999999999999999999987766778898886 68899999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
++++.+++...+++++++|++++|||++++. |....+....+.+++.++..+....+.++|...+.+++.+.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~ 237 (338)
T PRK10675 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_pred HHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHH
Confidence 9999987664578999999999999987655 433333334456667776666555566666555555788999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY 320 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~ 320 (347)
|++++++.+++... ....+++||+++++.+|+.|+++.+.+.+|.+.++...+..........+|++|+++.|||+|++
T Consensus 238 D~a~~~~~~~~~~~-~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~p~~ 316 (338)
T PRK10675 238 DLADGHVAAMEKLA-NKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR 316 (338)
T ss_pred HHHHHHHHHHHhhh-ccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCCCcC
Confidence 99999999987521 12345899999999999999999999999987766555544445566778999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCC
Q 040584 321 GIDEMCRDQWNWASKNPYGY 340 (347)
Q Consensus 321 ~~~~~i~~~~~~~~~~~~~~ 340 (347)
+++++++++++|+++++..|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~ 336 (338)
T PRK10675 317 TLDEMAQDTWHWQSRHPQGY 336 (338)
T ss_pred cHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999986653
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=346.19 Aligned_cols=315 Identities=20% Similarity=0.251 Sum_probs=245.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH-HHHHHHH-HhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE-IAVAKVK-ELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+||||||+||||++|+++|+++|++|++++|++.... .....+. ........+++++.+|++|.+.+.++++..++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 68999999999999999999999999999998764211 1111111 000001236789999999999999999876689
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC---eEEEeccccccCCCCCCCCCCCCCCCCCCchhhhH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK---NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~---~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK 157 (347)
+|||+|+..........+...+++|+.++.+++++|++.+++ +||++||..+||.....+.+|+.+..|.++|+.||
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 160 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAK 160 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCChhHHHH
Confidence 999999976544444556677888999999999999988753 89999999999976666788999989999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
.++|.+++.+++++ +++++.+|+.++|||.+. .......+..++.++..++... ..+| +|++.++|+
T Consensus 161 ~~~e~~~~~~~~~~-~~~~~~~~~~~~~gp~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~g------~g~~~rd~i 227 (343)
T TIGR01472 161 LYAHWITVNYREAY-GLFAVNGILFNHESPRRG-----ENFVTRKITRAAAKIKLGLQEK-LYLG------NLDAKRDWG 227 (343)
T ss_pred HHHHHHHHHHHHHh-CCceEEEeecccCCCCCC-----ccccchHHHHHHHHHHcCCCCc-eeeC------CCccccCce
Confidence 99999999998775 889999999999998421 1111222334555666665332 3345 789999999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc---------------------ccCCCC
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL---------------------VKSGRR 296 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~---------------------~~~~~~ 296 (347)
||+|++++++.++++. ..++||+++++++|+.|+++.+++.+|.+..+ ...+.+
T Consensus 228 ~V~D~a~a~~~~~~~~-----~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T TIGR01472 228 HAKDYVEAMWLMLQQD-----KPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFR 302 (343)
T ss_pred eHHHHHHHHHHHHhcC-----CCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccC
Confidence 9999999999988761 13689999999999999999999999965321 111224
Q ss_pred CCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhh
Q 040584 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 297 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~ 335 (347)
+........|++|+++.|||+|+++++|+|+++++++++
T Consensus 303 ~~~~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 303 PTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred CCccchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 444556678999999999999999999999999998874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=349.94 Aligned_cols=308 Identities=23% Similarity=0.348 Sum_probs=244.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+||||||+||||++|+++|+++|++|++++|......... ..... ..+++++.+|+.+.. +. ++|+|
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~---~~~~~--~~~~~~~~~Di~~~~-----~~--~~D~V 188 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENL---VHLFG--NPRFELIRHDVVEPI-----LL--EVDQI 188 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHh---hhhcc--CCceEEEECcccccc-----cc--CCCEE
Confidence 79999999999999999999999999999987643222111 11111 236778888987642 34 59999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC-----CCCCCCchhhhH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSK 157 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~-----~~~~~~~Y~~sK 157 (347)
||+|+.........++...+++|+.++.+++++|++.++ ++|++||.+|||.....+.+|+. |..+.+.|+.+|
T Consensus 189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK 267 (436)
T PLN02166 189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGK 267 (436)
T ss_pred EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHH
Confidence 999997654444456778899999999999999999886 89999999999976666777763 566778999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
.++|++++.+.+.. +++++++|++++|||+.. .. ....+..++.++..++ .+.++| ++++.++|+
T Consensus 268 ~~aE~~~~~y~~~~-~l~~~ilR~~~vYGp~~~-----~~-~~~~i~~~i~~~l~~~--~i~v~g------~g~~~rdfi 332 (436)
T PLN02166 268 RTAETLAMDYHRGA-GVEVRIARIFNTYGPRMC-----LD-DGRVVSNFVAQTIRKQ--PMTVYG------DGKQTRSFQ 332 (436)
T ss_pred HHHHHHHHHHHHHh-CCCeEEEEEccccCCCCC-----CC-ccchHHHHHHHHhcCC--CcEEeC------CCCeEEeeE
Confidence 99999999998775 899999999999998421 11 0112334667776655 355566 788999999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCc
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWK 317 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~ 317 (347)
|++|+++++..+++. . .+++||+++++.+|+.|+++.+.+.+|.+..+...+..........+|++|++++|||+
T Consensus 333 ~V~Dva~ai~~~~~~----~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~ 407 (436)
T PLN02166 333 YVSDLVDGLVALMEG----E-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWE 407 (436)
T ss_pred EHHHHHHHHHHHHhc----C-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCC
Confidence 999999999998875 1 23799999999999999999999999987666565555555566788999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCCCC
Q 040584 318 AKYGIDEMCRDQWNWASKNPYGYESP 343 (347)
Q Consensus 318 p~~~~~~~i~~~~~~~~~~~~~~~~~ 343 (347)
|+++++++++++++||+++-.+..+.
T Consensus 408 P~~sl~egl~~~i~~~~~~~~~~~~~ 433 (436)
T PLN02166 408 PKISLREGLPLMVSDFRNRILNEDEG 433 (436)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999998875554433
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=342.71 Aligned_cols=314 Identities=19% Similarity=0.296 Sum_probs=240.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR-DKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~~~ 79 (347)
||+|||||||||||++|+++|+++ ||+|++++|+..... .+.+ ..+++++.+|+. +.+.+.++++ ++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~-------~~~~--~~~~~~~~~Dl~~~~~~~~~~~~--~~ 69 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG-------DLVN--HPRMHFFEGDITINKEWIEYHVK--KC 69 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH-------Hhcc--CCCeEEEeCCCCCCHHHHHHHHc--CC
Confidence 468999999999999999999986 799999987543221 1111 246889999998 7777888887 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCC-------CCCCCc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP-------LQAMNP 152 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~-------~~~~~~ 152 (347)
|+|||+|+.........++...+++|+.++.+++++|++.+ ++|||+||..+||.....+++|+.+ ..|.+.
T Consensus 70 d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~ 148 (347)
T PRK11908 70 DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWI 148 (347)
T ss_pred CEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccch
Confidence 99999999765444556778889999999999999999987 6999999999999765556666542 146678
Q ss_pred hhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 153 YGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
|+.+|.++|++++.++.+. +++++++||+++|||+.........+....+..++.++..++. +.+++ ++++
T Consensus 149 Y~~sK~~~e~~~~~~~~~~-~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~------~g~~ 219 (347)
T PRK11908 149 YACSKQLMDRVIWAYGMEE-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEP--ISLVD------GGSQ 219 (347)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCc--eEEec------CCce
Confidence 9999999999999988765 8999999999999996443222111112223346666666653 45555 6889
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC-CcccHHHHHHHHHHHhCCCCCcc-------cC--CC------C
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG-KGTSVLEMVAAFEKASGKKIPLV-------KS--GR------R 296 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~-~~~s~~e~~~~i~~~~g~~~~~~-------~~--~~------~ 296 (347)
.++|||++|+++++..++++... ...+++||++++ +.+|++|+++.+++.+|..+.+. .. +. .
T Consensus 220 ~r~~i~v~D~a~a~~~~~~~~~~-~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (347)
T PRK11908 220 KRAFTDIDDGIDALMKIIENKDG-VASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKG 298 (347)
T ss_pred eeccccHHHHHHHHHHHHhCccc-cCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcC
Confidence 99999999999999999986211 134689999986 57999999999999998543321 00 00 0
Q ss_pred CCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 297 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
.........|++|+++.|||+|+++++++++++++|++.+.
T Consensus 299 ~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~ 339 (347)
T PRK11908 299 YQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHV 339 (347)
T ss_pred cchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 11223455789999999999999999999999999998764
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=338.10 Aligned_cols=316 Identities=20% Similarity=0.201 Sum_probs=245.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+||||||+||||++|+++|+++|++|+++.|..... ....+.+.........++.++.+|++|.+++.++++..++|
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 85 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKPD 85 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCCC
Confidence 58899999999999999999999999999998865421 11111111000001235788999999999999999876689
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-----eEEEeccccccCCCCCCCCCCCCCCCCCCchhh
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-----NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGR 155 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-----~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~ 155 (347)
+|||+|+.........++...+++|+.++.+++++|++.+++ +||++||..+||.... +++|+.+..|.+.|+.
T Consensus 86 ~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~~p~~~Y~~ 164 (340)
T PLN02653 86 EVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPFHPRSPYAV 164 (340)
T ss_pred EEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCCCCCChhHH
Confidence 999999976544445566778899999999999999988764 8999999999997654 7889999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 156 SKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
||.++|.+++.++.++ ++.++..|+.++|||.. ........+..++.++..++... ..+| ++++.++
T Consensus 165 sK~~~e~~~~~~~~~~-~~~~~~~~~~~~~gp~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~g~~~rd 231 (340)
T PLN02653 165 AKVAAHWYTVNYREAY-GLFACNGILFNHESPRR-----GENFVTRKITRAVGRIKVGLQKK-LFLG------NLDASRD 231 (340)
T ss_pred HHHHHHHHHHHHHHHc-CCeEEEeeeccccCCCC-----CcccchhHHHHHHHHHHcCCCCc-eEeC------CCcceec
Confidence 9999999999998775 88889999999999842 11111112223344555554322 2335 7899999
Q ss_pred eeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCC--Ccc--cCCCCCCCchhhccChHHHH
Q 040584 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI--PLV--KSGRRPGDAEIVYASTEKAE 311 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~--~~~--~~~~~~~~~~~~~~d~~k~~ 311 (347)
|+|++|+|++++.+++. . .+++||+++++++|+.|+++.+++.+|.+. .+. ..+..+.......+|++|++
T Consensus 232 ~i~v~D~a~a~~~~~~~---~--~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 306 (340)
T PLN02653 232 WGFAGDYVEAMWLMLQQ---E--KPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAR 306 (340)
T ss_pred ceeHHHHHHHHHHHHhc---C--CCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHH
Confidence 99999999999999986 1 237899999999999999999999999642 222 22234555566778999999
Q ss_pred HhcCCcccccHHHHHHHHHHHHhhC
Q 040584 312 RELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 312 ~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
+.|||+|+++++|+|+++++|+++.
T Consensus 307 ~~lgw~p~~~l~~gi~~~~~~~~~~ 331 (340)
T PLN02653 307 EVLGWKPKVGFEQLVKMMVDEDLEL 331 (340)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=345.93 Aligned_cols=324 Identities=23% Similarity=0.246 Sum_probs=238.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH-------------HHHHHHHhhccCCCCeEEEecCCCCH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI-------------AVAKVKELAGYQGNNMTFHKLDLRDK 67 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~Dl~d~ 67 (347)
++|+||||||+||||++|+++|+++|++|++++|....... ..+.+..+......+++++.+|++|.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d~ 125 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICDF 125 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCCH
Confidence 46899999999999999999999999999998753221100 00111111100123688999999999
Q ss_pred HHHHHHHccCCCcEEEEccccccCCccccC---cchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccccccCCCCCCCCC-
Q 040584 68 AALEVVFAGTKFDAVIHFAGLKAVGESVQK---PLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKVVPCT- 142 (347)
Q Consensus 68 ~~~~~~~~~~~~d~vih~a~~~~~~~~~~~---~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~~yg~~~~~~~~- 142 (347)
+.+.+++++.++|+|||+|+.........+ +...+++|+.++.+++++|++.+++ +||++||..+||... .+++
T Consensus 126 ~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~~~E 204 (442)
T PLN02572 126 EFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-IDIEE 204 (442)
T ss_pred HHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CCCcc
Confidence 999999987679999999986543323222 2456789999999999999998885 999999999998643 1222
Q ss_pred ----------CC---CCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCC--------CCC-C
Q 040584 143 ----------EE---FPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDP--------RGI-P 200 (347)
Q Consensus 143 ----------e~---~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~--------~~~-~ 200 (347)
|+ .+..|.++|+.+|.++|.+++.+++.+ +++++++||++||||+.......+ .+. .
T Consensus 205 ~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~-gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~ 283 (442)
T PLN02572 205 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFG 283 (442)
T ss_pred cccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc-CCCEEEEecccccCCCCcccccccccccccCcccchh
Confidence 22 255678899999999999999988875 999999999999999643210000 000 1
Q ss_pred CccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCC--CeeEEccCCCcccHHHHHH
Q 040584 201 NNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVG--CEVYNLGTGKGTSVLEMVA 278 (347)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~--~~~~nv~~~~~~s~~e~~~ 278 (347)
..+..++.++..|+ .+.++| +|++.|+|+||+|++++++.++++. ... ..+||+++ +.+|+.|+++
T Consensus 284 ~~i~~~~~~~~~g~--~i~v~g------~G~~~Rdfi~V~Dva~a~~~al~~~---~~~g~~~i~Nigs-~~~si~el~~ 351 (442)
T PLN02572 284 TALNRFCVQAAVGH--PLTVYG------KGGQTRGFLDIRDTVRCIEIAIANP---AKPGEFRVFNQFT-EQFSVNELAK 351 (442)
T ss_pred hHHHHHHHHHhcCC--CceecC------CCCEEECeEEHHHHHHHHHHHHhCh---hhcCceeEEEeCC-CceeHHHHHH
Confidence 11233566666665 355666 7899999999999999999998751 122 26899976 6799999999
Q ss_pred HHHHH---hCCCCCcccCCC--CCCCchhhccChHHHHHhcCCcccc---cHHHHHHHHHHHHhhCCCC
Q 040584 279 AFEKA---SGKKIPLVKSGR--RPGDAEIVYASTEKAERELNWKAKY---GIDEMCRDQWNWASKNPYG 339 (347)
Q Consensus 279 ~i~~~---~g~~~~~~~~~~--~~~~~~~~~~d~~k~~~~lg~~p~~---~~~~~i~~~~~~~~~~~~~ 339 (347)
.+++. +|.+..+...+. ..........|++|+++ |||+|++ ++++++.+++.||+.+.+.
T Consensus 352 ~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l~~~~~~~~~~~~~ 419 (442)
T PLN02572 352 LVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSLLNFAVKYKDRVDT 419 (442)
T ss_pred HHHHHHHhhCCCCCeeeCCCCcccccccccCccHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHhhcch
Confidence 99999 887665544332 22333455679999975 9999999 9999999999999876543
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=339.28 Aligned_cols=311 Identities=27% Similarity=0.410 Sum_probs=242.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEE-EeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVV-VDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
||+|||||||||||++|++.|+++|+++++ ++|...... ...+.... ...++.++.+|++|.+++.+++++.++|
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~D 76 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN--LMSLAPVA--QSERFAFEKVDICDRAELARVFTEHQPD 76 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccc--hhhhhhcc--cCCceEEEECCCcChHHHHHHHhhcCCC
Confidence 478999999999999999999999988654 444322111 01111110 1235778899999999999999865699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc---------CCCeEEEeccccccCCCC--CCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH---------GCKNLVFSSSATAYGWPK--VVPCTEEFPLQA 149 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~---------~~~~iv~~SS~~~yg~~~--~~~~~e~~~~~~ 149 (347)
+|||+||........+.+..++++|+.++.+++++|++. ++++||++||..+||... ..+++|+.+..|
T Consensus 77 ~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p 156 (355)
T PRK10217 77 CVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAP 156 (355)
T ss_pred EEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCC
Confidence 999999976544344567889999999999999999862 467999999999998642 346888888888
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
.+.|+.||.++|.+++.++++. +++++++||+++|||+ ..+ ..+++ ++.+...+. .+.++|
T Consensus 157 ~s~Y~~sK~~~e~~~~~~~~~~-~~~~~i~r~~~v~Gp~-----~~~----~~~~~~~~~~~~~~~--~~~~~g------ 218 (355)
T PRK10217 157 SSPYSASKASSDHLVRAWLRTY-GLPTLITNCSNNYGPY-----HFP----EKLIPLMILNALAGK--PLPVYG------ 218 (355)
T ss_pred CChhHHHHHHHHHHHHHHHHHh-CCCeEEEeeeeeeCCC-----CCc----ccHHHHHHHHHhcCC--CceEeC------
Confidence 9999999999999999998775 8999999999999984 211 12343 555555554 345556
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC------------cccCCCC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP------------LVKSGRR 296 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~------------~~~~~~~ 296 (347)
++++.++|+|++|+++++..+++. ...+++||+++++.+|++|+++.+++.+|...+ +...+.+
T Consensus 219 ~g~~~~~~i~v~D~a~a~~~~~~~----~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T PRK10217 219 NGQQIRDWLYVEDHARALYCVATT----GKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADR 294 (355)
T ss_pred CCCeeeCcCcHHHHHHHHHHHHhc----CCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCC
Confidence 789999999999999999998876 234589999999999999999999999885321 1112223
Q ss_pred CCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 297 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+.....+.+|++|+++.|||+|+++++|+|+++++||+.+..
T Consensus 295 ~~~~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 295 PGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred CCCCcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 333455678999999999999999999999999999998854
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=335.21 Aligned_cols=315 Identities=25% Similarity=0.300 Sum_probs=245.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||+++++.|+++|++|++++|+..........+. . ..++.++.+|++|.+++.++++..++|+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-L----AKKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-h----cCCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 5899999999999999999999999999999987654332222111 1 2357788999999999999998767899
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCC-CCCCCCCCCCCCCCchhhhHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPK-VVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~-~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|||+||......+..++...+++|+.++.+++++|+..+ +++||++||..+||... ..+++|+.+..|.++|+.+|.+
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~ 158 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKAC 158 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHH
Confidence 999999655444556778899999999999999999876 78999999999998643 2457788888889999999999
Q ss_pred HHHHHHHHhhhc------CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCce
Q 040584 160 IEEICRDVHRSD------SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 160 ~e~~~~~~~~~~------~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
+|.+++.+++++ .+++++++||+++|||+. .. ...+.+ ++.....|+. +.+ + ++++
T Consensus 159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~-----~~---~~~~~~~~~~~~~~g~~--~~~-~------~g~~ 221 (349)
T TIGR02622 159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGGD-----WA---EDRLIPDVIRAFSSNKI--VII-R------NPDA 221 (349)
T ss_pred HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCc-----ch---hhhhhHHHHHHHhcCCC--eEE-C------CCCc
Confidence 999999887654 279999999999999842 11 112344 5566666543 332 3 5889
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCC-CCCCeeEEccCC--CcccHHHHHHHHHHHhCC-CCCccc--CCCCCCCchhhccC
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDP-KVGCEVYNLGTG--KGTSVLEMVAAFEKASGK-KIPLVK--SGRRPGDAEIVYAS 306 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~-~~~~~~~nv~~~--~~~s~~e~~~~i~~~~g~-~~~~~~--~~~~~~~~~~~~~d 306 (347)
.++|+|++|++++++.+++..... ...+++||++++ ++.|+.|+++.+.+.++. +..+.. .+..+.......+|
T Consensus 222 ~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 301 (349)
T TIGR02622 222 TRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLD 301 (349)
T ss_pred ccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecC
Confidence 999999999999999888752111 123589999874 689999999999987763 333322 22334445566789
Q ss_pred hHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 307 TEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
++|++++|||+|+++++++|+++++|++++..
T Consensus 302 ~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~~~ 333 (349)
T TIGR02622 302 SSKARTLLGWHPRWGLEEAVSRTVDWYKAWLR 333 (349)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988744
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=340.94 Aligned_cols=317 Identities=17% Similarity=0.289 Sum_probs=233.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|+|||||||||||++|+++|+++ |++|++++|+.......... . ......+++++.+|+.|.+.+.++++ ++|+
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~-~--~~~~~~~~~~~~~Dl~d~~~l~~~~~--~~d~ 89 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEP-D--TVPWSGRIQFHRINIKHDSRLEGLIK--MADL 89 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcc-c--cccCCCCeEEEEcCCCChHHHHHHhh--cCCE
Confidence 68999999999999999999998 59999998865432211110 0 00012468899999999999999998 5999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC--------------
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-------------- 147 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~-------------- 147 (347)
|||+|+.........++.+.+..|+.++.+++++|++.+ ++||++||..+||.....+.+|+.|.
T Consensus 90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~ 168 (386)
T PLN02427 90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDES 168 (386)
T ss_pred EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCccccccccccccccccccc
Confidence 999999754433334556677889999999999999887 79999999999986433233332221
Q ss_pred --------CCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCC-CC-CCCCCCCccHH-HHHHHHcCCCC
Q 040584 148 --------QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GE-DPRGIPNNLMP-FVTQVAVGRRP 216 (347)
Q Consensus 148 --------~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~~~ 216 (347)
.+.+.|+.+|.++|++++.+++.. +++++++||++||||+.... +. .+......++. ++.++..++
T Consensus 169 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 245 (386)
T PLN02427 169 PCIFGSIEKQRWSYACAKQLIERLIYAEGAEN-GLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRE-- 245 (386)
T ss_pred ccccCCCCccccchHHHHHHHHHHHHHHHhhc-CCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCC--
Confidence 234689999999999999887764 89999999999999964321 10 01111122333 445555554
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC-CcccHHHHHHHHHHHhCCCC--C---c
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG-KGTSVLEMVAAFEKASGKKI--P---L 290 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~-~~~s~~e~~~~i~~~~g~~~--~---~ 290 (347)
.+.++| ++.+.++||||+|++++++.++++.. ...+++||++++ +.+|+.|+++.+.+.+|... + .
T Consensus 246 ~~~~~g------~g~~~r~~i~V~Dva~ai~~al~~~~--~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~ 317 (386)
T PLN02427 246 PLKLVD------GGQSQRTFVYIKDAIEAVLLMIENPA--RANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEE 317 (386)
T ss_pred CeEEEC------CCCceECcEeHHHHHHHHHHHHhCcc--cccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccc
Confidence 345566 67889999999999999999988621 134689999987 58999999999999998421 1 1
Q ss_pred c--cCCC------CCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 291 V--KSGR------RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 291 ~--~~~~------~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
. ..+. ..........|++|++++|||+|+++++++|+++++|++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~ 371 (386)
T PLN02427 318 PTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKT 371 (386)
T ss_pred cccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHH
Confidence 0 0111 11234566789999999999999999999999999998764
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=341.48 Aligned_cols=300 Identities=23% Similarity=0.354 Sum_probs=237.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||||||||||++|+++|+++|++|++++|....... .+.... ...+++++.+|+.+.. +. ++|+|
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~---~~~~~~--~~~~~~~i~~D~~~~~-----l~--~~D~V 187 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE---NVMHHF--SNPNFELIRHDVVEPI-----LL--EVDQI 187 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh---hhhhhc--cCCceEEEECCccChh-----hc--CCCEE
Confidence 799999999999999999999999999999875432211 111111 1246788889987653 33 59999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC-----CCCCCCchhhhH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSK 157 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~-----~~~~~~~Y~~sK 157 (347)
||+|+.........++...+++|+.++.+++++|++.++ +||++||..+||.....+.+|+. |..+.+.|+.+|
T Consensus 188 iHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK 266 (442)
T PLN02206 188 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGK 266 (442)
T ss_pred EEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHH
Confidence 999997654344456778999999999999999999886 89999999999876666666653 455678899999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
.++|++++.+.+.. +++++++||+++|||+.. .. ...++ .++.+...++ .+.++| ++++.++|
T Consensus 267 ~~aE~~~~~y~~~~-g~~~~ilR~~~vyGp~~~-----~~--~~~~v~~~i~~~l~~~--~i~i~g------~G~~~rdf 330 (442)
T PLN02206 267 RTAETLTMDYHRGA-NVEVRIARIFNTYGPRMC-----ID--DGRVVSNFVAQALRKE--PLTVYG------DGKQTRSF 330 (442)
T ss_pred HHHHHHHHHHHHHh-CCCeEEEEeccccCCCCC-----cc--ccchHHHHHHHHHcCC--CcEEeC------CCCEEEeE
Confidence 99999999987764 899999999999998421 11 11233 4566666554 345566 78899999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNW 316 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~ 316 (347)
+|++|++++++.+++. . .+++||+++++.+|+.|+++.+.+.+|.+..+...+..........+|++|++++|||
T Consensus 331 i~V~Dva~ai~~a~e~---~--~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw 405 (442)
T PLN02206 331 QFVSDLVEGLMRLMEG---E--HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGW 405 (442)
T ss_pred EeHHHHHHHHHHHHhc---C--CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCC
Confidence 9999999999998875 1 2368999999999999999999999987666555554445556677899999999999
Q ss_pred cccccHHHHHHHHHHHHhhC
Q 040584 317 KAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~~~~~ 336 (347)
+|+++++|+|+++++||+..
T Consensus 406 ~P~~~l~egl~~~~~~~~~~ 425 (442)
T PLN02206 406 EPKVSLRQGLPLMVKDFRQR 425 (442)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999764
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=328.27 Aligned_cols=327 Identities=50% Similarity=0.821 Sum_probs=259.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
+|+||||+|+||+++++.|+++|++|++++|.............. ..+++.+.+|+.+.+++.++++..++|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER-----ITRVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc-----ccceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999999999999887644332211111110 115678899999999999998755799999
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 163 (347)
|+||..........+...++.|+.++.+++++|++.+++++|++||..+||.....+++|+.+..+.+.|+.+|..+|.+
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~~~e~~ 155 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERI 155 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHHHHHHH
Confidence 99997654445556677889999999999999999888899999999999877667889999888999999999999999
Q ss_pred HHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHH
Q 040584 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243 (347)
Q Consensus 164 ~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a 243 (347)
++.++++..+++++++||+++|||.+++...........+.+.+.....+....+.++|..++++++++.++|||++|++
T Consensus 156 ~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a 235 (328)
T TIGR01179 156 LRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLA 235 (328)
T ss_pred HHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHH
Confidence 99987763489999999999999976554222111223355555555554445566667666666788999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCccccc-H
Q 040584 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYG-I 322 (347)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~-~ 322 (347)
+++..++.... ....+++||+++++++|++|+++.+++.+|.+.++...+..........+|++|++++|||+|+++ +
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~l 314 (328)
T TIGR01179 236 DAHLAALEYLL-NGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTDL 314 (328)
T ss_pred HHHHHHHhhhh-cCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcchH
Confidence 99999987522 124568999999999999999999999999887665444444444556689999999999999997 9
Q ss_pred HHHHHHHHHHHhhC
Q 040584 323 DEMCRDQWNWASKN 336 (347)
Q Consensus 323 ~~~i~~~~~~~~~~ 336 (347)
+++|+++++|+++|
T Consensus 315 ~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 315 EIIIKTAWRWESRN 328 (328)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999886
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=357.59 Aligned_cols=320 Identities=18% Similarity=0.251 Sum_probs=244.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHH-HHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAA-LEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~~~ 79 (347)
+|+|||||||||||++|+++|+++ ||+|++++|.+..... +. ...+++++.+|++|... +.++++ ++
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~-------~~--~~~~~~~~~gDl~d~~~~l~~~l~--~~ 383 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR-------FL--GHPRFHFVEGDISIHSEWIEYHIK--KC 383 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh-------hc--CCCceEEEeccccCcHHHHHHHhc--CC
Confidence 478999999999999999999986 7999999987543211 10 12368889999998655 567777 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC-------CCCCc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-------QAMNP 152 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~-------~~~~~ 152 (347)
|+|||+||.........++...+++|+.++.+++++|++.+ ++|||+||.++||.....+++|+.+. .|.+.
T Consensus 384 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~ 462 (660)
T PRK08125 384 DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWI 462 (660)
T ss_pred CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccc
Confidence 99999999765544555677889999999999999999987 79999999999997666677887642 34568
Q ss_pred hhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 153 YGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
|+.||.++|.+++.+++.+ +++++++||+++|||+.........+....+..++.++..++ .+.++| ++++
T Consensus 463 Yg~sK~~~E~~~~~~~~~~-g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~--~i~~~g------~g~~ 533 (660)
T PRK08125 463 YSVSKQLLDRVIWAYGEKE-GLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGS--PIKLVD------GGKQ 533 (660)
T ss_pred hHHHHHHHHHHHHHHHHhc-CCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCC--CeEEeC------CCce
Confidence 9999999999999998775 899999999999999542211100011122334566666655 345556 7899
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC-cccHHHHHHHHHHHhCCCCC-cccCCCC--------------
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK-GTSVLEMVAAFEKASGKKIP-LVKSGRR-------------- 296 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~-~~s~~e~~~~i~~~~g~~~~-~~~~~~~-------------- 296 (347)
.++|+|++|++++++.++++.. ....+++||+++++ .+|++|+++.+.+.+|.... +...+..
T Consensus 534 ~rd~i~v~Dva~a~~~~l~~~~-~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (660)
T PRK08125 534 KRCFTDIRDGIEALFRIIENKD-NRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKG 612 (660)
T ss_pred eeceeeHHHHHHHHHHHHhccc-cccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccc
Confidence 9999999999999999988621 12356899999885 79999999999999985421 1111100
Q ss_pred CCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCCCCCC
Q 040584 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESP 343 (347)
Q Consensus 297 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~~~~~ 343 (347)
........+|++|+++.|||+|+++++++|+++++|++++-.-+++.
T Consensus 613 ~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~~~~ 659 (660)
T PRK08125 613 YQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLTEKA 659 (660)
T ss_pred cccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcccccccC
Confidence 01233456799999999999999999999999999999887666554
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=332.85 Aligned_cols=304 Identities=21% Similarity=0.255 Sum_probs=237.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|||||||||||++|++.|+++||+|++++|....... . ......++.+|+.|.+.+.++++ ++|+
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~------~----~~~~~~~~~~Dl~d~~~~~~~~~--~~D~ 88 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS------E----DMFCHEFHLVDLRVMENCLKVTK--GVDH 88 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc------c----ccccceEEECCCCCHHHHHHHHh--CCCE
Confidence 3899999999999999999999999999999886432110 0 01134678899999999988887 5999
Q ss_pred EEEccccccCC-ccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCC----CCCCCCC--CCCCCCchh
Q 040584 82 VIHFAGLKAVG-ESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKV----VPCTEEF--PLQAMNPYG 154 (347)
Q Consensus 82 vih~a~~~~~~-~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~----~~~~e~~--~~~~~~~Y~ 154 (347)
|||+|+..... ....++...+..|+.++.+++++|++.++++|||+||..+||.... .+++|+. |..|.+.|+
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg 168 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYG 168 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHH
Confidence 99999865321 1223445567789999999999999999999999999999986432 2455654 678889999
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 155 RSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
.+|.++|.+++.+.+.+ +++++++||+++|||+..+. .....+. .++.++..+. ..+.++| ++++.
T Consensus 169 ~sK~~~E~~~~~~~~~~-g~~~~ilR~~~vyGp~~~~~-----~~~~~~~~~~~~~~~~~~-~~i~~~g------~g~~~ 235 (370)
T PLN02695 169 LEKLATEELCKHYTKDF-GIECRIGRFHNIYGPFGTWK-----GGREKAPAAFCRKALTST-DEFEMWG------DGKQT 235 (370)
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEECCccCCCCCcc-----ccccccHHHHHHHHHcCC-CCeEEeC------CCCeE
Confidence 99999999999988765 99999999999999853221 1011122 3555554432 3466666 78999
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHh
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERE 313 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 313 (347)
++|+|++|+++++..+++. . .+++||+++++.+|++|+++.+++.+|.+.++...+... .......|++|+++.
T Consensus 236 r~~i~v~D~a~ai~~~~~~----~-~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~-~~~~~~~d~sk~~~~ 309 (370)
T PLN02695 236 RSFTFIDECVEGVLRLTKS----D-FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE-GVRGRNSDNTLIKEK 309 (370)
T ss_pred EeEEeHHHHHHHHHHHHhc----c-CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCC-CccccccCHHHHHHh
Confidence 9999999999999988765 1 247999999999999999999999999766654443222 223456899999999
Q ss_pred cCCcccccHHHHHHHHHHHHhhC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|||+|+++++++|+++++|++++
T Consensus 310 lgw~p~~~l~e~i~~~~~~~~~~ 332 (370)
T PLN02695 310 LGWAPTMRLKDGLRITYFWIKEQ 332 (370)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=329.96 Aligned_cols=310 Identities=26% Similarity=0.403 Sum_probs=239.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|+|||||||||||++|+++|+++|++ |+++++...... ...+..+. ...++.++.+|++|.+++.+++++.++|+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLADVS--DSERYVFEHADICDRAELDRIFAQHQPDA 76 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHHhcc--cCCceEEEEecCCCHHHHHHHHHhcCCCE
Confidence 58999999999999999999999976 555554322111 11111111 12357788999999999999998656999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc---------CCCeEEEeccccccCCCC---------C-CCCC
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH---------GCKNLVFSSSATAYGWPK---------V-VPCT 142 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~---------~~~~iv~~SS~~~yg~~~---------~-~~~~ 142 (347)
|||+||..........+..++++|+.++.+++++|++. +++++|++||.++||... . .+++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~ 156 (352)
T PRK10084 77 VMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFT 156 (352)
T ss_pred EEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcc
Confidence 99999976443344566789999999999999999874 456999999999998631 1 2468
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEe
Q 040584 143 EEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVF 221 (347)
Q Consensus 143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 221 (347)
|+.+..|.+.|+.||.++|.+++.+++.+ +++++++|+++||||+. .. ..+++ ++.++..+. .+.++
T Consensus 157 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-g~~~vilr~~~v~Gp~~-----~~----~~~~~~~~~~~~~~~--~~~~~ 224 (352)
T PRK10084 157 ETTAYAPSSPYSASKASSDHLVRAWLRTY-GLPTIVTNCSNNYGPYH-----FP----EKLIPLVILNALEGK--PLPIY 224 (352)
T ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHh-CCCEEEEeccceeCCCc-----Cc----cchHHHHHHHHhcCC--CeEEe
Confidence 88888999999999999999999988775 89999999999999842 11 12343 455555443 35555
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc--------ccC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL--------VKS 293 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~--------~~~ 293 (347)
| ++++.++|+|++|+++++..++++ ...+++||+++++++|+.|+++.+++.+|...+. ...
T Consensus 225 ~------~g~~~~~~v~v~D~a~a~~~~l~~----~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~ 294 (352)
T PRK10084 225 G------KGDQIRDWLYVEDHARALYKVVTE----GKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYV 294 (352)
T ss_pred C------CCCeEEeeEEHHHHHHHHHHHHhc----CCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhcccc
Confidence 6 788999999999999999988875 2345899999999999999999999999853221 111
Q ss_pred CCCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 294 GRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 294 ~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+.++.......+|++|+++.|||+|+++++++|+++++|+++++.
T Consensus 295 ~~~~~~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 295 ADRPGHDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred ccCCCCCceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 122333345568999999999999999999999999999999854
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=300.30 Aligned_cols=308 Identities=29% Similarity=0.448 Sum_probs=252.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+.++||||+||||++.+..+..+ .+..+.++.-.--.. ...++.. ...++..++.+|+.+...+..++....+|
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~--~n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPV--RNSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhh--ccCCCceEeeccccchHHHHhhhccCchh
Confidence 67999999999999999999987 455554432211111 1111111 12568899999999999999998877899
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCCCCCCCCC-CCCCCCCCCchhhhHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGWPKVVPCT-EEFPLQAMNPYGRSKL 158 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~~~~~~~~-e~~~~~~~~~Y~~sK~ 158 (347)
.|+|.|+......+..++.+....|+.++..|+++++.. ++++|||+||..|||+.+..... |.....|.++|+.+|+
T Consensus 83 ~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKa 162 (331)
T KOG0747|consen 83 TVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKA 162 (331)
T ss_pred hhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHH
Confidence 999999998887888888888999999999999999998 48899999999999998776655 8888999999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
++|.++++|.+++ +++++++|.++||||++. +. .+++ ++.....++ +.++.| +|.+.+.|+
T Consensus 163 AaE~~v~Sy~~sy-~lpvv~~R~nnVYGP~q~-----~~----klipkFi~l~~~~~--~~~i~g------~g~~~rs~l 224 (331)
T KOG0747|consen 163 AAEMLVRSYGRSY-GLPVVTTRMNNVYGPNQY-----PE----KLIPKFIKLAMRGK--EYPIHG------DGLQTRSYL 224 (331)
T ss_pred HHHHHHHHHhhcc-CCcEEEEeccCccCCCcC-----hH----HHhHHHHHHHHhCC--Ccceec------CcccceeeE
Confidence 9999999999997 999999999999999542 22 2444 555555555 455667 899999999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-------cccCCCCCCCchhhccChHHH
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-------LVKSGRRPGDAEIVYASTEKA 310 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-------~~~~~~~~~~~~~~~~d~~k~ 310 (347)
|++|+++++..+++. +..|++||+++....+..|+++.+++.+.+..+ +..++.++.......+|.+|+
T Consensus 225 ~veD~~ea~~~v~~K----g~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKi 300 (331)
T KOG0747|consen 225 YVEDVSEAFKAVLEK----GELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKI 300 (331)
T ss_pred eHHHHHHHHHHHHhc----CCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHH
Confidence 999999999999887 456799999999999999999999998876322 233555666667788999999
Q ss_pred HHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 311 ERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 311 ~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
+ .|||+|+++|+++|+.+++||.++-
T Consensus 301 k-~LGw~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 301 K-KLGWRPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred H-hcCCcccCcHHHHHHHHHHHHHhhh
Confidence 7 8999999999999999999998774
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=350.54 Aligned_cols=313 Identities=27% Similarity=0.426 Sum_probs=246.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.|+|||||||||||++|+++|+++ |++|++++|...... ...+... ....+++++.+|+.|.+.+..++...++
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~--~~~l~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 81 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSN--LKNLNPS--KSSPNFKFVKGDIASADLVNYLLITEGI 81 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccch--hhhhhhc--ccCCCeEEEECCCCChHHHHHHHhhcCC
Confidence 489999999999999999999998 689999887532111 0111110 0134788999999999988877754479
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCC---CCCCCCCCCCCchhh
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVP---CTEEFPLQAMNPYGR 155 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~---~~e~~~~~~~~~Y~~ 155 (347)
|+|||+|+.........++...+++|+.++.+++++|++.+ +++|||+||..+||.....+ .+|+.+..|.++|+.
T Consensus 82 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~ 161 (668)
T PLN02260 82 DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSA 161 (668)
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHH
Confidence 99999999865544445566788999999999999999987 88999999999998765432 356777778899999
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceee
Q 040584 156 SKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVR 234 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 234 (347)
+|.++|.+++.+.+++ +++++++||++||||+. . ...+.+ ++..+..++ .+.++| ++.+.+
T Consensus 162 sK~~aE~~v~~~~~~~-~l~~vilR~~~VyGp~~-----~----~~~~i~~~~~~a~~g~--~i~i~g------~g~~~r 223 (668)
T PLN02260 162 TKAGAEMLVMAYGRSY-GLPVITTRGNNVYGPNQ-----F----PEKLIPKFILLAMQGK--PLPIHG------DGSNVR 223 (668)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEECcccccCcCC-----C----cccHHHHHHHHHhCCC--CeEEec------CCCceE
Confidence 9999999999988775 89999999999999842 1 122444 455555554 455666 788999
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC--cccCCCCCCCchhhccChHHHHH
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP--LVKSGRRPGDAEIVYASTEKAER 312 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~~~~~~~~~~~~d~~k~~~ 312 (347)
+|+|++|+|+++..+++. ...+++||+++++.+|+.|+++.+++.+|.+.. +...+.++.......+|++|++
T Consensus 224 ~~ihV~Dva~a~~~~l~~----~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~- 298 (668)
T PLN02260 224 SYLYCEDVAEAFEVVLHK----GEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK- 298 (668)
T ss_pred eeEEHHHHHHHHHHHHhc----CCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-
Confidence 999999999999988875 234689999999999999999999999997643 2223334444456678999996
Q ss_pred hcCCcccccHHHHHHHHHHHHhhCCCCCC
Q 040584 313 ELNWKAKYGIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 313 ~lg~~p~~~~~~~i~~~~~~~~~~~~~~~ 341 (347)
.|||+|+++++|+++++++||++++..+.
T Consensus 299 ~lGw~p~~~~~egl~~~i~w~~~~~~~~~ 327 (668)
T PLN02260 299 KLGWQERTSWEEGLKKTMEWYTSNPDWWG 327 (668)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHhChhhhh
Confidence 68999999999999999999999876554
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=320.36 Aligned_cols=292 Identities=25% Similarity=0.387 Sum_probs=228.7
Q ss_pred EEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEEc
Q 040584 6 LVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHF 85 (347)
Q Consensus 6 lItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 85 (347)
||||||||||++|++.|++.|++|+++.+. ..+|+.|.+++.++++..++|+|||+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~------------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~ 56 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH------------------------KELDLTRQADVEAFFAKEKPTYVILA 56 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc------------------------ccCCCCCHHHHHHHHhccCCCEEEEe
Confidence 699999999999999999999998765421 13799999999999987779999999
Q ss_pred cccccCC-ccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC----CCCCCC-chhhhHHH
Q 040584 86 AGLKAVG-ESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF----PLQAMN-PYGRSKLF 159 (347)
Q Consensus 86 a~~~~~~-~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~----~~~~~~-~Y~~sK~~ 159 (347)
|+..... .....+...++.|+.++.+++++|++.+++++|++||+.+||.....+.+|++ +..|.+ .|+.+|.+
T Consensus 57 A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~ 136 (306)
T PLN02725 57 AAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIA 136 (306)
T ss_pred eeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHH
Confidence 9975421 23345677899999999999999999999999999999999977677888875 444544 59999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHH----HHHcCCCCceEEecccCCCCCCceee
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVT----QVAVGRRPALTVFGTDYSTKDGTVVR 234 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~ 234 (347)
+|++++.+.+.. +++++++||+++|||+....+. ...+.+ ++. ....+.. ....+| ++++.+
T Consensus 137 ~e~~~~~~~~~~-~~~~~~~R~~~vyG~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~-~~~~~~------~g~~~~ 203 (306)
T PLN02725 137 GIKMCQAYRIQY-GWDAISGMPTNLYGPHDNFHPE-----NSHVIPALIRRFHEAKANGAP-EVVVWG------SGSPLR 203 (306)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecceeCCCCCCCCC-----CCcccHHHHHHHHHHhhcCCC-eEEEcC------CCCeee
Confidence 999999887775 8999999999999995321111 111222 332 2233332 222245 688999
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhc
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 314 (347)
+|+|++|+++++..+++.. ...+.||+++++.+|+.|+++.+++.+|.+..+...+.++.......+|++|++ .|
T Consensus 204 ~~i~v~Dv~~~~~~~~~~~----~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~l 278 (306)
T PLN02725 204 EFLHVDDLADAVVFLMRRY----SGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLR-SL 278 (306)
T ss_pred ccccHHHHHHHHHHHHhcc----ccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHH-Hh
Confidence 9999999999999998862 233678999999999999999999999976655443333433445678999996 58
Q ss_pred CCcccccHHHHHHHHHHHHhhCCCC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKNPYG 339 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~~~~ 339 (347)
||+|+++++++++++++|++++..+
T Consensus 279 g~~p~~~~~~~l~~~~~~~~~~~~~ 303 (306)
T PLN02725 279 GWDPKFSLKDGLQETYKWYLENYET 303 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999988543
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=317.56 Aligned_cols=311 Identities=31% Similarity=0.477 Sum_probs=244.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|||||||||++++++|++.| ++|++++|...... .+.+..+.. .+++.++.+|++|.+++.++++..++|+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 76 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN--LENLADLED--NPRYRFVKGDIGDRELVSRLFTEHQPDA 76 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh--hhhhhhhcc--CCCcEEEEcCCcCHHHHHHHHhhcCCCE
Confidence 58999999999999999999987 78988876432111 111111111 2367889999999999999998656999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccccccCCCCC-CCCCCCCCCCCCCchhhhHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKV-VPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~~yg~~~~-~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|||+|+........+.+..++++|+.++.+++++|++.+.+ ++|++||..+||.... .+++|+.+..|.+.|+.+|..
T Consensus 77 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~ 156 (317)
T TIGR01181 77 VVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAA 156 (317)
T ss_pred EEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHH
Confidence 99999976544445567788999999999999999987543 8999999999987543 368888888888999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
+|.+++.++++. +++++++||+.+|||.. .. ..+.+ ++.++..+. .+++++ ++++.++|+|
T Consensus 157 ~e~~~~~~~~~~-~~~~~i~R~~~i~G~~~-----~~----~~~~~~~~~~~~~~~--~~~~~~------~g~~~~~~i~ 218 (317)
T TIGR01181 157 SDHLVRAYHRTY-GLPALITRCSNNYGPYQ-----FP----EKLIPLMITNALAGK--PLPVYG------DGQQVRDWLY 218 (317)
T ss_pred HHHHHHHHHHHh-CCCeEEEEeccccCCCC-----Cc----ccHHHHHHHHHhcCC--CceEeC------CCceEEeeEE
Confidence 999999988775 89999999999999831 11 12343 556666555 344555 6888999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc-ccCCCCCCCchhhccChHHHHHhcCCc
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL-VKSGRRPGDAEIVYASTEKAERELNWK 317 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~lg~~ 317 (347)
++|+++++..++++ ...+++||+++++++|++|+++.+.+.+|.+... ...+..+.....+.+|++|+++.|||+
T Consensus 219 v~D~a~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~ 294 (317)
T TIGR01181 219 VEDHCRAIYLVLEK----GRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWA 294 (317)
T ss_pred HHHHHHHHHHHHcC----CCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCC
Confidence 99999999999875 2345899999999999999999999999975432 222223333344568999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCCCC
Q 040584 318 AKYGIDEMCRDQWNWASKNPYGY 340 (347)
Q Consensus 318 p~~~~~~~i~~~~~~~~~~~~~~ 340 (347)
|+++++++++++++||+++.+.|
T Consensus 295 p~~~~~~~i~~~~~~~~~~~~~~ 317 (317)
T TIGR01181 295 PKYTFEEGLRKTVQWYLDNEWWW 317 (317)
T ss_pred CCCcHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999987654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=319.03 Aligned_cols=302 Identities=21% Similarity=0.244 Sum_probs=228.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|+||||+||||++|+++|+++||+|+++.|+.+..... .+..+.. ...++.++.+|++|.+++.++++ ++|+
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~--~~d~ 84 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT--HLRELEG-GKERLILCKADLQDYEALKAAID--GCDG 84 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHH--HHHHhhC-CCCcEEEEecCcCChHHHHHHHh--cCCE
Confidence 58999999999999999999999999999998875532211 1111111 12357889999999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc-cccCCCCC---CCCCCCC------CCCCCC
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA-TAYGWPKV---VPCTEEF------PLQAMN 151 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~-~~yg~~~~---~~~~e~~------~~~~~~ 151 (347)
|||+|+... .++...+++|+.++.+++++|++.+++|||++||. .+||.... .+++|+. +..+.+
T Consensus 85 Vih~A~~~~-----~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~ 159 (342)
T PLN02214 85 VFHTASPVT-----DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKN 159 (342)
T ss_pred EEEecCCCC-----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhcccccc
Confidence 999998642 34677899999999999999999999999999996 58875332 3467774 334678
Q ss_pred chhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCc
Q 040584 152 PYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
+|+.||.++|++++.++++. +++++++||++||||+.. .. ....+ ..+.+...++... .++
T Consensus 160 ~Y~~sK~~aE~~~~~~~~~~-g~~~v~lRp~~vyGp~~~-----~~-~~~~~-~~~~~~~~g~~~~-----------~~~ 220 (342)
T PLN02214 160 WYCYGKMVAEQAAWETAKEK-GVDLVVLNPVLVLGPPLQ-----PT-INASL-YHVLKYLTGSAKT-----------YAN 220 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCcEEEEeCCceECCCCC-----CC-CCchH-HHHHHHHcCCccc-----------CCC
Confidence 89999999999999998775 899999999999999422 11 11112 2223344444221 134
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC-CCCcccCCCCCCCchhhccChHHH
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVKSGRRPGDAEIVYASTEKA 310 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~ 310 (347)
+.++||||+|+|++++.++++ + ..++.||+++ +..+++|+++.+.+.++. +.+....+..+.......+|++|+
T Consensus 221 ~~~~~i~V~Dva~a~~~al~~---~-~~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 295 (342)
T PLN02214 221 LTQAYVDVRDVALAHVLVYEA---P-SASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKI 295 (342)
T ss_pred CCcCeeEHHHHHHHHHHHHhC---c-ccCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHH
Confidence 578999999999999999986 2 2346899976 578999999999999863 233222222233344556899999
Q ss_pred HHhcCCcccccHHHHHHHHHHHHhhCCCC
Q 040584 311 ERELNWKAKYGIDEMCRDQWNWASKNPYG 339 (347)
Q Consensus 311 ~~~lg~~p~~~~~~~i~~~~~~~~~~~~~ 339 (347)
+ .|||+|+ +++|+|+++++||++..+-
T Consensus 296 ~-~LG~~p~-~lee~i~~~~~~~~~~~~~ 322 (342)
T PLN02214 296 K-DLGLEFT-STKQSLYDTVKSLQEKGHL 322 (342)
T ss_pred H-HcCCccc-CHHHHHHHHHHHHHHcCCC
Confidence 7 5999996 9999999999999987554
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=293.09 Aligned_cols=302 Identities=23% Similarity=0.376 Sum_probs=251.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.++|+||||.||||+|||..|..+||+|++++............+. ..+.++.+.-|+. .+++. .+|-
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~-----~~~~fel~~hdv~-----~pl~~--evD~ 94 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWI-----GHPNFELIRHDVV-----EPLLK--EVDQ 94 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhc-----cCcceeEEEeech-----hHHHH--Hhhh
Confidence 3689999999999999999999999999999877665544333221 1345556666654 44666 5999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC-----CCCCCCchhhh
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRS 156 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~-----~~~~~~~Y~~s 156 (347)
|+|+|++.++.....+|...+..|+.++.+.+-.|++.+ +||+++||+.|||.+...|..|+. |..|...|...
T Consensus 95 IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydeg 173 (350)
T KOG1429|consen 95 IYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEG 173 (350)
T ss_pred hhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhhHH
Confidence 999999888777888999999999999999999999987 699999999999998877777764 45678899999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
|..+|.++.+|.++. |+.+.+.|++|.|||.-. ... .+.+..++.+.+.+. ++.++| +|.|.|.|
T Consensus 174 Kr~aE~L~~~y~k~~-giE~rIaRifNtyGPrm~----~~d--grvvsnf~~q~lr~e--pltv~g------~G~qtRSF 238 (350)
T KOG1429|consen 174 KRVAETLCYAYHKQE-GIEVRIARIFNTYGPRMH----MDD--GRVVSNFIAQALRGE--PLTVYG------DGKQTRSF 238 (350)
T ss_pred HHHHHHHHHHhhccc-CcEEEEEeeecccCCccc----cCC--ChhhHHHHHHHhcCC--CeEEEc------CCcceEEE
Confidence 999999999999885 999999999999999522 111 122344666666544 688898 89999999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNW 316 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~ 316 (347)
.+|+|+++.++.++++.. .+-||+++++..|+.|+++++.+..+....+.+....+..+.....|++++++.|||
T Consensus 239 ~yvsD~Vegll~Lm~s~~-----~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW 313 (350)
T KOG1429|consen 239 QYVSDLVEGLLRLMESDY-----RGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGW 313 (350)
T ss_pred EeHHHHHHHHHHHhcCCC-----cCCcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCC
Confidence 999999999999998722 256999999999999999999999987777777777788888899999999999999
Q ss_pred cccccHHHHHHHHHHHHhhC
Q 040584 317 KAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~~~~~ 336 (347)
.|+.+++|+|+.++.|+++.
T Consensus 314 ~Pkv~L~egL~~t~~~fr~~ 333 (350)
T KOG1429|consen 314 EPKVSLREGLPLTVTYFRER 333 (350)
T ss_pred CCCCcHHHhhHHHHHHHHHH
Confidence 99999999999999999764
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=315.24 Aligned_cols=282 Identities=17% Similarity=0.121 Sum_probs=221.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+||||||+||||++|+++|+++| +|++++|... .+.+|++|.+.+.+++++.++|+|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~---------------------~~~~Dl~d~~~~~~~~~~~~~D~V 58 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST---------------------DYCGDFSNPEGVAETVRKIRPDVI 58 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc---------------------cccCCCCCHHHHHHHHHhcCCCEE
Confidence 589999999999999999999999 7888876421 245899999999999986679999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||||+......+..++...+++|+.++.+++++|++.++ ++||+||..|||.....|++|+++..|.++|+.+|.++|+
T Consensus 59 ih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~~E~ 137 (299)
T PRK09987 59 VNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLAGEK 137 (299)
T ss_pred EECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHHHHH
Confidence 999998766556667778889999999999999999986 8999999999988777789999999999999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
+++.+.. +.+++|++++|||.. ..+.+ ++..+..++ .+.++|.. -+++.+.+.+++|
T Consensus 138 ~~~~~~~-----~~~ilR~~~vyGp~~-----------~~~~~~~~~~~~~~~--~~~v~~d~----~g~~~~~~~~~d~ 195 (299)
T PRK09987 138 ALQEHCA-----KHLIFRTSWVYAGKG-----------NNFAKTMLRLAKERE--ELSVINDQ----FGAPTGAELLADC 195 (299)
T ss_pred HHHHhCC-----CEEEEecceecCCCC-----------CCHHHHHHHHHhcCC--CeEEeCCC----cCCCCCHHHHHHH
Confidence 9987643 469999999999831 12334 455544443 45666521 0455555666777
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHh---CCCCC---cccC-----CCCCCCchhhccChHHH
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKAS---GKKIP---LVKS-----GRRPGDAEIVYASTEKA 310 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~---g~~~~---~~~~-----~~~~~~~~~~~~d~~k~ 310 (347)
+++++..++.. . ..+++||+++++.+|+.|+++.+.+.+ |.+.+ +... +....++....+|++|+
T Consensus 196 ~~~~~~~~~~~---~-~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~ 271 (299)
T PRK09987 196 TAHAIRVALNK---P-EVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKF 271 (299)
T ss_pred HHHHHHHhhcc---C-CCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHH
Confidence 88888777654 1 223799999999999999999998764 43321 1121 22334566778999999
Q ss_pred HHhcCCcccccHHHHHHHHHHHHh
Q 040584 311 ERELNWKAKYGIDEMCRDQWNWAS 334 (347)
Q Consensus 311 ~~~lg~~p~~~~~~~i~~~~~~~~ 334 (347)
++.|||+|. +|+++|+++++-+.
T Consensus 272 ~~~lg~~~~-~~~~~l~~~~~~~~ 294 (299)
T PRK09987 272 QQNFALVLP-DWQVGVKRMLTELF 294 (299)
T ss_pred HHHhCCCCc-cHHHHHHHHHHHHh
Confidence 999999987 99999999997653
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=313.05 Aligned_cols=304 Identities=20% Similarity=0.237 Sum_probs=227.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++||+|+++.|+......... +....+ ...++.++.+|++|.+++.++++ ++|+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~--~~d~ 80 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDH-LLALDG-AKERLKLFKADLLDEGSFELAID--GCET 80 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHH-HHhccC-CCCceEEEeCCCCCchHHHHHHc--CCCE
Confidence 4899999999999999999999999999988877654332211 111101 12467889999999999999998 5999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCCC-----CCCCCCCCCCCCC------
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGWP-----KVVPCTEEFPLQA------ 149 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~~-----~~~~~~e~~~~~~------ 149 (347)
|||+||........+.+...+++|+.++.+++++|.+. +.++||++||..+|+.. ...+++|+.+..|
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 160 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEER 160 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccc
Confidence 99999965433333455678899999999999999885 57799999999887543 2345788877654
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.++|+.||..+|.+++.+.+++ +++++++||+++|||... +. ......++.++..++.+ +
T Consensus 161 ~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilR~~~vyGp~~~-----~~--~~~~~~~i~~~~~~~~~-~----------- 220 (325)
T PLN02989 161 KQWYVLSKTLAEDAAWRFAKDN-EIDLIVLNPGLVTGPILQ-----PT--LNFSVAVIVELMKGKNP-F----------- 220 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHc-CCeEEEEcCCceeCCCCC-----CC--CCchHHHHHHHHcCCCC-C-----------
Confidence 3689999999999999988775 899999999999999532 11 11223455555555432 1
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCC--CCCCCchhhccCh
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG--RRPGDAEIVYAST 307 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~d~ 307 (347)
+.+.++|+|++|+|++++.++++ +. .+++||++ ++.+|++|+++.+.+.++.. .+...+ ..+........|+
T Consensus 221 ~~~~r~~i~v~Dva~a~~~~l~~---~~-~~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 294 (325)
T PLN02989 221 NTTHHRFVDVRDVALAHVKALET---PS-ANGRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCL 294 (325)
T ss_pred CCcCcCeeEHHHHHHHHHHHhcC---cc-cCceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCH
Confidence 13457899999999999999886 22 24689995 56899999999999999732 111111 0111123557899
Q ss_pred HHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 308 EKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 308 ~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
+|+++ |||+|.++++++|+++++|+++.
T Consensus 295 ~k~~~-lg~~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 295 DKVKS-LGIIEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 99976 99999999999999999999764
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=310.81 Aligned_cols=294 Identities=22% Similarity=0.291 Sum_probs=215.1
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HH-HHHHHcc---C
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AA-LEVVFAG---T 77 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~-~~~~~~~---~ 77 (347)
||||||+||||++|+++|+++|++++++.|+...... .. ....+|+.|. +. +.++++. .
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~-------------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FV-------------NLVDLDIADYMDKEDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-HH-------------hhhhhhhhhhhhHHHHHHHHhcccccC
Confidence 8999999999999999999999987766554432211 00 0122344443 33 2333321 1
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhH
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK 157 (347)
++|+|||+||..... ..++...++.|+.++.+++++|++.++ +||++||..+||.....+.+|+.+..|.++|+.+|
T Consensus 68 ~~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK 144 (308)
T PRK11150 68 DIEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSK 144 (308)
T ss_pred CccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHH
Confidence 599999999864432 224456789999999999999999887 79999999999976555678888888999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
.++|++++.+.+.. +++++++||+++|||+.. ..+....+. .+..++..++.+.+. .| +++..++|
T Consensus 145 ~~~E~~~~~~~~~~-~~~~~~lR~~~vyG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~-~g------~~~~~r~~ 211 (308)
T PRK11150 145 FLFDEYVRQILPEA-NSQICGFRYFNVYGPREG-----HKGSMASVAFHLNNQLNNGENPKLF-EG------SENFKRDF 211 (308)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeeeeecCCCCC-----CCCccchhHHHHHHHHhcCCCCEEe-cC------CCceeeee
Confidence 99999999987764 899999999999998532 111111222 234556666533221 23 56789999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC----CCchhhccChHHHHH
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP----GDAEIVYASTEKAER 312 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~ 312 (347)
+|++|++++++.+++. . .+++||+++++.+|+.|+++.+.+.+|.. ++...+... .......+|++|+++
T Consensus 212 i~v~D~a~a~~~~~~~----~-~~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 285 (308)
T PRK11150 212 VYVGDVAAVNLWFWEN----G-VSGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA 285 (308)
T ss_pred eeHHHHHHHHHHHHhc----C-CCCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh
Confidence 9999999999988876 1 24799999999999999999999999853 222211111 112334689999986
Q ss_pred hcCCcccc-cHHHHHHHHHHHHhh
Q 040584 313 ELNWKAKY-GIDEMCRDQWNWASK 335 (347)
Q Consensus 313 ~lg~~p~~-~~~~~i~~~~~~~~~ 335 (347)
+||+|+. +++++|+++++|+.+
T Consensus 286 -~g~~p~~~~~~~gl~~~~~~~~~ 308 (308)
T PRK11150 286 -AGYDKPFKTVAEGVAEYMAWLNR 308 (308)
T ss_pred -cCCCCCCCCHHHHHHHHHHHhhC
Confidence 7999975 999999999999853
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=310.40 Aligned_cols=312 Identities=19% Similarity=0.255 Sum_probs=221.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.|+||||||+||||++++++|+++|++|+++.|+..........+. . ..+++++.+|+.|.+.+.++++ ++|+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 82 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK---E--GDRLRLFRADLQEEGSFDEAVK--GCDG 82 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc---c--CCeEEEEECCCCCHHHHHHHHc--CCCE
Confidence 4899999999999999999999999999998887544332222211 1 2468889999999999999998 5999
Q ss_pred EEEccccccCCc--cccCcch-----hhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCC-----CCCCCCCCC--
Q 040584 82 VIHFAGLKAVGE--SVQKPLP-----YFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPK-----VVPCTEEFP-- 146 (347)
Q Consensus 82 vih~a~~~~~~~--~~~~~~~-----~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~-----~~~~~e~~~-- 146 (347)
|||+|+...... ...++.. .++.|+.++.+++++|++.+ +++||++||..+||... ..+++|+.+
T Consensus 83 Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p 162 (353)
T PLN02896 83 VFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTP 162 (353)
T ss_pred EEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCc
Confidence 999999754332 2233433 34455799999999998875 78999999999998532 134566522
Q ss_pred C-------CCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 147 L-------QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 147 ~-------~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
. .+.++|+.||.++|.+++.+++.+ +++++++||++||||+.. .. . ..+...+.....|....+.
T Consensus 163 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~~~~~~lR~~~vyGp~~~-----~~-~-~~~~~~~~~~~~g~~~~~~ 234 (353)
T PLN02896 163 IDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN-GIDLVSVITTTVAGPFLT-----PS-V-PSSIQVLLSPITGDSKLFS 234 (353)
T ss_pred HHHhhccCCCCccHHHHHHHHHHHHHHHHHHc-CCeEEEEcCCcccCCCcC-----CC-C-CchHHHHHHHhcCCccccc
Confidence 1 244589999999999999998876 899999999999999532 11 1 1222222222234322222
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCC-CCcccCCCCCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK-IPLVKSGRRPG 298 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~ 298 (347)
..+.. ......++|||++|++++++.+++. + ..+++|++ +++.+++.|+++.+++.++.. ..+...+....
T Consensus 235 ~~~~~---~~~~~~~dfi~v~Dva~a~~~~l~~---~-~~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~ 306 (353)
T PLN02896 235 ILSAV---NSRMGSIALVHIEDICDAHIFLMEQ---T-KAEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDEEKRG 306 (353)
T ss_pred ccccc---ccccCceeEEeHHHHHHHHHHHHhC---C-CcCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccccccC
Confidence 11100 0011246999999999999999976 2 22357865 577899999999999998733 22222222112
Q ss_pred CchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 299 DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 299 ~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
.. ...+|++|++ .|||+|+++++++|+++++|++++..
T Consensus 307 ~~-~~~~~~~~~~-~lGw~p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 307 SI-PSEISSKKLR-DLGFEYKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred cc-ccccCHHHHH-HcCCCccCCHHHHHHHHHHHHHHCCC
Confidence 11 2356888986 59999999999999999999999977
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=307.71 Aligned_cols=303 Identities=21% Similarity=0.225 Sum_probs=225.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|||||||||||++|+++|+++||+|+++.|+....... ..+..+.. ..++++++.+|+.|.+.+.++++ ++|+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 79 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLALDG-AKERLHLFKANLLEEGSFDSVVD--GCEG 79 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhccC-CCCceEEEeccccCcchHHHHHc--CCCE
Confidence 47899999999999999999999999999998875543211 11111111 12478899999999999999998 6999
Q ss_pred EEEccccccCCccccCcc-hhhhhhhhHHHHHHHHHHHc-CCCeEEEecccc--ccCCC---CCCCCCCCCCCCC-----
Q 040584 82 VIHFAGLKAVGESVQKPL-PYFDNNLTGTITLLEVMAAH-GCKNLVFSSSAT--AYGWP---KVVPCTEEFPLQA----- 149 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~-~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~--~yg~~---~~~~~~e~~~~~~----- 149 (347)
|||+|+.... ...++. .++++|+.++.+++++|++. +++|||++||.. +|+.. ...+++|+.+..|
T Consensus 80 Vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~ 157 (322)
T PLN02662 80 VFHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEE 157 (322)
T ss_pred EEEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhc
Confidence 9999997532 223343 68899999999999999987 789999999976 46532 2345777765544
Q ss_pred -CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 150 -MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 150 -~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
.+.|+.+|..+|++++.+.++. +++++++||+++|||... +. .......+.++..+.. .
T Consensus 158 ~~~~Y~~sK~~~E~~~~~~~~~~-~~~~~~lRp~~v~Gp~~~-----~~--~~~~~~~~~~~~~~~~-~----------- 217 (322)
T PLN02662 158 SKLWYVLSKTLAEEAAWKFAKEN-GIDMVTINPAMVIGPLLQ-----PT--LNTSAEAILNLINGAQ-T----------- 217 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHHc-CCcEEEEeCCcccCCCCC-----CC--CCchHHHHHHHhcCCc-c-----------
Confidence 3689999999999999988775 899999999999998421 11 1112334455554432 1
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCC-CcccCCCCCCCchhhccCh
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI-PLVKSGRRPGDAEIVYAST 307 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~d~ 307 (347)
.+++.++|||++|+|++++.++++ +.. ++.||++ ++.+|++|+++.+.+.++... +....+ .........+|+
T Consensus 218 ~~~~~~~~i~v~Dva~a~~~~~~~---~~~-~~~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~ 291 (322)
T PLN02662 218 FPNASYRWVDVRDVANAHIQAFEI---PSA-SGRYCLV-ERVVHYSEVVKILHELYPTLQLPEKCAD-DKPYVPTYQVSK 291 (322)
T ss_pred CCCCCcCeEEHHHHHHHHHHHhcC---cCc-CCcEEEe-CCCCCHHHHHHHHHHHCCCCCCCCCCCC-ccccccccccCh
Confidence 134678999999999999999986 222 3578886 578999999999999887421 111111 112345567999
Q ss_pred HHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 308 EKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 308 ~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+|+++ |||++. +++++|+++++||+++.+
T Consensus 292 ~k~~~-lg~~~~-~~~~~l~~~~~~~~~~~~ 320 (322)
T PLN02662 292 EKAKS-LGIEFI-PLEVSLKDTVESLKEKGF 320 (322)
T ss_pred HHHHH-hCCccc-cHHHHHHHHHHHHHHcCC
Confidence 99985 999985 999999999999998865
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=308.75 Aligned_cols=311 Identities=20% Similarity=0.215 Sum_probs=223.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|+++.|......... .+..+.. .+++.++.+|++|.+++.++++ ++|+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~--~~d~ 83 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIA-HLRALQE--LGDLKIFGADLTDEESFEAPIA--GCDL 83 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHhcCC--CCceEEEEcCCCChHHHHHHHh--cCCE
Confidence 589999999999999999999999999998887764332111 1111111 1357889999999999999998 5999
Q ss_pred EEEccccccCCccccCc-chhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCCCC----CCCCCCCC---------C
Q 040584 82 VIHFAGLKAVGESVQKP-LPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGWPK----VVPCTEEF---------P 146 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~~~----~~~~~e~~---------~ 146 (347)
|||+|+.... ...++ ..++++|+.++.++++++++. ++++||++||..+||... ..+.+|+. +
T Consensus 84 vih~A~~~~~--~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (338)
T PLN00198 84 VFHVATPVNF--ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSE 161 (338)
T ss_pred EEEeCCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhc
Confidence 9999996421 12233 346789999999999999886 588999999999998532 23445542 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
..|.++|+.||.++|.+++.+++++ +++++++||++||||+..+ ....+..++.++..++. +.+.|...
T Consensus 162 ~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~~~R~~~vyGp~~~~-------~~~~~~~~~~~~~~~~~--~~~~g~~~- 230 (338)
T PLN00198 162 KPPTWGYPASKTLAEKAAWKFAEEN-NIDLITVIPTLMAGPSLTS-------DIPSSLSLAMSLITGNE--FLINGLKG- 230 (338)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhc-CceEEEEeCCceECCCccC-------CCCCcHHHHHHHHcCCc--cccccccc-
Confidence 3467889999999999999998875 8999999999999995321 01122333444455442 22222000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC-CCCcccCCCCCCCchhhcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVKSGRRPGDAEIVYA 305 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~ 305 (347)
....+..++|+||+|++++++.+++.. ..++.|+ ++++.+|++|+++.+.+.++. +.+...... + ......+
T Consensus 231 ~~~~~~~~~~i~V~D~a~a~~~~~~~~----~~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~ 303 (338)
T PLN00198 231 MQMLSGSISITHVEDVCRAHIFLAEKE----SASGRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDF-P-SKAKLII 303 (338)
T ss_pred cccccCCcceeEHHHHHHHHHHHhhCc----CcCCcEE-EecCCCCHHHHHHHHHHHCCCCCCCcccccc-C-CCCcccc
Confidence 000122479999999999999998862 1235685 456779999999999998863 233222111 1 1234568
Q ss_pred ChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 306 STEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 306 d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
|++|+++ +||+|+++++++|+++++||+++.+
T Consensus 304 ~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~~~ 335 (338)
T PLN00198 304 SSEKLIS-EGFSFEYGIEEIYDQTVEYFKAKGL 335 (338)
T ss_pred ChHHHHh-CCceecCcHHHHHHHHHHHHHHcCC
Confidence 9999987 5999999999999999999998754
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=308.30 Aligned_cols=307 Identities=19% Similarity=0.246 Sum_probs=221.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|+++.|+........... ...+ ...+++++.+|++|.+.+.++++ ++|+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~-~~~~~~~v~~Dl~d~~~~~~~~~--~~d~ 80 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLL-DLPG-ATTRLTLWKADLAVEGSFDDAIR--GCTG 80 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHH-hccC-CCCceEEEEecCCChhhHHHHHh--CCCE
Confidence 489999999999999999999999999999988755433222111 1100 12357889999999999999998 5999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCC-CCC-CCCCCC---------CCC
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPK-VVP-CTEEFP---------LQA 149 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~-~~~-~~e~~~---------~~~ 149 (347)
|||+|+..... ..+.....+++|+.++.+++++|++.+ ++|||++||..+|+... ..+ ++|+.+ ..+
T Consensus 81 ViH~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (351)
T PLN02650 81 VFHVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT 159 (351)
T ss_pred EEEeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence 99999865321 112224688999999999999999876 78999999998776432 223 455532 124
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.++|+.||.++|.+++.+++++ +++++++||+++|||... . .....+...+. ...+..... +
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~Gp~~~-----~-~~~~~~~~~~~-~~~~~~~~~---~------- 221 (351)
T PLN02650 160 GWMYFVSKTLAEKAAWKYAAEN-GLDFISIIPTLVVGPFIS-----T-SMPPSLITALS-LITGNEAHY---S------- 221 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHc-CCeEEEECCCceECCCCC-----C-CCCccHHHHHH-HhcCCcccc---C-------
Confidence 4689999999999999998875 999999999999999532 1 11122222221 122322111 1
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCC-CCcccCCCCCCCchhhccChH
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK-IPLVKSGRRPGDAEIVYASTE 308 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~ 308 (347)
....++|+|++|++++++.++++ +. .++.|+ ++++.+|+.|+++.+.+.++.. .+... +..+.......+|++
T Consensus 222 ~~~~r~~v~V~Dva~a~~~~l~~---~~-~~~~~i-~~~~~~s~~el~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~d~~ 295 (351)
T PLN02650 222 IIKQGQFVHLDDLCNAHIFLFEH---PA-AEGRYI-CSSHDATIHDLAKMLREKYPEYNIPARF-PGIDEDLKSVEFSSK 295 (351)
T ss_pred cCCCcceeeHHHHHHHHHHHhcC---cC-cCceEE-ecCCCcCHHHHHHHHHHhCcccCCCCCC-CCcCcccccccCChH
Confidence 12347999999999999999986 22 235784 5677899999999999988732 22111 112233445567899
Q ss_pred HHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 309 KAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 309 k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
|+ +.|||+|+++++++|+++++|+++...
T Consensus 296 k~-~~lG~~p~~~l~egl~~~i~~~~~~~~ 324 (351)
T PLN02650 296 KL-TDLGFTFKYSLEDMFDGAIETCREKGL 324 (351)
T ss_pred HH-HHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 97 468999999999999999999988754
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=301.81 Aligned_cols=304 Identities=25% Similarity=0.322 Sum_probs=226.9
Q ss_pred EEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc--CCCcE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG--TKFDA 81 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~~~d~ 81 (347)
|||||||||||+++++.|+++|+ +|++++|...... +..+ ....+..|+.+.+.+..+.+. .++|+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~-----~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~D~ 69 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHK-----FLNL------ADLVIADYIDKEDFLDRLEKGAFGKIEA 69 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchh-----hhhh------hheeeeccCcchhHHHHHHhhccCCCCE
Confidence 69999999999999999999997 7888877654321 1111 113466788888777776641 26999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCC-CCCCCchhhhHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP-LQAMNPYGRSKLFI 160 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~-~~~~~~Y~~sK~~~ 160 (347)
|||+|+.... ...++...+++|+.++.+++++|++.++ +||++||..+||.... +.+|+++ ..|.+.|+.+|..+
T Consensus 70 vvh~A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~-~~~e~~~~~~p~~~Y~~sK~~~ 145 (314)
T TIGR02197 70 IFHQGACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEA-GFREGRELERPLNVYGYSKFLF 145 (314)
T ss_pred EEECccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCC-CcccccCcCCCCCHHHHHHHHH
Confidence 9999997532 3446677889999999999999999887 8999999999987543 4555544 45888999999999
Q ss_pred HHHHHHHhh-hcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHR-SDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~-~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++++.. ...+++++++|++++|||..... ......+..++..+..+.. +.+++.....++|++.++|+|+
T Consensus 146 e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~i~v 219 (314)
T TIGR02197 146 DQYVRRRVLPEALSAQVVGLRYFNVYGPREYHK----GKMASVAFHLFNQIKAGGN--VKLFKSSEGFKDGEQLRDFVYV 219 (314)
T ss_pred HHHHHHHhHhhccCCceEEEEEeeccCCCCCCC----CCcccHHHHHHHHHhcCCC--eEEecCccccCCCCceeeeEEH
Confidence 999987643 22367999999999999842211 1111223345666666553 3333322112368899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC----CCchhhccChHHHHHhcC
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP----GDAEIVYASTEKAERELN 315 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~lg 315 (347)
+|+++++..++.. ..+++||+++++++|++|+++.+++.+|.+..+...+... .......+|++|+++.+|
T Consensus 220 ~D~a~~i~~~~~~-----~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 294 (314)
T TIGR02197 220 KDVVDVNLWLLEN-----GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGY 294 (314)
T ss_pred HHHHHHHHHHHhc-----ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcC
Confidence 9999999999876 2347999999999999999999999999765433322211 122345689999999999
Q ss_pred CcccccHHHHHHHHHHHHh
Q 040584 316 WKAKYGIDEMCRDQWNWAS 334 (347)
Q Consensus 316 ~~p~~~~~~~i~~~~~~~~ 334 (347)
|.|+++++++++++++|+.
T Consensus 295 ~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 295 YGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred CCCcccHHHHHHHHHHHHh
Confidence 9999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=301.90 Aligned_cols=301 Identities=23% Similarity=0.285 Sum_probs=222.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++||||||+||||++++++|+++||+|+++.|+......... +....+ ...+++++.+|++|.+.+.++++ ++|+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 80 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEH-LLALDG-AKERLKLFKADLLEESSFEQAIE--GCDA 80 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHH-HHhccC-CCCceEEEecCCCCcchHHHHHh--CCCE
Confidence 5899999999999999999999999999988887654332211 111111 12468899999999999999998 6999
Q ss_pred EEEccccccCCccccCc-chhhhhhhhHHHHHHHHHHHc-CCCeEEEecccccc--CCC---CCCCCCCCCCCC------
Q 040584 82 VIHFAGLKAVGESVQKP-LPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAY--GWP---KVVPCTEEFPLQ------ 148 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~y--g~~---~~~~~~e~~~~~------ 148 (347)
|||+|+.... ...++ ...+++|+.++.+++++|++. +++|||++||..+| +.. ...+++|+.+..
T Consensus 81 vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~ 158 (322)
T PLN02986 81 VFHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRE 158 (322)
T ss_pred EEEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhc
Confidence 9999997432 12223 357889999999999999985 68899999998764 332 234567776533
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
+.+.|+.||..+|..++.+.+++ +++++++||+++|||... +. ......++.....++. + +
T Consensus 159 ~~~~Y~~sK~~aE~~~~~~~~~~-~~~~~~lrp~~v~Gp~~~-----~~--~~~~~~~~~~~~~g~~--~--~------- 219 (322)
T PLN02986 159 TKNWYPLSKILAENAAWEFAKDN-GIDMVVLNPGFICGPLLQ-----PT--LNFSVELIVDFINGKN--L--F------- 219 (322)
T ss_pred cccchHHHHHHHHHHHHHHHHHh-CCeEEEEcccceeCCCCC-----CC--CCccHHHHHHHHcCCC--C--C-------
Confidence 35789999999999999998875 899999999999998422 11 1112345555555542 1 1
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhh--ccC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIV--YAS 306 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~--~~d 306 (347)
+.+.++|||++|+|++++.++++ +.. ++.||++ ++.+|++|+++.+.+.++. ..+... ......... .+|
T Consensus 220 -~~~~~~~v~v~Dva~a~~~al~~---~~~-~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~d 291 (322)
T PLN02986 220 -NNRFYRFVDVRDVALAHIKALET---PSA-NGRYIID-GPIMSVNDIIDILRELFPD-LCIADT-NEESEMNEMICKVC 291 (322)
T ss_pred -CCcCcceeEHHHHHHHHHHHhcC---ccc-CCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC-CccccccccCCccC
Confidence 24568999999999999999987 222 3589994 5689999999999999873 221111 111112222 379
Q ss_pred hHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 307 TEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
++|+++ |||+|+ +++|+|+++++|+++..
T Consensus 292 ~~~~~~-lg~~~~-~l~e~~~~~~~~~~~~~ 320 (322)
T PLN02986 292 VEKVKN-LGVEFT-PMKSSLRDTILSLKEKC 320 (322)
T ss_pred HHHHHH-cCCccc-CHHHHHHHHHHHHHHcC
Confidence 999955 999998 99999999999998754
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=300.23 Aligned_cols=303 Identities=34% Similarity=0.533 Sum_probs=241.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC-cE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF-DA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~-d~ 81 (347)
|+||||||+||||++|+++|+++||+|++++|......... ..+.++.+|+.|.+...++++. + |+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~--~~d~ 67 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-----------SGVEFVVLDLTDRDLVDELAKG--VPDA 67 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-----------cccceeeecccchHHHHHHHhc--CCCE
Confidence 34999999999999999999999999999998776543211 2567889999999888888874 5 99
Q ss_pred EEEccccccCCcccc-CcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC-CCCCCCCC-CCCCCCCchhhhHH
Q 040584 82 VIHFAGLKAVGESVQ-KPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP-KVVPCTEE-FPLQAMNPYGRSKL 158 (347)
Q Consensus 82 vih~a~~~~~~~~~~-~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~-~~~~~~e~-~~~~~~~~Y~~sK~ 158 (347)
|||+|+......... ++...+++|+.++.+++++|++.++++||+.||..+|+.. ...+++|+ .+..|.++|+.+|.
T Consensus 68 vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~ 147 (314)
T COG0451 68 VIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKL 147 (314)
T ss_pred EEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHH
Confidence 999999876443332 3456899999999999999999889999999998888764 33478888 67778889999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
++|..++.+... .+++++++||++||||+. ... ....+.. ++.+...+.. .....+ ++...++++
T Consensus 148 ~~E~~~~~~~~~-~~~~~~ilR~~~vyGp~~-----~~~-~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~i 213 (314)
T COG0451 148 AAEQLLRAYARL-YGLPVVILRPFNVYGPGD-----KPD-LSSGVVSAFIRQLLKGEP-IIVIGG------DGSQTRDFV 213 (314)
T ss_pred HHHHHHHHHHHH-hCCCeEEEeeeeeeCCCC-----CCC-CCcCcHHHHHHHHHhCCC-cceEeC------CCceeEeeE
Confidence 999999999874 489999999999999942 222 2222333 3444555543 233333 678889999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC-cccHHHHHHHHHHHhCCCCC-cccCC--CCCCCchhhccChHHHHHh
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGK-GTSVLEMVAAFEKASGKKIP-LVKSG--RRPGDAEIVYASTEKAERE 313 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~-~~s~~e~~~~i~~~~g~~~~-~~~~~--~~~~~~~~~~~d~~k~~~~ 313 (347)
|++|+++++..++++. . .. .||+++++ ..+++|+++.+.+.+|.+.+ +...+ ..........+|++|+++.
T Consensus 214 ~v~D~a~~~~~~~~~~---~-~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (314)
T COG0451 214 YVDDVADALLLALENP---D-GG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAA 288 (314)
T ss_pred eHHHHHHHHHHHHhCC---C-Cc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHH
Confidence 9999999999999982 2 22 99999997 89999999999999998866 33333 2334456778899999999
Q ss_pred cCCcccccHHHHHHHHHHHHhhCC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
|||.|+.++++++.++++|+..+.
T Consensus 289 lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 289 LGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999998763
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=284.91 Aligned_cols=306 Identities=20% Similarity=0.212 Sum_probs=231.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+||||+||||++++++|+++||.|++..|++...+ ..+.+.++.+. .++...+.+||.|++++.++++ +||.
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k-~~~~L~~l~~a-~~~l~l~~aDL~d~~sf~~ai~--gcdg 81 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEK-KTEHLRKLEGA-KERLKLFKADLLDEGSFDKAID--GCDG 81 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhh-hHHHHHhcccC-cccceEEeccccccchHHHHHh--CCCE
Confidence 589999999999999999999999999999999887632 23344444432 3468899999999999999999 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCC-----CCCCCCCCCCCCCC------
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGW-----PKVVPCTEEFPLQA------ 149 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~-----~~~~~~~e~~~~~~------ 149 (347)
|||.|.+..+.... ...++.+..+.|+.|++++|++.. ++|+|++||..+-.. .....++|+.+.++
T Consensus 82 VfH~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~ 160 (327)
T KOG1502|consen 82 VFHTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCK 160 (327)
T ss_pred EEEeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhh
Confidence 99999987654333 334789999999999999999987 999999999876543 23345677765332
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.+.|..||..+|+.+++++.+. +++.+.+-|+.|+||.- .+ ........+....+|......
T Consensus 161 ~~~Y~~sK~lAEkaAw~fa~e~-~~~lv~inP~lV~GP~l-----~~--~l~~s~~~~l~~i~G~~~~~~---------- 222 (327)
T KOG1502|consen 161 KLWYALSKTLAEKAAWEFAKEN-GLDLVTINPGLVFGPGL-----QP--SLNSSLNALLKLIKGLAETYP---------- 222 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CccEEEecCCceECCCc-----cc--ccchhHHHHHHHHhcccccCC----------
Confidence 3689999999999999999996 99999999999999942 22 122233455566676543322
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCC-CcccCCCCCCCchhhccChH
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI-PLVKSGRRPGDAEIVYASTE 308 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~d~~ 308 (347)
+....||||+|+|+|++++++. +.+. +.|.+.+.. .++.|+++.+.+.+..-. +.....-.........++++
T Consensus 223 -n~~~~~VdVrDVA~AHv~a~E~---~~a~-GRyic~~~~-~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~ 296 (327)
T KOG1502|consen 223 -NFWLAFVDVRDVALAHVLALEK---PSAK-GRYICVGEV-VSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSE 296 (327)
T ss_pred -CCceeeEeHHHHHHHHHHHHcC---cccC-ceEEEecCc-ccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccH
Confidence 3344599999999999999998 3333 778776554 569999999998877433 11111111122233468999
Q ss_pred HHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 309 KAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 309 k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
|++++.||++. +++|.+.+++++++...
T Consensus 297 k~k~lg~~~~~-~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 297 KLKSLGGFKFR-PLEETLSDTVESLREKG 324 (327)
T ss_pred HHHhcccceec-ChHHHHHHHHHHHHHhc
Confidence 99887668888 99999999999998754
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=295.67 Aligned_cols=295 Identities=26% Similarity=0.394 Sum_probs=228.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+||||+||||+++++.|+++|++|++++|++...... ...+++.+.+|+.|.+++.++++ ++|+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~~D~~~~~~l~~~~~--~~d~v 68 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL----------EGLDVEIVEGDLRDPASLRKAVA--GCRAL 68 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc----------ccCCceEEEeeCCCHHHHHHHHh--CCCEE
Confidence 5899999999999999999999999999999876543211 12367889999999999999998 59999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC-CCCCCCCCCCCCCC---CCchhhhHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW-PKVVPCTEEFPLQA---MNPYGRSKL 158 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~-~~~~~~~e~~~~~~---~~~Y~~sK~ 158 (347)
||+|+... .....+...+++|+.++.++++++++.+++++|++||..+||. ....+++|+.+..+ .+.|+.+|.
T Consensus 69 i~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~ 146 (328)
T TIGR03466 69 FHVAADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKF 146 (328)
T ss_pred EEeceecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHH
Confidence 99998542 2334567789999999999999999988999999999999985 34557788877654 468999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
++|++++.+.... +++++++||+++|||+... ......++.....+..+.. .+...+++|
T Consensus 147 ~~e~~~~~~~~~~-~~~~~ilR~~~~~G~~~~~--------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~ 206 (328)
T TIGR03466 147 LAEQAALEMAAEK-GLPVVIVNPSTPIGPRDIK--------PTPTGRIIVDFLNGKMPAY-----------VDTGLNLVH 206 (328)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCCccCCCCCCC--------CCcHHHHHHHHHcCCCcee-----------eCCCcceEE
Confidence 9999999988764 8999999999999984211 0112223444444332211 122358999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC-------------------CCCC
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR-------------------RPGD 299 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-------------------~~~~ 299 (347)
++|+++++..++++ ...++.|+++ ++.+|+.|+++.+++.+|.+.+....+. .+..
T Consensus 207 v~D~a~a~~~~~~~----~~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (328)
T TIGR03466 207 VDDVAEGHLLALER----GRIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRV 281 (328)
T ss_pred HHHHHHHHHHHHhC----CCCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999876 2345788885 6889999999999999997654332221 1100
Q ss_pred --------chhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 300 --------AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 300 --------~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
.....+|++|+++.|||+|+ +++++|+++++||+++.
T Consensus 282 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~~ 326 (328)
T TIGR03466 282 TVDGVRMAKKKMFFSSAKAVRELGYRQR-PAREALRDAVEWFRANG 326 (328)
T ss_pred CHHHHHHHhccCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHhC
Confidence 12446799999999999997 99999999999998874
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=295.54 Aligned_cols=278 Identities=24% Similarity=0.271 Sum_probs=205.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
||||||||+|+||++|++.|.++|++|+++.|. ..|+.|.+.+.++++..++|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-------------------------~~dl~d~~~~~~~~~~~~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS-------------------------DLDLTDPEAVAKLLEAFKPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-------------------------CS-TTSHHHHHHHHHHH--SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-------------------------hcCCCCHHHHHHHHHHhCCCeE
Confidence 799999999999999999999999999998664 3689999999999987789999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
|||||.......+.+++..+++|+.++.+|+++|++.+. ++||+||..||+.....+++|+++..|.+.||.+|.++|+
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~~E~ 134 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLEGEQ 134 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHHHHH
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHHHHH
Confidence 999998877778888999999999999999999999887 9999999999987778889999999999999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
.++.... ...++|++.+||++ ...+.. ++..+..++ .+.++ .++.++++|++|
T Consensus 135 ~v~~~~~-----~~~IlR~~~~~g~~-----------~~~~~~~~~~~~~~~~--~i~~~--------~d~~~~p~~~~d 188 (286)
T PF04321_consen 135 AVRAACP-----NALILRTSWVYGPS-----------GRNFLRWLLRRLRQGE--PIKLF--------DDQYRSPTYVDD 188 (286)
T ss_dssp HHHHH-S-----SEEEEEE-SEESSS-----------SSSHHHHHHHHHHCTS--EEEEE--------SSCEE--EEHHH
T ss_pred HHHHhcC-----CEEEEecceecccC-----------CCchhhhHHHHHhcCC--eeEee--------CCceeCCEEHHH
Confidence 9987432 67999999999973 123554 445555544 44442 477899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-cccCC-----CCCCCchhhccChHHHHHhcC
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-LVKSG-----RRPGDAEIVYASTEKAERELN 315 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~-----~~~~~~~~~~~d~~k~~~~lg 315 (347)
+|+++..++++........++||+++++.+|..|+++.+++.+|.+.. +...+ .....+....+|++|+++.||
T Consensus 189 lA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g 268 (286)
T PF04321_consen 189 LARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLG 268 (286)
T ss_dssp HHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTT
T ss_pred HHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccC
Confidence 999999999984322234699999999999999999999999997763 32221 122345567799999999999
Q ss_pred CcccccHHHHHHHHHHHH
Q 040584 316 WKAKYGIDEMCRDQWNWA 333 (347)
Q Consensus 316 ~~p~~~~~~~i~~~~~~~ 333 (347)
++++ +|+++|+++++-|
T Consensus 269 ~~~~-~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 269 IKPP-PWREGLEELVKQY 285 (286)
T ss_dssp S----BHHHHHHHHHHHH
T ss_pred CCCc-CHHHHHHHHHHHh
Confidence 9998 9999999999755
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=287.58 Aligned_cols=273 Identities=24% Similarity=0.243 Sum_probs=217.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
+|||||||||||+++++.|+++||+|+++.|+ .+|+.|.+.+.++++..++|+||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-------------------------~~d~~~~~~~~~~~~~~~~d~vi 55 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS-------------------------QLDLTDPEALERLLRAIRPDAVV 55 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-------------------------ccCCCCHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999998763 26899999999999876689999
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 163 (347)
|+|+..........+...+++|+.++.+++++|++.+. ++|++||.++|+.....+++|+++..+.+.|+.+|.++|.+
T Consensus 56 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~~~K~~~E~~ 134 (287)
T TIGR01214 56 NTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQA 134 (287)
T ss_pred ECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCCCCCcchhhHHHHHHHHH
Confidence 99997654333345567889999999999999998875 89999999999877777899998888899999999999999
Q ss_pred HHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 164 ~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
++.+ +.+++++||+++|||+.. ..+.. ++..+..+. .+... +++.++++|++|+
T Consensus 135 ~~~~-----~~~~~ilR~~~v~G~~~~----------~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~v~v~Dv 189 (287)
T TIGR01214 135 IRAA-----GPNALIVRTSWLYGGGGG----------RNFVRTMLRLAGRGE--ELRVV--------DDQIGSPTYAKDL 189 (287)
T ss_pred HHHh-----CCCeEEEEeeecccCCCC----------CCHHHHHHHHhhcCC--CceEe--------cCCCcCCcCHHHH
Confidence 9864 568999999999998410 12333 444444443 33332 3467899999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCccc-----------CCCCCCCchhhccChHHHH
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK-----------SGRRPGDAEIVYASTEKAE 311 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~-----------~~~~~~~~~~~~~d~~k~~ 311 (347)
++++..+++. ....+++||+++++.+|+.|+++.+++.+|.+..... .+..........+|++|++
T Consensus 190 a~a~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 266 (287)
T TIGR01214 190 ARVIAALLQR---LARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLV 266 (287)
T ss_pred HHHHHHHHhh---ccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHH
Confidence 9999999987 2245689999999999999999999999997643111 0111122345679999999
Q ss_pred HhcCCcccccHHHHHHHHHH
Q 040584 312 RELNWKAKYGIDEMCRDQWN 331 (347)
Q Consensus 312 ~~lg~~p~~~~~~~i~~~~~ 331 (347)
+.|||++ .+++++|.++++
T Consensus 267 ~~lg~~~-~~~~~~l~~~~~ 285 (287)
T TIGR01214 267 KTLGTPL-PHWREALRAYLQ 285 (287)
T ss_pred HHcCCCC-ccHHHHHHHHHh
Confidence 9999955 499999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=296.42 Aligned_cols=287 Identities=22% Similarity=0.297 Sum_probs=218.6
Q ss_pred CCceEEEE----cCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHH----HHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 1 MAKNILVI----GGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAV----AKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 1 m~~~vlIt----GatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
|+|+|||| |||||||++|++.|+++||+|+++.|+........ ..+..+. ..+++++.+|+.| +.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~---~~~v~~v~~D~~d---~~~ 124 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS---SAGVKTVWGDPAD---VKS 124 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh---hcCceEEEecHHH---HHh
Confidence 56899999 99999999999999999999999999865422110 0111110 1357889999876 455
Q ss_pred HHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 73 VFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 73 ~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
++...++|+|||+++. +..++.+++++|++.+++|||++||.++||.....+..|+.+..|..
T Consensus 125 ~~~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~- 187 (378)
T PLN00016 125 KVAGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKA- 187 (378)
T ss_pred hhccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcc-
Confidence 5544479999999752 24567889999999999999999999999977666777776665543
Q ss_pred hhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCc
Q 040584 153 YGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
+|..+|.+++. .+++++++||+++|||... ..+.. ++.++..++ .+.++| ++.
T Consensus 188 ---sK~~~E~~l~~-----~~l~~~ilRp~~vyG~~~~----------~~~~~~~~~~~~~~~--~i~~~g------~g~ 241 (378)
T PLN00016 188 ---GHLEVEAYLQK-----LGVNWTSFRPQYIYGPGNN----------KDCEEWFFDRLVRGR--PVPIPG------SGI 241 (378)
T ss_pred ---hHHHHHHHHHH-----cCCCeEEEeceeEECCCCC----------CchHHHHHHHHHcCC--ceeecC------CCC
Confidence 89999998764 2889999999999998421 11222 445555554 344555 688
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC----------CCCch
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR----------PGDAE 301 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------~~~~~ 301 (347)
+.++++|++|+++++..++.+ +...+++||+++++.+|+.|+++.+.+.+|.+..+...+.. +....
T Consensus 242 ~~~~~i~v~Dva~ai~~~l~~---~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~ 318 (378)
T PLN00016 242 QLTQLGHVKDLASMFALVVGN---PKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQ 318 (378)
T ss_pred eeeceecHHHHHHHHHHHhcC---ccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCcccccccccccc
Confidence 999999999999999999986 33456999999999999999999999999987643321111 11223
Q ss_pred hhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCC
Q 040584 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYG 339 (347)
Q Consensus 302 ~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~ 339 (347)
..+.|++|++++|||+|+++++|+|+++++||+.+++.
T Consensus 319 ~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~ 356 (378)
T PLN00016 319 HFFASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRD 356 (378)
T ss_pred ccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45579999999999999999999999999999887544
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=272.14 Aligned_cols=271 Identities=25% Similarity=0.270 Sum_probs=229.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
+|||||++|++|+.|++.|. .+++|++++|.. +|++|.+.+.+++++.+||+||
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-------------------------~Ditd~~~v~~~i~~~~PDvVI 55 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE-------------------------LDITDPDAVLEVIRETRPDVVI 55 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc-------------------------ccccChHHHHHHHHhhCCCEEE
Confidence 49999999999999999999 779999987641 6999999999999988899999
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 163 (347)
|+|+++.....+..++..+.+|..++.+++++|++.|. ++||+||.+||....+.++.|+++..|.+.||.||.+.|..
T Consensus 56 n~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~ 134 (281)
T COG1091 56 NAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEA 134 (281)
T ss_pred ECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHHH
Confidence 99999998888888999999999999999999999987 89999999999878888999999999999999999999999
Q ss_pred HHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 164 ~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
++++. -...++|.++|||.++ .++.. +++....++ .+.++ .++..+++++.|+
T Consensus 135 v~~~~-----~~~~I~Rtswv~g~~g-----------~nFv~tml~la~~~~--~l~vv--------~Dq~gsPt~~~dl 188 (281)
T COG1091 135 VRAAG-----PRHLILRTSWVYGEYG-----------NNFVKTMLRLAKEGK--ELKVV--------DDQYGSPTYTEDL 188 (281)
T ss_pred HHHhC-----CCEEEEEeeeeecCCC-----------CCHHHHHHHHhhcCC--ceEEE--------CCeeeCCccHHHH
Confidence 99864 3569999999999641 23554 555555554 34432 5789999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcc-cC-----CCCCCCchhhccChHHHHHhcCC
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-KS-----GRRPGDAEIVYASTEKAERELNW 316 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~-~~-----~~~~~~~~~~~~d~~k~~~~lg~ 316 (347)
|+++..++.. ...+++||+++...+|+.|+++.|.+.++.+.... .. +....++....+|+.|+++.+|+
T Consensus 189 A~~i~~ll~~----~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~ 264 (281)
T COG1091 189 ADAILELLEK----EKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGL 264 (281)
T ss_pred HHHHHHHHhc----cccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCC
Confidence 9999999887 33446999998888999999999999998655322 11 22234456677999999999999
Q ss_pred cccccHHHHHHHHHHH
Q 040584 317 KAKYGIDEMCRDQWNW 332 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~ 332 (347)
+|. +|+++++++++.
T Consensus 265 ~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 265 SLP-EWREALKALLDE 279 (281)
T ss_pred CCc-cHHHHHHHHHhh
Confidence 999 999999998864
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=264.12 Aligned_cols=318 Identities=22% Similarity=0.283 Sum_probs=262.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+.||||-||+-|++|++.|+++||+|+++.|..+......-.+.+..-....++.++.+||+|...+.++++..+||
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 78999999999999999999999999999998776543221111222222223456889999999999999999999999
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC--CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC--KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~--~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
-|+|+||+...+.+.+.|....+++..|+.+++++.+..+. .||...||+..||.....|.+|.+|..|.+||+.+|.
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKl 160 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL 160 (345)
T ss_pred hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHHHHHHH
Confidence 99999999988889999999999999999999999998764 3999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
-+..+..-|.+.+ |+-.|.=.++|=-+| . +...-+.+.+...+.++..|....+.+ | +-+..|||-|
T Consensus 161 Ya~W~tvNYResY-gl~AcnGILFNHESP----~-Rge~FVTRKIt~ava~Ik~G~q~~l~l-G------NldAkRDWG~ 227 (345)
T COG1089 161 YAYWITVNYRESY-GLFACNGILFNHESP----L-RGETFVTRKITRAVARIKLGLQDKLYL-G------NLDAKRDWGH 227 (345)
T ss_pred HHHheeeehHhhc-CceeecceeecCCCC----C-CccceehHHHHHHHHHHHccccceEEe-c------cccccccccc
Confidence 9999999998886 888887666663333 3 222234556666778888888776653 4 7899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc-------------------ccCC--CCC
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL-------------------VKSG--RRP 297 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~-------------------~~~~--~~~ 297 (347)
..|.++++++++++.. ...|++++|+..|++|+++..++..|.+..+ .+.| ++|
T Consensus 228 A~DYVe~mwlmLQq~~-----PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRP 302 (345)
T COG1089 228 AKDYVEAMWLMLQQEE-----PDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRP 302 (345)
T ss_pred hHHHHHHHHHHHccCC-----CCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCc
Confidence 9999999999998722 2789999999999999999999999965442 1122 456
Q ss_pred CCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 298 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
.+......|.+|+++.|||+|+++++|.++.|+++..+.
T Consensus 303 aEV~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~ 341 (345)
T COG1089 303 AEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEA 341 (345)
T ss_pred hhhhhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHHH
Confidence 777888899999999999999999999999999876653
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=277.68 Aligned_cols=256 Identities=28% Similarity=0.405 Sum_probs=198.9
Q ss_pred EEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 6 LVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 6 lItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
|||||+||||++|+++|+++| ++|+++++....... ..+.. ....+++.+|++|.+++.++++ ++|+||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~-----~~~~~~~~~Di~d~~~l~~a~~--g~d~V~ 71 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK-----SGVKEYIQGDITDPESLEEALE--GVDVVF 71 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc-----ccceeEEEeccccHHHHHHHhc--CCceEE
Confidence 699999999999999999999 799998876654321 11111 1233489999999999999999 699999
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC-CCCC---CCCCCCC--CCCCchhhhH
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP-KVVP---CTEEFPL--QAMNPYGRSK 157 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~-~~~~---~~e~~~~--~~~~~Y~~sK 157 (347)
|+|++..... ....+.++++|+.||++++++|++.+++||||+||..+++.. ...+ .+|+.|. .+.+.|+.||
T Consensus 72 H~Aa~~~~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK 150 (280)
T PF01073_consen 72 HTAAPVPPWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESK 150 (280)
T ss_pred EeCccccccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHH
Confidence 9999765422 345567999999999999999999999999999999998762 1222 3555543 4678999999
Q ss_pred HHHHHHHHHHhh----hcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCce
Q 040584 158 LFIEEICRDVHR----SDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 158 ~~~e~~~~~~~~----~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
..+|++++++.. ....+.+++|||+.||||+. ..+.+ +......|. .+..+| ++..
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d-----------~~~~~~~~~~~~~g~--~~~~~g------~~~~ 211 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGD-----------QRLVPRLVKMVRSGL--FLFQIG------DGNN 211 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCccc-----------ccccchhhHHHHhcc--cceeec------CCCc
Confidence 999999998765 11258999999999999842 12333 333333442 233344 6778
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCC----CCCCeeEEccCCCccc-HHHHHHHHHHHhCCCCCc
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDP----KVGCEVYNLGTGKGTS-VLEMVAAFEKASGKKIPL 290 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~----~~~~~~~nv~~~~~~s-~~e~~~~i~~~~g~~~~~ 290 (347)
..+++||+|+|.+++++++...++ ...|+.|++++++++. +.|+...+.+.+|.+.+.
T Consensus 212 ~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 212 LFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred eECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 899999999999999998765433 3678999999999999 999999999999988764
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=281.31 Aligned_cols=275 Identities=22% Similarity=0.310 Sum_probs=211.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|+||||||+||||++++++|+++| ++|++++|+..........+ . ..++.++.+|++|.+.+.++++ ++
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~--~~~~~~v~~Dl~d~~~l~~~~~--~i 75 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----P--APCLRFFIGDVRDKERLTRALR--GV 75 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----C--CCcEEEEEccCCCHHHHHHHHh--cC
Confidence 4899999999999999999999986 78999887654332211111 1 2468889999999999999998 59
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||+||.........++...+++|+.++.+++++|++.++++||++||.. +..|.++|+.+|.+
T Consensus 76 D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~--------------~~~p~~~Y~~sK~~ 141 (324)
T TIGR03589 76 DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK--------------AANPINLYGATKLA 141 (324)
T ss_pred CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--------------CCCCCCHHHHHHHH
Confidence 9999999976443344566789999999999999999998888999999964 23456789999999
Q ss_pred HHHHHHHHhhh--cCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHH-HHHcCCCCceEEecccCCCCCCceeeee
Q 040584 160 IEEICRDVHRS--DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVT-QVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 160 ~e~~~~~~~~~--~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
+|.+++.++.. ..+++++++|||++|||.. .+.+++. +...+. ..+++. ++.+.++|
T Consensus 142 ~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~------------~~i~~~~~~~~~~~-~~~~i~-------~~~~~r~~ 201 (324)
T TIGR03589 142 SDKLFVAANNISGSKGTRFSVVRYGNVVGSRG------------SVVPFFKSLKEEGV-TELPIT-------DPRMTRFW 201 (324)
T ss_pred HHHHHHHHHhhccccCcEEEEEeecceeCCCC------------CcHHHHHHHHHhCC-CCeeeC-------CCCceEee
Confidence 99999876432 2489999999999999831 2455444 334443 223332 46788999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCc-hhhccChHHHHHhcC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDA-EIVYASTEKAERELN 315 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg 315 (347)
+|++|++++++.++++ ...+++|+ +++..+++.|+++.+.+.++ +...+.++.+. ....+|++|+++.||
T Consensus 202 i~v~D~a~a~~~al~~----~~~~~~~~-~~~~~~sv~el~~~i~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~lg 272 (324)
T TIGR03589 202 ITLEQGVNFVLKSLER----MLGGEIFV-PKIPSMKITDLAEAMAPECP----HKIVGIRPGEKLHEVMITEDDARHTYE 272 (324)
T ss_pred EEHHHHHHHHHHHHhh----CCCCCEEc-cCCCcEEHHHHHHHHHhhCC----eeEeCCCCCchhHhhhcChhhhhhhcC
Confidence 9999999999999986 12357784 66677999999999998643 22233344442 446689999999999
Q ss_pred CcccccHHHHHH
Q 040584 316 WKAKYGIDEMCR 327 (347)
Q Consensus 316 ~~p~~~~~~~i~ 327 (347)
|+|++++++++.
T Consensus 273 ~~~~~~l~~~~~ 284 (324)
T TIGR03589 273 LGDYYAILPSIS 284 (324)
T ss_pred CCCeEEEccccc
Confidence 999999999986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=284.28 Aligned_cols=296 Identities=16% Similarity=0.152 Sum_probs=216.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc--cCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG--YQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
++|+||||||+||||++|+++|+++||+|+++.|+....... ..+..... ....++.++.+|++|.+++.++++ +
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~--~ 128 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD--G 128 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH--h
Confidence 358999999999999999999999999999887764432221 11111100 001257889999999999999998 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccc--cccCCC--CC--CCCCCCC------
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSA--TAYGWP--KV--VPCTEEF------ 145 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~--~~yg~~--~~--~~~~e~~------ 145 (347)
+|.|||+|+...............++|+.++.+++++|++. +++|||++||. .+||.. .. .+++|+.
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~ 208 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESF 208 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhh
Confidence 99999999975432211222355678999999999999986 79999999996 577642 12 2355543
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
+..|.++|+.||.++|.+++.+++.. +++++++||++||||+.. .. ... .+.+...+. +.++|
T Consensus 209 ~~~p~~~Y~~sK~~~E~~~~~~~~~~-gl~~v~lRp~~vyGp~~~-----~~-~~~----~~~~~~~g~---~~~~g--- 271 (367)
T PLN02686 209 CRDNKLWYALGKLKAEKAAWRAARGK-GLKLATICPALVTGPGFF-----RR-NST----ATIAYLKGA---QEMLA--- 271 (367)
T ss_pred cccccchHHHHHHHHHHHHHHHHHhc-CceEEEEcCCceECCCCC-----CC-CCh----hHHHHhcCC---CccCC---
Confidence 33466789999999999999988775 899999999999999421 10 011 122344443 22333
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC-CCCchhhc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR-PGDAEIVY 304 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~ 304 (347)
++ .++|+||+|++++++.+++... ....+++| +++++.++++|+++.+.+.+|.+......+.+ +.+.....
T Consensus 272 ---~g--~~~~v~V~Dva~A~~~al~~~~-~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~ 344 (367)
T PLN02686 272 ---DG--LLATADVERLAEAHVCVYEAMG-NKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFE 344 (367)
T ss_pred ---CC--CcCeEEHHHHHHHHHHHHhccC-CCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCccccc
Confidence 33 3579999999999999998521 12345678 77889999999999999999987665555544 56777888
Q ss_pred cChHHHHHhcCCcccccHH
Q 040584 305 ASTEKAERELNWKAKYGID 323 (347)
Q Consensus 305 ~d~~k~~~~lg~~p~~~~~ 323 (347)
.|++|+++.|||.|+-.++
T Consensus 345 ~d~~kl~~~l~~~~~~~~~ 363 (367)
T PLN02686 345 LSNKKLSRLMSRTRRCCYD 363 (367)
T ss_pred ccHHHHHHHHHHhhhcccc
Confidence 9999999999999985443
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=270.17 Aligned_cols=307 Identities=25% Similarity=0.338 Sum_probs=240.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.+++||||+||+|++|+++|++++ .++++++..+.......+.... ...+++.+.+|+.|..++.++++ ++
T Consensus 5 ~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~----~~~~v~~~~~D~~~~~~i~~a~~--~~- 77 (361)
T KOG1430|consen 5 LSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF----RSGRVTVILGDLLDANSISNAFQ--GA- 77 (361)
T ss_pred CEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc----cCCceeEEecchhhhhhhhhhcc--Cc-
Confidence 689999999999999999999998 8999998776532211111111 24688999999999999999999 57
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCC-CCCCCCCCCC--CCCchhhhH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKV-VPCTEEFPLQ--AMNPYGRSK 157 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~-~~~~e~~~~~--~~~~Y~~sK 157 (347)
.|+|||+.....-...+++..+++|+.||.+++++|++.+++++||+||..|...... ...+|+.|.. ..++|+.||
T Consensus 78 ~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~sK 157 (361)
T KOG1430|consen 78 VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGESK 157 (361)
T ss_pred eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCccccccccchHH
Confidence 8999988765544555788999999999999999999999999999999999866554 4456665544 447999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHH-HHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPF-VTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
..+|+++++.... .++..|+|||..||||+ + ..+.+. +..+..|.. +...| +++.+.++
T Consensus 158 a~aE~~Vl~an~~-~~l~T~aLR~~~IYGpg-----d------~~~~~~i~~~~~~g~~--~f~~g------~~~~~~~~ 217 (361)
T KOG1430|consen 158 ALAEKLVLEANGS-DDLYTCALRPPGIYGPG-----D------KRLLPKIVEALKNGGF--LFKIG------DGENLNDF 217 (361)
T ss_pred HHHHHHHHHhcCC-CCeeEEEEccccccCCC-----C------ccccHHHHHHHHccCc--eEEee------ccccccce
Confidence 9999999998753 37899999999999994 2 234443 444455542 33334 67889999
Q ss_pred eeHHHHHHHHHHHHHhcC--CCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-cccCC-------------------
Q 040584 237 IHVVDLADGHIAALRKLD--DPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-LVKSG------------------- 294 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~--~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~------------------- 294 (347)
++++.++.+++++..... .+...|+.|+++++++....++...+.+.+|...+ ....|
T Consensus 218 ~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~ 297 (361)
T KOG1430|consen 218 TYGENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLR 297 (361)
T ss_pred EEechhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhcc
Confidence 999999999999887654 24468999999999998888888899999998877 22211
Q ss_pred -CCCCC--------chhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 295 -RRPGD--------AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 295 -~~~~~--------~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
..+.. .....+++.|+++.|||.|.+++++++.+++.|+...
T Consensus 298 p~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~ 348 (361)
T KOG1430|consen 298 PYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASE 348 (361)
T ss_pred CCCCCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhh
Confidence 11110 1245689999999999999999999999999988654
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=264.03 Aligned_cols=235 Identities=36% Similarity=0.568 Sum_probs=198.4
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIH 84 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (347)
|||||||||||++++++|+++|++|+.+.|+.......... .++.++.+|+.|.+.+.++++...+|+|||
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~---------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~ 71 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK---------LNVEFVIGDLTDKEQLEKLLEKANIDVVIH 71 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH---------TTEEEEESETTSHHHHHHHHHHHTESEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc---------ceEEEEEeeccccccccccccccCceEEEE
Confidence 79999999999999999999999999998887765432221 278899999999999999998756799999
Q ss_pred ccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHH
Q 040584 85 FAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEIC 164 (347)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~ 164 (347)
+|+..............++.|+.++.+++++|++.+++++|++||..+|+.....+++|+.+..|.++|+.+|..+|+++
T Consensus 72 ~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~ 151 (236)
T PF01370_consen 72 LAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELL 151 (236)
T ss_dssp EBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHH
T ss_pred eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99975422334567788999999999999999999999999999999999987788899998899999999999999999
Q ss_pred HHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHH
Q 040584 165 RDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243 (347)
Q Consensus 165 ~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a 243 (347)
+.+.++. +++++++||+++|||. ........+. .++.++..++. +.++| ++++.++++|++|++
T Consensus 152 ~~~~~~~-~~~~~~~R~~~vyG~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~i~v~D~a 216 (236)
T PF01370_consen 152 RDYAKKY-GLRVTILRPPNVYGPG------NPNNNSSSFLPSLIRQALKGKP--IKIPG------DGSQVRDFIHVDDLA 216 (236)
T ss_dssp HHHHHHH-TSEEEEEEESEEESTT------SSSSSTSSHHHHHHHHHHTTSS--EEEES------TSSCEEEEEEHHHHH
T ss_pred ccccccc-cccccccccccccccc------ccccccccccchhhHHhhcCCc--ccccC------CCCCccceEEHHHHH
Confidence 9998876 9999999999999995 1112223344 47778877764 66666 789999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeeEEcc
Q 040584 244 DGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
++++.++++. ...+++||++
T Consensus 217 ~~~~~~~~~~---~~~~~~yNig 236 (236)
T PF01370_consen 217 EAIVAALENP---KAAGGIYNIG 236 (236)
T ss_dssp HHHHHHHHHS---CTTTEEEEES
T ss_pred HHHHHHHhCC---CCCCCEEEeC
Confidence 9999999992 3467999985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=242.64 Aligned_cols=298 Identities=24% Similarity=0.269 Sum_probs=237.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+++|||||++|.+|+++++.+...|. +-.++.-+ -.+||++..+.+++|++.++
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s------------------------kd~DLt~~a~t~~lF~~ekP 56 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS------------------------KDADLTNLADTRALFESEKP 56 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc------------------------ccccccchHHHHHHHhccCC
Confidence 58999999999999999999999886 33333211 12699999999999999899
Q ss_pred cEEEEccccccC-CccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC-----CCCCCCch
Q 040584 80 DAVIHFAGLKAV-GESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPY 153 (347)
Q Consensus 80 d~vih~a~~~~~-~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~-----~~~~~~~Y 153 (347)
..|||+|++..- -.....+.+.++.|+..-.|++..|-+.|+++++++.|.+.|......|++|.. |.+..-.|
T Consensus 57 thVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gY 136 (315)
T KOG1431|consen 57 THVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGY 136 (315)
T ss_pred ceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHH
Confidence 999999997542 122345678899999999999999999999999999999999888888888863 33445679
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
+.+|..+.-.-+.|..++ |...+.+.|.++|||+...-.+...-++. ++.-+..+.......+.+|| +|+..
T Consensus 137 syAKr~idv~n~aY~~qh-g~~~tsviPtNvfGphDNfnpe~sHVlPa-li~r~h~ak~~gtd~~~VwG------sG~Pl 208 (315)
T KOG1431|consen 137 SYAKRMIDVQNQAYRQQH-GRDYTSVIPTNVFGPHDNFNPENSHVLPA-LIHRFHEAKRNGTDELTVWG------SGSPL 208 (315)
T ss_pred HHHHHHHHHHHHHHHHHh-CCceeeeccccccCCCCCCCcccccchHH-HHHHHHHHHhcCCceEEEec------CCChH
Confidence 999999888889998887 99999999999999975322222221111 22222223333445789999 89999
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC--cccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHH
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK--GTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAE 311 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~--~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 311 (347)
|+|+|++|+|++++++++. ...-+.++++.++ .+|++|+++.+.++++.+....+..-++.-......|++|++
T Consensus 209 RqFiys~DLA~l~i~vlr~----Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~ 284 (315)
T KOG1431|consen 209 RQFIYSDDLADLFIWVLRE----YEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLR 284 (315)
T ss_pred HHHhhHhHHHHHHHHHHHh----hcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHH
Confidence 9999999999999999997 3344778888887 799999999999999999887776555555567788999996
Q ss_pred HhcCCccccc-HHHHHHHHHHHHhhC
Q 040584 312 RELNWKAKYG-IDEMCRDQWNWASKN 336 (347)
Q Consensus 312 ~~lg~~p~~~-~~~~i~~~~~~~~~~ 336 (347)
+ |+|.|+++ ++++|.++++||.+|
T Consensus 285 s-l~pd~~ft~l~~ai~~t~~Wy~~N 309 (315)
T KOG1431|consen 285 S-LLPDFKFTPLEQAISETVQWYLDN 309 (315)
T ss_pred H-hCCCcccChHHHHHHHHHHHHHHh
Confidence 6 68999996 999999999999887
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=263.10 Aligned_cols=272 Identities=17% Similarity=0.178 Sum_probs=204.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+|||||||+|++|+++|+++||+|+++.|+..+... +. ..+++++.+|+.|++++.++++ ++|+|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~----l~------~~~v~~v~~Dl~d~~~l~~al~--g~d~V 68 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF----LK------EWGAELVYGDLSLPETLPPSFK--GVTAI 68 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhh----Hh------hcCCEEEECCCCCHHHHHHHHC--CCCEE
Confidence 589999999999999999999999999999987543221 11 1368899999999999999999 69999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+++... .++...+++|+.++.+++++|++.+++|||++||..+.. .+..+|..+|.++|+
T Consensus 69 i~~~~~~~-----~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~-------------~~~~~~~~~K~~~e~ 130 (317)
T CHL00194 69 IDASTSRP-----SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ-------------YPYIPLMKLKSDIEQ 130 (317)
T ss_pred EECCCCCC-----CCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc-------------cCCChHHHHHHHHHH
Confidence 99976321 234557788999999999999999999999999964321 123468899999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
+++. .+++++++||+.+|+.. +..+......+. ...+ + ++.+.+++||++|+
T Consensus 131 ~l~~-----~~l~~tilRp~~~~~~~--------------~~~~~~~~~~~~--~~~~-~------~~~~~~~~i~v~Dv 182 (317)
T CHL00194 131 KLKK-----SGIPYTIFRLAGFFQGL--------------ISQYAIPILEKQ--PIWI-T------NESTPISYIDTQDA 182 (317)
T ss_pred HHHH-----cCCCeEEEeecHHhhhh--------------hhhhhhhhccCC--ceEe-c------CCCCccCccCHHHH
Confidence 8864 38999999999888631 111111122222 1221 1 45677899999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC---------------CC---C-----
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR---------------PG---D----- 299 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------~~---~----- 299 (347)
|+++..++.. +...+++||+++++.+|++|+++.+.+.+|.+..+...|.. +. .
T Consensus 183 a~~~~~~l~~---~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 259 (317)
T CHL00194 183 AKFCLKSLSL---PETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVE 259 (317)
T ss_pred HHHHHHHhcC---ccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 9999999876 34567999999999999999999999999987554332210 00 0
Q ss_pred ----chhhccChHHHHHhcCCccc--ccHHHHHHHHHHHHhh
Q 040584 300 ----AEIVYASTEKAERELNWKAK--YGIDEMCRDQWNWASK 335 (347)
Q Consensus 300 ----~~~~~~d~~k~~~~lg~~p~--~~~~~~i~~~~~~~~~ 335 (347)
......+.+++++.||+.|. .++++++++++.-.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~ 301 (317)
T CHL00194 260 ILNTSNNFSSSMAELYKIFKIDPNELISLEDYFQEYFERILK 301 (317)
T ss_pred HHhcCCCcCCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHHH
Confidence 01122467789999999984 4899999998876665
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=279.78 Aligned_cols=254 Identities=19% Similarity=0.175 Sum_probs=194.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+||||+||||++++++|+++|++|++++|+.... + ..++.++.+|+.|.+++.++++ ++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~-------~~~v~~v~gDL~D~~~l~~al~--~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W-------PSSADFIAADIRDATAVESAMT--GADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c-------ccCceEEEeeCCCHHHHHHHHh--CCCEE
Confidence 5899999999999999999999999999998864321 0 1257789999999999999998 59999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+|+.... .+++|+.++.+++++|++.++++||++||.. |.++|+
T Consensus 66 VHlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-------------------------K~aaE~ 111 (854)
T PRK05865 66 AHCAWVRGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH-------------------------QPRVEQ 111 (854)
T ss_pred EECCCcccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-------------------------HHHHHH
Confidence 999975321 4688999999999999999999999999852 888998
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
++.. + +++++++||+++|||. ...++.++.. ..+...| ++.+.++|||++|+
T Consensus 112 ll~~----~-gl~~vILRp~~VYGP~--------------~~~~i~~ll~---~~v~~~G------~~~~~~dfIhVdDV 163 (854)
T PRK05865 112 MLAD----C-GLEWVAVRCALIFGRN--------------VDNWVQRLFA---LPVLPAG------YADRVVQVVHSDDA 163 (854)
T ss_pred HHHH----c-CCCEEEEEeceEeCCC--------------hHHHHHHHhc---CceeccC------CCCceEeeeeHHHH
Confidence 7753 2 8999999999999983 1123333221 1121112 45677899999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhC---CCCCcccCCCCC--CCchhhccChHHHHHhcCCc
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG---KKIPLVKSGRRP--GDAEIVYASTEKAERELNWK 317 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g---~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lg~~ 317 (347)
++++..+++. +...+++||+++++.+|++|+++.+.+... .+.......... .......+|++|+++.|||+
T Consensus 164 A~Ai~~aL~~---~~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~ 240 (854)
T PRK05865 164 QRLLVRALLD---TVIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQ 240 (854)
T ss_pred HHHHHHHHhC---CCcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCC
Confidence 9999998875 233458999999999999999999887432 111110110000 01123468999999999999
Q ss_pred ccccHHHHHHHHHHHHhhC
Q 040584 318 AKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 318 p~~~~~~~i~~~~~~~~~~ 336 (347)
|+++++++|+++++||+..
T Consensus 241 P~~sLeeGL~dti~~~r~r 259 (854)
T PRK05865 241 PAWNAEECLEDFTLAVRGR 259 (854)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999764
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=256.15 Aligned_cols=277 Identities=20% Similarity=0.168 Sum_probs=195.4
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIH 84 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (347)
||||||+||||+++++.|+++||+|+++.|+........ ... ..|+.. ..+...+. ++|+|||
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------------~~~--~~~~~~-~~~~~~~~--~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK------------WEG--YKPWAP-LAESEALE--GADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc------------cee--eecccc-cchhhhcC--CCCEEEE
Confidence 699999999999999999999999999999876542110 000 112222 33445555 6999999
Q ss_pred ccccccCCc--cccCcchhhhhhhhHHHHHHHHHHHcCCC--eEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 85 FAGLKAVGE--SVQKPLPYFDNNLTGTITLLEVMAAHGCK--NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 85 ~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~~~~~~~~--~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+||...... ....+..++++|+.++.+++++|++.+++ ++|+.||+.+||.....+++|+.+..+.+.|+..+...
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~~~~~~~~~~~ 143 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSPAGDDFLAELCRDW 143 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCCCCCChHHHHHHHH
Confidence 999643211 12234567889999999999999999863 57777778889977667888887655666677777777
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|..+..+. + .+++++++||+++|||.. +. ...+........... +| ++++.+++||++
T Consensus 144 e~~~~~~~-~-~~~~~~ilR~~~v~G~~~--------~~---~~~~~~~~~~~~~~~---~g------~~~~~~~~i~v~ 201 (292)
T TIGR01777 144 EEAAQAAE-D-LGTRVVLLRTGIVLGPKG--------GA---LAKMLPPFRLGLGGP---LG------SGRQWFSWIHIE 201 (292)
T ss_pred HHHhhhch-h-cCCceEEEeeeeEECCCc--------ch---hHHHHHHHhcCcccc---cC------CCCcccccEeHH
Confidence 77766443 3 379999999999999831 11 111221111111111 23 688999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC---------C-CchhhccChHHH
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP---------G-DAEIVYASTEKA 310 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------~-~~~~~~~d~~k~ 310 (347)
|+++++..++++ + ...++||+++++++|+.|+++.+++.+|.+.++. .|... . ......++++|+
T Consensus 202 Dva~~i~~~l~~---~-~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (292)
T TIGR01777 202 DLVQLILFALEN---A-SISGPVNATAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKL 276 (292)
T ss_pred HHHHHHHHHhcC---c-ccCCceEecCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHH
Confidence 999999999976 2 2347899999999999999999999999764332 22110 0 012445788999
Q ss_pred HHhcCCcccc-cHHHHH
Q 040584 311 ERELNWKAKY-GIDEMC 326 (347)
Q Consensus 311 ~~~lg~~p~~-~~~~~i 326 (347)
++ +||+|++ +++|++
T Consensus 277 ~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 277 LE-AGFQFQYPDLDEAL 292 (292)
T ss_pred Hh-cCCeeeCcChhhcC
Confidence 65 9999999 588764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=248.01 Aligned_cols=270 Identities=17% Similarity=0.171 Sum_probs=194.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|.|+||||||+||||++|+++|+++|++|+... .|+.|.+.+...++..++|
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~----------------------------~~~~~~~~v~~~l~~~~~D 59 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS----------------------------GRLENRASLEADIDAVKPT 59 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec----------------------------CccCCHHHHHHHHHhcCCC
Confidence 468999999999999999999999999997531 2345556666666655799
Q ss_pred EEEEccccccCC---ccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCC------CCCCCCCCCC-CCC
Q 040584 81 AVIHFAGLKAVG---ESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPK------VVPCTEEFPL-QAM 150 (347)
Q Consensus 81 ~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~------~~~~~e~~~~-~~~ 150 (347)
+|||+||..... .+..++...+++|+.++.+++++|++.+++ ++++||.++|+... ..+++|+++. .+.
T Consensus 60 ~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~ 138 (298)
T PLN02778 60 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTG 138 (298)
T ss_pred EEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCC
Confidence 999999976432 244577889999999999999999999885 66778888886532 2246766544 455
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
+.|+.+|.++|.+++.+.+ ..++|++.++|++. . ....++.++..+.. +... +
T Consensus 139 s~Yg~sK~~~E~~~~~y~~------~~~lr~~~~~~~~~--------~---~~~~fi~~~~~~~~--~~~~--------~ 191 (298)
T PLN02778 139 SFYSKTKAMVEELLKNYEN------VCTLRVRMPISSDL--------S---NPRNFITKITRYEK--VVNI--------P 191 (298)
T ss_pred CchHHHHHHHHHHHHHhhc------cEEeeecccCCccc--------c---cHHHHHHHHHcCCC--eeEc--------C
Confidence 8999999999999988753 46788877777521 0 01225666666542 2211 1
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc---ccCCCCC---CCchhhc
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL---VKSGRRP---GDAEIVY 304 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~---~~~~~~~---~~~~~~~ 304 (347)
.+++|++|++++++.+++. .. +++||+++++++|+.|+++.+++.+|.+..+ ...+... .......
T Consensus 192 ---~s~~yv~D~v~al~~~l~~----~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 263 (298)
T PLN02778 192 ---NSMTILDELLPISIEMAKR----NL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNE 263 (298)
T ss_pred ---CCCEEHHHHHHHHHHHHhC----CC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCcccc
Confidence 2699999999999999875 22 3699999999999999999999999964321 1111100 0111236
Q ss_pred cChHHHHHhcCCcccccHHHHHHHHHHHHhh
Q 040584 305 ASTEKAERELNWKAKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 305 ~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~ 335 (347)
+|++|+++.++=.+. ..+++++..++-.+.
T Consensus 264 Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~~~ 293 (298)
T PLN02778 264 LDTTKLKREFPELLP-IKESLIKYVFEPNKK 293 (298)
T ss_pred ccHHHHHHhcccccc-hHHHHHHHHHHHHHh
Confidence 899999998775444 678888887776643
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=274.19 Aligned_cols=308 Identities=18% Similarity=0.176 Sum_probs=219.4
Q ss_pred ceEEEEcCCCcccHHHHHHHH--hCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH------HHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLL--LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK------AALEVVF 74 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~--~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~------~~~~~~~ 74 (347)
|+|||||||||||++|+++|+ ++|++|+++.|+.... ........+ ...+++++.+|+.|+ +.+.++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~-~~~~~~~~~---~~~~v~~~~~Dl~~~~~~~~~~~~~~l- 75 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLS-RLEALAAYW---GADRVVPLVGDLTEPGLGLSEADIAEL- 75 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHH-HHHHHHHhc---CCCcEEEEecccCCccCCcCHHHHHHh-
Confidence 589999999999999999999 5899999999964322 111111111 124788999999984 455555
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC---CCCCCC
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF---PLQAMN 151 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~---~~~~~~ 151 (347)
+ ++|+||||||..... .......++|+.++.+++++|++.++++|||+||..+||.... +.+|+. +..+.+
T Consensus 76 ~--~~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~ 149 (657)
T PRK07201 76 G--DIDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFDEGQGLPT 149 (657)
T ss_pred c--CCCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccchhhcCCCC
Confidence 4 699999999975432 2345678899999999999999998999999999999986433 344443 234557
Q ss_pred chhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCc
Q 040584 152 PYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
+|+.+|.++|.++++. .+++++++||+++|||...+......+ ...+..++.+. ......++.++ .+.
T Consensus 150 ~Y~~sK~~~E~~~~~~----~g~~~~ilRp~~v~G~~~~g~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~------~~~ 217 (657)
T PRK07201 150 PYHRTKFEAEKLVREE----CGLPWRVYRPAVVVGDSRTGEMDKIDG-PYYFFKVLAKL-AKLPSWLPMVG------PDG 217 (657)
T ss_pred chHHHHHHHHHHHHHc----CCCcEEEEcCCeeeecCCCCccccCCc-HHHHHHHHHHh-ccCCccccccc------CCC
Confidence 8999999999998742 389999999999999864322111110 11122334333 11112223333 455
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCC---CcccCCCCC-----------
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI---PLVKSGRRP----------- 297 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~---~~~~~~~~~----------- 297 (347)
..++++|++|+++++..++.. +...+++||+++++++|+.|+++.+++.+|.+. +....|...
T Consensus 218 ~~~~~v~vddva~ai~~~~~~---~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~ 294 (657)
T PRK07201 218 GRTNIVPVDYVADALDHLMHK---DGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPV 294 (657)
T ss_pred CeeeeeeHHHHHHHHHHHhcC---cCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchh
Confidence 678999999999999988875 335678999999999999999999999999876 332222110
Q ss_pred -----------C--------CchhhccChHHHHHhc---CCcccccHHHHHHHHHHHHhhCC
Q 040584 298 -----------G--------DAEIVYASTEKAEREL---NWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 298 -----------~--------~~~~~~~d~~k~~~~l---g~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
. ......+|++|+++.| |+... .+++.+...++|+.+|-
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~ 355 (657)
T PRK07201 295 RRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHL 355 (657)
T ss_pred hHHHHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcC
Confidence 0 0112357899999988 55555 78999999999888874
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=249.47 Aligned_cols=278 Identities=16% Similarity=0.106 Sum_probs=195.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+||||+||||++++++|+++||+|+++.|+..... ..+.+..+.. ...+++++.+|++|.+++..++. ++|.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~-~~~~~~~l~~-~~~~~~~~~~Dl~d~~~~~~~l~--~~d~ 81 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETE-IEKEIRGLSC-EEERLKVFDVDPLDYHSILDALK--GCSG 81 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhh-HHHHHHhccc-CCCceEEEEecCCCHHHHHHHHc--CCCE
Confidence 478999999999999999999999999999988643221 1112222211 12468889999999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCCC-----CCCCCCCCCCCCC------
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGWP-----KVVPCTEEFPLQA------ 149 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~~-----~~~~~~e~~~~~~------ 149 (347)
|+|+++.... ....+..++++|+.++.+++++|.+. +++|||++||..+++.. ...+++|+.+..+
T Consensus 82 v~~~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 159 (297)
T PLN02583 82 LFCCFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKF 159 (297)
T ss_pred EEEeCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhc
Confidence 9998765432 11234678999999999999999886 58899999998765311 2345677655332
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
..+|+.||..+|+.++++++.. +++++++||++||||... . ..+ ...+.. ..+
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~-gi~~v~lrp~~v~Gp~~~-----~------~~~----~~~~~~---~~~-------- 212 (297)
T PLN02583 160 KLWHALAKTLSEKTAWALAMDR-GVNMVSINAGLLMGPSLT-----Q------HNP----YLKGAA---QMY-------- 212 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh-CCcEEEEcCCcccCCCCC-----C------chh----hhcCCc---ccC--------
Confidence 2379999999999999998765 899999999999998421 0 001 122211 111
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccC-CCCCCCchhhccChH
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS-GRRPGDAEIVYASTE 308 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~-~~~~~~~~~~~~d~~ 308 (347)
+...++||||+|+|++++.+++. +. .++.|+++++...+..++++.+.+.++.- ++... ...........++++
T Consensus 213 ~~~~~~~v~V~Dva~a~~~al~~---~~-~~~r~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ 287 (297)
T PLN02583 213 ENGVLVTVDVNFLVDAHIRAFED---VS-SYGRYLCFNHIVNTEEDAVKLAQMLSPLI-PSPPPYEMQGSEVYQQRIRNK 287 (297)
T ss_pred cccCcceEEHHHHHHHHHHHhcC---cc-cCCcEEEecCCCccHHHHHHHHHHhCCCC-CCCCcccccCCCccccccChH
Confidence 12346799999999999999986 22 33579887766556788999999887732 21110 101122345668999
Q ss_pred HHHHhcCCcc
Q 040584 309 KAERELNWKA 318 (347)
Q Consensus 309 k~~~~lg~~p 318 (347)
|++ .||++.
T Consensus 288 k~~-~l~~~~ 296 (297)
T PLN02583 288 KLN-KLMEDF 296 (297)
T ss_pred HHH-HhCccc
Confidence 995 478874
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=261.43 Aligned_cols=267 Identities=18% Similarity=0.143 Sum_probs=190.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC---eEEEEeCCCchhHH---HHHHH------H---Hhhc-----cCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY---KTVVVDNLDNASEI---AVAKV------K---ELAG-----YQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~---~v~~~~r~~~~~~~---~~~~~------~---~~~~-----~~~~~~~~~~ 61 (347)
+|+|||||||||||++|++.|++.+. +|+++.|....... ....+ . +..+ ....++.++.
T Consensus 11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~ 90 (491)
T PLN02996 11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVP 90 (491)
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEe
Confidence 47999999999999999999998653 57888887653211 11111 1 1000 0125789999
Q ss_pred cCCC-------CHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEecccccc
Q 040584 62 LDLR-------DKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAY 133 (347)
Q Consensus 62 ~Dl~-------d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~y 133 (347)
+|++ |.+.+..+++ ++|+|||+||.... ..++...+++|+.|+.+++++|++. ++++||++||+++|
T Consensus 91 GDl~~~~LGLs~~~~~~~l~~--~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vy 165 (491)
T PLN02996 91 GDISYDDLGVKDSNLREEMWK--EIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVC 165 (491)
T ss_pred cccCCcCCCCChHHHHHHHHh--CCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEe
Confidence 9998 4455677777 69999999997653 2356778899999999999999986 68899999999999
Q ss_pred CCCCC----CCCCCCC-----------------------------------------------CCCCCCchhhhHHHHHH
Q 040584 134 GWPKV----VPCTEEF-----------------------------------------------PLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 134 g~~~~----~~~~e~~-----------------------------------------------~~~~~~~Y~~sK~~~e~ 162 (347)
|...+ .++.+.. ...+.+.|+.||..+|.
T Consensus 166 G~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~ 245 (491)
T PLN02996 166 GEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEM 245 (491)
T ss_pred cCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHH
Confidence 86431 1221100 11234679999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCcc---HHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNL---MPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
+++.++. +++++++||++||||...+. .++...+ ..++.....|. ...++| ++++.+|++||
T Consensus 246 lv~~~~~---~lpv~i~RP~~V~G~~~~p~----~gwi~~~~~~~~i~~~~~~g~--~~~~~g------dg~~~~D~v~V 310 (491)
T PLN02996 246 LLGNFKE---NLPLVIIRPTMITSTYKEPF----PGWIEGLRTIDSVIVGYGKGK--LTCFLA------DPNSVLDVIPA 310 (491)
T ss_pred HHHHhcC---CCCEEEECCCEeccCCcCCC----CCcccchhhHHHHHHHhccce--EeEEec------CCCeecceecc
Confidence 9988743 89999999999999853321 1221111 12333333443 334556 78999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCC--CcccHHHHHHHHHHHhCCCC
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTG--KGTSVLEMVAAFEKASGKKI 288 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~--~~~s~~e~~~~i~~~~g~~~ 288 (347)
+|++++++.++.........+.+||++++ .++|+.|+++.+.+.++..+
T Consensus 311 ddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 311 DMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred cHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 99999999988762111123579999988 88999999999999887544
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=243.27 Aligned_cols=254 Identities=28% Similarity=0.390 Sum_probs=187.5
Q ss_pred EEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeE----EEecCCCCHHHHHHHHccCCC
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMT----FHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||||||+|.||+.||++|++.+ ..+++++|+.........++..... .+++. ++.+|++|.+.+..+++..++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~--~~~v~~~~~~vigDvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFP--DPKVRFEIVPVIGDVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhccc--ccCcccccCceeecccCHHHHHHHHhhcCC
Confidence 7999999999999999999998 6799999987776666555543222 22343 458999999999999998889
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||+||....+..+.+|.+.+++|+.|+.|++++|.+++++++|++||.-+ .+|.+.||.||..
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKA--------------v~PtnvmGatKrl 144 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKA--------------VNPTNVMGATKRL 144 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGC--------------SS--SHHHHHHHH
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccc--------------CCCCcHHHHHHHH
Confidence 99999999988877888999999999999999999999999999999999864 4678999999999
Q ss_pred HHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 160 IEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 160 ~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
+|.++..+.... .+..++++|+|||.|.. .+++| |..|+..|.+.++. +.+..|-|
T Consensus 145 aE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~------------GSVip~F~~Qi~~g~PlTvT---------~p~mtRff 203 (293)
T PF02719_consen 145 AEKLVQAANQYSGNSDTKFSSVRFGNVLGSR------------GSVIPLFKKQIKNGGPLTVT---------DPDMTRFF 203 (293)
T ss_dssp HHHHHHHHCCTSSSS--EEEEEEE-EETTGT------------TSCHHHHHHHHHTTSSEEEC---------ETT-EEEE
T ss_pred HHHHHHHHhhhCCCCCcEEEEEEecceecCC------------CcHHHHHHHHHHcCCcceeC---------CCCcEEEE
Confidence 999999987764 36899999999999953 24777 66788888644443 57889999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC------CCCcccCCCCCCC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK------KIPLVKSGRRPGD 299 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~------~~~~~~~~~~~~~ 299 (347)
+.+++.++.++.++.. ...+++|.+.-|+++++.|+++.+.+..|. ++++.+...++++
T Consensus 204 mti~EAv~Lvl~a~~~----~~~geifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~GlRpGE 268 (293)
T PF02719_consen 204 MTIEEAVQLVLQAAAL----AKGGEIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTGLRPGE 268 (293)
T ss_dssp E-HHHHHHHHHHHHHH------TTEEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE----TT-
T ss_pred ecHHHHHHHHHHHHhh----CCCCcEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcCCCCCc
Confidence 9999999999999987 456799999888999999999999999984 3455565556554
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=249.00 Aligned_cols=257 Identities=25% Similarity=0.367 Sum_probs=220.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+||||||+|-||+.+|+++++.+ -+++.++|+..+......++....+ ..++.++.+|++|.+.+..+++++++|
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhcCCCc
Confidence 5899999999999999999999987 4677889988877776666665433 467889999999999999999988899
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|+|+||....+..+.+|.+.+++|+.||.|++++|.+++++++|.+||.-+ .+|.|.||.+|..+
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKA--------------V~PtNvmGaTKr~a 393 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA--------------VNPTNVMGATKRLA 393 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcc--------------cCCchHhhHHHHHH
Confidence 9999999998888999999999999999999999999999999999999753 57889999999999
Q ss_pred HHHHHHHhhhcC--CceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 161 EEICRDVHRSDS--EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 161 e~~~~~~~~~~~--~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
|+++.++..... +..++++|+|||.|.. .+++| +.+|+..|.+.++. +++..|-|+
T Consensus 394 E~~~~a~~~~~~~~~T~f~~VRFGNVlGSr------------GSViPlFk~QI~~GgplTvT---------dp~mtRyfM 452 (588)
T COG1086 394 EKLFQAANRNVSGTGTRFCVVRFGNVLGSR------------GSVIPLFKKQIAEGGPLTVT---------DPDMTRFFM 452 (588)
T ss_pred HHHHHHHhhccCCCCcEEEEEEecceecCC------------CCCHHHHHHHHHcCCCcccc---------CCCceeEEE
Confidence 999999877543 4899999999999963 34777 55678888765555 788999999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhC----CCCCcccCCCCCCC
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG----KKIPLVKSGRRPGD 299 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g----~~~~~~~~~~~~~~ 299 (347)
.++|.++.++.+... ..+|++|-+.-|+++++.|+++.+-+..| ..+++....-++++
T Consensus 453 TI~EAv~LVlqA~a~----~~gGeifvldMGepvkI~dLAk~mi~l~g~~~~~dI~I~~~GlRpGE 514 (588)
T COG1086 453 TIPEAVQLVLQAGAI----AKGGEIFVLDMGEPVKIIDLAKAMIELAGQTPPGDIAIKIIGLRPGE 514 (588)
T ss_pred EHHHHHHHHHHHHhh----cCCCcEEEEcCCCCeEHHHHHHHHHHHhCCCCCCCCCeEEEecCCch
Confidence 999999999998886 56789999998999999999999999998 23455555555544
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=238.93 Aligned_cols=241 Identities=22% Similarity=0.224 Sum_probs=184.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH--HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI--AVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+|+|||||||||++++++|+++||+|+++.|+...... ....... ..++++++.+|++|.+++.+++++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK----ELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh----hcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 4799999999999999999999999999999987653211 0111111 1246889999999999999999853
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhH
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK 157 (347)
++|+||||++.... .....+++|+.++.+++++|++.++++||++||.++|+ |...|..+|
T Consensus 136 ~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~--------------p~~~~~~sK 196 (390)
T PLN02657 136 PVDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK--------------PLLEFQRAK 196 (390)
T ss_pred CCcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC--------------cchHHHHHH
Confidence 49999999885321 12345678999999999999999999999999998752 345688999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceee-ee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR-DY 236 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 236 (347)
..+|..++. .. .+++++++||+.+||+ +...+..+..|+ .+.++| +|+..+ ++
T Consensus 197 ~~~E~~l~~--~~-~gl~~tIlRp~~~~~~---------------~~~~~~~~~~g~--~~~~~G------dG~~~~~~~ 250 (390)
T PLN02657 197 LKFEAELQA--LD-SDFTYSIVRPTAFFKS---------------LGGQVEIVKDGG--PYVMFG------DGKLCACKP 250 (390)
T ss_pred HHHHHHHHh--cc-CCCCEEEEccHHHhcc---------------cHHHHHhhccCC--ceEEec------CCcccccCc
Confidence 999998875 22 4899999999999974 222334444444 344556 566544 68
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC-CcccHHHHHHHHHHHhCCCCCcccCC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTG-KGTSVLEMVAAFEKASGKKIPLVKSG 294 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~-~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (347)
||++|+|+++..++.. +...+++||++++ +.+|++|+++.+++.+|.++.+...|
T Consensus 251 I~v~DlA~~i~~~~~~---~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp 306 (390)
T PLN02657 251 ISEADLASFIADCVLD---ESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVP 306 (390)
T ss_pred eeHHHHHHHHHHHHhC---ccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcC
Confidence 9999999999999876 3345699999875 68999999999999999876655444
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=211.83 Aligned_cols=281 Identities=21% Similarity=0.219 Sum_probs=195.2
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIH 84 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (347)
|+|||||||||++|+.+|.+.||+|+++.|++++..... ...+. ..+.+....+. ++|+|||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~----------~~~v~-------~~~~~~~~~~~-~~DavIN 62 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL----------HPNVT-------LWEGLADALTL-GIDAVIN 62 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc----------Ccccc-------ccchhhhcccC-CCCEEEE
Confidence 689999999999999999999999999999988764321 11111 12333444443 5999999
Q ss_pred ccccccCCc--cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 85 FAGLKAVGE--SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 85 ~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+||..-... +.+.-+.+.+.-+..|..|.++..+. +.+.+|..|.++-||...+..++|+.+... .--+.--..=
T Consensus 63 LAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~-~Fla~lc~~W 141 (297)
T COG1090 63 LAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGD-DFLAQLCQDW 141 (297)
T ss_pred CCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCC-ChHHHHHHHH
Confidence 999654432 33444668888999999999987754 466888888899999999999999854321 1112222222
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|+...... ..+.+++.+|.|.|.||.. +....+.+..+..+.| ++++|+|++.|||++
T Consensus 142 E~~a~~a~--~~gtRvvllRtGvVLs~~G--------GaL~~m~~~fk~glGG------------~~GsGrQ~~SWIhie 199 (297)
T COG1090 142 EEEALQAQ--QLGTRVVLLRTGVVLSPDG--------GALGKMLPLFKLGLGG------------KLGSGRQWFSWIHIE 199 (297)
T ss_pred HHHHhhhh--hcCceEEEEEEEEEecCCC--------cchhhhcchhhhccCC------------ccCCCCceeeeeeHH
Confidence 33333221 2388999999999999741 2222333333333322 334899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC----CCCCchhhccC-----hHHHH
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR----RPGDAEIVYAS-----TEKAE 311 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~d-----~~k~~ 311 (347)
|+++++.+++++ ....+.||++++.|++.+++.+.+.++++++..+..... .-++.....++ ..|+
T Consensus 200 D~v~~I~fll~~----~~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl- 274 (297)
T COG1090 200 DLVNAILFLLEN----EQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKL- 274 (297)
T ss_pred HHHHHHHHHHhC----cCCCCcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHH-
Confidence 999999999998 234489999999999999999999999997654322110 11222222333 4455
Q ss_pred HhcCCcccc-cHHHHHHHHHH
Q 040584 312 RELNWKAKY-GIDEMCRDQWN 331 (347)
Q Consensus 312 ~~lg~~p~~-~~~~~i~~~~~ 331 (347)
...||+++| ++++++.+.+.
T Consensus 275 ~~aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 275 EAAGFQFQYPDLEEALADILK 295 (297)
T ss_pred HHCCCeeecCCHHHHHHHHHh
Confidence 345999998 99999988764
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=247.91 Aligned_cols=263 Identities=17% Similarity=0.184 Sum_probs=191.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|++.|.++|++|... .+|++|.+.+...+...++|+
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~----------------------------~~~l~d~~~v~~~i~~~~pd~ 431 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG----------------------------KGRLEDRSSLLADIRNVKPTH 431 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCCCeEEee----------------------------ccccccHHHHHHHHHhhCCCE
Confidence 5799999999999999999999999988421 135778888888887778999
Q ss_pred EEEcccccc---CCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC------CCCCCCCCCCCC-CCC
Q 040584 82 VIHFAGLKA---VGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP------KVVPCTEEFPLQ-AMN 151 (347)
Q Consensus 82 vih~a~~~~---~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~------~~~~~~e~~~~~-~~~ 151 (347)
|||||+... ...++.++...+++|+.++.+++++|++.++ ++|++||.++|+.. ...+++|+++.. +.+
T Consensus 432 Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~ 510 (668)
T PLN02260 432 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGS 510 (668)
T ss_pred EEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC-eEEEEcccceecCCcccccccCCCCCcCCCCCCCCC
Confidence 999999764 2234567888999999999999999999998 57888999998642 134778876554 458
Q ss_pred chhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCc
Q 040584 152 PYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
.|+.||.++|.+++.+. +..++|+..+||+...+ ..+++ ..+..... .+.+ +.
T Consensus 511 ~Yg~sK~~~E~~~~~~~------~~~~~r~~~~~~~~~~~--------~~nfv---~~~~~~~~-~~~v-------p~-- 563 (668)
T PLN02260 511 FYSKTKAMVEELLREYD------NVCTLRVRMPISSDLSN--------PRNFI---TKISRYNK-VVNI-------PN-- 563 (668)
T ss_pred hhhHHHHHHHHHHHhhh------hheEEEEEEecccCCCC--------ccHHH---HHHhccce-eecc-------CC--
Confidence 99999999999998763 34677888888743110 11233 33332221 2221 11
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhC--CC-CCccc--CC--CCCCCchhhc
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG--KK-IPLVK--SG--RRPGDAEIVY 304 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g--~~-~~~~~--~~--~~~~~~~~~~ 304 (347)
...+++|++.+++.+++. ..+++||+++++.+|+.|+++.+++.++ .. .++.. .+ .....+.. .
T Consensus 564 ---~~~~~~~~~~~~~~l~~~-----~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~ 634 (668)
T PLN02260 564 ---SMTVLDELLPISIEMAKR-----NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-E 634 (668)
T ss_pred ---CceehhhHHHHHHHHHHh-----CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-c
Confidence 356788899888887764 1248999999999999999999999884 22 11111 11 11122333 7
Q ss_pred cChHHHHHhcCCcccccHHHHHHHHHH
Q 040584 305 ASTEKAERELNWKAKYGIDEMCRDQWN 331 (347)
Q Consensus 305 ~d~~k~~~~lg~~p~~~~~~~i~~~~~ 331 (347)
+|++|+++.+|. +. +|++++++++.
T Consensus 635 l~~~k~~~~~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 635 MDASKLKKEFPE-LL-SIKESLIKYVF 659 (668)
T ss_pred ccHHHHHHhCcc-cc-chHHHHHHHHh
Confidence 999999998998 65 89999998874
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=206.64 Aligned_cols=307 Identities=21% Similarity=0.287 Sum_probs=239.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhc----cCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAG----YQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|..||||-||.-|++|++.|+.+||+|.++.|.++. +.. .+.++.. ..+.......+|++|...+.+++...
T Consensus 29 kvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~---RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 29 KVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTA---RIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred eEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchh---hhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 468999999999999999999999999987665543 322 2333322 12456778899999999999999988
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC---eEEEeccccccCCCCCCCCCCCCCCCCCCchh
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK---NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYG 154 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~---~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~ 154 (347)
.++-|+|+|+.....-+.+.++..-++...|+.+|+++.+.++.. ||...||...||.....|.+|.+|.-|.++|+
T Consensus 106 kPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPRSPYa 185 (376)
T KOG1372|consen 106 KPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPRSPYA 185 (376)
T ss_pred CchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCCChhH
Confidence 999999999998877788888888899999999999999988632 89999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 155 RSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
.+|..+-.++-.|...+ ++-.|. |.+|- |+++- |++. ..+.+..-+.++..|+.+.+.+ | +-+..
T Consensus 186 ~aKmy~~WivvNyREAY-nmfAcN---GILFN-HESPRRGenF--VTRKItRsvakI~~gqqe~~~L-G------NL~a~ 251 (376)
T KOG1372|consen 186 AAKMYGYWIVVNYREAY-NMFACN---GILFN-HESPRRGENF--VTRKITRSVAKISLGQQEKIEL-G------NLSAL 251 (376)
T ss_pred HhhhhheEEEEEhHHhh-cceeec---cEeec-CCCCccccch--hhHHHHHHHHHhhhcceeeEEe-c------chhhh
Confidence 99988887776666555 443333 22332 22221 2222 2344555566676776665553 3 67889
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcc------------------c--C
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV------------------K--S 293 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~------------------~--~ 293 (347)
|||-|..|.++|++.++++..+ ..|.+..++..|++|+++.....+|....+. . .
T Consensus 252 RDWGhA~dYVEAMW~mLQ~d~P-----dDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~k 326 (376)
T KOG1372|consen 252 RDWGHAGDYVEAMWLMLQQDSP-----DDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPK 326 (376)
T ss_pred cccchhHHHHHHHHHHHhcCCC-----CceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEeccc
Confidence 9999999999999999988322 5688899999999999999988888443221 0 1
Q ss_pred CCCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHH
Q 040584 294 GRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWN 331 (347)
Q Consensus 294 ~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~ 331 (347)
=++|.+......|.+|+++.|||+|+.++++.+++++.
T Consensus 327 YyRPtEVd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~ 364 (376)
T KOG1372|consen 327 YYRPTEVDTLQGDASKAKKTLGWKPKVTFPELVKEMVA 364 (376)
T ss_pred ccCcchhhhhcCChHHHHHhhCCCCccCHHHHHHHHHH
Confidence 13556667778999999999999999999999999985
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=226.48 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=184.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhH---HHHHHHHHhhcc---CC-CCeEEEecCCCCH------H
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASE---IAVAKVKELAGY---QG-NNMTFHKLDLRDK------A 68 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~---~~~~~~~~~~~~---~~-~~~~~~~~Dl~d~------~ 68 (347)
+|+|||||||||++|+++|+++| ++|+++.|+.+... ...+.+...... .. .++.++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999998 67999998766332 111222211100 01 4788999998753 4
Q ss_pred HHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCC--
Q 040584 69 ALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP-- 146 (347)
Q Consensus 69 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~-- 146 (347)
.+..+.+ ++|+|||+|+..... ......+++|+.++.+++++|.+.++++||++||..+|+.....+..|+.+
T Consensus 81 ~~~~~~~--~~d~vih~a~~~~~~---~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~ 155 (367)
T TIGR01746 81 EWERLAE--NVDTIVHNGALVNWV---YPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIV 155 (367)
T ss_pred HHHHHHh--hCCEEEeCCcEeccC---CcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccc
Confidence 5666666 699999999975422 233456789999999999999998888899999999997644333333332
Q ss_pred ---CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 147 ---LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ---~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
..+.+.|+.+|..+|.+++.+... +++++++||+.+||+...+.... ...+..++....... .++
T Consensus 156 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~--g~~~~i~Rpg~v~G~~~~g~~~~----~~~~~~~~~~~~~~~--~~p---- 223 (367)
T TIGR01746 156 TPPPGLAGGYAQSKWVAELLVREASDR--GLPVTIVRPGRILGNSYTGAINS----SDILWRMVKGCLALG--AYP---- 223 (367)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHhc--CCCEEEECCCceeecCCCCCCCc----hhHHHHHHHHHHHhC--CCC----
Confidence 223568999999999999887654 89999999999999743222110 111222333322211 111
Q ss_pred cCCCCCCc-eeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC
Q 040584 224 DYSTKDGT-VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP 289 (347)
Q Consensus 224 ~~~~~~~~-~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~ 289 (347)
... ..++++|++|+++++..++..... ...+++||+++++++++.|+++.+.+ +|.+.+
T Consensus 224 -----~~~~~~~~~~~vddva~ai~~~~~~~~~-~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 224 -----DSPELTEDLTPVDYVARAIVALSSQPAA-SAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred -----CCCccccCcccHHHHHHHHHHHHhCCCc-ccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 222 367899999999999998876211 02268999999999999999999998 786654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=223.54 Aligned_cols=264 Identities=15% Similarity=0.149 Sum_probs=183.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC---eEEEEeCCCchhHH---HHHH---------HHHhhcc-----CCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY---KTVVVDNLDNASEI---AVAK---------VKELAGY-----QGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~---~v~~~~r~~~~~~~---~~~~---------~~~~~~~-----~~~~~~~~~ 61 (347)
+|+|||||||||||++|++.|++.+. +|+++.|....... .... +.+..+. ...++.++.
T Consensus 119 ~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~ 198 (605)
T PLN02503 119 GKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVV 198 (605)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEE
Confidence 47999999999999999999998764 57888886543211 1111 1111111 135788999
Q ss_pred cCCCCH------HHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccC
Q 040584 62 LDLRDK------AALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~------~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg 134 (347)
+|++++ +..+.+.+ ++|+|||+|+.... ..++...+++|+.++.+++++|++.+ +++|||+||++|||
T Consensus 199 GDl~d~~LGLs~~~~~~L~~--~vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG 273 (605)
T PLN02503 199 GNVCESNLGLEPDLADEIAK--EVDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNG 273 (605)
T ss_pred eeCCCcccCCCHHHHHHHHh--cCCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeec
Confidence 999986 35556666 59999999997653 24567788999999999999998874 77999999999998
Q ss_pred CCCCC----CCC--C--------------------------------C---C-----------------CCCCCCchhhh
Q 040584 135 WPKVV----PCT--E--------------------------------E---F-----------------PLQAMNPYGRS 156 (347)
Q Consensus 135 ~~~~~----~~~--e--------------------------------~---~-----------------~~~~~~~Y~~s 156 (347)
...+. ++. + . . -....+.|..+
T Consensus 274 ~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~T 353 (605)
T PLN02503 274 QRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFT 353 (605)
T ss_pred CCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHH
Confidence 75321 221 0 0 0 01223789999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccC----CCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVG----AHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
|..+|.+++++. .+++++++||+.|.+ |.|++. ++. ....+.+.....|.. -.++| +++.
T Consensus 354 K~lAE~lV~~~~---~~LPv~IvRPsiV~st~~eP~pGw~-d~~----~~~~p~~~~~g~G~l--r~~~~------~~~~ 417 (605)
T PLN02503 354 KAMGEMVINSMR---GDIPVVIIRPSVIESTWKDPFPGWM-EGN----RMMDPIVLYYGKGQL--TGFLA------DPNG 417 (605)
T ss_pred HHHHHHHHHHhc---CCCCEEEEcCCEecccccCCccccc-cCc----cccchhhhheeccce--eEEEe------CCCe
Confidence 999999998654 378999999999955 222221 111 112233322233322 12445 7899
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCC-CCCCeeEEccCC--CcccHHHHHHHHHHHhCC
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDP-KVGCEVYNLGTG--KGTSVLEMVAAFEKASGK 286 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~-~~~~~~~nv~~~--~~~s~~e~~~~i~~~~g~ 286 (347)
..|.|+||.++++++.++...... .....+||++++ +++++.|+.+.+.+.+..
T Consensus 418 ~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 418 VLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred eEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 999999999999999885431111 124689999988 899999999999987654
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=224.05 Aligned_cols=238 Identities=21% Similarity=0.256 Sum_probs=169.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+||||||+||||++|+++|+++||+|++++|.+... ...+++++.+|+.|.. +.+++. ++|+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-------------~~~~ve~v~~Dl~d~~-l~~al~--~~D~V 64 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-------------LDPRVDYVCASLRNPV-LQELAG--EADAV 64 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-------------ccCCceEEEccCCCHH-HHHHhc--CCCEE
Confidence 5899999999999999999999999999999864321 0236788999999985 777777 69999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+|+.... ....+|+.++.+++++|++.++ ++||+||. ||.+ ..|. .+|.
T Consensus 65 IHLAa~~~~--------~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~~--------------~~~~----~aE~ 115 (699)
T PRK12320 65 IHLAPVDTS--------APGGVGITGLAHVANAAARAGA-RLLFVSQA--AGRP--------------ELYR----QAET 115 (699)
T ss_pred EEcCccCcc--------chhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCCC--------------cccc----HHHH
Confidence 999985321 1125799999999999999987 79999986 3321 0122 4677
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
++.. .+++++++|++++|||+.. .. ....+..++.+...+ ....+||++|+
T Consensus 116 ll~~-----~~~p~~ILR~~nVYGp~~~-----~~-~~r~I~~~l~~~~~~------------------~pI~vIyVdDv 166 (699)
T PRK12320 116 LVST-----GWAPSLVIRIAPPVGRQLD-----WM-VCRTVATLLRSKVSA------------------RPIRVLHLDDL 166 (699)
T ss_pred HHHh-----cCCCEEEEeCceecCCCCc-----cc-HhHHHHHHHHHHHcC------------------CceEEEEHHHH
Confidence 6653 2678999999999998321 10 011122233322221 12346999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccccH
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGI 322 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~ 322 (347)
+++++.+++. . . +++||+++++.+|+.|+++.+..... ... +...........|.+..+..++|.|+.+|
T Consensus 167 v~alv~al~~---~-~-~GiyNIG~~~~~Si~el~~~i~~~~p-~~~----~~~~~~~~~~~pdi~~a~~~~~w~~~~~~ 236 (699)
T PRK12320 167 VRFLVLALNT---D-R-NGVVDLATPDTTNVVTAWRLLRSVDP-HLR----TRRVRSWEQLIPEVDIAAVQEDWNFEFGW 236 (699)
T ss_pred HHHHHHHHhC---C-C-CCEEEEeCCCeeEHHHHHHHHHHhCC-Ccc----ccccccHHHhCCCCchhhhhcCCCCcchH
Confidence 9999988875 1 2 35999999999999999998876622 111 11233345566778888888899999877
Q ss_pred HH
Q 040584 323 DE 324 (347)
Q Consensus 323 ~~ 324 (347)
+.
T Consensus 237 ~~ 238 (699)
T PRK12320 237 QA 238 (699)
T ss_pred HH
Confidence 54
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=205.96 Aligned_cols=221 Identities=20% Similarity=0.201 Sum_probs=130.9
Q ss_pred EEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHH-HHhh------c---cCCCCeEEEecCCCCH------H
Q 040584 7 VIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKV-KELA------G---YQGNNMTFHKLDLRDK------A 68 (347)
Q Consensus 7 ItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~-~~~~------~---~~~~~~~~~~~Dl~d~------~ 68 (347)
|||||||||++|+++|++.+. +|+++.|..+..... +.+ ..+. . ....+++++.+|++++ +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~-~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSAL-ERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHH-HHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccch-hhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 799999999999999999976 899999987543222 222 1111 0 1257999999999874 4
Q ss_pred HHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCC------CC
Q 040584 69 ALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVP------CT 142 (347)
Q Consensus 69 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~------~~ 142 (347)
.+..+.+ .+|+||||||...+.. .....+++|+.|++++++.|.+.+.++|+|+||+.+.+...... ..
T Consensus 80 ~~~~L~~--~v~~IiH~Aa~v~~~~---~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~ 154 (249)
T PF07993_consen 80 DYQELAE--EVDVIIHCAASVNFNA---PYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEE 154 (249)
T ss_dssp HHHHHHH--H--EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH
T ss_pred Hhhcccc--ccceeeecchhhhhcc---cchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccc
Confidence 6677767 5999999999765432 44557899999999999999977666999999966655443221 11
Q ss_pred C---CCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHH-HHHcCCCCce
Q 040584 143 E---EFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVT-QVAVGRRPAL 218 (347)
Q Consensus 143 e---~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 218 (347)
+ +......+.|..||+.+|++++.++++. +++++++||+.|+|....|.... .+.+..++. .+..+..+.
T Consensus 155 ~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~-g~p~~I~Rp~~i~g~~~~G~~~~----~~~~~~~~~~~~~~~~~p~- 228 (249)
T PF07993_consen 155 EDDLDPPQGFPNGYEQSKWVAERLLREAAQRH-GLPVTIYRPGIIVGDSRTGWWNS----DDFFPYLLRSCIALGAFPD- 228 (249)
T ss_dssp --EEE--TTSEE-HHHHHHHHHHHHHHHHHHH----EEEEEE-EEE-SSSSS---T----TBHHHHHHHHHHHH-EEES-
T ss_pred cccchhhccCCccHHHHHHHHHHHHHHHHhcC-CceEEEEecCcccccCCCceeec----cchHHHHHHHHHHcCCccc-
Confidence 1 1234456799999999999999998764 89999999999999433332111 111333333 333433211
Q ss_pred EEecccCCCCCCceeeeeeeHHHHHHHH
Q 040584 219 TVFGTDYSTKDGTVVRDYIHVVDLADGH 246 (347)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~i~v~D~a~a~ 246 (347)
..+ +.+...++++||.+|+++
T Consensus 229 -~~~------~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 229 -LPG------DPDARLDLVPVDYVARAI 249 (249)
T ss_dssp --SB---------TT--EEEHHHHHHHH
T ss_pred -ccC------CCCceEeEECHHHHHhhC
Confidence 222 345569999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=199.83 Aligned_cols=245 Identities=18% Similarity=0.155 Sum_probs=173.0
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
|+|++|||||+|+||++++++|+++|+.|+++.|+........+. ...++.++.+|++|.+++.+++++
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR-------YGDRLWVLQLDVTDSAAVRAVVDRAFAA 73 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-------ccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998875433222111 134678899999999998887653
Q ss_pred -CCCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+|||+||....... .+.+...+++|+.++.++++++ ++.+.++||++||..... +.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~ 142 (276)
T PRK06482 74 LGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI-----------AY 142 (276)
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc-----------CC
Confidence 258999999997654332 2234567889999999999986 555677999999976531 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccc---cCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNP---VGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+.+.|+.+|.+.|.+++.++++. .+++++++|||.+ ||+..... .............+.+..... .+
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~---- 215 (276)
T PRK06482 143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRG-APLDAYDDTPVGDLRRALADG--SF---- 215 (276)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCccccccc-CCCccccchhhHHHHHHHhhc--cC----
Confidence 356789999999999999887663 3899999999988 55421100 000000111111222222111 01
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG 285 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g 285 (347)
.-+.+++|++++++.++... ..+..||+++++..++.|+++.+.+.++
T Consensus 216 -----------~~~~d~~~~~~a~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 216 -----------AIPGDPQKMVQAMIASADQT----PAPRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred -----------CCCCCHHHHHHHHHHHHcCC----CCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 11357899999999998752 2346799999998999998888877765
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=203.82 Aligned_cols=254 Identities=16% Similarity=0.144 Sum_probs=177.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----CC-
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----TK- 78 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~- 78 (347)
+|+||||||++|++++++|+++|++|+++.|++++.. ..+++.+.+|+.|.+++.++++. .+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~-------------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~ 67 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA-------------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPE 67 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc-------------CCCCccccccCCCHHHHHHHHhcccCcCCc
Confidence 5899999999999999999999999999999876432 13566778999999999999941 15
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHH
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
+|.|+|+++... . ......+++++|++.|++|||++||..++.. +..+.
T Consensus 68 ~d~v~~~~~~~~--------~-----~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~------------------~~~~~ 116 (285)
T TIGR03649 68 ISAVYLVAPPIP--------D-----LAPPMIKFIDFARSKGVRRFVLLSASIIEKG------------------GPAMG 116 (285)
T ss_pred eeEEEEeCCCCC--------C-----hhHHHHHHHHHHHHcCCCEEEEeeccccCCC------------------CchHH
Confidence 899999986321 0 1234568999999999999999999765310 01233
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
..|..+++. .+++++++||+.+|+.... .+ .+..+..+. .+. .+ .++..++||+
T Consensus 117 ~~~~~l~~~----~gi~~tilRp~~f~~~~~~-----------~~--~~~~~~~~~--~~~-~~------~g~~~~~~v~ 170 (285)
T TIGR03649 117 QVHAHLDSL----GGVEYTVLRPTWFMENFSE-----------EF--HVEAIRKEN--KIY-SA------TGDGKIPFVS 170 (285)
T ss_pred HHHHHHHhc----cCCCEEEEeccHHhhhhcc-----------cc--cccccccCC--eEE-ec------CCCCccCccc
Confidence 445544431 3899999999988864100 00 011111111 121 22 4677889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC--------CCchh-------h
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP--------GDAEI-------V 303 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~~~-------~ 303 (347)
++|+|+++..++.. +...+++|++++++.+|+.|+++.+.+.+|++.+....+... +.+.. .
T Consensus 171 ~~Dva~~~~~~l~~---~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 247 (285)
T TIGR03649 171 ADDIARVAYRALTD---KVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASL 247 (285)
T ss_pred HHHHHHHHHHHhcC---CCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999886 334568899999999999999999999999886654332110 00000 0
Q ss_pred ---------ccChHHHHHhcCCcccccHHHHHHHHHH
Q 040584 304 ---------YASTEKAERELNWKAKYGIDEMCRDQWN 331 (347)
Q Consensus 304 ---------~~d~~k~~~~lg~~p~~~~~~~i~~~~~ 331 (347)
-..++.+++.+|.+|+ +|++.+++..+
T Consensus 248 ~~~~~~g~~~~~~~~~~~~~G~~p~-~~~~~~~~~~~ 283 (285)
T TIGR03649 248 DTAVKNGAEVRLNDVVKAVTGSKPR-GFRDFAESNKA 283 (285)
T ss_pred HHHHhCCccccccchHHHHhCcCCc-cHHHHHHHhhh
Confidence 0125566677898888 89888877643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=191.33 Aligned_cols=236 Identities=14% Similarity=0.131 Sum_probs=165.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++|||||+|+||+++++.|+++|++|+++.|++.......+.+... +.++.++.+|++|.+++.+++++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA----GGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc----CceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999876655555544432 346778999999999998877642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhH----HHHHHHHH-HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTG----TITLLEVM-AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~----~~~l~~~~-~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|+||||||...... ..+.++..+++|+.+ +..+++++ +..+.++||++||...+. +.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~-----------~~ 151 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE-----------AS 151 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC-----------CC
Confidence 4899999999754322 223345677889999 55566666 666678999999976542 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
.+...|+.+|.+.+.+++.++.+. .+++++++||+.+++|..... ..............+.++..
T Consensus 152 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 219 (262)
T PRK13394 152 PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVML------------ 219 (262)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHh------------
Confidence 345689999999999999887764 479999999999998731100 00000000000011111111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.+...++|++++|++++++.++.... ....++.|+++++.
T Consensus 220 ----~~~~~~~~~~~~dva~a~~~l~~~~~-~~~~g~~~~~~~g~ 259 (262)
T PRK13394 220 ----GKTVDGVFTTVEDVAQTVLFLSSFPS-AALTGQSFVVSHGW 259 (262)
T ss_pred ----cCCCCCCCCCHHHHHHHHHHHcCccc-cCCcCCEEeeCCce
Confidence 23345679999999999999987632 23457889987764
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=192.02 Aligned_cols=180 Identities=22% Similarity=0.260 Sum_probs=140.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhc-------cCCCCeEEEecCCC------CHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAG-------YQGNNMTFHKLDLR------DKA 68 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Dl~------d~~ 68 (347)
++||+||||||+|++|+..|+.+- ..|+|+.|-.+. +...+.+.+... ....+++.+.+|++ +..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~-E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSD-EAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 589999999999999999999974 599999886653 222333332222 45679999999998 466
Q ss_pred HHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCC----CCC
Q 040584 69 ALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPC----TEE 144 (347)
Q Consensus 69 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~----~e~ 144 (347)
.++.+.+ .+|.|||+|+...+ .....++...||.|+..+++.|...+.|.+.|+||.+|+........ +|+
T Consensus 80 ~~~~La~--~vD~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~ 154 (382)
T COG3320 80 TWQELAE--NVDLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEI 154 (382)
T ss_pred HHHHHhh--hcceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccc
Confidence 7888888 69999999997653 23345677889999999999999988989999999999865433222 221
Q ss_pred CC-----CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCC
Q 040584 145 FP-----LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPS 190 (347)
Q Consensus 145 ~~-----~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~ 190 (347)
.+ ..+.++|+.||+.+|.++++.... |+++++.|||.|-|+..+
T Consensus 155 ~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r--GLpv~I~Rpg~I~gds~t 203 (382)
T COG3320 155 SPTRNVGQGLAGGYGRSKWVAEKLVREAGDR--GLPVTIFRPGYITGDSRT 203 (382)
T ss_pred cccccccCccCCCcchhHHHHHHHHHHHhhc--CCCeEEEecCeeeccCcc
Confidence 22 346689999999999999988765 999999999999997543
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=183.89 Aligned_cols=228 Identities=19% Similarity=0.199 Sum_probs=159.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++|+||||+|+||++++++|+++|++|++++|+... .+...+.+... ....+.++.+|++|.+++.++++..
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL---RPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh---cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999886433 22222222221 1235778999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.+..++++|+.++.++++++... ..+.++.+++... ..+..+
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 152 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA-----------ERPLKG 152 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh-----------cCCCCC
Confidence 5899999999643222 22345668889999999999998642 2236666665332 235667
Q ss_pred CCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
...|+.+|.++|.+++.++.+. .+++++++||+.++||... . .+..........+.+ +.
T Consensus 153 ~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~------~----~~~~~~~~~~~~~~~-~~--------- 212 (249)
T PRK09135 153 YPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDG------N----SFDEEARQAILARTP-LK--------- 212 (249)
T ss_pred chhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccc------c----cCCHHHHHHHHhcCC-cC---------
Confidence 7899999999999999988775 3699999999999998411 1 122222222221111 11
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.+.+++|+++++.+++.. .....+++||++++..++
T Consensus 213 ------~~~~~~d~a~~~~~~~~~--~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 213 ------RIGTPEDIAEAVRFLLAD--ASFITGQILAVDGGRSLT 248 (249)
T ss_pred ------CCcCHHHHHHHHHHHcCc--cccccCcEEEECCCeecc
Confidence 123589999999766654 123577999999887654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=184.61 Aligned_cols=228 Identities=20% Similarity=0.234 Sum_probs=157.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHH-ccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVF-AGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~-~~~~~ 79 (347)
+|+|+||||||+||++++++|+++||+|+++.|+.++..... . ...+++++.+|+.| .+.+.+.+ . ++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~-----~~~~~~~~~~Dl~d~~~~l~~~~~~--~~ 86 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL---P-----QDPSLQIVRADVTEGSDKLVEAIGD--DS 86 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc---c-----cCCceEEEEeeCCCCHHHHHHHhhc--CC
Confidence 479999999999999999999999999999988765432111 0 02368889999998 46677776 4 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC-CCCCCCchhhhHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF-PLQAMNPYGRSKL 158 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~-~~~~~~~Y~~sK~ 158 (347)
|+|||++|.... ..+...+++|..++.++++++++.+++|||++||..+||.....+..+.. ..++...|..+|.
T Consensus 87 d~vi~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~ 162 (251)
T PLN00141 87 DAVICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKL 162 (251)
T ss_pred CEEEECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHH
Confidence 999999885321 12233457899999999999999889999999999999754332221111 1112233445688
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
.+|++++. .+++++++||+.+++... . +. +.+.. ......++|+
T Consensus 163 ~~e~~l~~-----~gi~~~iirpg~~~~~~~-------~---------------~~---~~~~~------~~~~~~~~i~ 206 (251)
T PLN00141 163 QAEKYIRK-----SGINYTIVRPGGLTNDPP-------T---------------GN---IVMEP------EDTLYEGSIS 206 (251)
T ss_pred HHHHHHHh-----cCCcEEEEECCCccCCCC-------C---------------ce---EEECC------CCccccCccc
Confidence 88877653 289999999999997521 0 00 00000 1111235799
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCC---CcccHHHHHHHHHH
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTG---KGTSVLEMVAAFEK 282 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~---~~~s~~e~~~~i~~ 282 (347)
.+|+|+++..++.. +...+.++.+.+. ...++++++..+++
T Consensus 207 ~~dvA~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 207 RDQVAEVAVEALLC---PESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred HHHHHHHHHHHhcC---hhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 99999999999987 3344466777652 24778888887764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=221.70 Aligned_cols=259 Identities=17% Similarity=0.173 Sum_probs=182.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC----CeEEEEeCCCchhHHHHHHHHHhh-------ccCCCCeEEEecCCCC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG----YKTVVVDNLDNASEIAVAKVKELA-------GYQGNNMTFHKLDLRD----- 66 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g----~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Dl~d----- 66 (347)
++|+|||||||||+++++.|++++ +.|+++.|........ +.+.... .....++.++.+|+.+
T Consensus 972 ~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 972 ITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL-ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred ceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH-HHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 689999999999999999999987 8899999876543322 2221110 0112378899999974
Q ss_pred -HHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCC--------
Q 040584 67 -KAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPK-------- 137 (347)
Q Consensus 67 -~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~-------- 137 (347)
.+.+.++.. ++|+|||+|+..... .........|+.++.+++++|++.++++|+|+||..+|+...
T Consensus 1051 ~~~~~~~l~~--~~d~iiH~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~ 1125 (1389)
T TIGR03443 1051 SDEKWSDLTN--EVDVIIHNGALVHWV---YPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDEL 1125 (1389)
T ss_pred CHHHHHHHHh--cCCEEEECCcEecCc---cCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhh
Confidence 456666666 699999999976432 222334467999999999999998888999999999996421
Q ss_pred ----CCCCCCCCC-----CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HH
Q 040584 138 ----VVPCTEEFP-----LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FV 207 (347)
Q Consensus 138 ----~~~~~e~~~-----~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~ 207 (347)
...+.|+.+ ..+.+.|+.||+.+|.++..+.+. +++++++||++|||+...+.. ....++. ++
T Consensus 1126 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~--g~~~~i~Rpg~v~G~~~~g~~-----~~~~~~~~~~ 1198 (1389)
T TIGR03443 1126 VQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR--GLRGCIVRPGYVTGDSKTGAT-----NTDDFLLRML 1198 (1389)
T ss_pred hhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC--CCCEEEECCCccccCCCcCCC-----CchhHHHHHH
Confidence 112333322 224567999999999999887653 899999999999998543321 1122222 33
Q ss_pred HHHH-cCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC
Q 040584 208 TQVA-VGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK 286 (347)
Q Consensus 208 ~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~ 286 (347)
.... .+. ++ +....++|++|+|++++++.++..... ...+.+||++++..+++.++++.+.+. |.
T Consensus 1199 ~~~~~~~~---~p---------~~~~~~~~~~Vddva~ai~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~ 1264 (1389)
T TIGR03443 1199 KGCIQLGL---IP---------NINNTVNMVPVDHVARVVVAAALNPPK-ESELAVAHVTGHPRIRFNDFLGTLKTY-GY 1264 (1389)
T ss_pred HHHHHhCC---cC---------CCCCccccccHHHHHHHHHHHHhCCcc-cCCCCEEEeCCCCCCcHHHHHHHHHHh-CC
Confidence 2221 111 11 345568999999999999999876211 123468999988889999999999754 55
Q ss_pred CC
Q 040584 287 KI 288 (347)
Q Consensus 287 ~~ 288 (347)
+.
T Consensus 1265 ~~ 1266 (1389)
T TIGR03443 1265 DV 1266 (1389)
T ss_pred CC
Confidence 44
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=186.29 Aligned_cols=245 Identities=13% Similarity=0.091 Sum_probs=169.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++|+||||+|+||++++++|+++|++|++++|+........+.+ ...+..+.+|++|.+++..++++.
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-------GDRLLPLALDVTDRAAVFAAVETAVEH 74 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-------cCCeeEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998765443322211 236778899999999988776642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++..+++++ ++.+.+++|++||...+. +.
T Consensus 75 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~-----------~~ 143 (275)
T PRK08263 75 FGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGIS-----------AF 143 (275)
T ss_pred cCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcC-----------CC
Confidence 6899999999764332 23455678899999998887765 455677999999987763 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+++.+++.++.+. .+++++++|||.+..+........... .............
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~------------- 209 (275)
T PRK08263 144 PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATP-LDAYDTLREELAE------------- 209 (275)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCC-chhhhhHHHHHHH-------------
Confidence 345689999999999998887753 489999999998876532100000000 0001111111111
Q ss_pred CCCCCceeeee-eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHh
Q 040584 226 STKDGTVVRDY-IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKAS 284 (347)
Q Consensus 226 ~~~~~~~~~~~-i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~ 284 (347)
......+ ++++|++++++.+++. +...+..|+..+++.+++.++.+.+.+..
T Consensus 210 ----~~~~~~~~~~p~dva~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (275)
T PRK08263 210 ----QWSERSVDGDPEAAAEALLKLVDA---ENPPLRLFLGSGVLDLAKADYERRLATWE 262 (275)
T ss_pred ----HHHhccCCCCHHHHHHHHHHHHcC---CCCCeEEEeCchHHHHHHHHHHHHHHHHH
Confidence 0112234 7899999999999987 23344555555556788999999888753
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=183.26 Aligned_cols=234 Identities=17% Similarity=0.113 Sum_probs=161.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++|+||||+|+||++++++|+++|++|++++|+..+.......+... +.++..+.+|++|.+++.++++..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA----GGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999876655444444332 357888999999999998887642
Q ss_pred CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|+|||+||........ +.....+++|+.++..+++ ++++.+.++||++||...+. +...
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~-----------~~~~ 149 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV-----------GSAG 149 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc-----------CCCC
Confidence 589999999965433222 2334567789999555544 45556678999999986652 2345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCC-CCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRG-IPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
.+.|+.+|.+.+.+++.++.+. .++.++++||+.+++|.....-..... ........+.....
T Consensus 150 ~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 215 (258)
T PRK12429 150 KAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLL-------------- 215 (258)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHh--------------
Confidence 6789999999999998876654 478999999999998742211000000 00000001111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.....+.+++++|+++++..++.... ....++.|+++++
T Consensus 216 --~~~~~~~~~~~~d~a~~~~~l~~~~~-~~~~g~~~~~~~g 254 (258)
T PRK12429 216 --PLVPQKRFTTVEEIADYALFLASFAA-KGVTGQAWVVDGG 254 (258)
T ss_pred --ccCCccccCCHHHHHHHHHHHcCccc-cCccCCeEEeCCC
Confidence 11223569999999999998887522 2345788998765
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=183.44 Aligned_cols=228 Identities=18% Similarity=0.198 Sum_probs=163.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+|+||||+|+||.++++.|+++|++|++++|+..+.......+... ...+.++.+|+.|.+++.+++++.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA----GGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999865544333333221 345888999999999999888642
Q ss_pred --CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|+|||+||..... ...+++...++.|+.++.++++++. +.+.++||++||...++ .+.
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~----------~~~ 150 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPR----------VGY 150 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhc----------cCC
Confidence 589999999876542 2334456688899999999988764 44567999999987651 123
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+++.+++.++.+. .+++++++||++++||..... . . ..+...+...
T Consensus 151 ~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~-----~--~--~~~~~~~~~~------------ 209 (251)
T PRK12826 151 PGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNL-----G--D--AQWAEAIAAA------------ 209 (251)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhc-----C--c--hHHHHHHHhc------------
Confidence 345689999999999998887653 489999999999999731100 0 0 0011111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+++++|+++++..++.... ....+++|++.+|.
T Consensus 210 -----~~~~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~~~~g~ 247 (251)
T PRK12826 210 -----IPLGRLGEPEDIAAAVLFLASDEA-RYITGQTLPVDGGA 247 (251)
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCccc-cCcCCcEEEECCCc
Confidence 011247899999999998876522 12467999997765
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=182.88 Aligned_cols=227 Identities=18% Similarity=0.138 Sum_probs=162.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH-HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA-VAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++|++.|+++|++|+++.|+....... ...+.. ...++.++.+|+.|.+++.+++++.
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEA----LGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh----cCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999998877665543221 222221 2356888999999999998887542
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++.+ ++.+.+++|++||...+. +.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~-----------~~ 150 (249)
T PRK12825 82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLP-----------GW 150 (249)
T ss_pred cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCC-----------CC
Confidence 5899999999654333 23344667889999999998876 455678999999988763 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++++. .+++++++||+.++|+... .......... .. ..
T Consensus 151 ~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~----------~~~~~~~~~~--~~--~~------- 209 (249)
T PRK12825 151 PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKE----------ATIEEAREAK--DA--ET------- 209 (249)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccc----------cccchhHHhh--hc--cC-------
Confidence 345689999999999998887763 4899999999999997311 0011111110 00 00
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+++.+|+++++.+++... .....+++|+++++..+
T Consensus 210 ------~~~~~~~~~dva~~~~~~~~~~-~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 210 ------PLGRSGTPEDIARAVAFLCSDA-SDYITGQVIEVTGGVDV 248 (249)
T ss_pred ------CCCCCcCHHHHHHHHHHHhCcc-ccCcCCCEEEeCCCEee
Confidence 1122889999999999998762 22457899999887543
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=183.88 Aligned_cols=246 Identities=19% Similarity=0.182 Sum_probs=173.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|++|+++.|+........+.+..... ..++.++.+|+.|.+++.+++++.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG--AGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC--CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999999876554433333332211 246788899999999888877642
Q ss_pred -CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||.... . ...+.+...+++|+.++..+++++.+ .+.++||++||...+. +.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~ 153 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN-----------TH 153 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC-----------CC
Confidence 58999999995422 1 12233456788899999999887654 3345899999987752 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+.++|+.+|.++|.+++.++.+. .+++++++||+.+.++... ... ............
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~-------~~~-~~~~~~~~~~~~------------ 213 (276)
T PRK05875 154 RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVA-------PIT-ESPELSADYRAC------------ 213 (276)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccc-------ccc-cCHHHHHHHHcC------------
Confidence 346789999999999999888765 3689999999988765210 000 000111111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc----cHHHHHHHHHHHhCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT----SVLEMVAAFEKASGK 286 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~----s~~e~~~~i~~~~g~ 286 (347)
.....+++++|+++++.+++.... ....++++++++++.+ ++.|+++.+++..|.
T Consensus 214 -----~~~~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (276)
T PRK05875 214 -----TPLPRVGEVEDVANLAMFLLSDAA-SWITGQVINVDGGHMLRRGPDFSSMLEPVFGADGL 272 (276)
T ss_pred -----CCCCCCcCHHHHHHHHHHHcCchh-cCcCCCEEEECCCeeccCCccHHHHHHHHhhHHHH
Confidence 111235789999999999987622 2245799999988876 788888887766553
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=185.83 Aligned_cols=239 Identities=14% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++++||||+|+||+++++.|+++|++|++++|+....+...+.+. ..++.++.+|+.|.+++.+++++.
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG------DARFVPVACDLTDAASLAAALANAAAE 74 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999987665544333321 246788999999999998877642
Q ss_pred --CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||........ +.....+++|+.++.++++++. +.+.++||++||...+..
T Consensus 75 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 142 (257)
T PRK07074 75 RGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA------------ 142 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC------------
Confidence 489999999965432211 2223456789999998888763 345678999999654311
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++.+. .++++++++||.++++... ... .....+......
T Consensus 143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~-----~~~--~~~~~~~~~~~~------------- 202 (257)
T PRK07074 143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWE-----ARV--AANPQVFEELKK------------- 202 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhh-----ccc--ccChHHHHHHHh-------------
Confidence 112479999999999999988765 3799999999999886210 000 000111111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHH
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~ 282 (347)
....+++++++|+++++..++.... ....++++++.++...++.|+++.+.+
T Consensus 203 ----~~~~~~~~~~~d~a~~~~~l~~~~~-~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 203 ----WYPLQDFATPDDVANAVLFLASPAA-RAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred ----cCCCCCCCCHHHHHHHHHHHcCchh-cCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 1123468999999999999996422 234578899998888889999988754
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=176.01 Aligned_cols=282 Identities=18% Similarity=0.208 Sum_probs=204.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
.+-|.|||||+|+.+|..|.+.|-+|++--|.++......+...++ .++-+...|+.|+++++++++ ..++||
T Consensus 63 VaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdL-----GQvl~~~fd~~DedSIr~vvk--~sNVVI 135 (391)
T KOG2865|consen 63 VATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDL-----GQVLFMKFDLRDEDSIRAVVK--HSNVVI 135 (391)
T ss_pred EEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccc-----cceeeeccCCCCHHHHHHHHH--hCcEEE
Confidence 4668999999999999999999999999888776654433333333 478899999999999999999 689999
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 163 (347)
|+.|--. +...-.+.++|+.+++.|++.|++.|+.|||++|+... .....+-|-.+|+++|..
T Consensus 136 NLIGrd~----eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lga-------------nv~s~Sr~LrsK~~gE~a 198 (391)
T KOG2865|consen 136 NLIGRDY----ETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGA-------------NVKSPSRMLRSKAAGEEA 198 (391)
T ss_pred Eeecccc----ccCCcccccccchHHHHHHHHHHhhChhheeehhhccc-------------cccChHHHHHhhhhhHHH
Confidence 9998421 22223467889999999999999999999999999763 234456788999999999
Q ss_pred HHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHH
Q 040584 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243 (347)
Q Consensus 164 ~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a 243 (347)
+++..- ..+++||+.+||.. ++.+..+.....+ -..+++++. .....-+.|||-|||
T Consensus 199 VrdafP-----eAtIirPa~iyG~e-----------Drfln~ya~~~rk--~~~~pL~~~-----GekT~K~PVyV~DVa 255 (391)
T KOG2865|consen 199 VRDAFP-----EATIIRPADIYGTE-----------DRFLNYYASFWRK--FGFLPLIGK-----GEKTVKQPVYVVDVA 255 (391)
T ss_pred HHhhCC-----cceeechhhhcccc-----------hhHHHHHHHHHHh--cCceeeecC-----CcceeeccEEEehHH
Confidence 998543 45999999999952 1223334333332 224566651 235667899999999
Q ss_pred HHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCC-------CCcc----------cCCCCCC--------
Q 040584 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK-------IPLV----------KSGRRPG-------- 298 (347)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~-------~~~~----------~~~~~~~-------- 298 (347)
.+|..++.. +...|++|..++++...+.|+++.+.+....- .|+. ..|+.+.
T Consensus 256 a~IvnAvkD---p~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pln~d~i 332 (391)
T KOG2865|consen 256 AAIVNAVKD---PDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLNRDQI 332 (391)
T ss_pred HHHHHhccC---ccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCCCHHHh
Confidence 999999988 55778999999999999999999987655431 1110 0111111
Q ss_pred ---CchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 299 ---DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 299 ---~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
...+..++...-.++||..++ .++...-+.+.-|+.-
T Consensus 333 e~~~v~~~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~~ 372 (391)
T KOG2865|consen 333 ERLTVTDLVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRKG 372 (391)
T ss_pred hheeehhhhcCCCCcHhhcCceee-ecccccHHHHHHHhhc
Confidence 123444555555678898877 7776665555444433
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=180.95 Aligned_cols=237 Identities=15% Similarity=0.105 Sum_probs=161.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++|||||+|+||+++++.|+++|++|++++|+........+.+... +.++.++.+|+.|.+++..+++..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA----GGSVIYLVADVTKEDEIADMIAAAAAEF 76 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999865544444333221 346888999999999777665431
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+|+....... .+..+..++.|+.++..+++++ ++.+.+++|++||...+.. ..
T Consensus 77 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~-----------~~ 145 (255)
T TIGR01963 77 GGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA-----------SP 145 (255)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC-----------CC
Confidence 58999999997543221 2233456778999988887766 4556789999999866532 22
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .+++++++||+.+++|.- ...+................. .
T Consensus 146 ~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~ 210 (255)
T TIGR01963 146 FKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLV--------------EKQIADQAKTRGIPEEQVIRE-V 210 (255)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHH--------------HHHHHhhhcccCCCchHHHHH-H
Confidence 34689999999999998776653 379999999999998720 001111100000000000000 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+..+...+++++++|+|++++.++.... ....++.|+++++.
T Consensus 211 ~~~~~~~~~~~~~~d~a~~~~~~~~~~~-~~~~g~~~~~~~g~ 252 (255)
T TIGR01963 211 MLPGQPTKRFVTVDEVAETALFLASDAA-AGITGQAIVLDGGW 252 (255)
T ss_pred HHccCccccCcCHHHHHHHHHHHcCccc-cCccceEEEEcCcc
Confidence 0013345679999999999999987621 12356899998664
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=182.56 Aligned_cols=233 Identities=15% Similarity=0.136 Sum_probs=164.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||.++++.|+++|++|++++|+........+.+ ...+.++.+|++|.+++.++++..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-------GPAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-------CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999998765544333222 235788999999999998887642
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|+|||+||...... ..+.+...+++|+.++.++++++... + -++||++||.... .+..
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~-----------~~~~ 148 (257)
T PRK07067 80 GIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR-----------RGEA 148 (257)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC-----------CCCC
Confidence 5899999999654322 23445668899999999999987643 1 2489999996432 1234
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCC--CceEEeccc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR--PALTVFGTD 224 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~ 224 (347)
+...|+.+|.+.+.+++.++.+. .++++++++||.++++.... ....+... .... .....++
T Consensus 149 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~-- 214 (257)
T PRK07067 149 LVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQ-----------VDALFARY-ENRPPGEKKRLVG-- 214 (257)
T ss_pred CCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhh-----------hhhhhhhc-cCCCHHHHHHHHh--
Confidence 56789999999999998887753 48999999999999863110 00000000 0000 0000011
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.+...+.+++++|+|+++.+++... .....+++|++.+|+.+|
T Consensus 215 ----~~~~~~~~~~~~dva~~~~~l~s~~-~~~~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 215 ----EAVPLGRMGVPDDLTGMALFLASAD-ADYIVAQTYNVDGGNWMS 257 (257)
T ss_pred ----hcCCCCCccCHHHHHHHHHHHhCcc-cccccCcEEeecCCEeCC
Confidence 1233456899999999999998762 223568999998886553
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=183.15 Aligned_cols=239 Identities=14% Similarity=0.089 Sum_probs=163.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++|+||||+|+||+++++.|+++|++|++++|+........+.+....+ ..++.++.+|++|.+++.+++++.
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~ 78 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYG--EGMAYGFGADATSEQSVLALSRGVDEI 78 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC--CceeEEEEccCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999876655444443332211 135788999999999888777642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccc-cCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATA-YGWPKVVPCTEEF 145 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~-yg~~~~~~~~e~~ 145 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+ -+++|++||... ++
T Consensus 79 ~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~----------- 147 (259)
T PRK12384 79 FGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVG----------- 147 (259)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccC-----------
Confidence 6899999999654332 2234456779999998877776543 34 358999999643 32
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc-CCCCceEEec
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV-GRRPALTVFG 222 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g 222 (347)
.....+|+.+|.+.+.+++.++.+. .++++.++|||.++++.. ...+.+....... ........+.
T Consensus 148 -~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 216 (259)
T PRK12384 148 -SKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPM----------FQSLLPQYAKKLGIKPDEVEQYYI 216 (259)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchh----------hhhhhHHHHHhcCCChHHHHHHHH
Confidence 2234689999999999998887642 489999999999887521 0012111110000 0000000011
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
++...+.+++++|+++++..++.... ....+++|++.+++.
T Consensus 217 ------~~~~~~~~~~~~dv~~~~~~l~~~~~-~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 217 ------DKVPLKRGCDYQDVLNMLLFYASPKA-SYCTGQSINVTGGQV 257 (259)
T ss_pred ------HhCcccCCCCHHHHHHHHHHHcCccc-ccccCceEEEcCCEE
Confidence 12334568899999999998886522 235679999988764
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=180.35 Aligned_cols=230 Identities=14% Similarity=0.110 Sum_probs=164.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.....+.+... +.++..+.+|++|.+++.+++++.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ----GLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 379999999999999999999999999999998766554444444321 345788899999999999887642
Q ss_pred -CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|+|||+||........ +..+..+++|+.++.++++++.+. +.++||++||...+. +..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-----------~~~ 154 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL-----------ARP 154 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc-----------CCC
Confidence 589999999976443322 233567779999999999887643 567999999976531 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .+++++++||+.+.++..... .. .+.+.......
T Consensus 155 ~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~------~~---~~~~~~~~~~~------------ 213 (255)
T PRK07523 155 GIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAAL------VA---DPEFSAWLEKR------------ 213 (255)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhh------cc---CHHHHHHHHhc------------
Confidence 56789999999999999887753 489999999999888621000 00 01111111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+..++|+|+++++++... .....++++++.++...|
T Consensus 214 ----~~~~~~~~~~dva~~~~~l~~~~-~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 214 ----TPAGRWGKVEELVGACVFLASDA-SSFVNGHVLYVDGGITAS 254 (255)
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCch-hcCccCcEEEECCCeecc
Confidence 01123668999999999988652 223567899998876554
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-23 Score=178.70 Aligned_cols=229 Identities=18% Similarity=0.149 Sum_probs=161.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+|+++||||+|+||+++++.|+++|++|++++|+.... ....+.+.. ...++.++.+|++|.+++.++++..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA----LGVEVIFFPADVADLSAHEAMLDAAQA 76 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999998765322 222222221 1346888999999999988877632
Q ss_pred ---CCcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHHHc-----C-----CCeEEEeccccccCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMAAH-----G-----CKNLVFSSSATAYGWPKV 138 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~~~-----~-----~~~iv~~SS~~~yg~~~~ 138 (347)
.+|+|||+||..... .+.+.+...+++|+.++.++++++... + .++||++||...+.
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---- 152 (256)
T PRK12745 77 AWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM---- 152 (256)
T ss_pred hcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc----
Confidence 689999999964321 123445667899999999998876542 1 45799999977642
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
+..+...|+.+|.+.|.+++.++.+. .+++++++|||.+.++... .. ...+......+.
T Consensus 153 -------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~-------~~---~~~~~~~~~~~~-- 213 (256)
T PRK12745 153 -------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTA-------PV---TAKYDALIAKGL-- 213 (256)
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccc-------cc---chhHHhhhhhcC--
Confidence 23445789999999999999888652 4899999999999876311 00 001111111111
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
. ....+.+.+|+++++..++... .+...+++|++.++...
T Consensus 214 -~-------------~~~~~~~~~d~a~~i~~l~~~~-~~~~~G~~~~i~gg~~~ 253 (256)
T PRK12745 214 -V-------------PMPRWGEPEDVARAVAALASGD-LPYSTGQAIHVDGGLSI 253 (256)
T ss_pred -C-------------CcCCCcCHHHHHHHHHHHhCCc-ccccCCCEEEECCCeec
Confidence 0 1124678999999999887652 22346789999877543
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=169.21 Aligned_cols=303 Identities=17% Similarity=0.172 Sum_probs=220.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.+|||||+-|.+|..+++.|-.. |-+ |++-+-. ...... -..-.++..|+-|...+++++-..++|
T Consensus 45 PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~-KPp~~V-----------~~~GPyIy~DILD~K~L~eIVVn~RId 112 (366)
T KOG2774|consen 45 PRVLITGSLGQLGRGLASLLRYMYGSECVILSDIV-KPPANV-----------TDVGPYIYLDILDQKSLEEIVVNKRID 112 (366)
T ss_pred CeEEEecchHHHhHHHHHHHHHHhCCccEehhhcc-CCchhh-----------cccCCchhhhhhccccHHHhhcccccc
Confidence 48999999999999999988775 644 4443221 111111 112346778999999999998777899
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCC-CCCCCCCchhhhHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEE-FPLQAMNPYGRSKLF 159 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~-~~~~~~~~Y~~sK~~ 159 (347)
.+||..+..+. --+.+.....++|++|..|+++.+++++. ++...||.+.||+.....-+.+ .-.+|...||.||..
T Consensus 113 WL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVH 190 (366)
T KOG2774|consen 113 WLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVH 190 (366)
T ss_pred eeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhHHH
Confidence 99999986543 12345566789999999999999999988 7777999999998655433333 346789999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
+|.+-..+.+.+ ++++.++|++.++...+.|.|..+.. ...+-....+|+..+.. .++.+...+|.
T Consensus 191 AEL~GEy~~hrF-g~dfr~~rfPg~is~~~pgggttdya----~A~f~~Al~~gk~tCyl---------rpdtrlpmmy~ 256 (366)
T KOG2774|consen 191 AELLGEYFNHRF-GVDFRSMRFPGIISATKPGGGTTDYA----IAIFYDALQKGKHTCYL---------RPDTRLPMMYD 256 (366)
T ss_pred HHHHHHHHHhhc-CccceecccCcccccCCCCCCcchhH----HHHHHHHHHcCCccccc---------CCCccCceeeh
Confidence 999888877775 99999999999998655555554332 23344455577654443 36778889999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhC-CCCCcccCC-CCCCCchhhccChHHHHHhcCCc
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG-KKIPLVKSG-RRPGDAEIVYASTEKAERELNWK 317 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lg~~ 317 (347)
.|+.++++..+...++ .....+||++ +-+.|.+|++..+.+... .+....... ..-.+.....+|.+.+++++.|+
T Consensus 257 ~dc~~~~~~~~~a~~~-~lkrr~ynvt-~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~ 334 (366)
T KOG2774|consen 257 TDCMASVIQLLAADSQ-SLKRRTYNVT-GFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEK 334 (366)
T ss_pred HHHHHHHHHHHhCCHH-Hhhhheeeec-eeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHHh
Confidence 9999999999987443 3456899995 667999999999988764 222221111 11123455678999999999999
Q ss_pred ccccHHHHHHHHHHHHhh
Q 040584 318 AKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 318 p~~~~~~~i~~~~~~~~~ 335 (347)
-.+.+-..+.-++.--+.
T Consensus 335 h~~~l~~~i~~~i~~~~~ 352 (366)
T KOG2774|consen 335 HSLHLLSIISTVVAVHKS 352 (366)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 998888888777764443
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=177.66 Aligned_cols=229 Identities=18% Similarity=0.140 Sum_probs=158.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++||||+|+||++++++|+++|++|+++.|+... .+.....+... +.++.++.+|++|.+++.++++..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999998886542 22222233221 346788999999999988877631
Q ss_pred -CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchh
Q 040584 78 -KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYG 154 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~ 154 (347)
++|+|||+||.... ...++...+++|+.++.++++++... ..+++|++||........ .+ +.....+|+
T Consensus 83 ~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~--~~~~~~~Y~ 154 (248)
T PRK07806 83 GGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VK--TMPEYEPVA 154 (248)
T ss_pred CCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----cc--CCccccHHH
Confidence 58999999986432 23345678899999999999998864 235899999965421110 01 112256899
Q ss_pred hhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 155 RSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
.+|.++|.+++.++.+. .++++++++|+.+-+|.. ..++.+. ....+. . ....
T Consensus 155 ~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~--------------~~~~~~~---~~~~~~--~------~~~~ 209 (248)
T PRK07806 155 RSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVT--------------ATLLNRL---NPGAIE--A------RREA 209 (248)
T ss_pred HHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchh--------------hhhhccC---CHHHHH--H------HHhh
Confidence 99999999999987664 478899998876655410 0000000 000000 0 0001
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
...+++++|+++++..+++. +...+++|++++++..
T Consensus 210 ~~~~~~~~dva~~~~~l~~~---~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 210 AGKLYTVSEFAAEVARAVTA---PVPSGHIEYVGGADYF 245 (248)
T ss_pred hcccCCHHHHHHHHHHHhhc---cccCccEEEecCccce
Confidence 23589999999999999986 3457899999888643
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=176.91 Aligned_cols=224 Identities=18% Similarity=0.146 Sum_probs=162.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+|+||||+|+||+++++.|+++|++|+++.|++.+.......+... +.++.++.+|+.|.+++.+++++.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA----GGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999876554434333322 346788899999999888877631
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|+|||+||...... ..+.+...++.|+.++.++++++. +.+.++||++||..... +..+
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~-----------~~~~ 150 (246)
T PRK05653 82 ALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT-----------GNPG 150 (246)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc-----------CCCC
Confidence 5799999999754322 222345578899999999988774 45677999999975431 2345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++++. .+++++++||+.++++... .+.....+.....
T Consensus 151 ~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~-----------~~~~~~~~~~~~~------------- 206 (246)
T PRK05653 151 QTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTE-----------GLPEEVKAEILKE------------- 206 (246)
T ss_pred CcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchh-----------hhhHHHHHHHHhc-------------
Confidence 5779999999999999887653 3789999999999987311 1112222211111
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+++++|+++++..++.... ....+++|++++|.
T Consensus 207 ---~~~~~~~~~~dva~~~~~~~~~~~-~~~~g~~~~~~gg~ 244 (246)
T PRK05653 207 ---IPLGRLGQPEEVANAVAFLASDAA-SYITGQVIPVNGGM 244 (246)
T ss_pred ---CCCCCCcCHHHHHHHHHHHcCchh-cCccCCEEEeCCCe
Confidence 112457889999999999886522 23467899998775
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=178.92 Aligned_cols=224 Identities=18% Similarity=0.220 Sum_probs=155.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||+++++.|+++|++|+++.|+........+.+... +.++.++.+|++|.+++.++++..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD----GGEAVAFPLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999888755443333333221 346778899999999998887642
Q ss_pred CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||....... .+.+...+++|+.++.++++.+. +.+.++||++||...|. +...
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~-----------~~~~ 155 (274)
T PRK07775 87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALR-----------QRPH 155 (274)
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcC-----------CCCC
Confidence 58999999997543222 22344567899999999988764 33456899999987763 2234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.++|.+++.++++. .+++++++|||.+.++. +... ....+..++......
T Consensus 156 ~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~----~~~~--~~~~~~~~~~~~~~~-------------- 215 (274)
T PRK07775 156 MGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGM----GWSL--PAEVIGPMLEDWAKW-------------- 215 (274)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcc----cccC--ChhhhhHHHHHHHHh--------------
Confidence 5689999999999999887654 38999999998876541 1100 011111222211110
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
.+...+.+++++|+|++++.+++. + ..+.+||+.
T Consensus 216 -~~~~~~~~~~~~dva~a~~~~~~~---~-~~~~~~~~~ 249 (274)
T PRK07775 216 -GQARHDYFLRASDLARAITFVAET---P-RGAHVVNME 249 (274)
T ss_pred -cccccccccCHHHHHHHHHHHhcC---C-CCCCeeEEe
Confidence 012234689999999999999876 2 234677763
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=178.53 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=130.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+........+ . ...++..+.+|++|.+++.+++++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~----~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA----L---HPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh----h---cCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999987654332211 1 1346778899999999988877642
Q ss_pred -CCcEEEEccccccCCcccc----CcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESVQ----KPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||........+ .....+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~-----------~~~ 145 (277)
T PRK06180 77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI-----------TMP 145 (277)
T ss_pred CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC-----------CCC
Confidence 5899999999754333222 234568999999999988753 34567999999987652 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
+...|+.+|.++|.+++.++.+. .+++++++|||.+.++
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~ 186 (277)
T PRK06180 146 GIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTD 186 (277)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccC
Confidence 56789999999999998887663 3899999999999875
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=176.94 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=161.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|++|++++|+........+.+.. ...++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVA----DGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 38899999999999999999999999999999876554443333322 1335678899999999888776532
Q ss_pred -CCcEEEEccccccC-------CccccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-------GESVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -~~d~vih~a~~~~~-------~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
.+|+|||+||.... ....+.+...+++|+.++.++++++... +.++||++||..+|.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 150 (250)
T PRK07774 82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL----------- 150 (250)
T ss_pred CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-----------
Confidence 58999999996431 1122344567889999999998887753 356999999988763
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+.+.|+.+|.+.|.+++.+++++ .++.+++++||.+..+... .. ....+......+.. .
T Consensus 151 ---~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~-------~~--~~~~~~~~~~~~~~--~----- 211 (250)
T PRK07774 151 ---YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATR-------TV--TPKEFVADMVKGIP--L----- 211 (250)
T ss_pred ---CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccc-------cc--CCHHHHHHHHhcCC--C-----
Confidence 34689999999999999988764 4799999999988765311 00 01112222222211 1
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.-+.+++|++++++.++.... ....+++||+.+++.++
T Consensus 212 ----------~~~~~~~d~a~~~~~~~~~~~-~~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 212 ----------SRMGTPEDLVGMCLFLLSDEA-SWITGQIFNVDGGQIIR 249 (250)
T ss_pred ----------CCCcCHHHHHHHHHHHhChhh-hCcCCCEEEECCCeecc
Confidence 114568999999998887521 22467899998887553
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=169.86 Aligned_cols=183 Identities=25% Similarity=0.309 Sum_probs=141.3
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIH 84 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (347)
|+|+||||++|+.++++|+++|++|+++.|++.+.+. ..+++++.+|+.|.+.+.++++ ++|+|||
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~------------~~~~~~~~~d~~d~~~~~~al~--~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED------------SPGVEIIQGDLFDPDSVKAALK--GADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH------------CTTEEEEESCTTCHHHHHHHHT--TSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc------------ccccccceeeehhhhhhhhhhh--hcchhhh
Confidence 7999999999999999999999999999998776543 3589999999999999999999 7999999
Q ss_pred ccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHH
Q 040584 85 FAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEIC 164 (347)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~ 164 (347)
+++.... ....+.++++++++.+++|+|++||..+|+........+.. .....|...|..+|+++
T Consensus 67 ~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~ 131 (183)
T PF13460_consen 67 AAGPPPK-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDK--PIFPEYARDKREAEEAL 131 (183)
T ss_dssp CCHSTTT-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTC--GGGHHHHHHHHHHHHHH
T ss_pred hhhhhcc-------------cccccccccccccccccccceeeeccccCCCCCcccccccc--cchhhhHHHHHHHHHHH
Confidence 9975431 27778899999999999999999999998743332111111 11156888888888887
Q ss_pred HHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHH
Q 040584 165 RDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLAD 244 (347)
Q Consensus 165 ~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~ 244 (347)
+. .+++++++||+.+||+... . ..++. ..+....++|+++|+|+
T Consensus 132 ~~-----~~~~~~ivrp~~~~~~~~~-----~---------------------~~~~~-----~~~~~~~~~i~~~DvA~ 175 (183)
T PF13460_consen 132 RE-----SGLNWTIVRPGWIYGNPSR-----S---------------------YRLIK-----EGGPQGVNFISREDVAK 175 (183)
T ss_dssp HH-----STSEEEEEEESEEEBTTSS-----S---------------------EEEES-----STSTTSHCEEEHHHHHH
T ss_pred Hh-----cCCCEEEEECcEeEeCCCc-----c---------------------eeEEe-----ccCCCCcCcCCHHHHHH
Confidence 53 2889999999999997311 0 00000 01234458999999999
Q ss_pred HHHHHHHh
Q 040584 245 GHIAALRK 252 (347)
Q Consensus 245 a~~~~~~~ 252 (347)
+++.++++
T Consensus 176 ~~~~~l~~ 183 (183)
T PF13460_consen 176 AIVEALEN 183 (183)
T ss_dssp HHHHHHH-
T ss_pred HHHHHhCC
Confidence 99998864
|
... |
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=177.62 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=162.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||+++++.|+++|++|++++|++...+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL----GRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh----CCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999998776554444444322 346788999999999988777542
Q ss_pred -CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||.... ....+.+...+++|+.++..+++++... ..++||++||...+. +..
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~-----------~~~ 149 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH-----------SQP 149 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc-----------CCC
Confidence 68999999986432 1123455678999999999999987652 235899999987642 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCC-CCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGE-DPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
+...|+.+|.+.+.+++.++.+. .++++++++||.+++|....... ..................
T Consensus 150 ~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 216 (258)
T PRK07890 150 KYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAA------------- 216 (258)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhh-------------
Confidence 56789999999999999888764 37999999999999973211000 000000000001111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+.+++|+++++++++.... ....++++.+.++.
T Consensus 217 ----~~~~~~~~~~~dva~a~~~l~~~~~-~~~~G~~i~~~gg~ 255 (258)
T PRK07890 217 ----NSDLKRLPTDDEVASAVLFLASDLA-RAITGQTLDVNCGE 255 (258)
T ss_pred ----cCCccccCCHHHHHHHHHHHcCHhh-hCccCcEEEeCCcc
Confidence 0111236789999999998887522 23556777776554
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=183.20 Aligned_cols=248 Identities=17% Similarity=0.116 Sum_probs=165.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
+++|||||+|+||++++++|+++|++|++++|+........+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----QGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999876554444333322 1346778999999999998887642
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCC------CeEEEeccccccCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGC------KNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~------~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+|||+||...... ..+.+...+++|+.++.+++++ +.+.+. +++|++||...+.
T Consensus 83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------- 153 (287)
T PRK06194 83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL--------- 153 (287)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc---------
Confidence 4899999999765432 2234455788999999997776 444333 5899999987763
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
+......|+.+|.+++.+++.++.++ .++++.++.|+.+..+ +.+...++ +..
T Consensus 154 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~-------------------~~~~~~~~--~~~ 210 (287)
T PRK06194 154 --APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG-------------------IWQSERNR--PAD 210 (287)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc-------------------cccccccC--chh
Confidence 22345689999999999999887764 1355556666544332 11111111 122
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcc-cCCCCCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-KSGRRPG 298 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~-~~~~~~~ 298 (347)
+++ ++.+.+++++++|++.++... + .++..|+++.+.+.+....... ..+....
T Consensus 211 ~~~------~~~~~~~~~~~~~~~~~~~~~------------------~-~~s~~dva~~i~~~~~~~~~~~~~~~~~~~ 265 (287)
T PRK06194 211 LAN------TAPPTRSQLIAQAMSQKAVGS------------------G-KVTAEEVAQLVFDAIRAGRFYIYSHPQALA 265 (287)
T ss_pred ccc------CccccchhhHHHHHHHhhhhc------------------c-CCCHHHHHHHHHHHHHcCCeEEEcCHHHHH
Confidence 233 567788899999887754210 0 1688999999888765332221 1222222
Q ss_pred CchhhccChHHHH
Q 040584 299 DAEIVYASTEKAE 311 (347)
Q Consensus 299 ~~~~~~~d~~k~~ 311 (347)
.......|+++++
T Consensus 266 ~~~~~~~~~~~~~ 278 (287)
T PRK06194 266 SVRTRMEDIVQQR 278 (287)
T ss_pred HHHHHHHHHHHhc
Confidence 3334455666653
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=178.11 Aligned_cols=240 Identities=16% Similarity=0.193 Sum_probs=160.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+++++||||+|+||+++++.|+++|++|++++|+....+...+...... ...++.++.+|++|.+++.+ ++.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN--LQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 4779999999999999999999999999999987665544433332221 12468889999999998876 432
Q ss_pred CCCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
..+|+||||||....... .+.+...+++|+.++.++++++ ++.+.++||++||...+. +..
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~-----------~~~ 148 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV-----------GFP 148 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC-----------CCC
Confidence 158999999996543222 2334557889999998888775 555677999999975431 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCC--CCCCC-CCCCccHHHHHHHHcCCCCceEEecc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGK--GEDPR-GIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+...|+.+|...+.+++.++.+. .+++++++|||.+.++..... ..... .........+.++....
T Consensus 149 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 219 (280)
T PRK06914 149 GLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI--------- 219 (280)
T ss_pred CCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH---------
Confidence 55789999999999998886432 389999999999987631100 00000 00001111222221100
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHH
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVL 274 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~ 274 (347)
......+++++|+|++++.++++. .. ...|+++++..+++.
T Consensus 220 ------~~~~~~~~~~~dva~~~~~~~~~~---~~-~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 ------NSGSDTFGNPIDVANLIVEIAESK---RP-KLRYPIGKGVKLMIL 260 (280)
T ss_pred ------hhhhhccCCHHHHHHHHHHHHcCC---CC-CcccccCCchHHHHH
Confidence 011234688999999999999872 22 257888777655554
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=173.77 Aligned_cols=227 Identities=16% Similarity=0.129 Sum_probs=159.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+++||||+|+||+++++.|+++|++|+++.|.........+.+.......+.++.++.+|+.|.+++.++++.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEEF 85 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999998876543332222222221111245788899999999998887752
Q ss_pred CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH-----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA-----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~-----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+|||+||...... ..+++...+++|+.++.++++++. +.+.+++|++||...+. +.
T Consensus 86 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~ 154 (249)
T PRK12827 86 GRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVR-----------GN 154 (249)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcC-----------CC
Confidence 25899999999754222 233445678899999999999887 34567999999987653 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.+|.+.+.+++.++.+. .+++++++|||.+.++... . ... ........ .
T Consensus 155 ~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~-----~------~~~-~~~~~~~~--~-------- 212 (249)
T PRK12827 155 RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMAD-----N------AAP-TEHLLNPV--P-------- 212 (249)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccc-----c------cch-HHHHHhhC--C--------
Confidence 345689999999999998887764 3799999999999987310 0 000 01111100 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+.+.+|+++++.+++.... ....++.+++.++.
T Consensus 213 -------~~~~~~~~~va~~~~~l~~~~~-~~~~g~~~~~~~g~ 248 (249)
T PRK12827 213 -------VQRLGEPDEVAALVAFLVSDAA-SYVTGQVIPVDGGF 248 (249)
T ss_pred -------CcCCcCHHHHHHHHHHHcCccc-CCccCcEEEeCCCC
Confidence 1124578999999998886522 23457888887654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=175.61 Aligned_cols=240 Identities=19% Similarity=0.192 Sum_probs=162.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE----GFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999988766554444443321 346778899999999998887642
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHH----HcC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMA----AHG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~----~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||....... .+.+...+++|+.++.++++++. +.+ .++||++||...+. +.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~-----------~~ 150 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV-----------PN 150 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc-----------CC
Confidence 58999999997543322 23345678999999999988764 333 46899999987763 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.+|.+.+.+.+.++.+. .++++++++||.+.++.... .. .+.....+........+
T Consensus 151 ~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~-----------~~-~~~~~~~~~~~~~~~~~--- 215 (275)
T PRK05876 151 AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN-----------SE-RIRGAACAQSSTTGSPG--- 215 (275)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccc-----------hh-hhcCccccccccccccc---
Confidence 556789999998777776666553 38999999999887752100 00 00000000100111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHH
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKA 283 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~ 283 (347)
.....+++++++|+|++++.++++ . +.+.+. ......++.+.+.+.
T Consensus 216 ---~~~~~~~~~~~~dva~~~~~ai~~----~---~~~~~~--~~~~~~~~~~~~~~~ 261 (275)
T PRK05876 216 ---PLPLQDDNLGVDDIAQLTADAILA----N---RLYVLP--HAASRASIRRRFERI 261 (275)
T ss_pred ---cccccccCCCHHHHHHHHHHHHHc----C---CeEEec--ChhhHHHHHHHHHHH
Confidence 223456789999999999999986 1 334443 234445555555444
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=176.18 Aligned_cols=225 Identities=15% Similarity=0.114 Sum_probs=157.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
++++||||+|+||++++++|+++|++|+++ .|+........+.+.. .+.++.++.+|++|.+++.+++++
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIES----NGGKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh----cCCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999775 5654333332222221 134678899999999999887763
Q ss_pred ------CCCcEEEEccccccCCcccc----CcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 77 ------TKFDAVIHFAGLKAVGESVQ----KPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 77 ------~~~d~vih~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
.++|+|||+||........+ .....+++|+.++.++++++... ..+++|++||..++.
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~---------- 152 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL---------- 152 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC----------
Confidence 25899999999754332222 23456779999999999987753 345899999988763
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+..+...|+.+|.+.+.+++.++.+. .++++++++||.+++|-.... . ..+.+.......
T Consensus 153 -~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~-------~--~~~~~~~~~~~~-------- 214 (254)
T PRK12746 153 -GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKL-------L--DDPEIRNFATNS-------- 214 (254)
T ss_pred -CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhh-------c--cChhHHHHHHhc--------
Confidence 33455689999999999998887753 379999999999988621000 0 001111111111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.....+++++|+++++..++.... ....+++|+++++
T Consensus 215 --------~~~~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 --------SVFGRIGQVEDIADAVAFLASSDS-RWVTGQIIDVSGG 251 (254)
T ss_pred --------CCcCCCCCHHHHHHHHHHHcCccc-CCcCCCEEEeCCC
Confidence 111246789999999988887522 2245789999766
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=175.13 Aligned_cols=228 Identities=16% Similarity=0.128 Sum_probs=159.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEE-EeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVV-VDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++||||+|+||++++++|+++|++|++ ..|+....+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEAL----GRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999999999876 466654444333343322 346788999999999998888743
Q ss_pred -CCcEEEEccccccCCcccc----CcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESVQ----KPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||.....+..+ .....+++|+.++..+++++.. .+.++||++||...+. +..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~~ 149 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR-----------YLE 149 (250)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc-----------CCC
Confidence 5899999999754333222 2234677899999999887764 3456999999976542 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|.++|.+++.++.++ .++++++++|+.+..+..... .. .......... ..
T Consensus 150 ~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~-------~~-~~~~~~~~~~-~~----------- 209 (250)
T PRK08063 150 NYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHF-------PN-REELLEDARA-KT----------- 209 (250)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhc-------cC-chHHHHHHhc-CC-----------
Confidence 56789999999999999887664 479999999999886531110 00 0111111111 10
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+++.+|+++++++++.... ....++.+++.++..+
T Consensus 210 -----~~~~~~~~~dva~~~~~~~~~~~-~~~~g~~~~~~gg~~~ 248 (250)
T PRK08063 210 -----PAGRMVEPEDVANAVLFLCSPEA-DMIRGQTIIVDGGRSL 248 (250)
T ss_pred -----CCCCCcCHHHHHHHHHHHcCchh-cCccCCEEEECCCeee
Confidence 01136889999999999887522 2345788988877543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-23 Score=180.66 Aligned_cols=233 Identities=16% Similarity=0.140 Sum_probs=157.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++|||||+|+||++++++|+++|++|+++.|+....+...+... ..++.++.+|+.|++++.++++..
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP------GAKVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh------cCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999987654433322221 115678999999999988877642
Q ss_pred -CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHHH----HcCC-CeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVMA----AHGC-KNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~-~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||.... ....+.+...+++|+.++.++++++. ..+. ++|+++||..... +
T Consensus 85 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~-----------~ 153 (264)
T PRK12829 85 GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL-----------G 153 (264)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc-----------C
Confidence 68999999997521 12234456788999999999888764 3344 5788888765421 1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCC-CCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGED-PRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
......|+.+|.+.|.+++.++.+. .+++++++|||+++||........ .................
T Consensus 154 ~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 222 (264)
T PRK12829 154 YPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLE----------- 222 (264)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHh-----------
Confidence 2234579999999999998887653 489999999999999742110000 00000000000000000
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+++++|+++++..++... .....++.|+++++.
T Consensus 223 ------~~~~~~~~~~~d~a~~~~~l~~~~-~~~~~g~~~~i~~g~ 261 (264)
T PRK12829 223 ------KISLGRMVEPEDIAATALFLASPA-ARYITGQAISVDGNV 261 (264)
T ss_pred ------cCCCCCCCCHHHHHHHHHHHcCcc-ccCccCcEEEeCCCc
Confidence 011234899999999998887541 123467899998765
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=178.45 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=162.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh--HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS--EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|++|||||+|+||++++++|+++|++|++..++.... +...+.+.. .+.++.++.+|++|.+++.+++++.
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA----EGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH----cCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999999999998877654321 222222222 2346778999999999988877642
Q ss_pred ---CCcEEEEccccccCC-----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVG-----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||..... .+.+.+...+++|+.++..+++++... .-++||++||...|. +.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~-----------~~ 199 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ-----------PS 199 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC-----------CC
Confidence 689999999964221 133456778999999999999998753 235999999998874 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++.+. .++++++++||.+.+|.... .. .....+......
T Consensus 200 ~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~-----~~---~~~~~~~~~~~~------------ 259 (300)
T PRK06128 200 PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPS-----GG---QPPEKIPDFGSE------------ 259 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCccc-----CC---CCHHHHHHHhcC------------
Confidence 345679999999999999888764 48999999999999873110 00 001122221111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.....+.+.+|++.++.+++... .....+++|++.+|..+
T Consensus 260 -----~p~~r~~~p~dva~~~~~l~s~~-~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 260 -----TPMKRPGQPVEMAPLYVLLASQE-SSYVTGEVFGVTGGLLL 299 (300)
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCcc-ccCccCcEEeeCCCEeC
Confidence 11123568999999999887652 22356899999887654
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=188.26 Aligned_cols=236 Identities=17% Similarity=0.120 Sum_probs=162.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhh----c-cCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELA----G-YQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
+++|+||||+|+||++++++|+++|++|+++.|+..........+.... + ....++.++.+|+.|.+++.+++.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg- 158 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG- 158 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc-
Confidence 4789999999999999999999999999999998766554444332211 0 012357899999999999999998
Q ss_pred CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhh
Q 040584 77 TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRS 156 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~s 156 (347)
++|+|||++|.... ...++...+++|+.++.+++++|++.+++|||++||.+++.... .. ........|..+
T Consensus 159 -giDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~----p~-~~~~sk~~~~~~ 230 (576)
T PLN03209 159 -NASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF----PA-AILNLFWGVLCW 230 (576)
T ss_pred -CCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc----cc-cchhhHHHHHHH
Confidence 69999999986431 11234556889999999999999999999999999987631110 00 112234557778
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
|..+|+.+.. .++++++||||.++++... + . . .+ .+.... .+......
T Consensus 231 KraaE~~L~~-----sGIrvTIVRPG~L~tp~d~-~---~-~-------------t~---~v~~~~------~d~~~gr~ 278 (576)
T PLN03209 231 KRKAEEALIA-----SGLPYTIVRPGGMERPTDA-Y---K-E-------------TH---NLTLSE------EDTLFGGQ 278 (576)
T ss_pred HHHHHHHHHH-----cCCCEEEEECCeecCCccc-c---c-c-------------cc---ceeecc------ccccCCCc
Confidence 8888888764 3899999999999876210 0 0 0 00 000000 01111225
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc---ccHHHHHHHH
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG---TSVLEMVAAF 280 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~---~s~~e~~~~i 280 (347)
+..+|||+++++++.+. ....+.+|.+.++.. ..+.++++.+
T Consensus 279 isreDVA~vVvfLasd~--~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 279 VSNLQVAELMACMAKNR--RLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred cCHHHHHHHHHHHHcCc--hhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 78999999999998862 124568999987753 4455555544
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=176.76 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=160.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||+++++.|+++|++|++++|++.........+.. +.++.++.+|+.|.+++..++++.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-----GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999987655443333321 245788999999999999887642
Q ss_pred CCcEEEEccccccCC-----ccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG-----ESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||..... ...+.+...+++|+.++..+++.+.. .+.++||++||...++ +..
T Consensus 81 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~ 149 (251)
T PRK07231 81 SVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR-----------PRP 149 (251)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC-----------CCC
Confidence 589999999964321 12344566889999998877776553 4567999999988763 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|...+.+++.++.++ .+++++.++||.+.++....... ............
T Consensus 150 ~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~------~~~~~~~~~~~~-------------- 209 (251)
T PRK07231 150 GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMG------EPTPENRAKFLA-------------- 209 (251)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhc------ccChHHHHHHhc--------------
Confidence 56789999999999998887764 37899999999887652111000 000011111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......+++++|+|++++.++.... ....++.+.+.++..
T Consensus 210 ---~~~~~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~~~gg~~ 249 (251)
T PRK07231 210 ---TIPLGRLGTPEDIANAALFLASDEA-SWITGVTLVVDGGRC 249 (251)
T ss_pred ---CCCCCCCcCHHHHHHHHHHHhCccc-cCCCCCeEEECCCcc
Confidence 1112346899999999999986522 234567778876643
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=173.98 Aligned_cols=228 Identities=16% Similarity=0.115 Sum_probs=158.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++|+||||+|+||++++++|+++|++|++..|+... .......+... +.++..+.+|+++.+++..++++.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN----GGEGIGVLADVSTREGCETLAKATIDRY 82 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc----CCeeEEEEeccCCHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999877654332 22212222221 335677889999999888777642
Q ss_pred -CCcEEEEccccccCCcccc----CcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESVQ----KPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~~----~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+|||+||........+ .....+++|+.++.++++++.+. ..++||++||...|. +..+.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~ 151 (252)
T PRK06077 83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR-----------PAYGL 151 (252)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC-----------CCCCc
Confidence 6899999999744332221 22457889999999998887754 235899999988763 44566
Q ss_pred CchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
+.|+.+|.++|.+++.++++. +++.+.+++|+.+.++..... ........ ..... . +
T Consensus 152 ~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~----~~~~~~~~---~~~~~-~---~----------- 209 (252)
T PRK06077 152 SIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESL----FKVLGMSE---KEFAE-K---F----------- 209 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhh----hhcccccH---HHHHH-h---c-----------
Confidence 899999999999999998875 368999999998877521000 00000000 00000 0 0
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.....+++++|+|++++.++.. +...+++|++++++.+
T Consensus 210 -~~~~~~~~~~dva~~~~~~~~~---~~~~g~~~~i~~g~~~ 247 (252)
T PRK06077 210 -TLMGKILDPEEVAEFVAAILKI---ESITGQVFVLDSGESL 247 (252)
T ss_pred -CcCCCCCCHHHHHHHHHHHhCc---cccCCCeEEecCCeec
Confidence 1122579999999999999975 3456789999888643
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=176.36 Aligned_cols=231 Identities=18% Similarity=0.145 Sum_probs=160.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+........+.+... ..++.++.+|++|.++++++++..
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK----GGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999999999999988766554444333322 346888999999999988887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+.....+++|+.++.++++++. +.+.+++|++||...++. ..
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~-----------~~ 147 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVG-----------SS 147 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccC-----------CC
Confidence 5899999998643222 122334578899999999877765 455679999999887642 23
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++++. .++++++++|+.++++....... ..... ..+........ +
T Consensus 148 ~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~----~------- 212 (250)
T TIGR03206 148 GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICG-GAENP---EKLREAFTRAI----P------- 212 (250)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhh-ccCCh---HHHHHHHHhcC----C-------
Confidence 34679999999999998887764 37999999999998863111000 00000 00111111110 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+|+++..++... .....+++++++++.
T Consensus 213 ------~~~~~~~~dva~~~~~l~~~~-~~~~~g~~~~~~~g~ 248 (250)
T TIGR03206 213 ------LGRLGQPDDLPGAILFFSSDD-ASFITGQVLSVSGGL 248 (250)
T ss_pred ------ccCCcCHHHHHHHHHHHcCcc-cCCCcCcEEEeCCCc
Confidence 112456789999999988752 223567899997663
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=172.13 Aligned_cols=232 Identities=16% Similarity=0.133 Sum_probs=155.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.. .....+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRA----AGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHh----cCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999988642 2222223222 1346778899999998888777632
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||.... .+ ..+.+...+++|+.++..+++. +++.+.++||++||...++.
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 150 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI------------ 150 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC------------
Confidence 68999999985321 11 2334456778899888765544 44556679999999877531
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCC-CCC-CCCCCCccHH-HHHHHHcCCCCceEEec
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGK-GED-PRGIPNNLMP-FVTQVAVGRRPALTVFG 222 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~-~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g 222 (347)
+..+|+.+|.+.+.+++.++.++ .++++++++||++++|..... ... .......+.+ +..+..... ++.
T Consensus 151 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--- 224 (260)
T PRK12823 151 -NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSS--LMK--- 224 (260)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccC--Ccc---
Confidence 23579999999999999988764 479999999999999721000 000 0000011222 222222211 111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
-+.+++|+++++.+++... .....++++++.+++
T Consensus 225 ------------~~~~~~dva~~~~~l~s~~-~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 225 ------------RYGTIDEQVAAILFLASDE-ASYITGTVLPVGGGD 258 (260)
T ss_pred ------------cCCCHHHHHHHHHHHcCcc-cccccCcEEeecCCC
Confidence 2447899999999888652 223567899997764
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=169.39 Aligned_cols=215 Identities=14% Similarity=0.125 Sum_probs=157.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
+++|||||+|+||+++++.|+++|++|++++|+..+.....+.+.. .....+.+|+.|.+++.+++++.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA------DALRIGGIDLVDPQAARRAVDEVNRQFG 81 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh------cCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6999999999999999999999999999999976554433333322 24677889999999988877642
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.+...++.|+.++.++++++. +.+.+++|++||...++. ..+
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------~~~ 150 (239)
T PRK12828 82 RLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA-----------GPG 150 (239)
T ss_pred CcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC-----------CCC
Confidence 5899999999654322 222334567889999999888764 346789999999987642 234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++... .++++.++||+.++++.. .. . ..
T Consensus 151 ~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~------------------~~----~---~~-------- 197 (239)
T PRK12828 151 MGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPN------------------RA----D---MP-------- 197 (239)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcch------------------hh----c---CC--------
Confidence 5679999999999998776653 379999999999998610 00 0 00
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......+++++|+++++..++.... ....++.+++.++..
T Consensus 198 --~~~~~~~~~~~dva~~~~~~l~~~~-~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 198 --DADFSRWVTPEQIAAVIAFLLSDEA-QAITGASIPVDGGVA 237 (239)
T ss_pred --chhhhcCCCHHHHHHHHHHHhCccc-ccccceEEEecCCEe
Confidence 0111237899999999998887622 134578888877753
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=169.56 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=157.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++||||+|+||++++++|+++|++|+++.++. ...+...+.+.. .+.++.++.+|++|.+++.+++++.
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGK----EGHDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999998765433 222222222222 2346888999999999998888742
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|+|||+||...... ..+.+++.+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~ 151 (247)
T PRK12935 83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQA-----------GGF 151 (247)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcC-----------CCC
Confidence 4899999999754322 2245567889999999999888764 3456999999975542 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
+...|+.+|.+.+.+++.++.+. .++++++++||.+.++.. ..... .......+
T Consensus 152 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~-----------~~~~~~~~~~~~~~------------ 208 (247)
T PRK12935 152 GQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMV-----------AEVPEEVRQKIVAK------------ 208 (247)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhh-----------hhccHHHHHHHHHh------------
Confidence 45689999999999988877653 489999999999876521 00111 11111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+.+.+++|++++++++++. .....++.||++++.
T Consensus 209 -----~~~~~~~~~edva~~~~~~~~~--~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 209 -----IPKKRFGQADEIAKGVVYLCRD--GAYITGQQLNINGGL 245 (247)
T ss_pred -----CCCCCCcCHHHHHHHHHHHcCc--ccCccCCEEEeCCCc
Confidence 1223578999999999998865 123567999998763
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=169.75 Aligned_cols=228 Identities=15% Similarity=0.097 Sum_probs=158.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++|+++|+++|++|+++.|+.+......+.+. .+.++..+.+|++|.+++.++++..
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-----AGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-----cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999987655443333332 1346788999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+.+...+++|+.++.++.+++ ++.+.++||++||...+. +..
T Consensus 80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~-----------~~~ 148 (252)
T PRK06138 80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA-----------GGR 148 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc-----------CCC
Confidence 6899999999754322 22334556889999998776654 445677999999986542 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCcc-HHHHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNL-MPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.+|.+.+.+++.++.+. .+++++++|||.++++...... .... ...+.....+.
T Consensus 149 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~------~~~~~~~~~~~~~~~~----------- 211 (252)
T PRK06138 149 GRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIF------ARHADPEALREALRAR----------- 211 (252)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhh------ccccChHHHHHHHHhc-----------
Confidence 45789999999999999887764 3799999999999887321110 0000 01111111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.....+++++|++++++.++.+.. ....+..+.+.++
T Consensus 212 -----~~~~~~~~~~d~a~~~~~l~~~~~-~~~~g~~~~~~~g 248 (252)
T PRK06138 212 -----HPMNRFGTAEEVAQAALFLASDES-SFATGTTLVVDGG 248 (252)
T ss_pred -----CCCCCCcCHHHHHHHHHHHcCchh-cCccCCEEEECCC
Confidence 011136889999999999987732 2235677777654
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=170.90 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=157.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+|+++||||+|+||+++++.|+++|++|+++.+... ......+.+.. .+.++.++.+|++|.+++.+++++.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRA----LGRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh----cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999988766432 22222222222 1346788999999999998887632
Q ss_pred ---CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||...... ..+.+...+++|+.++..+++++... +-+++|+++|...+. +
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~-----------~ 152 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN-----------L 152 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC-----------C
Confidence 5899999999643321 22345678899999999999887653 235888888865542 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
......|+.+|.++|.+++.++++. ..+.+++++||.++.+. . ............. .
T Consensus 153 ~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~--------~----~~~~~~~~~~~~~----~------ 210 (258)
T PRK09134 153 NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSG--------R----QSPEDFARQHAAT----P------ 210 (258)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCc--------c----cChHHHHHHHhcC----C------
Confidence 2223579999999999999988765 34899999998876531 0 0111112211111 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
.+ ...+++|+|++++.+++. +...++.|++.++..+++
T Consensus 211 ---~~----~~~~~~d~a~~~~~~~~~---~~~~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 211 ---LG----RGSTPEEIAAAVRYLLDA---PSVTGQMIAVDGGQHLAW 248 (258)
T ss_pred ---CC----CCcCHHHHHHHHHHHhcC---CCcCCCEEEECCCeeccc
Confidence 01 136799999999999986 345678999988765554
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=172.69 Aligned_cols=239 Identities=17% Similarity=0.091 Sum_probs=159.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|.........+.+. ...++.++.+|++|.+++.++++..
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG-----GEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-----CCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999887554433332221 1346788999999999998887632
Q ss_pred -CCcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||..... .+.+++...+++|+.++.++++++... +.+++|++||....- +
T Consensus 93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~ 161 (280)
T PLN02253 93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI-----------G 161 (280)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc-----------c
Confidence 599999999964321 123445678999999999998876642 345899998865420 1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
......|+.+|.+.|.+++.++.+. .++.+.+++||.+..+....... ...........+....... ..+
T Consensus 162 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l------ 233 (280)
T PLN02253 162 GLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLP-EDERTEDALAGFRAFAGKN-ANL------ 233 (280)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccc-cccchhhhhhhhHHHhhcC-CCC------
Confidence 1223579999999999999988774 47999999999987652100000 0000000111111111100 000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
....++++|+++++.+++... .....++.+++.+|...+.
T Consensus 234 --------~~~~~~~~dva~~~~~l~s~~-~~~i~G~~i~vdgG~~~~~ 273 (280)
T PLN02253 234 --------KGVELTVDDVANAVLFLASDE-ARYISGLNLMIDGGFTCTN 273 (280)
T ss_pred --------cCCCCCHHHHHHHHHhhcCcc-cccccCcEEEECCchhhcc
Confidence 012468999999999988652 2235678899987765443
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=169.01 Aligned_cols=237 Identities=14% Similarity=0.097 Sum_probs=158.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+..........+... +.++.++.+|++|++++.++++..
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD----GGKAIAVKADVSDRDQVFAAVRQVVDT 76 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998766554444444332 346778999999999888877642
Q ss_pred --CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||....... .+.+...+++|+.++..+++++.. .+ ..++|++||...+. +
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~ 145 (256)
T PRK08643 77 FGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV-----------G 145 (256)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc-----------C
Confidence 58999999997543222 233456788999998877776553 22 35899999976541 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
......|+.+|.+.+.+++.++.+. .++.+++++||.+..|...............-..+........ +
T Consensus 146 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------ 216 (256)
T PRK08643 146 NPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKD---I------ 216 (256)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhcc---C------
Confidence 2235689999999999998887764 4799999999998876311000000000000000000000000 0
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++.+++... .....++++.+.+|.
T Consensus 217 -------~~~~~~~~~~va~~~~~L~~~~-~~~~~G~~i~vdgg~ 253 (256)
T PRK08643 217 -------TLGRLSEPEDVANCVSFLAGPD-SDYITGQTIIVDGGM 253 (256)
T ss_pred -------CCCCCcCHHHHHHHHHHHhCcc-ccCccCcEEEeCCCe
Confidence 0112567899999999888652 234677888887664
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=170.99 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=151.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++|+||||+|+||+++++.|+++|++|++++|+....+...+.+... +.++.++.+|+.|.+++.++++..
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH----GGEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998765544433333322 346788999999999988887642
Q ss_pred -CCcEEEEccccccCCccc-----cCcchhhhhhhhHHHHHHHHHHH---cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESV-----QKPLPYFDNNLTGTITLLEVMAA---HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~-----~~~~~~~~~nv~~~~~l~~~~~~---~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||........ +.+...+++|+.++.++++.+.. .+.+++|++||...+. +..
T Consensus 77 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~ 145 (263)
T PRK06181 77 GGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT-----------GVP 145 (263)
T ss_pred CCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC-----------CCC
Confidence 589999999975443222 22345689999999999998753 2346899999987763 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|...+.+++.++.+. .++++++++||.+..+.. .............
T Consensus 146 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~------------------~~~~~~~~~~~~~------ 201 (263)
T PRK06181 146 TRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIR------------------KRALDGDGKPLGK------ 201 (263)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcc------------------hhhcccccccccc------
Confidence 45789999999999998876543 378999999998876520 0000000001110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.+.....+++++|+++++..+++.
T Consensus 202 --~~~~~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 202 --SPMQESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred --ccccccCCCCHHHHHHHHHHHhhC
Confidence 122234689999999999999976
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=167.76 Aligned_cols=226 Identities=19% Similarity=0.175 Sum_probs=154.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+++++||||+|+||++++++|+++|+.|++..+++. ......+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 1 ~~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06123 1 MRKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRR----QGGEALAVAADVADEADVLRLFEAVDR 76 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHh----CCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 7889999999999999999999999999887764432 22222222222 1346778999999999998887632
Q ss_pred ---CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHHc----C---CCeEEEecccccc-CCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAAH----G---CKNLVFSSSATAY-GWPKVVPC 141 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~~----~---~~~iv~~SS~~~y-g~~~~~~~ 141 (347)
.+|+|||+||...... ..+++...+++|+.++.++++++... + -++||++||...+ +.+
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----- 151 (248)
T PRK06123 77 ELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP----- 151 (248)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC-----
Confidence 5899999999753211 22334567999999999988876543 1 2379999997553 211
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.....|+.+|.+.+.+++.++.+. .+++++++||+.+++|.... . .....+....... ++.
T Consensus 152 ------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~-----~----~~~~~~~~~~~~~--p~~ 214 (248)
T PRK06123 152 ------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHAS-----G----GEPGRVDRVKAGI--PMG 214 (248)
T ss_pred ------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhc-----c----CCHHHHHHHHhcC--CCC
Confidence 112369999999999999887764 47999999999999973110 0 0111222222111 111
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
-+.+++|+++++.+++.... ....++.|++.++
T Consensus 215 ---------------~~~~~~d~a~~~~~l~~~~~-~~~~g~~~~~~gg 247 (248)
T PRK06123 215 ---------------RGGTAEEVARAILWLLSDEA-SYTTGTFIDVSGG 247 (248)
T ss_pred ---------------CCcCHHHHHHHHHHHhCccc-cCccCCEEeecCC
Confidence 12468999999999887522 2356789998765
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=168.41 Aligned_cols=223 Identities=20% Similarity=0.146 Sum_probs=156.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.....+. . ..++.++.+|++|.+++.+++++.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---L----GENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---c----CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999998875543332221 1 246778999999999887665432
Q ss_pred -CCcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||..... ...+.+...+++|+.++.++++++... ..+++|++||...+. +.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~-----------~~ 151 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ-----------SE 151 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC-----------CC
Confidence 589999999975321 122345678899999999999998642 235899999987642 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
.....|+.+|.+++.+++.++.++ .++++.+++||.+.++.+... ...++. ....... +
T Consensus 152 ~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~---------~~~~~~-~~~~~~~---~------- 211 (255)
T PRK05717 152 PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQR---------RAEPLS-EADHAQH---P------- 211 (255)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccc---------cchHHH-HHHhhcC---C-------
Confidence 234679999999999999998875 358999999999988632100 011111 1111110 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+.+.+|+++++.+++... .....++++.+.++.
T Consensus 212 ------~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 212 ------AGRVGTVEDVAAMVAWLLSRQ-AGFVTGQEFVVDGGM 247 (255)
T ss_pred ------CCCCcCHHHHHHHHHHHcCch-hcCccCcEEEECCCc
Confidence 112568999999998888642 123467788886654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=169.82 Aligned_cols=233 Identities=17% Similarity=0.142 Sum_probs=157.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||+++++.|+++|++|+++.|+.+..+...+.+....+ ...+.++.+|++|.+++.+++++.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK--SKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC--CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999999877665544444432111 234567789999999998887642
Q ss_pred -CCcEEEEccccccC-------CccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-------GESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -~~d~vih~a~~~~~-------~~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+|||||+.... ....+.....+++|+.++..+++++ ++.+.++||++||...+..+.. ...++.
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-~~~~~~ 160 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKF-EIYEGT 160 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccc-hhcccc
Confidence 38999999975321 0112234557788888877665554 4456679999999765432211 112333
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+......|+.+|.+.+.+.+.++.+. .++++++++||.++++. ...+...... ..
T Consensus 161 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~--------------~~~~~~~~~~-~~-------- 217 (256)
T PRK09186 161 SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ--------------PEAFLNAYKK-CC-------- 217 (256)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCC--------------CHHHHHHHHh-cC--------
Confidence 33334579999999999998887764 47899999999887641 0111121111 10
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++.+++.... ....++.+++.+|.
T Consensus 218 --------~~~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~~~~g~ 254 (256)
T PRK09186 218 --------NGKGMLDPDDICGTLVFLLSDQS-KYITGQNIIVDDGF 254 (256)
T ss_pred --------CccCCCCHHHhhhhHhheecccc-ccccCceEEecCCc
Confidence 01236899999999999997522 23457788877664
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=167.06 Aligned_cols=210 Identities=14% Similarity=0.143 Sum_probs=146.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KF 79 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~ 79 (347)
|+|+++||||+|+||+++++.|+++ ++|+++.|+....+...+. ..++.++.+|++|.+++.++++.. ++
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAE--------LPGATPFPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHH--------hccceEEecCCCCHHHHHHHHHhcCCC
Confidence 3579999999999999999999999 9999999875443222111 125778999999999999988754 59
Q ss_pred cEEEEccccccCCc----cccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 80 DAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 80 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
|+|||+||...... ..+.+...+++|+.+...+.+ ++++. .+++|++||...++ +..+..
T Consensus 73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~-----------~~~~~~ 140 (227)
T PRK08219 73 DVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLR-----------ANPGWG 140 (227)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcC-----------cCCCCc
Confidence 99999999754322 112334467888888555544 44444 45899999987764 223456
Q ss_pred chhhhHHHHHHHHHHHhhhcCC-ceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSDSE-WKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~-~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
.|+.+|.+.+.+++.++.+..+ +++..++||.+.++. ......+....
T Consensus 141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~------------------~~~~~~~~~~~------------- 189 (227)
T PRK08219 141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDM------------------QRGLVAQEGGE------------- 189 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchH------------------hhhhhhhhccc-------------
Confidence 8999999999999888766545 888888887765431 00111110000
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
.....+++++|++++++.++++ ...+.++++.
T Consensus 190 ~~~~~~~~~~dva~~~~~~l~~----~~~~~~~~~~ 221 (227)
T PRK08219 190 YDPERYLRPETVAKAVRFAVDA----PPDAHITEVV 221 (227)
T ss_pred cCCCCCCCHHHHHHHHHHHHcC----CCCCccceEE
Confidence 0123579999999999999976 2344666653
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=171.82 Aligned_cols=166 Identities=19% Similarity=0.177 Sum_probs=127.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|+++.|+.++.... . ..++.++.+|++|.+++.++++..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~----~------~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL----A------SLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----H------hCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999875543221 1 125788999999999998887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHH----HHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITL----LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l----~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+.++..+++|+.++..+ ++.+++.+.++||++||...+. +..
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~-----------~~~ 141 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI-----------YTP 141 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC-----------CCC
Confidence 6999999999764432 2344567889999886554 4556666677999999976431 222
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAH 188 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~ 188 (347)
....|+.+|.+.+.+++.++.+. .++++++++||.+.++.
T Consensus 142 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 183 (273)
T PRK06182 142 LGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEW 183 (273)
T ss_pred CccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCccccc
Confidence 33579999999999987776542 48999999999998763
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=167.18 Aligned_cols=221 Identities=18% Similarity=0.170 Sum_probs=158.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
++++||||+|+||+++++.|+++|++|++++|+.+..+...+. .+..++.+|++|.+++.++++.. ++|+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE---------TGCEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---------hCCeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 6899999999999999999999999999999876543322221 13567889999999988888743 4899
Q ss_pred EEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 82 VIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 82 vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
|||+||...... ..+.+...+++|+.++.++++++.+. + .++||++||...+. +..+...
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~~~ 149 (245)
T PRK07060 81 LVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV-----------GLPDHLA 149 (245)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC-----------CCCCCcH
Confidence 999999754322 22345567789999999998877653 2 36899999987653 2334568
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
|+.+|.++|.+++.++.++ .+++++++||+.++++..... +.. ......+.. .
T Consensus 150 y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~------~~~--~~~~~~~~~-~---------------- 204 (245)
T PRK07060 150 YCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEA------WSD--PQKSGPMLA-A---------------- 204 (245)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhh------ccC--HHHHHHHHh-c----------------
Confidence 9999999999999888764 379999999999998732100 000 001111111 0
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+++++|+++++..++.... ....++.+++.+|.
T Consensus 205 ~~~~~~~~~~d~a~~~~~l~~~~~-~~~~G~~~~~~~g~ 242 (245)
T PRK07060 205 IPLGRFAEVDDVAAPILFLLSDAA-SMVSGVSLPVDGGY 242 (245)
T ss_pred CCCCCCCCHHHHHHHHHHHcCccc-CCccCcEEeECCCc
Confidence 112347899999999999887632 23467888887653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=167.76 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=160.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||.+++++|+++|++|+++.|+... .......+.. .+.++.++.+|++|.+.+.+++++.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK----EGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh----cCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999887543 2222222221 2346778999999999988877642
Q ss_pred --CCcEEEEccccccCC-----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVG-----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||..... ...+.+...+++|+.++.++++++... ..++||++||...|.. ..
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~-----------~~ 190 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG-----------NE 190 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC-----------CC
Confidence 689999999964321 122344568999999999999988753 2358999999887742 22
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.++ .++++++++||.++.+... .. .....+.....
T Consensus 191 ~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~------~~---~~~~~~~~~~~-------------- 247 (290)
T PRK06701 191 TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIP------SD---FDEEKVSQFGS-------------- 247 (290)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccc------cc---cCHHHHHHHHh--------------
Confidence 23579999999999999998875 3899999999998876210 00 00111111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+.+++|+++++++++.... ....+.+|++.++.
T Consensus 248 ---~~~~~~~~~~~dva~~~~~ll~~~~-~~~~G~~i~idgg~ 286 (290)
T PRK06701 248 ---NTPMQRPGQPEELAPAYVFLASPDS-SYITGQMLHVNGGV 286 (290)
T ss_pred ---cCCcCCCcCHHHHHHHHHHHcCccc-CCccCcEEEeCCCc
Confidence 1112347889999999999887632 23467888887664
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=166.36 Aligned_cols=225 Identities=17% Similarity=0.184 Sum_probs=153.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+........+.+ +.++.++.+|++|.+++..+++..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-------GESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-------CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999988754333222221 346778899999988877665421
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEecccc-ccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSAT-AYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~-~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++... ...++|++||.. .|| ...
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~------------~~~ 146 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG------------MPN 146 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC------------CCC
Confidence 5899999999754322 23455678999999999999998752 234778777744 333 234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.+|.+.|.+++.++.+. .+++++++|||.+++|.....+ ....... +...+.... ++.
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~------- 212 (249)
T PRK06500 147 SSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLG-----LPEATLDAVAAQIQALV--PLG------- 212 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhc-----cCccchHHHHHHHHhcC--CCC-------
Confidence 5789999999999998887653 4899999999999987311100 0011111 222222211 111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
-+...+|+++++.+++.... ....+..+.+.++
T Consensus 213 --------~~~~~~~va~~~~~l~~~~~-~~~~g~~i~~~gg 245 (249)
T PRK06500 213 --------RFGTPEEIAKAVLYLASDES-AFIVGSEIIVDGG 245 (249)
T ss_pred --------CCcCHHHHHHHHHHHcCccc-cCccCCeEEECCC
Confidence 13578999999999886522 2345666766655
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=164.63 Aligned_cols=227 Identities=16% Similarity=0.161 Sum_probs=158.0
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++++||||+|+||+++++.|+++|+.|+++.|+... ...+..... .....++.++.+|+.|.+++.++++..
T Consensus 1 ~~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND--CAKDWFEEY-GFTEDQVRLKELDVTDTEECAEALAEIEEE 77 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHh-hccCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999887541 111111111 112346888999999999988877542
Q ss_pred --CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||..... ...+.+...+++|+.++.++.++ +++.+.++||++||...++ +.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~-----------~~ 146 (245)
T PRK12824 78 EGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLK-----------GQ 146 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhcc-----------CC
Confidence 589999999965322 23344566888999999888554 4555667999999987653 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.+|.+.+.+++.++.+. .++++++++|+.+.++... .+.+ ....... .. .
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~-----------~~~~~~~~~~~~-~~-~------- 206 (245)
T PRK12824 147 FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVE-----------QMGPEVLQSIVN-QI-P------- 206 (245)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchh-----------hcCHHHHHHHHh-cC-C-------
Confidence 234579999999999998887653 3789999999998876311 0111 1111111 11 1
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
...+...+|+++++.+++.... ....+++++++++..
T Consensus 207 --------~~~~~~~~~va~~~~~l~~~~~-~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 207 --------MKRLGTPEEIAAAVAFLVSEAA-GFITGETISINGGLY 243 (245)
T ss_pred --------CCCCCCHHHHHHHHHHHcCccc-cCccCcEEEECCCee
Confidence 1124568999999988875422 235689999988753
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=165.73 Aligned_cols=226 Identities=14% Similarity=0.108 Sum_probs=158.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+++++||||+|+||++++++|+++|++|+++.++.. ..+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH----GVRAEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999988765433 333333333332 447888999999999988777532
Q ss_pred ---CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
.+|+|||+||...... ..+.+...+++|+.++..+++++... + -++||++||.... .
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~-----------~ 145 (256)
T PRK12743 77 RLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH-----------T 145 (256)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc-----------C
Confidence 5899999999754321 23345668899999999999876643 1 3589999997542 2
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+..+...|+.+|.+.+.+++.++.+. .+++++.++||.+.+|... .. . .......... .+
T Consensus 146 ~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~-----~~--~---~~~~~~~~~~----~~---- 207 (256)
T PRK12743 146 PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNG-----MD--D---SDVKPDSRPG----IP---- 207 (256)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcccc-----cc--C---hHHHHHHHhc----CC----
Confidence 44566789999999999998887764 3799999999999986310 00 0 0011111110 11
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
-+ .+.+.+|+++++.+++... .....+.++.+.++.
T Consensus 208 -----~~----~~~~~~dva~~~~~l~~~~-~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 208 -----LG----RPGDTHEIASLVAWLCSEG-ASYTTGQSLIVDGGF 243 (256)
T ss_pred -----CC----CCCCHHHHHHHHHHHhCcc-ccCcCCcEEEECCCc
Confidence 01 1357899999999888652 223567888887664
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=164.17 Aligned_cols=228 Identities=16% Similarity=0.136 Sum_probs=158.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+++++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL----GIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999998765544333333221 34677899999999999776653
Q ss_pred CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc-----CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH-----GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~-----~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+|||+||...... ..+.+...+++|+.++.++++++... +.++||++||...+..... ..
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~-------~~ 160 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP-------EV 160 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc-------cc
Confidence 15899999999643222 22334567889999999999987654 5679999999766532110 11
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.+...|+.+|.+++.+++.+++++ .++.+.+++|+.+-.+.. ..+.+ +........ .+
T Consensus 161 ~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~-----------~~~~~~~~~~~~~~~--~~------ 221 (259)
T PRK08213 161 MDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMT-----------RGTLERLGEDLLAHT--PL------ 221 (259)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcch-----------hhhhHHHHHHHHhcC--CC------
Confidence 345789999999999999988764 378999999987765421 11222 222222211 11
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..+...+|+++++.+++... .....|+.+++.++.
T Consensus 222 ---------~~~~~~~~va~~~~~l~~~~-~~~~~G~~~~~~~~~ 256 (259)
T PRK08213 222 ---------GRLGDDEDLKGAALLLASDA-SKHITGQILAVDGGV 256 (259)
T ss_pred ---------CCCcCHHHHHHHHHHHhCcc-ccCccCCEEEECCCe
Confidence 12346899999988888652 223567888876553
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=164.89 Aligned_cols=225 Identities=19% Similarity=0.193 Sum_probs=157.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|+++.|+. . .. ...++.++.+|+.|.+++.+++++.
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--~-------~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--L-------TQ----EDYPFATFVLDVSDAAAVAQVCQRLLAETG 75 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--h-------hh----cCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999998865 0 00 1346788999999999999887642
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... +.+.+...+++|+.++..+++++.. .+.++||++||.... .+..+
T Consensus 76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~-----------~~~~~ 144 (252)
T PRK08220 76 PLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH-----------VPRIG 144 (252)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhc-----------cCCCC
Confidence 4899999999754332 2334566889999999999888653 345689999997653 23445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++.+. .++++++++||.+++|...............+.........
T Consensus 145 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 209 (252)
T PRK08220 145 MAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKL--------------- 209 (252)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhh---------------
Confidence 6789999999999999888763 38999999999999873211100000000000000011111
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+++++|+|+++++++... .....++++.+.+|.
T Consensus 210 --~~~~~~~~~~~dva~~~~~l~~~~-~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 210 --GIPLGKIARPQEIANAVLFLASDL-ASHITLQDIVVDGGA 248 (252)
T ss_pred --cCCCcccCCHHHHHHHHHHHhcch-hcCccCcEEEECCCe
Confidence 112235789999999999988652 224566777777664
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=164.34 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=160.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++|+||||+|+||++++++|+++|++|++++|+....+.....+... +.++.++.+|++|.+++.++++..
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999999999999988766554444443322 346778899999999988776532
Q ss_pred -CCcEEEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++||++||.... .+..+
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-----------~~~~~ 155 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE-----------NKNIN 155 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc-----------CCCCC
Confidence 5899999999654322 2234455689999999999998763 344599999997653 13345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.+|.+.+.+++.++.+. .+++++++.||.+-.+.. ...+.+ +..+..... .
T Consensus 156 ~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~----------~~~~~~~~~~~~~~~~--~--------- 214 (255)
T PRK06113 156 MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDAL----------KSVITPEIEQKMLQHT--P--------- 214 (255)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccc----------ccccCHHHHHHHHhcC--C---------
Confidence 5689999999999999887764 468899999988765410 011112 122222110 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
...+...+|+++++.+++... .....++++++.++..
T Consensus 215 ------~~~~~~~~d~a~~~~~l~~~~-~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 215 ------IRRLGQPQDIANAALFLCSPA-ASWVSGQILTVSGGGV 251 (255)
T ss_pred ------CCCCcCHHHHHHHHHHHcCcc-ccCccCCEEEECCCcc
Confidence 112568899999999988642 2235688999987753
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=168.23 Aligned_cols=226 Identities=16% Similarity=0.122 Sum_probs=157.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
++++||||+|+||++++++|+++|++|++..|+... .+...+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE----CGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH----cCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999988765432 2222222222 2346778899999999888776532
Q ss_pred --CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++||+||.... ..+.+++...+++|+.++..+++++... .-++||++||...+. +..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~-----------~~~ 194 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ-----------PSP 194 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc-----------CCC
Confidence 58999999996321 1233456778999999999999887653 235899999988763 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .++++.+++||++.+|.... ... .......... . .+
T Consensus 195 ~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~-----~~~---~~~~~~~~~~-~-~~--------- 255 (294)
T PRK07985 195 HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQIS-----GGQ---TQDKIPQFGQ-Q-TP--------- 255 (294)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccc-----cCC---CHHHHHHHhc-c-CC---------
Confidence 34679999999999999888774 38999999999999873100 000 0011111111 1 00
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+|+++.+++... .....++++.+.+|.
T Consensus 256 ------~~r~~~pedva~~~~fL~s~~-~~~itG~~i~vdgG~ 291 (294)
T PRK07985 256 ------MKRAGQPAELAPVYVYLASQE-SSYVTAEVHGVCGGE 291 (294)
T ss_pred ------CCCCCCHHHHHHHHHhhhChh-cCCccccEEeeCCCe
Confidence 112457899999999998752 224567888887764
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=167.87 Aligned_cols=236 Identities=15% Similarity=0.120 Sum_probs=160.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|+.|+++.|+.... ...+.+... +.++.++.+|+++.+++.+++++.
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL----QPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999998876654 333333222 346888999999999998877642
Q ss_pred -CCcEEEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHHH---cCCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMAA---HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~~---~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+|||+||...... ..+.+...+++|+.++.++.+.+.. .+.++||++||...+. +..+.
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-----------~~~~~ 150 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT-----------GQGGT 150 (258)
T ss_pred CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc-----------CCCCC
Confidence 5899999999643211 1234556788999999998887653 2346899999977642 23345
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.+|.+.+.+++.++.+. .+++++.++||.+++|..... ...... .......... . ++
T Consensus 151 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~---~~~~~~-~~~~~~~~~~-~---~~--------- 213 (258)
T PRK08628 151 SGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENW---IATFDD-PEAKLAAITA-K---IP--------- 213 (258)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHH---hhhccC-HHHHHHHHHh-c---CC---------
Confidence 789999999999999887653 479999999999998621000 000000 0001111111 0 00
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
.+ ..++..+|+++++.+++.... ....++.+.+.++. ..+++
T Consensus 214 ~~---~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~~~gg~-~~~~~ 255 (258)
T PRK08628 214 LG---HRMTTAEEIADTAVFLLSERS-SHTTGQWLFVDGGY-VHLDR 255 (258)
T ss_pred cc---ccCCCHHHHHHHHHHHhChhh-ccccCceEEecCCc-ccccc
Confidence 01 135788999999999887622 23456778776554 44433
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-21 Score=167.35 Aligned_cols=233 Identities=14% Similarity=0.097 Sum_probs=156.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|+++.|+.... ...++.++.+|+.|.+++.++++..
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~-------------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD-------------LPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh-------------cCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999875421 1235778999999999888765432
Q ss_pred -CCcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||..... ...+.+...+++|+.++.++.+++ ++.+.++||++||...+.. .
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~----------~ 145 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP----------L 145 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC----------C
Confidence 589999999954211 123455678899999998776654 4445568999999876521 1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCC-CCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGED-PRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
..+...|+.+|.+.+.+++.++.++ .++++.+++||.+..|........ ..............+..... ..
T Consensus 146 ~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----- 219 (260)
T PRK06523 146 PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLG-GI----- 219 (260)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhc-cC-----
Confidence 1245789999999999999887764 379999999999988631100000 00000000000011100000 00
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
....+...+|+++++.+++... .....++.+.+.++..+|
T Consensus 220 --------p~~~~~~~~~va~~~~~l~s~~-~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 220 --------PLGRPAEPEEVAELIAFLASDR-AASITGTEYVIDGGTVPT 259 (260)
T ss_pred --------ccCCCCCHHHHHHHHHHHhCcc-cccccCceEEecCCccCC
Confidence 1112457899999999988652 224567899998876554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=163.20 Aligned_cols=225 Identities=18% Similarity=0.159 Sum_probs=160.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (347)
|+++||||+|+||+++++.|+++|++|++++|++.......+.+... ..++.++.+|++|.+++.++++. .
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999988766554444443322 34688899999999999888753 2
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.....++.|+.++.++++++... +.+++|++||...+. +...
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 152 (250)
T PRK12939 84 GLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW-----------GAPK 152 (250)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-----------CCCC
Confidence 6999999999754322 22334556788999999998876542 345999999976642 2233
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++.++ .++.+++++||.+..+.... ... ..+.......
T Consensus 153 ~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~-------~~~--~~~~~~~~~~-------------- 209 (250)
T PRK12939 153 LGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAY-------VPA--DERHAYYLKG-------------- 209 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccc-------cCC--hHHHHHHHhc--------------
Confidence 4679999999999999887653 47899999999887652100 000 0111111111
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+++++|+++++..++.... ....|+.+++.++.
T Consensus 210 ---~~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~i~~~gg~ 247 (250)
T PRK12939 210 ---RALERLQVPDDVAGAVLFLLSDAA-RFVTGQLLPVNGGF 247 (250)
T ss_pred ---CCCCCCCCHHHHHHHHHHHhCccc-cCccCcEEEECCCc
Confidence 122346889999999999987622 23567888887663
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=166.35 Aligned_cols=232 Identities=20% Similarity=0.174 Sum_probs=159.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|+.|.+++..+++..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA----GGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999998765554444444322 346788999999999888776532
Q ss_pred CCcEEEEccccccCCc-------------------cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccC
Q 040584 78 KFDAVIHFAGLKAVGE-------------------SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~-------------------~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg 134 (347)
++|+|||+||...... ..+.+...+++|+.++..+++++ ++.+.++||++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 166 (278)
T PRK08277 87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT 166 (278)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC
Confidence 6999999999543211 12334567888999988766543 344556999999988763
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc
Q 040584 135 WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV 212 (347)
Q Consensus 135 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (347)
+......|+.+|.+.+.+++.++.++ .++++.+++||.+..+..........+ ...........
T Consensus 167 -----------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~---~~~~~~~~~~~ 232 (278)
T PRK08277 167 -----------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDG---SLTERANKILA 232 (278)
T ss_pred -----------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccc---cchhHHHHHhc
Confidence 34456789999999999999988875 379999999999987632111000000 00001111111
Q ss_pred CCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 213 GRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. ....-+...+|+|+++.+++.........++.+.+.+|.
T Consensus 233 -~----------------~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG~ 272 (278)
T PRK08277 233 -H----------------TPMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGGF 272 (278)
T ss_pred -c----------------CCccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCCe
Confidence 0 011225678999999998776411224567888886663
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-21 Score=165.91 Aligned_cols=167 Identities=19% Similarity=0.288 Sum_probs=128.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+|+||||+|+||.++++.|+++|++|++++|+....+.....+ +.++.++.+|++|.+++.++++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 73 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-------GDNLYIAQLDVRNRAAIEEMLASLPAEWR 73 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------ccceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999998765433322211 236788999999999988877532
Q ss_pred CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||.... ..+.+.+...+++|+.++..+++.+ ++.+.+++|++||...+ .+..
T Consensus 74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-----------~~~~ 142 (248)
T PRK10538 74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS-----------WPYA 142 (248)
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC-----------CCCC
Confidence 59999999996421 1133445668899999977666554 44566799999997654 1334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
+...|+.+|.+.+.+.+.++.+. .++.+++++||.+.|+
T Consensus 143 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~ 183 (248)
T PRK10538 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGT 183 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeeccc
Confidence 55789999999999999887764 4799999999998875
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=169.79 Aligned_cols=166 Identities=19% Similarity=0.248 Sum_probs=128.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++|+||||+|+||+++++.|+++|++|++++|+....... .. .++.++.+|++|.+++.++++..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l----~~------~~~~~~~~Dl~d~~~~~~~~~~~~~~ 72 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL----EA------EGLEAFQLDYAEPESIAALVAQVLEL 72 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HH------CCceEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999875543322 11 25778899999999888776532
Q ss_pred ---CCcEEEEccccccCCccc----cCcchhhhhhhhH----HHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTG----TITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~----~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||........ +.....+++|+.+ +..+++.+++.+.++||++||...+. +
T Consensus 73 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~-----------~ 141 (277)
T PRK05993 73 SGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV-----------P 141 (277)
T ss_pred cCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC-----------C
Confidence 589999999976543322 2335578899999 55566667777778999999976542 3
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
..+...|+.+|.+.+.+++.++.+. .++++++++||.+-.+
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 142 MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 4456789999999999998876543 4899999999987654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=163.95 Aligned_cols=227 Identities=18% Similarity=0.125 Sum_probs=158.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||.++++.|+++|++|++++|+..+.+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE----GGEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999876655544444332 346788999999999988877632
Q ss_pred CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||.... .. ..+.+...+++|+.++..++++ +++.+.++||++||...+.. +..
T Consensus 83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~----------~~~ 152 (254)
T PRK07478 83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA----------GFP 152 (254)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc----------CCC
Confidence 69999999996432 11 2234567889999888877554 44455668999999866521 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.||.+.+.+++.++.+. .++.+.+++||.+-.+-.. .. . ..+..........
T Consensus 153 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~---~--~~~~~~~~~~~~~----------- 212 (254)
T PRK07478 153 GMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGR----AM---G--DTPEALAFVAGLH----------- 212 (254)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccc----cc---c--CCHHHHHHHHhcC-----------
Confidence 45689999999999999988875 3699999999988654110 00 0 0011111111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++++++.... ....|+++.+.++.
T Consensus 213 -----~~~~~~~~~~va~~~~~l~s~~~-~~~~G~~~~~dgg~ 249 (254)
T PRK07478 213 -----ALKRMAQPEEIAQAALFLASDAA-SFVTGTALLVDGGV 249 (254)
T ss_pred -----CCCCCcCHHHHHHHHHHHcCchh-cCCCCCeEEeCCch
Confidence 01124678999999999886522 23567888876654
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=162.41 Aligned_cols=222 Identities=17% Similarity=0.114 Sum_probs=154.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++||||+|+||+++++.|+++|++|+++.|++.. .......+.. ...++..+.+|++|.+++.+++++.
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGA----LGGKALAVQGDVSDAESVERAVDEAKAEF 81 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh----cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999888776543 2222222221 2456788899999999988877632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccc-cCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATA-YGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~-yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++... +.++||++||... +| .
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~------------~ 149 (248)
T PRK05557 82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMG------------N 149 (248)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcC------------C
Confidence 5899999999754322 22334567888999999998877643 4568999999643 32 2
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.+|.+.+.+++.++++. .++.+++++|+.+.++.. ..+.+ .........
T Consensus 150 ~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~-----------~~~~~~~~~~~~~~~---------- 208 (248)
T PRK05557 150 PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMT-----------DALPEDVKEAILAQI---------- 208 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccc-----------cccChHHHHHHHhcC----------
Confidence 235679999999999888776653 378999999988765421 01111 122222111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+++++..++... .....++.|+++++.
T Consensus 209 -------~~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~i~~~~ 245 (248)
T PRK05557 209 -------PLGRLGQPEEIASAVAFLASDE-AAYITGQTLHVNGGM 245 (248)
T ss_pred -------CCCCCcCHHHHHHHHHHHcCcc-cCCccccEEEecCCc
Confidence 1123578999999998877652 223567899997663
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=163.55 Aligned_cols=227 Identities=18% Similarity=0.128 Sum_probs=154.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
+|+++||||+|+||++++++|+++|++|++.. |+..........+... +.....+.+|+++.+++..+++.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN----GGSAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhc----CCceEEEecccCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998865 3333333333333321 34567788999998877655432
Q ss_pred -------CCCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCC
Q 040584 77 -------TKFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 77 -------~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
.++|+||||||....... .+.++..+++|+.++..+++++... ..++||++||...+.
T Consensus 80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 150 (252)
T PRK12747 80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--------- 150 (252)
T ss_pred hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc---------
Confidence 159999999996533222 2234667889999999998876653 235999999987652
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+......|+.||.+++.+++.++.++ .++++.++.||.+.++..... ... +.........
T Consensus 151 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~------~~~---~~~~~~~~~~------- 212 (252)
T PRK12747 151 --SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAEL------LSD---PMMKQYATTI------- 212 (252)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhc------ccC---HHHHHHHHhc-------
Confidence 33345689999999999999887764 479999999999887621000 000 1111111100
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+.+.+|+++++.+++.. ......++.+.+.+|.
T Consensus 213 ---------~~~~~~~~~~dva~~~~~l~s~-~~~~~~G~~i~vdgg~ 250 (252)
T PRK12747 213 ---------SAFNRLGEVEDIADTAAFLASP-DSRWVTGQLIDVSGGS 250 (252)
T ss_pred ---------CcccCCCCHHHHHHHHHHHcCc-cccCcCCcEEEecCCc
Confidence 0112367899999999988764 2223567888887664
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=164.00 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=157.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||.++++.|+++|++|++++|+....+...+.+... +.++.++.+|+++.+++.++++..
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA----GRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999765544444433321 346788899999999998877632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH-----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA-----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~-----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.+++|++||..... +.
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~ 154 (263)
T PRK07814 86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL-----------AG 154 (263)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-----------CC
Confidence 6899999999643322 2344567889999999999998864 3456899999975431 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
.+...|+.+|.+++.+++.++.+. +.+.+++++||.+..+... .. ..- ..+.....+..
T Consensus 155 ~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~-------~~-~~~-~~~~~~~~~~~----------- 214 (263)
T PRK07814 155 RGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALE-------VV-AAN-DELRAPMEKAT----------- 214 (263)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhh-------hc-cCC-HHHHHHHHhcC-----------
Confidence 456789999999999999888764 3578889999887653100 00 000 01111111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
........+|+++++++++.... ....++.+.+.++
T Consensus 215 -----~~~~~~~~~~va~~~~~l~~~~~-~~~~g~~~~~~~~ 250 (263)
T PRK07814 215 -----PLRRLGDPEDIAAAAVYLASPAG-SYLTGKTLEVDGG 250 (263)
T ss_pred -----CCCCCcCHHHHHHHHHHHcCccc-cCcCCCEEEECCC
Confidence 01124578999999999886522 2346677777554
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=162.49 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=156.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.. ....+.+... +.++..+.+|+++.+++.++++..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL----GRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999999999999988642 2222333222 346788999999999998776532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.++..+++|+.++.++++++.. .+ .+++|++||...+.. .
T Consensus 79 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------~ 147 (248)
T TIGR01832 79 GHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQG-----------G 147 (248)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccC-----------C
Confidence 5999999999754322 2234556788999999999887653 23 458999999887642 2
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++++. .++++++++||.+..+... .... ........... .
T Consensus 148 ~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~-------~~~~--~~~~~~~~~~~---~------- 208 (248)
T TIGR01832 148 IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQ-------ALRA--DEDRNAAILER---I------- 208 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchh-------cccc--ChHHHHHHHhc---C-------
Confidence 234579999999999999998875 3799999999998865210 0000 00000111111 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....++..+|+|+++.+++.... ....++++.+.++
T Consensus 209 ------~~~~~~~~~dva~~~~~l~s~~~-~~~~G~~i~~dgg 244 (248)
T TIGR01832 209 ------PAGRWGTPDDIGGPAVFLASSAS-DYVNGYTLAVDGG 244 (248)
T ss_pred ------CCCCCcCHHHHHHHHHHHcCccc-cCcCCcEEEeCCC
Confidence 11247889999999999886522 2345677766554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=160.50 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=131.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (347)
|+|+||||+|+||+++++.|+++|++|++++|+....+.....+... +.++.++.+|+.|.+++.++++. .
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA----GGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999998766555444444322 44678899999999988887753 1
Q ss_pred CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||........ +..+..+++|+.++..+.+. +++.+.++||++||...+. +...
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~-----------~~~~ 145 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM-----------QGPA 145 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC-----------CCCC
Confidence 599999999975543322 23344678898888876665 4556677999999987653 3344
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
...|+.+|.+.+.+.+.++.+. .++++++++|+.+..+
T Consensus 146 ~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 185 (270)
T PRK05650 146 MSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTN 185 (270)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccC
Confidence 5789999999999988887774 3789999999998876
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=161.74 Aligned_cols=227 Identities=17% Similarity=0.122 Sum_probs=159.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+........+++... +.++..+.+|++|.+++.++++..
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE----GIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc----CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999998866555444444332 335778899999999988877531
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+++...+++|+.++..+++++.. .+.++||++||.... .+..
T Consensus 85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-----------~~~~ 153 (254)
T PRK08085 85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSE-----------LGRD 153 (254)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhc-----------cCCC
Confidence 5899999999653322 2334556889999999988887654 345699999997543 1234
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .++++.+++||.+..+..... .. .+..........
T Consensus 154 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~-------~~--~~~~~~~~~~~~----------- 213 (254)
T PRK08085 154 TITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKAL-------VE--DEAFTAWLCKRT----------- 213 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhh-------cc--CHHHHHHHHhcC-----------
Confidence 45789999999999999988774 379999999999887621100 00 011111111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++.+++... .....++++.+.+|.
T Consensus 214 -----p~~~~~~~~~va~~~~~l~~~~-~~~i~G~~i~~dgg~ 250 (254)
T PRK08085 214 -----PAARWGDPQELIGAAVFLSSKA-SDFVNGHLLFVDGGM 250 (254)
T ss_pred -----CCCCCcCHHHHHHHHHHHhCcc-ccCCcCCEEEECCCe
Confidence 1123668899999999888752 234567777776654
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-21 Score=164.82 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=159.2
Q ss_pred EEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcEEEE
Q 040584 6 LVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDAVIH 84 (347)
Q Consensus 6 lItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~vih 84 (347)
+||||+|+||+++++.|+++|++|+++.|+........+.+. .+.++.++.+|++|.+++.++++.. ++|++||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~ 75 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG-----GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVI 75 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEE
Confidence 699999999999999999999999999987554333222221 1346788999999999999998754 4799999
Q ss_pred ccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 85 FAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 85 ~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+||...... ..+.+...+++|+.++.+++++....+.++||++||...+. +..+.+.|+.+|.+.
T Consensus 76 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~-----------~~~~~~~Y~~sK~a~ 144 (230)
T PRK07041 76 TAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR-----------PSASGVLQGAINAAL 144 (230)
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC-----------CCCcchHHHHHHHHH
Confidence 999754322 23455678899999999999966555567999999988763 334567899999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
+.+++.++.+..++++++++|+.+-.+.... .. ......+...... . ++ ...+...+
T Consensus 145 ~~~~~~la~e~~~irv~~i~pg~~~t~~~~~---~~---~~~~~~~~~~~~~-~---~~-------------~~~~~~~~ 201 (230)
T PRK07041 145 EALARGLALELAPVRVNTVSPGLVDTPLWSK---LA---GDAREAMFAAAAE-R---LP-------------ARRVGQPE 201 (230)
T ss_pred HHHHHHHHHHhhCceEEEEeecccccHHHHh---hh---ccchHHHHHHHHh-c---CC-------------CCCCcCHH
Confidence 9999999888767889999998775541000 00 0000111111111 1 00 01134679
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
|+|+++..++.. ....+++|++.++.++
T Consensus 202 dva~~~~~l~~~---~~~~G~~~~v~gg~~~ 229 (230)
T PRK07041 202 DVANAILFLAAN---GFTTGSTVLVDGGHAI 229 (230)
T ss_pred HHHHHHHHHhcC---CCcCCcEEEeCCCeec
Confidence 999999998875 3456789999877643
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=164.36 Aligned_cols=233 Identities=15% Similarity=0.080 Sum_probs=152.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHH-HHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKV-KELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+++||||+|+||.++++.|+++|++|+++.++........+.+ ..+. ..+.++.++.+|++|.+++.++++..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 87 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVK-AAGAKAVAFQADLTTAAAVEKLFDDAKAAF 87 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHH-HhCCcEEEEecCcCCHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999777765443222111111 1111 11346788999999999998877632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+|||+||...... ..+.++..+++|+.++..+++++... ..+++++++|..+.. +....
T Consensus 88 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~-----------~~~~~ 156 (257)
T PRK12744 88 GRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA-----------FTPFY 156 (257)
T ss_pred CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc-----------cCCCc
Confidence 6899999999643222 23345668899999999999887653 124677664333221 11234
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.+|.+.|.+++.++++. .++++++++||.+.++..... .... .. ..... ... .
T Consensus 157 ~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~-----~~~~----~~---~~~~~-~~~--~------ 215 (257)
T PRK12744 157 SAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQ-----EGAE----AV---AYHKT-AAA--L------ 215 (257)
T ss_pred ccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccc-----cccc----hh---hcccc-ccc--c------
Confidence 689999999999999998875 269999999999876521100 0000 00 00000 000 0
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.......+.+++|+++++.+++.. .....++++++.++..
T Consensus 216 ~~~~~~~~~~~~dva~~~~~l~~~--~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 216 SPFSKTGLTDIEDIVPFIRFLVTD--GWWITGQTILINGGYT 255 (257)
T ss_pred cccccCCCCCHHHHHHHHHHhhcc--cceeecceEeecCCcc
Confidence 011112477899999999999885 1234678999877643
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=163.87 Aligned_cols=224 Identities=14% Similarity=0.118 Sum_probs=154.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.... .++.++.+|++|++++.++++..
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~---------------~~~~~~~~D~~~~~~i~~~~~~~~~~~ 70 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY---------------NDVDYFKVDVSNKEQVIKGIDYVISKY 70 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc---------------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999998875432 25778999999999988877642
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||....... .+.+...+++|+.++..+++++.. .+.++||++||...+. +..
T Consensus 71 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 139 (258)
T PRK06398 71 GRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA-----------VTR 139 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc-----------CCC
Confidence 59999999997543322 234456789999999988877653 3456999999987653 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCC-CCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGI-PNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+.+.++.+. .++++.+++||.+-.+-.........+. ............ .
T Consensus 140 ~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------ 205 (258)
T PRK06398 140 NAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWG--E------------ 205 (258)
T ss_pred CCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhh--h------------
Confidence 56789999999999999998875 2489999999987654210000000000 000000011100 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+...+|+++++.+++.... ....++++.+.+|.
T Consensus 206 ---~~~~~~~~~p~eva~~~~~l~s~~~-~~~~G~~i~~dgg~ 244 (258)
T PRK06398 206 ---MHPMKRVGKPEEVAYVVAFLASDLA-SFITGECVTVDGGL 244 (258)
T ss_pred ---cCCcCCCcCHHHHHHHHHHHcCccc-CCCCCcEEEECCcc
Confidence 0111235678999999998886522 23567788887664
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=162.76 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=153.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+++||||+|+||+++++.|+++|++|+++.++.. ..+.... .. ..++.++.+|++|.+++.+++++.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~---~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALAD---EL----GDRAIALQADVTDREQVQAMFATATEHF 78 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH---Hh----CCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999987655332 2221111 11 246788999999999988887642
Q ss_pred -C-CcEEEEccccccC----------CccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCC
Q 040584 78 -K-FDAVIHFAGLKAV----------GESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 78 -~-~d~vih~a~~~~~----------~~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~ 141 (347)
+ +|+|||+||.... ..+.+.+...+++|+.++.++++++.. .+.+++|++||....
T Consensus 79 g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~-------- 150 (253)
T PRK08642 79 GKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ-------- 150 (253)
T ss_pred CCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc--------
Confidence 2 8999999985311 012233456789999999999988753 345699999986432
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.+..+...|+.+|.+.+.+++.+++++ .++.+.+++||.+-.+... ....+......... .
T Consensus 151 ---~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~----------~~~~~~~~~~~~~~---~- 213 (253)
T PRK08642 151 ---NPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDAS----------AATPDEVFDLIAAT---T- 213 (253)
T ss_pred ---CCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhh----------ccCCHHHHHHHHhc---C-
Confidence 234456789999999999999998874 4789999999887654210 00111111111111 1
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+.+.+|+++++.+++.... ....|+.+.+.++.
T Consensus 214 ------------~~~~~~~~~~va~~~~~l~~~~~-~~~~G~~~~vdgg~ 250 (253)
T PRK08642 214 ------------PLRKVTTPQEFADAVLFFASPWA-RAVTGQNLVVDGGL 250 (253)
T ss_pred ------------CcCCCCCHHHHHHHHHHHcCchh-cCccCCEEEeCCCe
Confidence 11236889999999999997522 34677888887653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=161.34 Aligned_cols=220 Identities=19% Similarity=0.151 Sum_probs=156.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||..+++.|+++|+.|++++|+..+.....+.+... +.++..+.+|++|.+++.++++..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL----GTEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999998765544444333322 346788999999999888776642
Q ss_pred CCcEEEEccccccCC-------------ccccCcchhhhhhhhHHHHHHHHHH----Hc-CCCeEEEeccccccCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG-------------ESVQKPLPYFDNNLTGTITLLEVMA----AH-GCKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 78 ~~d~vih~a~~~~~~-------------~~~~~~~~~~~~nv~~~~~l~~~~~----~~-~~~~iv~~SS~~~yg~~~~~ 139 (347)
++|+|||+||..... .+.+.+...+++|+.++..+.+++. +. .-.++|++||...||.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~---- 157 (253)
T PRK08217 82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN---- 157 (253)
T ss_pred CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC----
Confidence 589999999964321 1122334577889999987766443 22 2347999999876642
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCC
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRP 216 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 216 (347)
.+...|+.+|.+.+.+++.++.+. .+++++.++|+.+.++.. ..+.+ .........
T Consensus 158 --------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~-----------~~~~~~~~~~~~~~~-- 216 (253)
T PRK08217 158 --------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMT-----------AAMKPEALERLEKMI-- 216 (253)
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccc-----------cccCHHHHHHHHhcC--
Confidence 235679999999999999887653 489999999999987621 11112 222222111
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+.+++|+++++..++.. ....+++|+++++-
T Consensus 217 ---------------~~~~~~~~~~~a~~~~~l~~~---~~~~g~~~~~~gg~ 251 (253)
T PRK08217 217 ---------------PVGRLGEPEEIAHTVRFIIEN---DYVTGRVLEIDGGL 251 (253)
T ss_pred ---------------CcCCCcCHHHHHHHHHHHHcC---CCcCCcEEEeCCCc
Confidence 112356899999999999865 34577899997764
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=161.14 Aligned_cols=227 Identities=22% Similarity=0.218 Sum_probs=158.2
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIH 84 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (347)
|+|+||||.+|+.+++.|++.+++|+++.|+.++. ....+.. .+++.+.+|+.|.+++.++++ ++|+||.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~--~~~~l~~------~g~~vv~~d~~~~~~l~~al~--g~d~v~~ 70 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSD--RAQQLQA------LGAEVVEADYDDPESLVAALK--GVDAVFS 70 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHH--HHHHHHH------TTTEEEES-TT-HHHHHHHHT--TCSEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchh--hhhhhhc------ccceEeecccCCHHHHHHHHc--CCceEEe
Confidence 79999999999999999999999999999987432 2233333 367889999999999999999 7999998
Q ss_pred ccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHH
Q 040584 85 FAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEIC 164 (347)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~ 164 (347)
+.+... ...+....+++++|++.|+++||+.|-...+. +.....|..++-..|...|+.+
T Consensus 71 ~~~~~~------------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~--------~~~~~~p~~~~~~~k~~ie~~l 130 (233)
T PF05368_consen 71 VTPPSH------------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYD--------ESSGSEPEIPHFDQKAEIEEYL 130 (233)
T ss_dssp ESSCSC------------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTT--------TTTTSTTHHHHHHHHHHHHHHH
T ss_pred ecCcch------------hhhhhhhhhHHHhhhccccceEEEEEeccccc--------ccccccccchhhhhhhhhhhhh
Confidence 876432 11345567899999999999998644433321 1111223334456788888888
Q ss_pred HHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHH--HcCCCCceEEecccCCCCCCceeeeee-eHHH
Q 040584 165 RDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQV--AVGRRPALTVFGTDYSTKDGTVVRDYI-HVVD 241 (347)
Q Consensus 165 ~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~i-~v~D 241 (347)
++ .+++++++|++..+.. +....... .......+.+++ +++....++ +.+|
T Consensus 131 ~~-----~~i~~t~i~~g~f~e~---------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~D 184 (233)
T PF05368_consen 131 RE-----SGIPYTIIRPGFFMEN---------------LLPPFAPVVDIKKSKDVVTLPG------PGNQKAVPVTDTRD 184 (233)
T ss_dssp HH-----CTSEBEEEEE-EEHHH---------------HHTTTHHTTCSCCTSSEEEEET------TSTSEEEEEEHHHH
T ss_pred hh-----ccccceeccccchhhh---------------hhhhhcccccccccceEEEEcc------CCCccccccccHHH
Confidence 65 2899999999976642 11111111 111111345555 566566665 9999
Q ss_pred HHHHHHHHHHhcCCCCC-CCeeEEccCCCcccHHHHHHHHHHHhCCCCCc
Q 040584 242 LADGHIAALRKLDDPKV-GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 290 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~-~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~ 290 (347)
+++++..++..+.. . .++.+.+++ +.+|..|+++.+.+.+|++..+
T Consensus 185 vg~~va~il~~p~~--~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 185 VGRAVAAILLDPEK--HNNGKTIFLAG-ETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp HHHHHHHHHHSGGG--TTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcChHH--hcCCEEEEeCC-CCCCHHHHHHHHHHHHCCccEE
Confidence 99999999988322 3 467887754 7899999999999999987643
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=161.40 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=157.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||.+++++|+++|++|+++.|+...... ... . ....+..+.+|+++.+++.+++++.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~-~~~---~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEV-AAQ---L---LGGNAKGLVCDVSDSQSVEAAVAAVISAF 87 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHH---h---hCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999987543221 111 1 1235668899999999988877642
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||....... .+.+...+++|+.++.++++++.. .+.++||++||..... +..
T Consensus 88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~ 156 (255)
T PRK06841 88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV-----------ALE 156 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc-----------CCC
Confidence 58999999997543222 233455889999999999888764 3567999999976531 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.++ .++.+.+++||.+..+... .... ..........
T Consensus 157 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~------~~~~---~~~~~~~~~~------------- 214 (255)
T PRK06841 157 RHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGK------KAWA---GEKGERAKKL------------- 214 (255)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccc------cccc---hhHHHHHHhc-------------
Confidence 34679999999999999888774 3799999999988765210 0000 0011111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+.+.+|+++++++++.... ....|+++.+.+|.
T Consensus 215 ----~~~~~~~~~~~va~~~~~l~~~~~-~~~~G~~i~~dgg~ 252 (255)
T PRK06841 215 ----IPAGRFAYPEEIAAAALFLASDAA-AMITGENLVIDGGY 252 (255)
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCccc-cCccCCEEEECCCc
Confidence 112246789999999999987522 23567888887664
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=166.91 Aligned_cols=171 Identities=18% Similarity=0.137 Sum_probs=130.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+|+||||+|+||+++++.|+++|++|++++|+........+.+.. ..++.++.+|++|.+++.+++++.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 75 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-----AARVSVYAADVRDADALAAAAADFIAA 75 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-----CCeeEEEEcCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999876544332222211 126788999999999998876532
Q ss_pred --CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
.+|+|||+||...... ..+.+...+++|+.++..+++ .+++.+.++||++||...+. +
T Consensus 76 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~-----------~ 144 (257)
T PRK07024 76 HGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR-----------G 144 (257)
T ss_pred CCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC-----------C
Confidence 4899999999753221 123456788999999998776 45555667999999976541 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
......|+.+|.+.+.+++.++.+. .++++++++||.+.++
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 187 (257)
T PRK07024 145 LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTP 187 (257)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCc
Confidence 2345679999999999998876543 4899999999999875
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=163.64 Aligned_cols=169 Identities=22% Similarity=0.252 Sum_probs=127.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+++++||||+|+||+++++.|+++|++|+++.|+........+.... ...++.++.+|+.|.+++.+++.. ++|
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~-~id 75 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAAR----RGLALRVEKLDLTDAIDRAQAAEW-DVD 75 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcceEEEeeCCCHHHHHHHhcC-CCC
Confidence 788999999999999999999999999999999875543332222222 234678899999999999988865 699
Q ss_pred EEEEccccccCCccc----cCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 81 AVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 81 ~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
+||||||........ +.....+++|+.++.++.+. +++.+.++||++||...+. +......
T Consensus 76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~-----------~~~~~~~ 144 (257)
T PRK09291 76 VLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLI-----------TGPFTGA 144 (257)
T ss_pred EEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhcc-----------CCCCcch
Confidence 999999975433222 23345778899888766554 4455667999999975432 1223568
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeeccccc
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPV 185 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~ 185 (347)
|+.+|.++|.+++.++.+. .+++++++|||.+.
T Consensus 145 Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~ 179 (257)
T PRK09291 145 YCASKHALEAIAEAMHAELKPFGIQVATVNPGPYL 179 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccc
Confidence 9999999999988776542 48999999998764
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=162.21 Aligned_cols=163 Identities=21% Similarity=0.287 Sum_probs=130.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++|+||||+|+||++++++|+++|++|++++|+...... ..++.++.+|++|.+++.++++..
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~------------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP------------IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc------------cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999999987543321 236788999999999999888742
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|+||||||...... ..+.....+++|+.++.++++++ ++.+.++||++||...+. +...
T Consensus 73 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~ 141 (270)
T PRK06179 73 RIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL-----------PAPY 141 (270)
T ss_pred CCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC-----------CCCC
Confidence 5899999999754432 22345678899999999888874 556678999999986653 2234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAH 188 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~ 188 (347)
...|+.+|.+.+.+++.++.+. .++++++++||.+.++.
T Consensus 142 ~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~ 182 (270)
T PRK06179 142 MALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF 182 (270)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence 5689999999999998876653 48999999999998864
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=170.76 Aligned_cols=182 Identities=17% Similarity=0.129 Sum_probs=135.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||.++++.|+++|++|++++|+..+.....+.+.. ....+.++.+|++|.+++.++++..
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI----PPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc----cCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999876655444333321 1346788999999999998887641
Q ss_pred -CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHHHH----cC--CCeEEEeccccccCCCCC----C--
Q 040584 78 -KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVMAA----HG--CKNLVFSSSATAYGWPKV----V-- 139 (347)
Q Consensus 78 -~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~~----~~--~~~iv~~SS~~~yg~~~~----~-- 139 (347)
++|+||||||.... ..+.+.++..+++|+.++.++++++.. .+ .+|||++||...+..... .
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~ 161 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPA 161 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCC
Confidence 49999999996432 123345667899999999999877654 22 259999999876531100 0
Q ss_pred CC------------------CCCCCCCCCCchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCC
Q 040584 140 PC------------------TEEFPLQAMNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGA 187 (347)
Q Consensus 140 ~~------------------~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~ 187 (347)
+. .+..+..+...|+.||.+.+.+++.+++++ .++.++++|||.|++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 162 PADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADT 230 (322)
T ss_pred ccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCC
Confidence 00 012234567889999999999888888775 3799999999999864
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=161.88 Aligned_cols=226 Identities=19% Similarity=0.145 Sum_probs=150.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|++++||||+|+||++++++|+++|++|+++ .|+..........+... +.++..+.+|+.|.+++.++++..
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~i~~~~~~~~~~ 76 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA----GGKAFVLQADISDENQVVAMFTAIDQH 76 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC----CCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999874 45443333333333221 346788999999999998887642
Q ss_pred --CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHHc-------CCCeEEEeccccccCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAAH-------GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~~-------~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+|||+||...... ..+.....+++|+.++..+++++... +.++||++||...+...
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~------- 149 (247)
T PRK09730 77 DEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA------- 149 (247)
T ss_pred CCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-------
Confidence 5899999999643211 22234468899999998877765432 13479999997654211
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+ .....|+.+|...+.+++.++.+. .+++++++||+.+|+|..... . ............ ++
T Consensus 150 --~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~-----~----~~~~~~~~~~~~--~~--- 212 (247)
T PRK09730 150 --P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASG-----G----EPGRVDRVKSNI--PM--- 212 (247)
T ss_pred --C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccC-----C----CHHHHHHHHhcC--CC---
Confidence 1 112469999999999998776653 489999999999999842110 0 111111121111 11
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
+ -..+.+|+++++.+++.... ....++.+++.++
T Consensus 213 --------~----~~~~~~dva~~~~~~~~~~~-~~~~g~~~~~~g~ 246 (247)
T PRK09730 213 --------Q----RGGQPEEVAQAIVWLLSDKA-SYVTGSFIDLAGG 246 (247)
T ss_pred --------C----CCcCHHHHHHHHHhhcChhh-cCccCcEEecCCC
Confidence 0 12368999999998887522 2345677777654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=160.49 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=132.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||++++++|+++|++|++++|+..+.....+.+.. .+.++.++.+|+++.+++.++++..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA----YGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----hCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999987655444444332 1346888999999999998887632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.....+++|+.++.++++++.. .+.+++|++||...+. +..+
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~-----------~~~~ 152 (239)
T PRK07666 84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK-----------GAAV 152 (239)
T ss_pred CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc-----------CCCC
Confidence 6999999999754322 2233456789999999988887653 4567899999977652 2334
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
...|+.+|.+.+.+++.++.+. .+++++++|||.+..+
T Consensus 153 ~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~ 192 (239)
T PRK07666 153 TSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATD 192 (239)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCc
Confidence 5679999999999998877653 3899999999998875
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=162.50 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=157.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++|+||||+|+||.+++++|+++|+.|+++.|+ ...+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE----GRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999887 3333333333322 346788999999999988877643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|++||+||.....+ ..+.++..+++|+.++..+++++. +.+.+++|++||...+. +..
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 158 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQ-----------GGK 158 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhcc-----------CCC
Confidence 5899999999754322 233455688899999887776654 44567999999987763 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++++. .++++++++||.+..+..... .. .......... . ++
T Consensus 159 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~-------~~-~~~~~~~~~~-~---~~------- 219 (258)
T PRK06935 159 FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPI-------RA-DKNRNDEILK-R---IP------- 219 (258)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhc-------cc-ChHHHHHHHh-c---CC-------
Confidence 34689999999999999998875 379999999998876521000 00 0001111111 0 00
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++.+++.... ....++++.+.++.
T Consensus 220 ------~~~~~~~~dva~~~~~l~s~~~-~~~~G~~i~~dgg~ 255 (258)
T PRK06935 220 ------AGRWGEPDDLMGAAVFLASRAS-DYVNGHILAVDGGW 255 (258)
T ss_pred ------CCCCCCHHHHHHHHHHHcChhh-cCCCCCEEEECCCe
Confidence 1125678999999998886522 34567888887663
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=159.95 Aligned_cols=226 Identities=14% Similarity=0.105 Sum_probs=157.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||.+++++|+++|++|++++|+....+...+.+... +..+.++.+|+.|.+++.++++..
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA----GGKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998766555444444332 345778899999999888776532
Q ss_pred -CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|+|||+||.... ....+..+..+++|+.++..+++++ ++.+.+++|++||...+. +.
T Consensus 84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~ 152 (252)
T PRK07035 84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS-----------PG 152 (252)
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC-----------CC
Confidence 58999999985421 1122334568889999999887765 344567999999975532 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+++.+++.++++. .+++++++.||.+-.+..... .. -......... .. +
T Consensus 153 ~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~-------~~-~~~~~~~~~~-~~---~------ 214 (252)
T PRK07035 153 DFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASAL-------FK-NDAILKQALA-HI---P------ 214 (252)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccc-------cC-CHHHHHHHHc-cC---C------
Confidence 456789999999999999988764 379999999988765421000 00 0011111111 10 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
...+...+|+++++.+++.... ....++++++.++
T Consensus 215 -------~~~~~~~~~va~~~~~l~~~~~-~~~~g~~~~~dgg 249 (252)
T PRK07035 215 -------LRRHAEPSEMAGAVLYLASDAS-SYTTGECLNVDGG 249 (252)
T ss_pred -------CCCcCCHHHHHHHHHHHhCccc-cCccCCEEEeCCC
Confidence 1124578999999999887622 2356788887655
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=162.60 Aligned_cols=227 Identities=19% Similarity=0.159 Sum_probs=159.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||++++++|+++|++|+++.|+.+..+...+.+... +.++..+.+|++|.+++..++++.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA----GGEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999876555444444332 346888999999999888877642
Q ss_pred CCcEEEEccccccCC-----ccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG-----ESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||..... ...+++...+++|+.++..+++++ .+.+.+++|++||...++ +..
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~-----------~~~ 152 (253)
T PRK06172 84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG-----------AAP 152 (253)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc-----------CCC
Confidence 579999999964321 133455678889999998776643 344456999999987764 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.++ .++++.++.||.+-.+.... .... .+..........
T Consensus 153 ~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~-------~~~~-~~~~~~~~~~~~----------- 213 (253)
T PRK06172 153 KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRR-------AYEA-DPRKAEFAAAMH----------- 213 (253)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhh-------hccc-ChHHHHHHhccC-----------
Confidence 45789999999999999988875 36999999999876542000 0000 011111111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++.+.+++.... ....|+.+++.++.
T Consensus 214 -----~~~~~~~p~~ia~~~~~l~~~~~-~~~~G~~i~~dgg~ 250 (253)
T PRK06172 214 -----PVGRIGKVEEVASAVLYLCSDGA-SFTTGHALMVDGGA 250 (253)
T ss_pred -----CCCCccCHHHHHHHHHHHhCccc-cCcCCcEEEECCCc
Confidence 01124678999999999987632 24577888887664
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-20 Score=159.39 Aligned_cols=225 Identities=18% Similarity=0.177 Sum_probs=155.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+++++||||+|+||+++++.|+++|++|+++.|+... .....+.+.. .+.++.++.+|++|.+++.+++++.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA----AGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999887765432 2222233322 2457888999999999998887742
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.++..+++|+.++.++++++.+. ..++||++||...+. +..+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-----------~~~~ 149 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL-----------PLPG 149 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC-----------CCCC
Confidence 5899999999653222 22344567889999999998887653 235899999876542 3345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+++.+++.++.++ .++.+++++||.+-.+.. .. ......+.++.... +
T Consensus 150 ~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~----~~-----~~~~~~~~~~~~~~--~---------- 208 (245)
T PRK12937 150 YGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELF----FN-----GKSAEQIDQLAGLA--P---------- 208 (245)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchh----cc-----cCCHHHHHHHHhcC--C----------
Confidence 6789999999999999887664 478999999988765410 00 00111222222111 1
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
...+.+++|+++++.+++.... ....++.+++.++
T Consensus 209 -----~~~~~~~~d~a~~~~~l~~~~~-~~~~g~~~~~~~g 243 (245)
T PRK12937 209 -----LERLGTPEEIAAAVAFLAGPDG-AWVNGQVLRVNGG 243 (245)
T ss_pred -----CCCCCCHHHHHHHHHHHcCccc-cCccccEEEeCCC
Confidence 1124578999999998886522 2345788888654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=164.34 Aligned_cols=206 Identities=22% Similarity=0.213 Sum_probs=143.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
|+++|+||||+|+||+++++.|+++|++|+++.|+..+.+.. .. .++..+.+|+.|.+++..+++.
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~----~~------~~~~~~~~D~~~~~~~~~~~~~i~~~ 70 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM----NS------LGFTGILLDLDDPESVERAADEVIAL 70 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH----Hh------CCCeEEEeecCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999999999998876443221 11 2467889999999887766542
Q ss_pred --CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHH----HHHHHHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 77 --TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITL----LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 77 --~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l----~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
..+|.+||+||...... ..+.....+++|+.++.++ ++.+++.+.+++|++||...+. +
T Consensus 71 ~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-----------~ 139 (256)
T PRK08017 71 TDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI-----------S 139 (256)
T ss_pred cCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc-----------C
Confidence 25799999999643322 2233456888999988776 5566666778999999975431 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhh--cCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRS--DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
......|+.+|...|.+.+.++.+ ..+++++++|||.+..+. ......+... .....
T Consensus 140 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~------------------~~~~~~~~~~-~~~~~-- 198 (256)
T PRK08017 140 TPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRF------------------TDNVNQTQSD-KPVEN-- 198 (256)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccch------------------hhcccchhhc-cchhh--
Confidence 334578999999999988765443 248999999998765431 1111111000 00000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.+...+.+++++|+++++..++++
T Consensus 199 ----~~~~~~~~~~~~d~a~~~~~~~~~ 222 (256)
T PRK08017 199 ----PGIAARFTLGPEAVVPKLRHALES 222 (256)
T ss_pred ----hHHHhhcCCCHHHHHHHHHHHHhC
Confidence 123345679999999999999987
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=160.56 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=159.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|++|++++|+........+.+... +.++..+.+|++|.+++.+++++.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA----GGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999999865544444444332 346888999999999988877632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 87 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-----------~~~ 155 (256)
T PRK06124 87 GRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV-----------ARA 155 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc-----------CCC
Confidence 5799999999654322 2234556788999999999866543 4567999999976542 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .++++.+++|+.+.++..... . ..+......... .
T Consensus 156 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~-----~----~~~~~~~~~~~~---~-------- 215 (256)
T PRK06124 156 GDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAM-----A----ADPAVGPWLAQR---T-------- 215 (256)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhh-----c----cChHHHHHHHhc---C--------
Confidence 34689999999999998887664 379999999999988631100 0 001111111111 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++.+|++++++.++.... ....|+.+.+.++.
T Consensus 216 -----~~~~~~~~~~~a~~~~~l~~~~~-~~~~G~~i~~dgg~ 252 (256)
T PRK06124 216 -----PLGRWGRPEEIAGAAVFLASPAA-SYVNGHVLAVDGGY 252 (256)
T ss_pred -----CCCCCCCHHHHHHHHHHHcCccc-CCcCCCEEEECCCc
Confidence 01236889999999999987622 23456777776553
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=163.18 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=157.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.... . ...++.++.+|+.|.+++.++++..
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~--------~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 73 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET--------V----DGRPAEFHAADVRDPDQVAALVDAIVERH 73 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh--------h----cCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999998875430 0 1346788999999999988887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----c-CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----H-GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~-~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++..+++++.. . +.++||++||...+. +.
T Consensus 74 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~~ 142 (252)
T PRK07856 74 GRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR-----------PS 142 (252)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC-----------CC
Confidence 5799999999653322 2234456889999999999987654 1 346899999987642 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
.....|+.+|.+.+.+++.++.++ +.+.+.+++||.+..+..... . . -...........
T Consensus 143 ~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~------~-~-~~~~~~~~~~~~------------ 202 (252)
T PRK07856 143 PGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELH------Y-G-DAEGIAAVAATV------------ 202 (252)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhh------c-c-CHHHHHHHhhcC------------
Confidence 445789999999999999998875 348889999998876521000 0 0 000111111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
....+...+|+++++++++... .....++.+.+.+|...+.
T Consensus 203 -----~~~~~~~p~~va~~~~~L~~~~-~~~i~G~~i~vdgg~~~~~ 243 (252)
T PRK07856 203 -----PLGRLATPADIAWACLFLASDL-ASYVSGANLEVHGGGERPA 243 (252)
T ss_pred -----CCCCCcCHHHHHHHHHHHcCcc-cCCccCCEEEECCCcchHH
Confidence 0112457899999999888652 2246788899987765543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=158.66 Aligned_cols=215 Identities=19% Similarity=0.147 Sum_probs=154.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++|+||||+|+||++++++|+++|++|++++|++.+.....+.+.. ..++..+.+|+.|.+++.++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-----KGNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-----cCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999876554444333321 146788999999999988877632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+|||+||...... ..+.....+++|+.++..+++++... +.+++|++||...+. +....
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-----------~~~~~ 150 (237)
T PRK07326 82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN-----------FFAGG 150 (237)
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc-----------CCCCC
Confidence 6999999998654322 22334567889999999998887642 456899999976542 33345
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.+|.+.+.+.+.++.+. .+++++++||+.+..+.. . ....
T Consensus 151 ~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~----~------------------~~~~------------ 196 (237)
T PRK07326 151 AAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFN----G------------------HTPS------------ 196 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccc----c------------------cccc------------
Confidence 679999999999888876543 489999999998876410 0 0000
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.. ....+..+|++++++.++... +......+.+..+.+.
T Consensus 197 ~~--~~~~~~~~d~a~~~~~~l~~~--~~~~~~~~~~~~~~~~ 235 (237)
T PRK07326 197 EK--DAWKIQPEDIAQLVLDLLKMP--PRTLPSKIEVRPSRPP 235 (237)
T ss_pred hh--hhccCCHHHHHHHHHHHHhCC--ccccccceEEecCCCC
Confidence 00 001367899999999999873 2345566666555443
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-20 Score=158.92 Aligned_cols=224 Identities=18% Similarity=0.137 Sum_probs=156.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+++++||||+|+||+++++.|+++|++|+++ .|+..........+.. .+.++.++.+|++|.+++.++++..
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE----EGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999988 8775554433333332 2346888999999999988877632
Q ss_pred ---CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||...... ..+.++..+++|+.++.++++++.. .+.+++|++||...+. +
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~-----------~ 148 (247)
T PRK05565 80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLI-----------G 148 (247)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhcc-----------C
Confidence 5999999999763322 2234456788999998888777654 3456899999976642 1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 223 (347)
......|+.+|.+.+.+++.++.+. .+++++++|||.+..+.. ..+.+ ....... . .
T Consensus 149 ~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~-----------~~~~~~~~~~~~~-~---~----- 208 (247)
T PRK05565 149 ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMW-----------SSFSEEDKEGLAE-E---I----- 208 (247)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccc-----------cccChHHHHHHHh-c---C-----
Confidence 2234579999999998888776653 489999999998865421 01111 1111111 0 0
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....+...+|++++++.++.... ....++.+++.++
T Consensus 209 --------~~~~~~~~~~va~~~~~l~~~~~-~~~~g~~~~~~~~ 244 (247)
T PRK05565 209 --------PLGRLGKPEEIAKVVLFLASDDA-SYITGQIITVDGG 244 (247)
T ss_pred --------CCCCCCCHHHHHHHHHHHcCCcc-CCccCcEEEecCC
Confidence 01225688999999999887632 2356778887655
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=160.01 Aligned_cols=171 Identities=19% Similarity=0.192 Sum_probs=131.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
||+++||||+|+||+.++++|+++|++|++++|+........+.+... ..++.++.+|++|.+++.++++.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST----GVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999766554444433322 34678899999999988887763
Q ss_pred CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.++|+|||+||...... ..+.....+++|+.++.++++.+ ++.+.+++|++||...++ +..
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~ 150 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN-----------AFP 150 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc-----------CCC
Confidence 15899999999754322 22344567889999988877765 334457999999998764 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.+|.+.+.+++.++.+. .+++++++|||.+-.|
T Consensus 151 ~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~ 191 (241)
T PRK07454 151 QWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTP 191 (241)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCC
Confidence 45689999999999998876553 3899999999987765
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=162.79 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=159.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||+++++.|+++|++|++++|+....+...+.+.... .+.++.++.+|++|.+++.+++++.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV--AGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999997665554444443210 1346788999999999988877632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..++++..+++|+.++..+++++.. .+.++||++||...+. +...
T Consensus 86 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 154 (260)
T PRK07063 86 PLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK-----------IIPG 154 (260)
T ss_pred CCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc-----------CCCC
Confidence 6999999999653322 2345566888999999988887653 3456999999986542 2334
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
..+|+.+|.+.+.+++.++.++ .++++.+++||.+-.+...... .... -............ ++
T Consensus 155 ~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~---~~~~--~~~~~~~~~~~~~-~~--------- 219 (260)
T PRK07063 155 CFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWW---NAQP--DPAAARAETLALQ-PM--------- 219 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhh---hccC--ChHHHHHHHHhcC-CC---------
Confidence 5679999999999999988775 3799999999987654210000 0000 0000111111110 00
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ .+...+|+++++.+++... .....++.+.+.+|..
T Consensus 220 --~----r~~~~~~va~~~~fl~s~~-~~~itG~~i~vdgg~~ 255 (260)
T PRK07063 220 --K----RIGRPEEVAMTAVFLASDE-APFINATCITIDGGRS 255 (260)
T ss_pred --C----CCCCHHHHHHHHHHHcCcc-ccccCCcEEEECCCee
Confidence 1 2456899999999988652 2346778888876643
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=162.50 Aligned_cols=226 Identities=19% Similarity=0.136 Sum_probs=156.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||+++++.|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999998765443332221 346788999999999998877642
Q ss_pred -CCcEEEEccccccCC---ccccCcchhhhhhhhHHHHHHHHHHH---cCCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG---ESVQKPLPYFDNNLTGTITLLEVMAA---HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~l~~~~~~---~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
.+|+||||||..... ...+.+...+++|+.++..+++++.. .+.++||++||...+. +....
T Consensus 79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~~~~~ 147 (261)
T PRK08265 79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF-----------AQTGR 147 (261)
T ss_pred CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc-----------CCCCC
Confidence 589999999964321 23345567889999999999887653 2345899999976531 22335
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.+|.+.+.+++.++.+. .++++++++||.+..+..... .............. .
T Consensus 148 ~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~-------~~~~~~~~~~~~~~----~---------- 206 (261)
T PRK08265 148 WLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDEL-------SGGDRAKADRVAAP----F---------- 206 (261)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhh-------cccchhHHHHhhcc----c----------
Confidence 679999999999999887764 379999999988765421000 00000000111000 0
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+...+|+|+++.+++... .....++++.+.++.
T Consensus 207 --~p~~r~~~p~dva~~~~~l~s~~-~~~~tG~~i~vdgg~ 244 (261)
T PRK08265 207 --HLLGRVGDPEEVAQVVAFLCSDA-ASFVTGADYAVDGGY 244 (261)
T ss_pred --CCCCCccCHHHHHHHHHHHcCcc-ccCccCcEEEECCCe
Confidence 00112457899999999988652 224577888887664
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=183.32 Aligned_cols=236 Identities=22% Similarity=0.239 Sum_probs=164.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++|+||||+|+||+++++.|+++|++|++++|+........+.+.. ..++..+.+|++|.+++.++++..
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999886654433333221 136788999999999988877632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCC-CeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGC-KNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~-~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... +.+.+...+++|+.++..+++++. +.+. ++||++||...+. +.
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~-----------~~ 565 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN-----------PG 565 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC-----------CC
Confidence 6999999999654332 223455678899999999977654 3343 6999999987642 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeeccccc-CCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc-e-EEec
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPV-GAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA-L-TVFG 222 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g 222 (347)
.....|+.+|.+.+.+++.++.+. .++++++++|+.+| ++.. . ...+. ..+....+.... + ..++
T Consensus 566 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~---~------~~~~~-~~~~~~~g~~~~~~~~~~~ 635 (681)
T PRK08324 566 PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGI---W------TGEWI-EARAAAYGLSEEELEEFYR 635 (681)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCcc---c------cchhh-hhhhhhccCChHHHHHHHH
Confidence 345789999999999999988765 36999999999998 5420 0 00010 000111111000 0 0111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.+...+.+++++|++++++.++... .....+++|++.+|..
T Consensus 636 ------~~~~l~~~v~~~DvA~a~~~l~s~~-~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 636 ------ARNLLKREVTPEDVAEAVVFLASGL-LSKTTGAIITVDGGNA 676 (681)
T ss_pred ------hcCCcCCccCHHHHHHHHHHHhCcc-ccCCcCCEEEECCCch
Confidence 2445667899999999999988531 1345678999988764
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=158.42 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=152.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (347)
++++||||+|+||+++++.|+++|+.|++..|+.......... . +.++.++.+|++|.+++.+++++ .
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~---~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAE---L----GERVKIFPANLSDRDEVKALGQKAEADLE 79 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH---h----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999998887765444332221 1 24678889999999998887653 1
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +...
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~ 148 (245)
T PRK12936 80 GVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVT-----------GNPG 148 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCc-----------CCCC
Confidence 5899999999754321 2234566889999999988887543 3567999999975432 1123
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++.+. .++++++++|+.+..+.. ..+.+.......+..
T Consensus 149 ~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~-----------~~~~~~~~~~~~~~~------------ 205 (245)
T PRK12936 149 QANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMT-----------GKLNDKQKEAIMGAI------------ 205 (245)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchh-----------cccChHHHHHHhcCC------------
Confidence 4579999999998888776653 379999999987754310 011111111111110
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++.+++.... ....++++++.++.
T Consensus 206 ----~~~~~~~~~~ia~~~~~l~~~~~-~~~~G~~~~~~~g~ 242 (245)
T PRK12936 206 ----PMKRMGTGAEVASAVAYLASSEA-AYVTGQTIHVNGGM 242 (245)
T ss_pred ----CCCCCcCHHHHHHHHHHHcCccc-cCcCCCEEEECCCc
Confidence 11125578999999988876421 23467899987764
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-20 Score=157.92 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=152.6
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----C
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-----K 78 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 78 (347)
|+|||++|+||++++++|+++|++|+++.|+.. ......+.+.. .+.++.++.+|++|.+++.+++++. .
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKA----YGVKALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999988752 22222222222 1345788999999999988877642 5
Q ss_pred CcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccc-cCCCCCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATA-YGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 79 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~-yg~~~~~~~~e~~~~~~ 149 (347)
+|+|||+||..... ...+.+...+++|+.++.++++++.. .+.++||++||... ||. ..
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~------------~~ 144 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN------------AG 144 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC------------CC
Confidence 89999999975422 12345567888999999999988765 34569999999644 432 23
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++++. .++.+++++|+.+.++.. ..+.........+..+
T Consensus 145 ~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~-----------~~~~~~~~~~~~~~~~----------- 202 (239)
T TIGR01830 145 QANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMT-----------DKLSEKVKKKILSQIP----------- 202 (239)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhh-----------hhcChHHHHHHHhcCC-----------
Confidence 4679999999999988876653 489999999988765410 0111111111111111
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
..-+.+++|+++++..++... .....+++||++++
T Consensus 203 -----~~~~~~~~~~a~~~~~~~~~~-~~~~~g~~~~~~~g 237 (239)
T TIGR01830 203 -----LGRFGTPEEVANAVAFLASDE-ASYITGQVIHVDGG 237 (239)
T ss_pred -----cCCCcCHHHHHHHHHHHhCcc-cCCcCCCEEEeCCC
Confidence 112567999999999888542 22356789998654
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=157.75 Aligned_cols=206 Identities=20% Similarity=0.249 Sum_probs=156.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+++++|||||+.||..+++.|+++||+|+++.|+.++...+.+++.... +-.+.++.+|+++++++.++.+.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~---~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT---GVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh---CceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999998888877776542 34678899999999998887652
Q ss_pred CCCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
..+|++|||||....... .+..++++++|+.++..+..+ +.+.+.++||+++|...| .|.+
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~-----------~p~p 151 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGL-----------IPTP 151 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhc-----------CCCc
Confidence 269999999998765532 334456899999987766554 556667799999999887 3555
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
-...|+.||+..-.+...+..+. .|+.++++-||.+.-.+ .. ..+.....
T Consensus 152 ~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f---------------~~-----~~~~~~~~-------- 203 (265)
T COG0300 152 YMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEF---------------FD-----AKGSDVYL-------- 203 (265)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccc---------------cc-----cccccccc--------
Confidence 66889999999888887777665 36899999888766532 10 01110000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
....+-++..+|+|++.+..+..
T Consensus 204 ---~~~~~~~~~~~~va~~~~~~l~~ 226 (265)
T COG0300 204 ---LSPGELVLSPEDVAEAALKALEK 226 (265)
T ss_pred ---ccchhhccCHHHHHHHHHHHHhc
Confidence 11123467899999999999987
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-20 Score=158.32 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=130.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
++++||||+|+||+++++.|+++|+ +|+++.|+..+... .+.++.++.+|+.|.+++.++++.. .+|
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-----------~~~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-----------LGPRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-----------cCCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 5899999999999999999999999 99999987654321 1347888999999999999988754 489
Q ss_pred EEEEcccc-ccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGL-KAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 81 ~vih~a~~-~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
+|||+||. ..... ..+.+...+++|+.++..+++++. ..+.++||++||...+. +..+..
T Consensus 76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~-----------~~~~~~ 144 (238)
T PRK08264 76 ILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV-----------NFPNLG 144 (238)
T ss_pred EEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc-----------CCCCch
Confidence 99999997 32211 233445678899999999988865 34567899999987763 234457
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAH 188 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~ 188 (347)
.|+.+|.+++.+++.++.+. .+++++++||+.+.++.
T Consensus 145 ~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 145 TYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 89999999999998887664 37999999999998763
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=150.30 Aligned_cols=208 Identities=17% Similarity=0.161 Sum_probs=153.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc----cC-
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA----GT- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~- 77 (347)
|.++|||||+.||.++++.|.+.|++|+++.|+.++.+.+..++.+ ..+.++..|++|.+++.++++ ++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~------~~~~~~~~DVtD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA------GAALALALDVTDRAAVEAAIEALPEEFG 80 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc------CceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence 5799999999999999999999999999999998887777666542 367889999999998666554 23
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++|||||.....+ ..+++..++++|+.|..+...+ +.+.+.++||++||.... .+...
T Consensus 81 ~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~-----------~~y~~ 149 (246)
T COG4221 81 RIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR-----------YPYPG 149 (246)
T ss_pred cccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc-----------ccCCC
Confidence 5999999999654322 3456778999999998877665 555666799999997642 25556
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
.+.|+.+|+....+...+.++. .+++++++-||.|-.---+... ..+ --........
T Consensus 150 ~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~--~~g----~~~~~~~~y~--------------- 208 (246)
T COG4221 150 GAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVR--FEG----DDERADKVYK--------------- 208 (246)
T ss_pred CccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceeccccc--CCc----hhhhHHHHhc---------------
Confidence 6889999999999988887775 5788999988877432100000 000 0001111111
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKL 253 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~ 253 (347)
...++..+|+|+++.++++.+
T Consensus 209 -----~~~~l~p~dIA~~V~~~~~~P 229 (246)
T COG4221 209 -----GGTALTPEDIAEAVLFAATQP 229 (246)
T ss_pred -----cCCCCCHHHHHHHHHHHHhCC
Confidence 124678999999999999983
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=158.32 Aligned_cols=226 Identities=16% Similarity=0.102 Sum_probs=152.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|+++.++.... .+.+.. .++.++.+|++|.+++.++++..
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKELRE------KGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHh------CCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999998876654322 122221 14678999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+++...+++|+.++..+.+ .+++.+.++||++||...++. +..
T Consensus 78 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~----------~~~ 147 (255)
T PRK06463 78 GRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT----------AAE 147 (255)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC----------CCC
Confidence 5899999999753222 233456688999999766544 444445569999999877642 122
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .++++.+++||.+-.+... . .......+........+
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~----~--~~~~~~~~~~~~~~~~~------------ 209 (255)
T PRK06463 148 GTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTL----S--GKSQEEAEKLRELFRNK------------ 209 (255)
T ss_pred CccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhh----c--ccCccchHHHHHHHHhC------------
Confidence 34679999999999999988764 3799999999987543110 0 00000011111111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+...+|+++++++++.... ....|+.+.+.+|.
T Consensus 210 ----~~~~~~~~~~~va~~~~~l~s~~~-~~~~G~~~~~dgg~ 247 (255)
T PRK06463 210 ----TVLKTTGKPEDIANIVLFLASDDA-RYITGQVIVADGGR 247 (255)
T ss_pred ----CCcCCCcCHHHHHHHHHHHcChhh-cCCCCCEEEECCCe
Confidence 111234679999999999886522 23567888887664
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=156.87 Aligned_cols=226 Identities=18% Similarity=0.176 Sum_probs=150.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+|+|+||||+|+||+.+++.|+++|++|+++. |+........+.+.. ...++..+.+|+.|.+++.+++++.
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA----AGGRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh----cCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999998764 443333333333322 1346888999999999888776532
Q ss_pred ---CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHH-cC------CCeEEEecccccc-CCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAA-HG------CKNLVFSSSATAY-GWPKVVPC 141 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~-~~------~~~iv~~SS~~~y-g~~~~~~~ 141 (347)
++|+|||+||...... ..++....+++|+.++..+++.+.. .. -.+||++||...+ |..
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~----- 151 (248)
T PRK06947 77 AFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP----- 151 (248)
T ss_pred hcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC-----
Confidence 5999999999643211 2223455788999999888764432 21 2369999997543 211
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.....|+.+|.+++.+++.++++. .+++++++|||.+..|... ..+ ........ .... ++
T Consensus 152 ------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~-----~~~----~~~~~~~~-~~~~-~~- 213 (248)
T PRK06947 152 ------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHA-----SGG----QPGRAARL-GAQT-PL- 213 (248)
T ss_pred ------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccccc-----ccC----CHHHHHHH-hhcC-CC-
Confidence 123479999999999999887764 3799999999999876210 000 00111111 1110 00
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.-...++|+++++++++.... ....++.+.+.++
T Consensus 214 --------------~~~~~~e~va~~~~~l~~~~~-~~~~G~~~~~~gg 247 (248)
T PRK06947 214 --------------GRAGEADEVAETIVWLLSDAA-SYVTGALLDVGGG 247 (248)
T ss_pred --------------CCCcCHHHHHHHHHHHcCccc-cCcCCceEeeCCC
Confidence 113578999999999887632 2356677776544
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=158.28 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=157.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+... .....+.+... +.++..+.+|++|.+++.++++..
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA----GRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999887543 23333333322 346778999999999988877642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++..+++++. +.+.++||++||...+... +.
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------~~ 154 (254)
T PRK06114 84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN---------RG 154 (254)
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC---------CC
Confidence 5899999999754322 234456688899999988777643 3445699999997654211 11
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.+|.+.+.+++.++.+. .++++.+++||.+.++.. ..+ ........... .. ++
T Consensus 155 ~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~----~~~-----~~~~~~~~~~~-~~-p~------- 216 (254)
T PRK06114 155 LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMN----TRP-----EMVHQTKLFEE-QT-PM------- 216 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccc----ccc-----cchHHHHHHHh-cC-CC-------
Confidence 124679999999999999888764 479999999999877621 000 01111111111 10 01
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..+...+|+++++.+++.. ......|+++.+.+|.
T Consensus 217 --------~r~~~~~dva~~~~~l~s~-~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 217 --------QRMAKVDEMVGPAVFLLSD-AASFCTGVDLLVDGGF 251 (254)
T ss_pred --------CCCcCHHHHHHHHHHHcCc-cccCcCCceEEECcCE
Confidence 1245789999999998865 2234677888887663
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=157.23 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=160.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|++|++++|+.+..+...+.+.... .+.++.++.+|+++.+++.++++..
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF--PEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC--CCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4799999999999999999999999999999987665544444443321 1346788899999999888776532
Q ss_pred -CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||..... ...+++...+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~-----------~~~ 155 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT-----------HVR 155 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC-----------CCC
Confidence 589999999964321 2334556788999999999988764 34557999999987653 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|.+.+.+++.++.+. .+++++.++||.+.+|...... . ............ ++
T Consensus 156 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~------~--~~~~~~~~~~~~--~~-------- 217 (257)
T PRK09242 156 SGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPL------S--DPDYYEQVIERT--PM-------- 217 (257)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCccccccc------C--ChHHHHHHHhcC--CC--------
Confidence 45689999999999999887664 4799999999999876321100 0 011222222111 11
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.-+...+|+++++..++... .....++.+.+.++
T Consensus 218 -------~~~~~~~~va~~~~~l~~~~-~~~~~g~~i~~~gg 251 (257)
T PRK09242 218 -------RRVGEPEEVAAAVAFLCMPA-ASYITGQCIAVDGG 251 (257)
T ss_pred -------CCCcCHHHHHHHHHHHhCcc-cccccCCEEEECCC
Confidence 11346789999998888642 12345677877654
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=160.49 Aligned_cols=216 Identities=14% Similarity=0.066 Sum_probs=150.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----T 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 77 (347)
+|+++||||+|+||+++++.|+++|++|+++.|+..... ...++.+|++|.+++.++++. .
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~---------------~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDF---------------PGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccccc---------------CceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 378999999999999999999999999999998765310 124688999999988777653 2
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+++...+++|+.++.++.+++ ++.+.++||++||...|+. ..
T Consensus 68 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~ 135 (234)
T PRK07577 68 PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGA------------LD 135 (234)
T ss_pred CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCC------------CC
Confidence 6899999999754432 22344567888999988876654 4456679999999877642 23
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++.+. .+++++++|||.+..+..... .+. ............ .
T Consensus 136 ~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~--~~~-----~~~~~~~~~~~~--~---------- 196 (234)
T PRK07577 136 RTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQT--RPV-----GSEEEKRVLASI--P---------- 196 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccc--ccc-----chhHHHHHhhcC--C----------
Confidence 4689999999999998876653 389999999999886521000 000 000111111110 0
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+|+++++..++.... ....++.+.+.++.
T Consensus 197 -----~~~~~~~~~~a~~~~~l~~~~~-~~~~g~~~~~~g~~ 232 (234)
T PRK07577 197 -----MRRLGTPEEVAAAIAFLLSDDA-GFITGQVLGVDGGG 232 (234)
T ss_pred -----CCCCcCHHHHHHHHHHHhCccc-CCccceEEEecCCc
Confidence 1113478999999999887622 23567888887664
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-20 Score=160.74 Aligned_cols=239 Identities=12% Similarity=0.064 Sum_probs=160.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|.||++++++|+++|++|++++|+..+.+...+.+... .+.++.++.+|++|.+++.++++..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE---SNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 378999999999999999999999999999998766555444444322 1346788999999999998887632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++||+||...... ..+.+...+++|+.++..++++ +++.+.++||++||...+. +...
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~-----------~~~~ 153 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE-----------PIPN 153 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC-----------CCCc
Confidence 5899999999644322 2345567888998887766554 4445567999999987642 3334
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCC-ccHHHHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPN-NLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.+|.+.+.+.+.++.+. .++++.++.||.+-.+.............. ........... . .
T Consensus 154 ~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-------- 221 (263)
T PRK08339 154 IALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAK-P---I-------- 221 (263)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhc-c---C--------
Confidence 5679999999999999988875 378999999998765410000000000000 00001111110 0 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
....+...+|+++++.+++... .....++++.+.+|..+|
T Consensus 222 -----p~~r~~~p~dva~~v~fL~s~~-~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 222 -----PLGRLGEPEEIGYLVAFLASDL-GSYINGAMIPVDGGRLNS 261 (263)
T ss_pred -----CcccCcCHHHHHHHHHHHhcch-hcCccCceEEECCCcccc
Confidence 1123567899999999988652 224577888887776554
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=156.89 Aligned_cols=223 Identities=16% Similarity=0.113 Sum_probs=152.5
Q ss_pred CCceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCc-----------hhHHHHHHHHHhhccCCCCeEEEecCCCCH
Q 040584 1 MAKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDN-----------ASEIAVAKVKELAGYQGNNMTFHKLDLRDK 67 (347)
Q Consensus 1 m~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 67 (347)
|+++|+||||+| .||.+++++|+++|++|+++.|++. ......+.+.. .+.++.++.+|+++.
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~ 79 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIES----YGVRCEHMEIDLSQP 79 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHh----cCCeEEEEECCCCCH
Confidence 357899999996 6999999999999999999988722 11111122211 234688999999999
Q ss_pred HHHHHHHccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccC
Q 040584 68 AALEVVFAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYG 134 (347)
Q Consensus 68 ~~~~~~~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg 134 (347)
+++.++++.. .+|+|||+||...... ..+.+...+++|+.++..+++++... +.+++|++||...++
T Consensus 80 ~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~ 159 (256)
T PRK12748 80 YAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG 159 (256)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC
Confidence 9988777542 5899999999754322 22344567889999999999887542 345899999987763
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc
Q 040584 135 WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV 212 (347)
Q Consensus 135 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (347)
+......|+.+|.+.+.+++.++.+. .+++++.++||.+..+. ..........
T Consensus 160 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~--------------~~~~~~~~~~ 214 (256)
T PRK12748 160 -----------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGW--------------ITEELKHHLV 214 (256)
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCC--------------CChhHHHhhh
Confidence 23345679999999999998887664 47999999998776541 0011111111
Q ss_pred CCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 213 GRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.. .+ .+ .+...+|+++++.+++... .....++++++.++.
T Consensus 215 ~~---~~---------~~----~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~d~g~ 254 (256)
T PRK12748 215 PK---FP---------QG----RVGEPVDAARLIAFLVSEE-AKWITGQVIHSEGGF 254 (256)
T ss_pred cc---CC---------CC----CCcCHHHHHHHHHHHhCcc-cccccCCEEEecCCc
Confidence 01 00 01 1345789999998877642 123457888886653
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=159.50 Aligned_cols=231 Identities=13% Similarity=0.087 Sum_probs=155.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+ .......+.+.+. +.++..+.+|++|.+++.++++..
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN----GGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc----CCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999987 5444444444332 346788999999999888777642
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||.... .. ..+.+...+++|+.++..+++++. +.+ ++||++||...+. +.
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~-----------~~ 148 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQA-----------AD 148 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcC-----------CC
Confidence 58999999997532 12 122345677889999887766544 333 6999999987652 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++.++ .+++++++.||.+..+....... .........+....... .
T Consensus 149 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~---~~~~~~~~~~~~~~~~~---~------- 215 (272)
T PRK08589 149 LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTG---TSEDEAGKTFRENQKWM---T------- 215 (272)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcc---cchhhHHHHHhhhhhcc---C-------
Confidence 334689999999999999988775 37999999999987652110000 00000000000000000 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++++++.... ....++.+.+.++.
T Consensus 216 ------~~~~~~~~~~va~~~~~l~s~~~-~~~~G~~i~vdgg~ 252 (272)
T PRK08589 216 ------PLGRLGKPEEVAKLVVFLASDDS-SFITGETIRIDGGV 252 (272)
T ss_pred ------CCCCCcCHHHHHHHHHHHcCchh-cCcCCCEEEECCCc
Confidence 01125678999999999886522 24567788776654
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=157.08 Aligned_cols=228 Identities=12% Similarity=0.081 Sum_probs=157.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|+.|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF----PGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999998865554444333322 346888999999999998877542
Q ss_pred -CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||..... .+.+.+...+++|+.++.++++++.. .+ .++||++||...+. +.
T Consensus 77 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~~ 145 (252)
T PRK07677 77 GRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD-----------AG 145 (252)
T ss_pred CCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc-----------CC
Confidence 589999999854321 12334566899999999999888743 22 35899999886532 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.+|.+.+.+++.++.++ .++++..++||.+..+.. . . .. .........+.... .
T Consensus 146 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~----~-~-~~-~~~~~~~~~~~~~~--~------- 209 (252)
T PRK07677 146 PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGG----A-D-KL-WESEEAAKRTIQSV--P------- 209 (252)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccc----c-c-cc-cCCHHHHHHHhccC--C-------
Confidence 234579999999999999887774 379999999998874310 0 0 00 00011222222110 0
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++..++... .....++.+.+.++.
T Consensus 210 --------~~~~~~~~~va~~~~~l~~~~-~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 210 --------LGRLGTPEEIAGLAYFLLSDE-AAYINGTCITMDGGQ 245 (252)
T ss_pred --------CCCCCCHHHHHHHHHHHcCcc-ccccCCCEEEECCCe
Confidence 112567899999998887652 224567788887664
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=155.61 Aligned_cols=217 Identities=14% Similarity=0.094 Sum_probs=152.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+..... +.+.. .++.++.+|++|.+++.+++++.
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQ------AGAQCIQADFSTNAGIMAFIDELKQH 71 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHH------cCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999998765322 22222 13678899999999888876542
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC--CCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG--CKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~--~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|++||+||...... ..+.++..+++|+.++..+.+.+.. .+ .+++|++||.... .
T Consensus 72 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~-----------~ 140 (236)
T PRK06483 72 TDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVE-----------K 140 (236)
T ss_pred CCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhc-----------c
Confidence 4899999999643221 2344567889999999877666543 22 3589999986543 1
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
+......|+.+|.+.+.+++.++.++ +++++.++.||.+.-+. +. . ......... +. ++.
T Consensus 141 ~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~----~~-----~---~~~~~~~~~-~~-~~~----- 201 (236)
T PRK06483 141 GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNE----GD-----D---AAYRQKALA-KS-LLK----- 201 (236)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCC----CC-----C---HHHHHHHhc-cC-ccc-----
Confidence 22345689999999999999998886 35899999999874321 00 0 011111111 11 111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
-+...+|+++++.+++.. ....++++.+.++.
T Consensus 202 ----------~~~~~~~va~~~~~l~~~---~~~~G~~i~vdgg~ 233 (236)
T PRK06483 202 ----------IEPGEEEIIDLVDYLLTS---CYVTGRSLPVDGGR 233 (236)
T ss_pred ----------cCCCHHHHHHHHHHHhcC---CCcCCcEEEeCccc
Confidence 134689999999999864 35677888887664
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-20 Score=165.13 Aligned_cols=179 Identities=20% Similarity=0.172 Sum_probs=131.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+++|+||||+|+||++++++|+++|++|++++|+........+.+ .++.++.+|++|.+++.++++.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l--------~~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI--------DGVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------hhCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999998765544333322 1367899999999999887753
Q ss_pred CCCcEEEEccccccCCc--cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCC-CCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGE--SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWP-KVVPCTEEFPLQA 149 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~-~~~~~~e~~~~~~ 149 (347)
.++|+||||||...... ..+.++..+++|+.++..+++. +++.+.++||++||....... .....+...+..+
T Consensus 98 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 177 (315)
T PRK06196 98 RRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDK 177 (315)
T ss_pred CCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCCh
Confidence 26999999999653221 2334567889999997766654 444555699999997543211 0000111223445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAH 188 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~ 188 (347)
...|+.||.+.+.+.+.+++++ .++++++++||.+.+|.
T Consensus 178 ~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~ 218 (315)
T PRK06196 178 WLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPL 218 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCc
Confidence 5789999999999998887654 47999999999999873
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=157.52 Aligned_cols=225 Identities=15% Similarity=0.090 Sum_probs=156.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++|+||||+|+||++++++|+++|++|+++.|+.+..+.....+... ..++..+.+|+++.+++.++++..
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE----GGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999998766544443333222 346788999999999988887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC--------CCeEEEeccccccCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG--------CKNLVFSSSATAYGWPKVVP 140 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~--------~~~iv~~SS~~~yg~~~~~~ 140 (347)
++|+|||+||...... ..+.+...+++|+.++..+++++.. .. .+++|++||...+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------ 158 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR------ 158 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC------
Confidence 5899999999643322 2234566788999999988887652 11 25899999987652
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCce
Q 040584 141 CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPAL 218 (347)
Q Consensus 141 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (347)
+.....+|+.+|.+.+.+++.++.+. .++++++++||.+++|..... ........ .... +
T Consensus 159 -----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~---------~~~~~~~~-~~~~---~ 220 (258)
T PRK06949 159 -----VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHH---------WETEQGQK-LVSM---L 220 (258)
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhc---------cChHHHHH-HHhc---C
Confidence 33445789999999999998887764 479999999999998731100 00011111 1111 0
Q ss_pred EEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 219 TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
+ ...+...+|+++++.+++.... ....|..+.+.++
T Consensus 221 ~-------------~~~~~~p~~~~~~~~~l~~~~~-~~~~G~~i~~dgg 256 (258)
T PRK06949 221 P-------------RKRVGKPEDLDGLLLLLAADES-QFINGAIISADDG 256 (258)
T ss_pred C-------------CCCCcCHHHHHHHHHHHhChhh-cCCCCcEEEeCCC
Confidence 0 0124457999999999887522 2345666666544
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-20 Score=164.37 Aligned_cols=184 Identities=20% Similarity=0.134 Sum_probs=131.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|+++.|+..+.....+.+.... ....+.++.+|++|.+++.+++++.
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT--PGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 4789999999999999999999999999999987665544333333221 1346788999999999998877632
Q ss_pred -CCcEEEEccccccCCc--cccCcchhhhhhhhH----HHHHHHHHHHcCCCeEEEeccccccC--CCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE--SVQKPLPYFDNNLTG----TITLLEVMAAHGCKNLVFSSSATAYG--WPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~--~~~~~~~~~~~nv~~----~~~l~~~~~~~~~~~iv~~SS~~~yg--~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.++..+++|+.+ +..+++.+++.+.++||++||...+. ........++.+..
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~ 173 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERRYN 173 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccCCC
Confidence 5899999999654322 234556788999999 44556666665567999999987542 21111112223345
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEE--EeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKII--LLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~--~lR~~~v~G~ 187 (347)
+...|+.||.+.+.+.+.++++. .+++++ ++.||.+..+
T Consensus 174 ~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~ 216 (306)
T PRK06197 174 RVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTE 216 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCc
Confidence 66789999999999999888765 355444 4478877654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=157.46 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=158.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||.+++++|+++|++|++++|+....+...+.+... +.++..+.+|++|.+++.+++++.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS----GGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999998766555444444332 346778899999999988877632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++..+++++.. .+ .+++|++||....-. ...
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---------~~~ 155 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII---------NVP 155 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC---------CCC
Confidence 6999999999754332 2234456778999999999887653 22 247999998754210 001
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++.++ .++++.+++||.+-.+.. ..+......... . .+
T Consensus 156 ~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~-----------~~~~~~~~~~~~-~---~~------ 214 (253)
T PRK05867 156 QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELV-----------EPYTEYQPLWEP-K---IP------ 214 (253)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccc-----------ccchHHHHHHHh-c---CC------
Confidence 123579999999999999988775 379999999998865420 011111111111 1 00
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+|+++.+++... .....++++.+.+|.
T Consensus 215 -------~~r~~~p~~va~~~~~L~s~~-~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 215 -------LGRLGRPEELAGLYLYLASEA-SSYMTGSDIVIDGGY 250 (253)
T ss_pred -------CCCCcCHHHHHHHHHHHcCcc-cCCcCCCeEEECCCc
Confidence 112567899999999988652 234577888887764
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=156.00 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=152.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+++||||+|+||++++++|+++|++|++..+.. .......+.+.. .+.++..+.+|++|.+++.+++++.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKA----LGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 7799999999999999999999999998754432 222222222222 1345677899999999988877532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+.++..+++|+.++..+.+++ ++.+.++||++||..... +..
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~ 148 (246)
T PRK12938 80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK-----------GQF 148 (246)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC-----------CCC
Confidence 5899999999754221 23445678899999977766654 445667999999975431 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.+|.+.+.+++.++++. .++++++++||.+.+|.. ..+.+ .+.......
T Consensus 149 ~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~-----------~~~~~~~~~~~~~~~----------- 206 (246)
T PRK12938 149 GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMV-----------KAIRPDVLEKIVATI----------- 206 (246)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchh-----------hhcChHHHHHHHhcC-----------
Confidence 45789999999999988877653 479999999999887621 00111 222222111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++.+++.... ....++.+.+.++.
T Consensus 207 ------~~~~~~~~~~v~~~~~~l~~~~~-~~~~g~~~~~~~g~ 243 (246)
T PRK12938 207 ------PVRRLGSPDEIGSIVAWLASEES-GFSTGADFSLNGGL 243 (246)
T ss_pred ------CccCCcCHHHHHHHHHHHcCccc-CCccCcEEEECCcc
Confidence 11124578999999998886522 23567888886653
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=162.31 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=147.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++|+||||+|+||++++++|+++|++|+++.|+....+...+.+... +.++..+.+|++|.++++++++..
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999998866555444444332 346788999999999998876532
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++||+||...... ..+.....+++|+.++.++.+ .+++.+.++||++||...+. +...
T Consensus 85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~-----------~~~~ 153 (334)
T PRK07109 85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR-----------SIPL 153 (334)
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc-----------CCCc
Confidence 6999999999654322 223445678888777766544 44555567999999998763 2234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
...|+.+|.+.+.+.+.++.+. .++.+++++|+.+..|. ............
T Consensus 154 ~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~---------------~~~~~~~~~~~~---------- 208 (334)
T PRK07109 154 QSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQ---------------FDWARSRLPVEP---------- 208 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCch---------------hhhhhhhccccc----------
Confidence 5689999999999988776653 36899999999887652 111111111000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.....+...+|+|++++.++.+
T Consensus 209 -----~~~~~~~~pe~vA~~i~~~~~~ 230 (334)
T PRK07109 209 -----QPVPPIYQPEVVADAILYAAEH 230 (334)
T ss_pred -----cCCCCCCCHHHHHHHHHHHHhC
Confidence 0112356789999999999987
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=164.62 Aligned_cols=264 Identities=17% Similarity=0.125 Sum_probs=177.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC---CeEEEEeCCCchhH---H--------HHHHHHHhhccCCCCeEEEecCCCCH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG---YKTVVVDNLDNASE---I--------AVAKVKELAGYQGNNMTFHKLDLRDK 67 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g---~~v~~~~r~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~Dl~d~ 67 (347)
+|+|||||||||+|+-|++.|++.- -.++++.|...... + +++.+.+..+..-.++.++.||+.++
T Consensus 12 ~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~~ 91 (467)
T KOG1221|consen 12 NKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISEP 91 (467)
T ss_pred CCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccCc
Confidence 4899999999999999999999963 36677777665321 1 22333333333456888999999753
Q ss_pred ------HHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCC---CC
Q 040584 68 ------AALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGW---PK 137 (347)
Q Consensus 68 ------~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~---~~ 137 (347)
.+++.+.+ .+|+|||+||-..+.+ .......+|+.|++++++.|++. +.+-+||+||+++--. -.
T Consensus 92 ~LGis~~D~~~l~~--eV~ivih~AAtvrFde---~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~ 166 (467)
T KOG1221|consen 92 DLGISESDLRTLAD--EVNIVIHSAATVRFDE---PLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIE 166 (467)
T ss_pred ccCCChHHHHHHHh--cCCEEEEeeeeeccch---hhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccccc
Confidence 45555555 6999999999766533 23445677999999999999987 4778999999987511 11
Q ss_pred CCCCCCCC-----------------------C---CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCC
Q 040584 138 VVPCTEEF-----------------------P---LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSG 191 (347)
Q Consensus 138 ~~~~~e~~-----------------------~---~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~ 191 (347)
+.++.+.. + ....+.|..+|+.+|.++...+. +++++++||+.|......+
T Consensus 167 E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~---~lPivIiRPsiI~st~~EP 243 (467)
T KOG1221|consen 167 EKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE---NLPLVIIRPSIITSTYKEP 243 (467)
T ss_pred ccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc---CCCeEEEcCCceeccccCC
Confidence 11111110 0 12457799999999999988654 7899999999998754322
Q ss_pred CCCCCCCCCCcc---HHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCC--CCCeeEEcc
Q 040584 192 KGEDPRGIPNNL---MPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPK--VGCEVYNLG 266 (347)
Q Consensus 192 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~--~~~~~~nv~ 266 (347)
+ .|+...+ ..++....+|... .+.+ +.+...+.|.||.++++++.+........ ..-.+||++
T Consensus 244 ~----pGWidn~~gp~g~i~g~gkGvlr--~~~~------d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~t 311 (467)
T KOG1221|consen 244 F----PGWIDNLNGPDGVIIGYGKGVLR--CFLV------DPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLT 311 (467)
T ss_pred C----CCccccCCCCceEEEEeccceEE--EEEE------ccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEec
Confidence 2 1111111 1122222333222 2223 67888999999999999997764322111 124599998
Q ss_pred CCC--cccHHHHHHHHHHHhC
Q 040584 267 TGK--GTSVLEMVAAFEKASG 285 (347)
Q Consensus 267 ~~~--~~s~~e~~~~i~~~~g 285 (347)
+++ ++++.++.+...+.+.
T Consensus 312 ss~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 312 SSNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred ccccCcccHHHHHHHHHHhcc
Confidence 875 6999999999888765
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=156.70 Aligned_cols=170 Identities=16% Similarity=0.222 Sum_probs=128.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||.++++.|+++|++|+++.|+..........+... +.++..+.+|++|.+++.+++...
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA----GGKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999999999998755444433333322 346788999999999988876532
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|+|||+||...... ..+.+...+++|+.++..+++++.. .+ .+++|++||..... +..
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~ 145 (254)
T TIGR02415 77 GFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE-----------GNP 145 (254)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC-----------CCC
Confidence 5899999999754322 2334456789999999877766543 23 35899999965531 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.+|.+.+.+++.++.+. .++.+++++||.+..+
T Consensus 146 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~ 186 (254)
T TIGR02415 146 ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTP 186 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCh
Confidence 46789999999999998887664 3689999999987654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=156.09 Aligned_cols=232 Identities=14% Similarity=0.092 Sum_probs=159.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+++++||||+|+||.+++++|+++|++|+++.|+........+.+... +.++.++.+|++|.+++.+++++
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL----GIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999999999999999999988776555444444322 34688899999999999888764
Q ss_pred CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.++|+|||+||...... ..+.+...+++|+.++..+++++. +.+.++||++||..... +..
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 154 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL-----------GRE 154 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC-----------CCC
Confidence 15899999999754322 234456678899999988877654 34567999999964321 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|.+.+.+++.++++. .+++++.++||.+..+.......... .....++...... ..
T Consensus 155 ~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~--~~~~~~~~~~~~~-~~----------- 220 (265)
T PRK07097 155 TVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQA--DGSRHPFDQFIIA-KT----------- 220 (265)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccc--cccchhHHHHHHh-cC-----------
Confidence 45789999999999999998875 47999999999998763211100000 0000111111111 10
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....+...+|+++++..++.... ....++.+.+.++
T Consensus 221 -----~~~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~~~gg 256 (265)
T PRK07097 221 -----PAARWGDPEDLAGPAVFLASDAS-NFVNGHILYVDGG 256 (265)
T ss_pred -----CccCCcCHHHHHHHHHHHhCccc-CCCCCCEEEECCC
Confidence 01125568999999999987632 2346677777655
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=153.42 Aligned_cols=220 Identities=15% Similarity=0.148 Sum_probs=151.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+|+||||+|+||+++++.|+++|++|+++.|+.... .+.+... .++.++.+|++|.+++.++++.. ++|
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDA---AERLAQE-----TGATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHH---HHHHHHH-----hCCeEEecCCCCHHHHHHHHHHhCCCc
Confidence 37899999999999999999999999998776543221 1112111 13567889999999888887653 489
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchh
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYG 154 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~ 154 (347)
+|||+||...... ..++++..+++|+.++..++..+... ..+++|++||.... ..+..+...|+
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----------~~~~~~~~~Y~ 147 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD----------RMPVAGMAAYA 147 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc----------cCCCCCCcchH
Confidence 9999999753221 23455678999999999887665543 24599999997541 12344567899
Q ss_pred hhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 155 RSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
.+|.+.+.+++.++.+. .++++++++||.+..+.. . ...+....... . .+
T Consensus 148 ~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~------~-----~~~~~~~~~~~-~---~~------------- 199 (237)
T PRK12742 148 ASKSALQGMARGLARDFGPRGITINVVQPGPIDTDAN------P-----ANGPMKDMMHS-F---MA------------- 199 (237)
T ss_pred HhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcc------c-----cccHHHHHHHh-c---CC-------------
Confidence 99999999999887764 479999999998876420 0 01111111111 1 00
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
...+...+|+++++.+++... .....+..+.+.++
T Consensus 200 ~~~~~~p~~~a~~~~~l~s~~-~~~~~G~~~~~dgg 234 (237)
T PRK12742 200 IKRHGRPEEVAGMVAWLAGPE-ASFVTGAMHTIDGA 234 (237)
T ss_pred CCCCCCHHHHHHHHHHHcCcc-cCcccCCEEEeCCC
Confidence 012467899999999888652 22356778877655
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=158.72 Aligned_cols=231 Identities=18% Similarity=0.144 Sum_probs=159.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+++++||||+|+||+.+++.|+++|++ |++++|+........+.+.. .+.++.++.+|+++.+++.++++..
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA----LGAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh----cCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999 99998876544433333322 2346778899999999988877642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++... + .+++|++||...++.
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~----------- 150 (260)
T PRK06198 82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGG----------- 150 (260)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----------
Confidence 5899999999654322 22334557889999999998876542 2 358999999887642
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
......|+.+|...|.+++.++.++ .++.++.++|+.++++...... ..+......++......
T Consensus 151 ~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~~~~~~~~----------- 216 (260)
T PRK06198 151 QPFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQ---REFHGAPDDWLEKAAAT----------- 216 (260)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhh---hhccCCChHHHHHHhcc-----------
Confidence 2335689999999999999887764 4689999999999886311000 00000111122221111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.....+++.+|+++++.+++... .....++++++.++
T Consensus 217 ------~~~~~~~~~~~~a~~~~~l~~~~-~~~~~G~~~~~~~~ 253 (260)
T PRK06198 217 ------QPFGRLLDPDEVARAVAFLLSDE-SGLMTGSVIDFDQS 253 (260)
T ss_pred ------CCccCCcCHHHHHHHHHHHcChh-hCCccCceEeECCc
Confidence 11223678999999999988652 22356788887654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=158.12 Aligned_cols=196 Identities=18% Similarity=0.172 Sum_probs=143.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+........+.+ ..+..+.+|++|.+++.++++..
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL--------GLVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------ccceEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999988765443322221 14678899999999987776532
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||....... .+.....+++|+.++..+++++ ++.+.++||++||...+. +..
T Consensus 77 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 145 (273)
T PRK07825 77 GPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI-----------PVP 145 (273)
T ss_pred CCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC-----------CCC
Confidence 58999999997543322 2234557889999988876654 445667999999987652 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+.+.++.+. .++++++++|+.+-.+. . .+..
T Consensus 146 ~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~------------------~----~~~~----------- 192 (273)
T PRK07825 146 GMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTEL------------------I----AGTG----------- 192 (273)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchh------------------h----cccc-----------
Confidence 56789999999988887766553 48999999998765431 0 0000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
......++..+|+|++++.++.+
T Consensus 193 ---~~~~~~~~~~~~va~~~~~~l~~ 215 (273)
T PRK07825 193 ---GAKGFKNVEPEDVAAAIVGTVAK 215 (273)
T ss_pred ---cccCCCCCCHHHHHHHHHHHHhC
Confidence 00112367899999999999986
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=157.88 Aligned_cols=171 Identities=15% Similarity=0.165 Sum_probs=126.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC-CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL-DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
+++||||+|+||.++++.|+++|++|++++|+ .+..+...+.+....+ ...+..+.+|++|.+++.++++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHG--EGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--CceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 48999999999999999999999999999987 4434333333322111 123445789999999988877532
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhh----HHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLT----GTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~----~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..++....+++|+. ++..+++++++.+.++||++||...+. +...
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~-----------~~~~ 147 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFK-----------AEPD 147 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhcc-----------CCCC
Confidence 5899999999754322 22234557778888 667777778777778999999988764 2234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~ 187 (347)
...|+.+|.+.+.+++.++.+. .+++++.++|+.+.+|
T Consensus 148 ~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~ 189 (251)
T PRK07069 148 YTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTG 189 (251)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCc
Confidence 4579999999999999887653 2488899999998886
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=155.81 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=155.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|.||++++++|+++|++|++++|+.. +...+.+... +.++.++.+|++|.+++.++++..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL----GRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc----CCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999998887532 2222333222 346788999999999999887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||...... ..+.+...+++|+.++..+.+++.. .+ -++||++||...+.. .
T Consensus 82 g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~-----------~ 150 (251)
T PRK12481 82 GHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG-----------G 150 (251)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC-----------C
Confidence 5899999999754322 2345667889999999888776543 23 358999999877632 2
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++.+. .++++.+++||.+-.+.... ... .......... . ++
T Consensus 151 ~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~-------~~~-~~~~~~~~~~-~---~p------ 212 (251)
T PRK12481 151 IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAA-------LRA-DTARNEAILE-R---IP------ 212 (251)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhh-------ccc-ChHHHHHHHh-c---CC------
Confidence 234579999999999999888764 37999999999876542100 000 0001111111 1 11
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.+ .+...+|+++++.+++.... ....++++.+.++
T Consensus 213 ---~~----~~~~peeva~~~~~L~s~~~-~~~~G~~i~vdgg 247 (251)
T PRK12481 213 ---AS----RWGTPDDLAGPAIFLSSSAS-DYVTGYTLAVDGG 247 (251)
T ss_pred ---CC----CCcCHHHHHHHHHHHhCccc-cCcCCceEEECCC
Confidence 11 25678999999999986522 3456778877655
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=156.66 Aligned_cols=231 Identities=15% Similarity=0.127 Sum_probs=155.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||++++++|+++|++|++++|+....+...+.+ ..++.++.+|++|.+++.++++..
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-------GDHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999998765443322221 235778999999999888877542
Q ss_pred CCcEEEEccccccCC-c----ccc----CcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG-E----SVQ----KPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 ~~d~vih~a~~~~~~-~----~~~----~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+|||+||..... . ..+ .+...+++|+.++..+++++... .-+++|++||...+.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------- 148 (263)
T PRK06200 80 KLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY----------- 148 (263)
T ss_pred CCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC-----------
Confidence 699999999964321 1 111 14457889999999888876542 235899999987753
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCC--CCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGK--GEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+......|+.+|.+.+.+++.++.+. +++++.++.||.+..+-.... +...... . ..+-........ .
T Consensus 149 ~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~---~---- 219 (263)
T PRK06200 149 PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSI-S-DSPGLADMIAAI---T---- 219 (263)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCccc-c-cccchhHHhhcC---C----
Confidence 23345679999999999999998875 458999999998865421100 0000000 0 001011111111 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...-+...+|+++++.+++.........++++.+.+|.
T Consensus 220 ---------p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG~ 257 (263)
T PRK06200 220 ---------PLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGGL 257 (263)
T ss_pred ---------CCCCCCCHHHHhhhhhheecccccCcccceEEEEcCce
Confidence 11235678999999999887521234677888887663
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-19 Score=153.40 Aligned_cols=172 Identities=19% Similarity=0.174 Sum_probs=131.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--CC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--KF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~ 79 (347)
||+++||||+|+||.+++++|+++|++|++++|+.+..+...+.+... ...++.++.+|++|.+++.+++++. .+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR---GAVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh---cCCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 478999999999999999999999999999999876554444333221 2347889999999999988877642 47
Q ss_pred cEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 80 DAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 80 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
|+|||+||...... ..+++...+++|+.++..+++++.. .+.+++|++||..... +.....
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~~ 146 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR-----------GRASNY 146 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC-----------CCCCCc
Confidence 99999999644322 2223345788999999999887654 3567999999975421 122345
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.|+.+|.+.+.+++.++.+. .++++++++|+.+.++
T Consensus 147 ~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~ 184 (243)
T PRK07102 147 VYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTP 184 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCh
Confidence 79999999999998886653 4799999999998875
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=153.80 Aligned_cols=215 Identities=18% Similarity=0.176 Sum_probs=149.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||+|+||+++++.|+++|++|++++|+..... ..++..+.+|+++. +.++++.. ++|
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-------------~~~~~~~~~D~~~~--~~~~~~~~~~id 69 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL-------------SGNFHFLQLDLSDD--LEPLFDWVPSVD 69 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc-------------CCcEEEEECChHHH--HHHHHHhhCCCC
Confidence 578999999999999999999999999999988654321 23677889999987 44444332 689
Q ss_pred EEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 81 ~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
+|||+||.... ....+++...+++|+.++.++++++.. .+.++||++||...+. +.....
T Consensus 70 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~~ 138 (235)
T PRK06550 70 ILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFV-----------AGGGGA 138 (235)
T ss_pred EEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc-----------CCCCCc
Confidence 99999995321 112334566899999999999887653 3456899999987652 223346
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.+|.+.+.+++.++.++ .++++++++||.+..+... ..... ...........
T Consensus 139 ~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~------~~~~~--~~~~~~~~~~~--------------- 195 (235)
T PRK06550 139 AYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTA------ADFEP--GGLADWVARET--------------- 195 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccc------cccCc--hHHHHHHhccC---------------
Confidence 79999999999998887764 3799999999999876210 00000 01111111110
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....+...+|+|+++++++.... ....++++.+.+|
T Consensus 196 --~~~~~~~~~~~a~~~~~l~s~~~-~~~~g~~~~~~gg 231 (235)
T PRK06550 196 --PIKRWAEPEEVAELTLFLASGKA-DYMQGTIVPIDGG 231 (235)
T ss_pred --CcCCCCCHHHHHHHHHHHcChhh-ccCCCcEEEECCc
Confidence 11225678999999999986522 2346677877665
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=158.28 Aligned_cols=222 Identities=16% Similarity=0.103 Sum_probs=149.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++|+||||+|+||++++++|+++|++|++++|+........+.+ ...++.+|++|.+++.++++..
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---------~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---------GGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---------CCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999998755433222221 1257889999999988887642
Q ss_pred -CCcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEecccc-ccCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSAT-AYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~-~yg~~~~~~~~e~~ 145 (347)
++|+|||+||..... ...+.+...+++|+.++..+++.+. +.+.+++|++||.. ++|.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~---------- 147 (255)
T PRK06057 78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS---------- 147 (255)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC----------
Confidence 589999999964321 1123356688899999988777654 34456899999854 4432
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
......|+.+|.+.+.+++.++.+. .++.+++++||.+.+|..... ... -.....+... .++
T Consensus 148 -~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~------~~~-~~~~~~~~~~----~~~---- 211 (255)
T PRK06057 148 -ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQEL------FAK-DPERAARRLV----HVP---- 211 (255)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhh------ccC-CHHHHHHHHh----cCC----
Confidence 1234579999998888887665543 379999999999987631100 000 0001111000 000
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
. ..+..++|+++++..++... .....++.+.+.++
T Consensus 212 -----~----~~~~~~~~~a~~~~~l~~~~-~~~~~g~~~~~~~g 246 (255)
T PRK06057 212 -----M----GRFAEPEEIAAAVAFLASDD-ASFITASTFLVDGG 246 (255)
T ss_pred -----C----CCCcCHHHHHHHHHHHhCcc-ccCccCcEEEECCC
Confidence 1 13688999999998877652 22345677777655
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=157.09 Aligned_cols=227 Identities=18% Similarity=0.169 Sum_probs=155.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||+++++.|+++|+.|++++|+.+......+.+... ..++.++.+|++|.+++.+++++.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA----GPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 69999999999999999999999999999998765544333333322 335678899999999998887642
Q ss_pred CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 ~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+|||+||..... ...+.+...+++|+.++.++++++... .-++||++||...+. +....
T Consensus 86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~-----------~~~~~ 154 (264)
T PRK07576 86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV-----------PMPMQ 154 (264)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc-----------CCCCc
Confidence 589999999853221 123344567889999999998877642 225999999976541 33445
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.+|.+.+.+++.++.+. .++++++++|+.+.+... .....+. .......... +
T Consensus 155 ~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~-----~~~~~~~---~~~~~~~~~~---~---------- 213 (264)
T PRK07576 155 AHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEG-----MARLAPS---PELQAAVAQS---V---------- 213 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHH-----HhhcccC---HHHHHHHHhc---C----------
Confidence 689999999999999887764 478999999998764210 0000000 0111111100 1
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++++++.... ....+..+.+.++.
T Consensus 214 ---~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~~~gg~ 250 (264)
T PRK07576 214 ---PLKRNGTKQDIANAALFLASDMA-SYITGVVLPVDGGW 250 (264)
T ss_pred ---CCCCCCCHHHHHHHHHHHcChhh-cCccCCEEEECCCc
Confidence 11235678999999999987522 23456777776654
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=155.14 Aligned_cols=175 Identities=18% Similarity=0.146 Sum_probs=132.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++++||||+|+||++++++|+++|++|++++|+....+.....+.... .+.++.++.+|++|.+++.+++++.
T Consensus 1 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY--PGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC--CCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999988766554444333221 1346788999999999888877632
Q ss_pred --CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||....... .+.....+++|+.++..+++++. +.+.++||++||...... ..
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------~~ 148 (248)
T PRK08251 79 LGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG----------LP 148 (248)
T ss_pred cCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC----------CC
Confidence 59999999997543322 22334578899999988888764 445679999999765311 11
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.+...|+.||.+.+.+++.++.+. .++++++++||.+.++
T Consensus 149 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~ 190 (248)
T PRK08251 149 GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSE 190 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcch
Confidence 234689999999999998887664 3789999999988764
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=154.47 Aligned_cols=233 Identities=15% Similarity=0.131 Sum_probs=156.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+.. .....+.+.. ...++.++.+|+++.+++.++++..
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCG----RGHRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHH----hCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999988753 2222222222 1346778999999999988887642
Q ss_pred -CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|+|||+||........ +..+..+++|+.++..+++++.. .+.++||++||..... .+..
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------~~~~ 150 (263)
T PRK08226 81 GRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM----------VADP 150 (263)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc----------cCCC
Confidence 689999999975433322 23344788999999998887653 3456899999965410 1223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .+++++.++||.+.++......... .+......+..+..+.
T Consensus 151 ~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~--~~~~~~~~~~~~~~~~------------ 216 (263)
T PRK08226 151 GETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQS--NPEDPESVLTEMAKAI------------ 216 (263)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhc--cCCCcHHHHHHHhccC------------
Confidence 35679999999999999888765 3799999999999876211110000 0001111222222211
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++.+++... .....++++-+.++.
T Consensus 217 -----p~~~~~~~~~va~~~~~l~~~~-~~~~~g~~i~~dgg~ 253 (263)
T PRK08226 217 -----PLRRLADPLEVGELAAFLASDE-SSYLTGTQNVIDGGS 253 (263)
T ss_pred -----CCCCCCCHHHHHHHHHHHcCch-hcCCcCceEeECCCc
Confidence 0112457899999998887542 124566777776553
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=156.39 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=128.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--CC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--KF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~ 79 (347)
|++++||||+|+||+++++.|+++|++|++++|+....+... .. ..++.++.+|++|.+++.+++++. .+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~----~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 72 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELH----TQ----SANIFTLAFDVTDHPGTKAALSQLPFIP 72 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----Hh----cCCCeEEEeeCCCHHHHHHHHHhcccCC
Confidence 478999999999999999999999999999998754433221 11 236788999999999999998753 47
Q ss_pred cEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCCch
Q 040584 80 DAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPY 153 (347)
Q Consensus 80 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y 153 (347)
|++||+||...... ..+.....+++|+.++.++++++... +.+++|++||.... .+......|
T Consensus 73 d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~-----------~~~~~~~~Y 141 (240)
T PRK06101 73 ELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE-----------LALPRAEAY 141 (240)
T ss_pred CEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc-----------cCCCCCchh
Confidence 99999998543211 22234568999999999999988753 23589999986532 122345689
Q ss_pred hhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 154 GRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
+.+|.+++.+++.++.+. .++++++++||.+++|
T Consensus 142 ~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~ 177 (240)
T PRK06101 142 GASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATP 177 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCC
Confidence 999999999998877542 4899999999999886
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-19 Score=154.54 Aligned_cols=238 Identities=14% Similarity=0.090 Sum_probs=156.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||+++++.|+++|++|++++|+..+.....+.+....+ ..++..+.+|++|.+++.++++..
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP--GARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC--CceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999987665544444433211 236778899999999988776532
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.+...+++|+.++..+.+.+ ++.+.++||++||...+. +...
T Consensus 87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 155 (265)
T PRK07062 87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ-----------PEPH 155 (265)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC-----------CCCC
Confidence 5899999999754322 22345567888888877766554 334456999999987642 2233
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++.+. .+++++++.||.+-.+...............+..+........ .+
T Consensus 156 ~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------- 224 (265)
T PRK07062 156 MVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKK--GI--------- 224 (265)
T ss_pred chHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcC--CC---------
Confidence 4679999999999998877764 4799999999988654210000000000000011111111100 00
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++.+++... .....++++.+.+|.
T Consensus 225 ----p~~r~~~p~~va~~~~~L~s~~-~~~~tG~~i~vdgg~ 261 (265)
T PRK07062 225 ----PLGRLGRPDEAARALFFLASPL-SSYTTGSHIDVSGGF 261 (265)
T ss_pred ----CcCCCCCHHHHHHHHHHHhCch-hcccccceEEEcCce
Confidence 1112567899999999888642 234577888887663
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=151.18 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=150.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+++||||+|+||++++++|+++|++|+++.|+.. ........... ...++.++.+|++|.+++.++++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGA----LGFDFRVVEGDVSSFESCKAAVAKVEAEL 76 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh----hCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999998887322 22211111111 2346889999999999888776532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|+|||+||...... ..+.+...+++|+.++..+++. +++.+.++||++||..... +..
T Consensus 77 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~-----------~~~ 145 (242)
T TIGR01829 77 GPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK-----------GQF 145 (242)
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC-----------CCC
Confidence 5899999999654221 2234456778899998776554 4555677999999975431 122
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.+|.+.+.+++.++++. .+++++.++|+.+.++.. ..+.+ ......... .+
T Consensus 146 ~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~-----------~~~~~~~~~~~~~~~--~~------- 205 (242)
T TIGR01829 146 GQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMV-----------MAMREDVLNSIVAQI--PV------- 205 (242)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccc-----------cccchHHHHHHHhcC--CC-------
Confidence 34679999999999988876653 489999999999887621 01111 222222111 01
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..+...+|+++++.+++.... ....++.+.+.++.
T Consensus 206 --------~~~~~~~~~a~~~~~l~~~~~-~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 206 --------GRLGRPEEIAAAVAFLASEEA-GYITGATLSINGGL 240 (242)
T ss_pred --------CCCcCHHHHHHHHHHHcCchh-cCccCCEEEecCCc
Confidence 113456899999887775522 23467888887664
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=159.96 Aligned_cols=184 Identities=18% Similarity=0.141 Sum_probs=137.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+++||.+++++|+++|++|+++.|+..+.....+.+....+ ..++.++.+|++|.+++.++++..
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~--~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP--DAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999999987766555555543321 236788999999999998887642
Q ss_pred -CCcEEEEccccccCC---ccccCcchhhhhhhhHHHHHHHHHHH---cCCCeEEEecccccc-CCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG---ESVQKPLPYFDNNLTGTITLLEVMAA---HGCKNLVFSSSATAY-GWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~l~~~~~~---~~~~~iv~~SS~~~y-g~~~~~~~~e~~~~~~ 149 (347)
++|+||||||..... .+.+.++..+.+|+.+...+.+.+.. .+..+||++||...+ +........++.+..+
T Consensus 92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~~~~~ 171 (313)
T PRK05854 92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWERSYAG 171 (313)
T ss_pred CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccccccCcc
Confidence 589999999975432 23456677899999998888776552 234589999997654 2222222333444566
Q ss_pred CCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~ 187 (347)
...|+.||.+.+.+.++++++. .++.+.++.||.+-.+
T Consensus 172 ~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 172 MRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 7789999999999999887642 3689999999988643
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=157.87 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=132.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (347)
++|+||||+|+||+++++.|+++|++|+++.|+....+...+.+... +.++..+.+|++|.++++++++. .
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~----g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL----GAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999876655554444432 34677889999999999988753 1
Q ss_pred CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++|||||........ +.....+++|+.++.++.+++. +.+.++||++||...+. +...
T Consensus 84 ~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~-----------~~p~ 152 (330)
T PRK06139 84 RIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA-----------AQPY 152 (330)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC-----------CCCC
Confidence 689999999975443322 3345578999999988877653 44456899999987652 2233
Q ss_pred CCchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~ 187 (347)
...|+.||.+.+.+.+.++.+. .++.++++.||.+..|
T Consensus 153 ~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~ 193 (330)
T PRK06139 153 AAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTP 193 (330)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCc
Confidence 5689999999888888877664 3789999999998876
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=152.11 Aligned_cols=171 Identities=20% Similarity=0.221 Sum_probs=126.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
++|+||||+|+||++++++|+++| ++|+++.|+.+. .+...+++... ...++.++.+|++|.+++.++++.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~---~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA---GASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc---CCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 789999999999999999999995 999999998775 55444444432 123688899999999887665542
Q ss_pred CCCcEEEEccccccCCcc-ccCc---chhhhhhhhHHHH----HHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGES-VQKP---LPYFDNNLTGTIT----LLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~-~~~~---~~~~~~nv~~~~~----l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.++|++||++|....... ..++ .+.+++|+.++.. +++.+++.+.++||++||...+. +..
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~-----------~~~ 154 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER-----------VRR 154 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC-----------CCC
Confidence 269999999997532111 1111 1368999998876 45566666678999999986431 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.||.+...+.+.++.+. .++++++++||.+..+
T Consensus 155 ~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~ 195 (253)
T PRK07904 155 SNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR 195 (253)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence 44679999999998877665442 4799999999988754
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=156.05 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=129.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
||+++||||+|+||++++++|+++|++|++++|+....+.....+. +.++.++.+|++|.+++.++++.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 74 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAAT 74 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999987655443322221 34688899999999998887653
Q ss_pred -CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+||||||...... ..+..+..+++|+.++.++++++.. .+.++||++||...+. +.
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~ 143 (260)
T PRK08267 75 GGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIY-----------GQ 143 (260)
T ss_pred CCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCc-----------CC
Confidence 25799999999754322 2234566889999999999887653 3456999999975431 12
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.....|+.+|.+.+.+++.++.+. .++++++++|+.+-.+
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~ 185 (260)
T PRK08267 144 PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTA 185 (260)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCc
Confidence 234689999999999999887653 3799999999887653
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=157.96 Aligned_cols=165 Identities=17% Similarity=0.150 Sum_probs=126.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
||+++||||+|+||+++++.|+++|++|++++|+....... . ..++.++.+|++|.+++.++++..
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~----~------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 70 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL----A------AAGFTAVQLDVNDGAALARLAEELEAEH 70 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----H------HCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999875443221 1 124678899999999988877532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH---cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA---HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~---~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.....+++|+.++.++++++.. .+.+++|++||...+. +...
T Consensus 71 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 139 (274)
T PRK05693 71 GGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL-----------VTPF 139 (274)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC-----------CCCC
Confidence 6899999999654332 2234556889999999988887643 2346899999976542 2233
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
...|+.+|.+.+.+++.++.+. .++++++++||.+..+
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 5679999999999988877653 4899999999998765
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=151.88 Aligned_cols=224 Identities=15% Similarity=0.123 Sum_probs=155.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|+++++... ....+.+... +.++..+.+|++|.+++.+++++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL----GRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999998876532 2223333322 346778899999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+++...+++|+.++.++++++... + -+++|++||...+.. .
T Consensus 84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 152 (253)
T PRK08993 84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQG-----------G 152 (253)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccC-----------C
Confidence 6999999999754322 23456778999999999888876532 2 258999999877632 2
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+++.++.+. .++.+..++||.+-.+-.. .... -......... . ++
T Consensus 153 ~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~-------~~~~-~~~~~~~~~~-~---~p------ 214 (253)
T PRK08993 153 IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQ-------QLRA-DEQRSAEILD-R---IP------ 214 (253)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchh-------hhcc-chHHHHHHHh-c---CC------
Confidence 234589999999999999888774 3799999999988654210 0000 0001111111 1 11
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.+ -+...+|+++++.+++.... ....|+.+.+.++
T Consensus 215 ---~~----r~~~p~eva~~~~~l~s~~~-~~~~G~~~~~dgg 249 (253)
T PRK08993 215 ---AG----RWGLPSDLMGPVVFLASSAS-DYINGYTIAVDGG 249 (253)
T ss_pred ---CC----CCcCHHHHHHHHHHHhCccc-cCccCcEEEECCC
Confidence 11 25678999999999887632 2356777777554
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=152.55 Aligned_cols=236 Identities=16% Similarity=0.125 Sum_probs=156.5
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
|+|+++|||| |+||++++++|. +|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++.
T Consensus 1 ~~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~i~~~~~~~~~~ 74 (275)
T PRK06940 1 MKEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA----GFDVSTQEVDVSSRESVKALAATAQTL 74 (275)
T ss_pred CCCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEeecCCHHHHHHHHHHHHhc
Confidence 8899999998 799999999996 8999999998765544444443321 34678899999999999888763
Q ss_pred CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCC-C-------CCCCCC--
Q 040584 77 TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPK-V-------VPCTEE-- 144 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~-~-------~~~~e~-- 144 (347)
.++|+||||||... ..+++..++++|+.++.++++++... .-+++|++||........ . ...+..
T Consensus 75 g~id~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (275)
T PRK06940 75 GPVTGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEEL 151 (275)
T ss_pred CCCCEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccc
Confidence 25999999999753 23457789999999999999887653 124677788765432110 0 000000
Q ss_pred --C----C---CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcC
Q 040584 145 --F----P---LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVG 213 (347)
Q Consensus 145 --~----~---~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (347)
. + ......|+.||.+.+.+.+.++.++ .++.+.++.||.+-.+... . ...........+...
T Consensus 152 ~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~----~--~~~~~~~~~~~~~~~- 224 (275)
T PRK06940 152 LSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQ----D--ELNGPRGDGYRNMFA- 224 (275)
T ss_pred cccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccch----h--hhcCCchHHHHHHhh-
Confidence 0 1 0235679999999999999887765 4799999999988765210 0 000000011111111
Q ss_pred CCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 214 RRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 214 ~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. .+ ..-+...+|+|+++.+++... .....++++.+.++.
T Consensus 225 ~---~p-------------~~r~~~peeia~~~~fL~s~~-~~~itG~~i~vdgg~ 263 (275)
T PRK06940 225 K---SP-------------AGRPGTPDEIAALAEFLMGPR-GSFITGSDFLVDGGA 263 (275)
T ss_pred h---CC-------------cccCCCHHHHHHHHHHHcCcc-cCcccCceEEEcCCe
Confidence 1 00 112567899999999988642 234567888886664
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-18 Score=151.75 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=125.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH---HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA---VAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
++++||||+|+||+++++.|+++|++|++++|+....... .+.+.......+.++..+.+|+++.+++.++++..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 86 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAVE 86 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999876532111 11111111112446788999999999998887642
Q ss_pred ---CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||....... .+.++..+++|+.++.++++++... +-+++|++||..... ..+
T Consensus 87 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---------~~~ 157 (273)
T PRK08278 87 RFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD---------PKW 157 (273)
T ss_pred HhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc---------ccc
Confidence 69999999997543322 2334567889999999999987642 345899999864321 011
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFN 183 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~ 183 (347)
..+...|+.+|.++|.+++.++.+. .+++++.+.|+.
T Consensus 158 ~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~ 196 (273)
T PRK08278 158 FAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRT 196 (273)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Confidence 2456789999999999999998875 378888888874
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=157.18 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=129.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||+++++.|+++|++|++++|+.+..+...+.+... +..+.++.+|+.|.+++.++++..
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~----~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA----GGDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999866554444444322 335778899999999998887621
Q ss_pred CCcEEEEccccccCCccc------cCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESV------QKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~------~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||........ +.....+++|+.++..+++++. +.+.+++|++||..+++. +.
T Consensus 117 ~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------~~ 186 (293)
T PRK05866 117 GVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE----------AS 186 (293)
T ss_pred CCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC----------CC
Confidence 689999999975433221 2234578899999888877643 556679999999766531 12
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.....|+.+|.+.+.+++.++.+. .++.+++++||.+-.+
T Consensus 187 p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~ 228 (293)
T PRK05866 187 PLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATP 228 (293)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCc
Confidence 234689999999999998887664 3799999999866543
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=150.51 Aligned_cols=227 Identities=14% Similarity=0.078 Sum_probs=152.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+++++||||+|+||.++++.|+++|+.|+++.|+... .....+.+... +.++.++.+|++|.+++.++++..
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA----GGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----CCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999888775432 22223333221 346778899999999988876532
Q ss_pred --CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHH----HHHHcC-CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLE----VMAAHG-CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~----~~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||....... .+.++..+++|+.++..+++ .+++.+ -+++|++||...+ .+
T Consensus 83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~-----------~~ 151 (261)
T PRK08936 83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ-----------IP 151 (261)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc-----------CC
Confidence 58999999997543222 23445678899888776544 445444 3589999997543 24
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
......|+.+|.+.+.+.+.++.+. .++++++++||.+..|... ..... ......... . .+
T Consensus 152 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~------~~~~~--~~~~~~~~~-~---~~----- 214 (261)
T PRK08936 152 WPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINA------EKFAD--PKQRADVES-M---IP----- 214 (261)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccc------cccCC--HHHHHHHHh-c---CC-----
Confidence 4556789999999998888776654 4899999999998876210 00000 011111111 1 00
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++.+++.... ....+..+.+.++.
T Consensus 215 --------~~~~~~~~~va~~~~~l~s~~~-~~~~G~~i~~d~g~ 250 (261)
T PRK08936 215 --------MGYIGKPEEIAAVAAWLASSEA-SYVTGITLFADGGM 250 (261)
T ss_pred --------CCCCcCHHHHHHHHHHHcCccc-CCccCcEEEECCCc
Confidence 1125678999999999887522 23566777776553
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-19 Score=170.76 Aligned_cols=225 Identities=16% Similarity=0.139 Sum_probs=158.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|.||.++++.|+++|++|++++|+....+...+.+ +.+...+.+|++|.+++.++++..
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL-------GDEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998765444333221 235667899999999988877642
Q ss_pred -CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|+||||||.... . .+.+.+...+++|+.++.++++++... +.++||++||...+. +...
T Consensus 342 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 410 (520)
T PRK06484 342 GRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL-----------ALPP 410 (520)
T ss_pred CCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC-----------CCCC
Confidence 58999999997521 1 123455678999999999998887653 345899999987652 3345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+++.++.++ .+++++++.||.+..+..... ...-........... +
T Consensus 411 ~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-------~~~~~~~~~~~~~~~----~-------- 471 (520)
T PRK06484 411 RNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLAL-------KASGRADFDSIRRRI----P-------- 471 (520)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhh-------ccccHHHHHHHHhcC----C--------
Confidence 5789999999999999988775 379999999999877521100 000000111111110 0
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+|+++++++... .....++++.+.++.
T Consensus 472 -----~~~~~~~~dia~~~~~l~s~~-~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 472 -----LGRLGDPEEVAEAIAFLASPA-ASYVNGATLTVDGGW 507 (520)
T ss_pred -----CCCCcCHHHHHHHHHHHhCcc-ccCccCcEEEECCCc
Confidence 112467899999999988652 234577888887663
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=153.41 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=153.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+.+..+... .. .+.++..+.+|+.|.+++.+++++.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~----~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE----AA---HGDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----hh---cCCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999988754433221 11 1346778899999998888777532
Q ss_pred -CCcEEEEccccccCC-c----cc----cCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG-E----SV----QKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 -~~d~vih~a~~~~~~-~----~~----~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||..... . .. +.+...+++|+.++..+++++... .-+++|++||...+-
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~---------- 147 (262)
T TIGR03325 78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY---------- 147 (262)
T ss_pred CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec----------
Confidence 689999999964211 1 11 134568999999999998887643 224789888876541
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 222 (347)
+......|+.+|.+.+.+++.++.+. +.+++.++.||.+..+-......... ...+.. ......... .+
T Consensus 148 -~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~p--- 218 (262)
T TIGR03325 148 -PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMA--DKSISTVPLGDMLKSV---LP--- 218 (262)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccc--cccccccchhhhhhhc---CC---
Confidence 22334679999999999999998886 34889999999887652110000000 000000 011111111 00
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++.+++.........++++.+.++.
T Consensus 219 ----------~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg~ 255 (262)
T TIGR03325 219 ----------IGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGGM 255 (262)
T ss_pred ----------CCCCCChHHhhhheeeeecCCCcccccceEEEecCCe
Confidence 1125578999999988876522223467888886653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=149.88 Aligned_cols=227 Identities=16% Similarity=0.134 Sum_probs=156.4
Q ss_pred CceEEEEcCCC-cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVG-YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG-~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+++++||||+| .||+++++.|+++|++|++++|+....+...+.+....+ ..++..+.+|+++.+++.++++..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG--LGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47899999998 699999999999999999998876655444444433111 236778999999999888877532
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||...... ..+.+...+++|+.++..+++++.. .+ .+++|++||...+ .+
T Consensus 95 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~-----------~~ 163 (262)
T PRK07831 95 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW-----------RA 163 (262)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc-----------CC
Confidence 5899999999643322 2234556788899999988777553 23 4589999886543 12
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
......|+.+|.+.+.+++.++.+. .++++++++||.+..|... .. . -......+.... .+
T Consensus 164 ~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~-----~~-~---~~~~~~~~~~~~--~~------ 226 (262)
T PRK07831 164 QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLA-----KV-T---SAELLDELAARE--AF------ 226 (262)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccc-----cc-c---CHHHHHHHHhcC--CC------
Confidence 3455689999999999999998764 4799999999998876210 00 0 011222222211 11
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.-+...+|+++++.+++... .....|+++.+.++
T Consensus 227 ---------~r~~~p~~va~~~~~l~s~~-~~~itG~~i~v~~~ 260 (262)
T PRK07831 227 ---------GRAAEPWEVANVIAFLASDY-SSYLTGEVVSVSSQ 260 (262)
T ss_pred ---------CCCcCHHHHHHHHHHHcCch-hcCcCCceEEeCCC
Confidence 12456789999999988752 22356777777553
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=151.30 Aligned_cols=234 Identities=16% Similarity=0.064 Sum_probs=151.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|.||++++++|+++|++|++++|+....+...+.+.. ..++.++.+|++|.+++.+++++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKE-----YGEVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999886655444444432 135778999999999998877532
Q ss_pred CCcEEEEccccccCC--c----cccCcchhhhhhhhHHHHHHHH----HH-HcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG--E----SVQKPLPYFDNNLTGTITLLEV----MA-AHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ~~d~vih~a~~~~~~--~----~~~~~~~~~~~nv~~~~~l~~~----~~-~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||..... . ..+++...+.+|+.++..+... +. +.+.++||++||...+. +
T Consensus 76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~-----------~ 144 (259)
T PRK08340 76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE-----------P 144 (259)
T ss_pred CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC-----------C
Confidence 699999999964311 1 1122334567787776655443 32 23346899999987642 3
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCC-CCCCCCCCCccHH-HHHHHHcCCCCceEEec
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMP-FVTQVAVGRRPALTVFG 222 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 222 (347)
..+...|+.+|.+.+.+++.++.++ .++.+..+.||.+-.|..... ............. +...... + .
T Consensus 145 ~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~---- 216 (259)
T PRK08340 145 MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLE-R---T---- 216 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhc-c---C----
Confidence 3445689999999999999998875 368888899887655410000 0000000000000 0001110 0 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
...-+...+|+|+++.+++... .....|+++.+.+|..
T Consensus 217 ---------p~~r~~~p~dva~~~~fL~s~~-~~~itG~~i~vdgg~~ 254 (259)
T PRK08340 217 ---------PLKRTGRWEELGSLIAFLLSEN-AEYMLGSTIVFDGAMT 254 (259)
T ss_pred ---------CccCCCCHHHHHHHHHHHcCcc-cccccCceEeecCCcC
Confidence 0112567899999999988752 2345778888876653
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=169.91 Aligned_cols=238 Identities=20% Similarity=0.201 Sum_probs=157.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+....+ ...+..+.+|++|.+++.+++++.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~--~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFG--AGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcC--CCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999876655443333322111 235678899999999998888643
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHH----HHHcC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEV----MAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~----~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||....... .+.+...+++|+.+...+... +++.+ .++||++||...+. +.
T Consensus 492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~-----------~~ 560 (676)
T TIGR02632 492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY-----------AG 560 (676)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC-----------CC
Confidence 68999999997543322 223455778888888776544 33333 34899999975531 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeeccccc-CCCCCCCCCCCC-CC-CCcc-HHHHHHHHcCCCCceEEe
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPV-GAHPSGKGEDPR-GI-PNNL-MPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~-G~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~ 221 (347)
.....|+.+|.+.+.+++.++.+. .++++.+++|+.++ |.+. +.+.... .. ...+ ...+.....
T Consensus 561 ~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------- 630 (676)
T TIGR02632 561 KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGI-WDGEWREERAAAYGIPADELEEHYA--------- 630 (676)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCccc-ccccchhhhhhcccCChHHHHHHHH---------
Confidence 345789999999999999988764 37899999999887 3210 0000000 00 0000 000001000
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.......+++.+|+|+++.+++... .....+.++++.+|..
T Consensus 631 -------~r~~l~r~v~peDVA~av~~L~s~~-~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 -------KRTLLKRHIFPADIAEAVFFLASSK-SEKTTGCIITVDGGVP 671 (676)
T ss_pred -------hcCCcCCCcCHHHHHHHHHHHhCCc-ccCCcCcEEEECCCch
Confidence 1122234688999999999887642 2245678999987753
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=153.56 Aligned_cols=169 Identities=22% Similarity=0.241 Sum_probs=123.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
||+++||||+|+||++++++|+++|++|++++|+..+. .+.+.. ....++.++.+|++|.+++.++++..
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~---~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKE---LTKLAE---QYNSNLTFHSLDLQDVHELETNFNEILSSI 74 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHH---HHHHHh---ccCCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 37999999999999999999999999999999875321 111111 12346788999999999998877632
Q ss_pred -----CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHHH----HcC-CCeEEEeccccccCCCCCCCCC
Q 040584 78 -----KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVMA----AHG-CKNLVFSSSATAYGWPKVVPCT 142 (347)
Q Consensus 78 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~----~~~-~~~iv~~SS~~~yg~~~~~~~~ 142 (347)
..+++||+||.... ..+.+.+...+++|+.++..+++.+. +.+ .++||++||...+
T Consensus 75 ~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~--------- 145 (251)
T PRK06924 75 QEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK--------- 145 (251)
T ss_pred CcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc---------
Confidence 12289999996432 11234455678889998776665543 322 4589999997654
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCC
Q 040584 143 EEFPLQAMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGA 187 (347)
Q Consensus 143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~ 187 (347)
.+..+...|+.+|.+.+.+++.++.+. .++++.+++||.+-.+
T Consensus 146 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 192 (251)
T PRK06924 146 --NPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTN 192 (251)
T ss_pred --CCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccH
Confidence 244556789999999999999887663 3688999999877643
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=148.98 Aligned_cols=171 Identities=17% Similarity=0.184 Sum_probs=125.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHHHc----c
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVVFA----G 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~----~ 76 (347)
++++||||+|+||+++++.|+++|++|++++|+....+...+.+... .......+.+|+.+ .+++.++++ .
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA---GHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc---CCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999876555444443322 12345678889875 334444332 1
Q ss_pred --CCCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 77 --TKFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 77 --~~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
..+|+|||+||.... .+ ..+++...+++|+.++.++++++.. .+.+++|++||.... .
T Consensus 84 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~-----------~ 152 (239)
T PRK08703 84 TQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE-----------T 152 (239)
T ss_pred hCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc-----------c
Confidence 158999999996421 11 2233455789999999888877654 345699999986542 2
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhcC---CceEEEeecccccCC
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSDS---EWKIILLRYFNPVGA 187 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~---~~~~~~lR~~~v~G~ 187 (347)
+......|+.+|.+.+.+++.++.+.. ++++++++||.+.+|
T Consensus 153 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~ 197 (239)
T PRK08703 153 PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSP 197 (239)
T ss_pred CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCc
Confidence 333456899999999999998888752 589999999999987
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=148.58 Aligned_cols=220 Identities=14% Similarity=0.093 Sum_probs=150.4
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----C
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-----K 78 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 78 (347)
|+||||+|+||.+++++|+++|++|+++.|+.. ......+.+... +.++.++.+|++|.+++.+++++. .
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQ----GGNARLLQFDVADRVACRTLLEADIAEHGA 76 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----CCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999998876543 233333333322 346889999999999988876531 5
Q ss_pred CcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHH-----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMA-----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 79 ~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~-----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
+|++||+||..... ...+++...+++|+.++.++++++. +.+.++||++||...+. +...
T Consensus 77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~-----------~~~~ 145 (239)
T TIGR01831 77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVM-----------GNRG 145 (239)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhcc-----------CCCC
Confidence 79999999964322 1334566789999999999988652 23456899999975431 2234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+.+.++.++ .+++++.++||.+.++.. ....+....... . .++
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-----------~~~~~~~~~~~~-~-~~~--------- 203 (239)
T TIGR01831 146 QVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEML-----------AEVEHDLDEALK-T-VPM--------- 203 (239)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccc-----------hhhhHHHHHHHh-c-CCC---------
Confidence 4679999999999888887664 479999999998876521 011111111111 1 011
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
..+...+|+++++.+++.... ....+....+.++
T Consensus 204 ------~~~~~~~~va~~~~~l~~~~~-~~~~g~~~~~~gg 237 (239)
T TIGR01831 204 ------NRMGQPAEVASLAGFLMSDGA-SYVTRQVISVNGG 237 (239)
T ss_pred ------CCCCCHHHHHHHHHHHcCchh-cCccCCEEEecCC
Confidence 123467999999999887522 2345566666544
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=152.81 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=151.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC---------chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD---------NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
+++++||||++.||.+++++|++.|++|++++|+. .......+.+.. .+.++..+.+|++|.+++.+
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVA----AGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHh----cCCceEEEeCCCCCHHHHHH
Confidence 47899999999999999999999999999887764 222222333322 13467788999999998887
Q ss_pred HHccC-----CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHH----cC------CCeEEEecccccc
Q 040584 73 VFAGT-----KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAA----HG------CKNLVFSSSATAY 133 (347)
Q Consensus 73 ~~~~~-----~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~------~~~iv~~SS~~~y 133 (347)
+++.. ++|++|||||..... ...+.+...+++|+.++..+++++.. .. .++||++||...+
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~ 161 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGL 161 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhC
Confidence 76532 689999999975422 12345567899999999988776542 11 2489999997653
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH
Q 040584 134 GWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA 211 (347)
Q Consensus 134 g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (347)
. +......|+.+|.+.+.+.+.++.+. .++++..+.|+ +..+ . .........
T Consensus 162 ~-----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~-----------~---~~~~~~~~~ 215 (286)
T PRK07791 162 Q-----------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTR-----------M---TETVFAEMM 215 (286)
T ss_pred c-----------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCC-----------c---chhhHHHHH
Confidence 1 22345689999999999999887764 37899999886 3221 0 001111111
Q ss_pred cCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 212 VGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 212 ~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
... . .+ ...+...+|+++++++++... .....++.+.+.++...
T Consensus 216 ~~~----~---------~~--~~~~~~pedva~~~~~L~s~~-~~~itG~~i~vdgG~~~ 259 (286)
T PRK07791 216 AKP----E---------EG--EFDAMAPENVSPLVVWLGSAE-SRDVTGKVFEVEGGKIS 259 (286)
T ss_pred hcC----c---------cc--ccCCCCHHHHHHHHHHHhCch-hcCCCCcEEEEcCCceE
Confidence 100 0 01 112457899999999988652 22356788888766543
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=150.66 Aligned_cols=228 Identities=11% Similarity=0.070 Sum_probs=149.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+++||++++++|+++|++|+++.|+.. ........+... .+.++.++.+|++|.+++.++++..
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK---YGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999999999988765432 222222233221 2346789999999999998877642
Q ss_pred --CCcEEEEccccccC------Cc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV------GE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 78 --~~d~vih~a~~~~~------~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~ 141 (347)
++|+||||||.... .. ..+.....+++|+.+...+.+.+ ++.+.++||++||...+-
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 157 (260)
T PRK08416 85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV------- 157 (260)
T ss_pred cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc-------
Confidence 58999999985321 11 12234457777888777655544 333456999999975431
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
+......|+.+|.+.+.+++.++.++ .++++.++.||.+-.+.. . ... .............
T Consensus 158 ----~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~----~---~~~-~~~~~~~~~~~~~----- 220 (260)
T PRK08416 158 ----YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDAL----K---AFT-NYEEVKAKTEELS----- 220 (260)
T ss_pred ----CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhh----h---hcc-CCHHHHHHHHhcC-----
Confidence 22344689999999999999998875 379999999987654310 0 000 0011111111100
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++++++.... ....++.+.+.++.
T Consensus 221 ------------~~~r~~~p~~va~~~~~l~~~~~-~~~~G~~i~vdgg~ 257 (260)
T PRK08416 221 ------------PLNRMGQPEDLAGACLFLCSEKA-SWLTGQTIVVDGGT 257 (260)
T ss_pred ------------CCCCCCCHHHHHHHHHHHcChhh-hcccCcEEEEcCCe
Confidence 01125679999999999886522 23567888876653
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=148.25 Aligned_cols=171 Identities=18% Similarity=0.203 Sum_probs=125.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC--CHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR--DKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~~~~~~~~~~~-- 77 (347)
+++|+||||+|+||.++++.|++.|++|++++|+..+.+...+.+... ...++.++.+|+. +.+++.++++..
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA---GGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999876554444444332 1235667777875 566555544321
Q ss_pred ---CCcEEEEccccccC-----CccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV-----GESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 ---~~d~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+|||+||.... ....+.+...+++|+.++.++++++. +.+.++||++||.....
T Consensus 89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~----------- 157 (247)
T PRK08945 89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ----------- 157 (247)
T ss_pred HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC-----------
Confidence 58999999986432 12234456788999999888888764 45677999999976531
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccC
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVG 186 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G 186 (347)
+......|+.+|.+++.+++.++.+. .++++++++|+.+-.
T Consensus 158 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t 200 (247)
T PRK08945 158 GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRT 200 (247)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccC
Confidence 22344689999999999998887764 368888888887654
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=148.63 Aligned_cols=232 Identities=16% Similarity=0.121 Sum_probs=156.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
++++||||+|.||.++++.|+++|++|++++|+....+...+.+... ...++..+.+|++|.+++.++++.. ++|+
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA---HGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 68999999999999999999999999999998766554444433322 1346788999999999999888754 5999
Q ss_pred EEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCch
Q 040584 82 VIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPY 153 (347)
Q Consensus 82 vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y 153 (347)
+|||||...... ..+.+...+++|+.++..+++++. +.+.+++|++||.... .+......|
T Consensus 85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~-----------~~~~~~~~y 153 (259)
T PRK06125 85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE-----------NPDADYICG 153 (259)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc-----------CCCCCchHh
Confidence 999999653222 233456678899999998877653 3344589999986542 133345678
Q ss_pred hhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc---CCCCceEEecccCCCC
Q 040584 154 GRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV---GRRPALTVFGTDYSTK 228 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~ 228 (347)
+.+|.+.+.+++.++.+. .+++++.+.||.+..|. +...+..... +....+..+-
T Consensus 154 ~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~--------------~~~~~~~~~~~~~~~~~~~~~~~------ 213 (259)
T PRK06125 154 SAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDR--------------MLTLLKGRARAELGDESRWQELL------ 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHH--------------HHHHHHhhhhcccCCHHHHHHHh------
Confidence 999999999999887654 37999999998876541 0001100000 0000000000
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+...+|+++++++++... .....+..+.+.++.
T Consensus 214 ~~~~~~~~~~~~~va~~~~~l~~~~-~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 214 AGLPLGRPATPEEVADLVAFLASPR-SGYTSGTVVTVDGGI 253 (259)
T ss_pred ccCCcCCCcCHHHHHHHHHHHcCch-hccccCceEEecCCe
Confidence 0000112568899999999888642 223567888887664
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-18 Score=148.55 Aligned_cols=226 Identities=16% Similarity=0.148 Sum_probs=148.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH----HHHc--
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE----VVFA-- 75 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~----~~~~-- 75 (347)
++++||||+|+||++++++|+++|++|+++.|+. +......+.+... ...+...+.+|++|.+++. ++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 78 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNAR---RPNSAVTCQADLSNSATLFSRCEAIIDAC 78 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhc---cCCceEEEEccCCCchhhHHHHHHHHHHH
Confidence 5799999999999999999999999999876543 3333333333221 1235667899999987543 3332
Q ss_pred --cC-CCcEEEEccccccCCcccc---------------CcchhhhhhhhHHHHHHHHHHHcC----------CCeEEEe
Q 040584 76 --GT-KFDAVIHFAGLKAVGESVQ---------------KPLPYFDNNLTGTITLLEVMAAHG----------CKNLVFS 127 (347)
Q Consensus 76 --~~-~~d~vih~a~~~~~~~~~~---------------~~~~~~~~nv~~~~~l~~~~~~~~----------~~~iv~~ 127 (347)
.. ++|+||||||........+ .....+++|+.++..+++++.... ..++|++
T Consensus 79 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~ 158 (267)
T TIGR02685 79 FRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNL 158 (267)
T ss_pred HHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEe
Confidence 11 5999999999643322111 134578999999999987654321 2368888
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH
Q 040584 128 SSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP 205 (347)
Q Consensus 128 SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~ 205 (347)
||.... .+..+..+|+.+|.+++.+++.++.+. .++++++++||.+..|. .... .
T Consensus 159 ~s~~~~-----------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~---------~~~~---~ 215 (267)
T TIGR02685 159 CDAMTD-----------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPD---------AMPF---E 215 (267)
T ss_pred hhhhcc-----------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCcc---------ccch---h
Confidence 776442 234556789999999999999987774 47999999999886541 0000 0
Q ss_pred HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 206 FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....... .. ++ + ......+|+++++++++... .....++.+.+.++..+
T Consensus 216 ~~~~~~~-~~-~~-----------~---~~~~~~~~va~~~~~l~~~~-~~~~~G~~~~v~gg~~~ 264 (267)
T TIGR02685 216 VQEDYRR-KV-PL-----------G---QREASAEQIADVVIFLVSPK-AKYITGTCIKVDGGLSL 264 (267)
T ss_pred HHHHHHH-hC-CC-----------C---cCCCCHHHHHHHHHHHhCcc-cCCcccceEEECCceec
Confidence 1111111 10 00 0 11357899999999988752 22356788888766544
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-18 Score=150.99 Aligned_cols=166 Identities=20% Similarity=0.149 Sum_probs=123.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
+|+++||||+|+||++++++|+++|+.|++.++... ..+...+.+... +.++..+.+|++|.+++.++++.
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA----GAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999999999998887543 233333333322 34678899999999988887753
Q ss_pred CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--------C---CCeEEEeccccccCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--------G---CKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--------~---~~~iv~~SS~~~yg~~~~~~~ 141 (347)
-++|+||||||...... +.+++...+++|+.++.++++++... + .++||++||...+.
T Consensus 88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 160 (306)
T PRK07792 88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV------- 160 (306)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc-------
Confidence 15899999999754321 23445668899999999998876421 1 24899999976542
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecc
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYF 182 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~ 182 (347)
+......|+.+|.+.+.+++.++.+. .++.+.++.|+
T Consensus 161 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 161 ----GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 12234579999999999999887764 36888887775
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-18 Score=148.87 Aligned_cols=171 Identities=23% Similarity=0.244 Sum_probs=127.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||.++++.|+++|+.|++++|+.+..+...+.+.... .....++.+|++|.+++.+++++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG---GTVPEHRALDISDYDAVAAFAADIHAAHG 77 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999887655444444443321 123455789999999888776542
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----c-CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----H-GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~-~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+.+...+++|+.++..+++++.. . ..++||++||...+. +..
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~-----------~~~ 146 (272)
T PRK07832 78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV-----------ALP 146 (272)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC-----------CCC
Confidence 5899999999654322 2334466889999999999988642 2 235899999976431 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.+|.+.+.+.+.++.+. .++++++++||.+.+|
T Consensus 147 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~ 187 (272)
T PRK07832 147 WHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTP 187 (272)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc
Confidence 45679999999888887776542 4799999999999876
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=152.48 Aligned_cols=170 Identities=19% Similarity=0.159 Sum_probs=129.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|.||.++++.|+++|++|++++|+....+...+.+. . ...+..+.+|++|.+++.+++++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~---~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG---G--DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---C--CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999987655443333321 1 234566779999999988876532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.....+++|+.++.++++++... +.++||++||...+. +...
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 152 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA-----------AAPG 152 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC-----------CCCC
Confidence 6899999999754322 22344567889999999998876532 235899999987763 2334
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
...|+.+|.+.+.+++.++.+. .++.++++.||.+..+
T Consensus 153 ~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~ 192 (296)
T PRK05872 153 MAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTD 192 (296)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccch
Confidence 5689999999999998876653 4789999999888664
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=151.83 Aligned_cols=165 Identities=21% Similarity=0.168 Sum_probs=124.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
||+++||||+|+||++++++|+++|++|++++|+..... . .. .+.++.++.+|+.|.+++.+++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~--~---~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 71 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL--A---AA----AGERLAEVELDLSDAAAAAAWLAGDLLAA 71 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh--h---hc----cCCeEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999988754311 1 11 134678899999999988885532
Q ss_pred ----CCCcEEEEccccccCC-c----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCC
Q 040584 77 ----TKFDAVIHFAGLKAVG-E----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 77 ----~~~d~vih~a~~~~~~-~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
..+|++|||||..... . ..+.+...+++|+.++..+.+.+.. .+.++||++||...+.
T Consensus 72 ~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--------- 142 (243)
T PRK07023 72 FVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN--------- 142 (243)
T ss_pred hccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC---------
Confidence 1589999999965321 1 2234466788999997777665543 3456999999987653
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhh-cCCceEEEeecccccC
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRS-DSEWKIILLRYFNPVG 186 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G 186 (347)
+..+...|+.+|...|.+++.++.+ ..++++.+++||.+-.
T Consensus 143 --~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t 184 (243)
T PRK07023 143 --AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDT 184 (243)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Confidence 3445678999999999999988765 2478999999987644
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=146.81 Aligned_cols=223 Identities=15% Similarity=0.118 Sum_probs=152.7
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+ +.||+.++++|+++|++|++..|+. +.. +.+.++. ..++.++.+|++|.++++++++..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~---~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMK---KSLQKLV---DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHH---HHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 4789999999 7999999999999999999988863 222 2222221 235778999999999988876532
Q ss_pred ---CCcEEEEccccccC----C----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV----G----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~----~----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||.... . ...++++..+++|+.++..+++++... +-+++|++||....
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~----------- 148 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSE----------- 148 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcc-----------
Confidence 59999999996432 1 122345668889999999888876643 23589999987542
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.+|.+.+.+.+.++.+. .++++.++.||.+-.+... .... -......... . .+
T Consensus 149 ~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~-------~~~~-~~~~~~~~~~-~---~p--- 213 (252)
T PRK06079 149 RAIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVT-------GIKG-HKDLLKESDS-R---TV--- 213 (252)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccc-------cCCC-hHHHHHHHHh-c---Cc---
Confidence 122345689999999999999988875 4799999999988654210 0000 0011121111 1 01
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
...+...+|+++++.+++... .....++++.+.++
T Consensus 214 ----------~~r~~~pedva~~~~~l~s~~-~~~itG~~i~vdgg 248 (252)
T PRK06079 214 ----------DGVGVTIEEVGNTAAFLLSDL-STGVTGDIIYVDKG 248 (252)
T ss_pred ----------ccCCCCHHHHHHHHHHHhCcc-cccccccEEEeCCc
Confidence 112567899999999988652 22456778877655
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=148.43 Aligned_cols=159 Identities=22% Similarity=0.297 Sum_probs=126.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+|+|||||..||.+++..|.++|..++.+.|...+.+...+++.+..... ++..+.+|++|.++..++++.
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~--~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE--KVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC--ccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999888888888887767777665422 688999999999999987632
Q ss_pred CCCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.++|++|||||....... .++....+++|+.|+..+.++ +++.+-+|||.+||+.-+ .+.+
T Consensus 90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~-----------~~~P 158 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK-----------MPLP 158 (282)
T ss_pred CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc-----------cCCC
Confidence 279999999998763221 223345889999998877665 445555799999998765 2344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDSE 173 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~~ 173 (347)
....|..||.+.+.+...+..+...
T Consensus 159 ~~~~Y~ASK~Al~~f~etLR~El~~ 183 (282)
T KOG1205|consen 159 FRSIYSASKHALEGFFETLRQELIP 183 (282)
T ss_pred cccccchHHHHHHHHHHHHHHHhhc
Confidence 4458999999999999999888643
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=144.48 Aligned_cols=224 Identities=12% Similarity=0.011 Sum_probs=148.8
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCc--------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDN--------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE 71 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (347)
+|+++||||+| .||++++++|+++|+.|+++.|... ..... ..+.+.....+.++..+.+|++|.+++.
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQ-IQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHH-HHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 47999999995 8999999999999999988754311 01111 1111111112456788999999999998
Q ss_pred HHHccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCC
Q 040584 72 VVFAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKV 138 (347)
Q Consensus 72 ~~~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~ 138 (347)
++++.. .+|+|||+||...... +.+.++..+++|+.++..+..++ ++.+.++||++||....
T Consensus 85 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~----- 159 (256)
T PRK12859 85 ELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ----- 159 (256)
T ss_pred HHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC-----
Confidence 887542 4899999999643321 23345567899999988885443 33344699999997654
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
.+..+...|+.+|.+++.+++.++.+. .+++++.++||.+-.+. +............
T Consensus 160 ------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~--------------~~~~~~~~~~~~~- 218 (256)
T PRK12859 160 ------GPMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGW--------------MTEEIKQGLLPMF- 218 (256)
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCC--------------CCHHHHHHHHhcC-
Confidence 234456789999999999999888764 47999999998875431 1111111111110
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
+ ...+...+|+++++.+++... .....++++.+.++
T Consensus 219 --~-------------~~~~~~~~d~a~~~~~l~s~~-~~~~~G~~i~~dgg 254 (256)
T PRK12859 219 --P-------------FGRIGEPKDAARLIKFLASEE-AEWITGQIIHSEGG 254 (256)
T ss_pred --C-------------CCCCcCHHHHHHHHHHHhCcc-ccCccCcEEEeCCC
Confidence 0 011346899999999887652 22346677776554
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=151.18 Aligned_cols=228 Identities=16% Similarity=0.141 Sum_probs=153.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|++|++++|+..... ..++.++.+|++|.++++++++..
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ-------------HENYQFVPTDVSSAEEVNHTVAEIIEKF 75 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc-------------cCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999988765432 236778899999999998877642
Q ss_pred -CCcEEEEccccccCC-------------ccccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG-------------ESVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 78 -~~d~vih~a~~~~~~-------------~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~ 139 (347)
.+|+|||+||..... ...+.+...+++|+.++..+++++... +.++||++||...+.
T Consensus 76 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----- 150 (266)
T PRK06171 76 GRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE----- 150 (266)
T ss_pred CCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC-----
Confidence 589999999964321 122344568889999999998887642 345899999987642
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeeccccc-CCCCCCCCCCCCCCCCcc-HH-HHHHHHcCC
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPV-GAHPSGKGEDPRGIPNNL-MP-FVTQVAVGR 214 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~-G~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 214 (347)
+......|+.+|.+.+.+++.++.+. .++++.+++||.+- .+................ .. .........
T Consensus 151 ------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (266)
T PRK06171 151 ------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTKTS 224 (266)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcccc
Confidence 22345789999999999999888764 37999999998874 111000000000000000 00 111111000
Q ss_pred CCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 215 RPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.+ ....+...+|+|+++.+++... .....++++++.+|.
T Consensus 225 --~~-------------p~~r~~~~~eva~~~~fl~s~~-~~~itG~~i~vdgg~ 263 (266)
T PRK06171 225 --TI-------------PLGRSGKLSEVADLVCYLLSDR-ASYITGVTTNIAGGK 263 (266)
T ss_pred --cc-------------cCCCCCCHHHhhhheeeeeccc-cccceeeEEEecCcc
Confidence 01 1122567899999999988752 224567888887664
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=146.55 Aligned_cols=170 Identities=19% Similarity=0.195 Sum_probs=127.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||.+++++|+++|++|++++|+..........+ . .+.++.++.+|++|.+++.++++..
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P----YPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h----cCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 378999999999999999999999999999998765544333332 1 2457888999999999888776531
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|+|||+||...... ..+.....+++|+.++.++++.+.. .+.+++|++||...+. +...
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~ 148 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI-----------GYPG 148 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc-----------CCCC
Confidence 5899999999754322 2233456788999999999887754 3346899998875431 2233
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
...|+.+|.+.+.+++.++.++ .++.++++.||.+..+
T Consensus 149 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~ 188 (263)
T PRK09072 149 YASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTA 188 (263)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccc
Confidence 4679999999999998887764 3688899988876553
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=146.70 Aligned_cols=225 Identities=16% Similarity=0.116 Sum_probs=150.9
Q ss_pred ceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++||||++ .||++++++|+++|++|++..|+....+. .+.+.... + ....+.+|++|.+++.++++..
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~---g-~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAESL---G-SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHhc---C-CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 7899999997 99999999999999999998876432222 22221111 1 2346889999999998877542
Q ss_pred --CCcEEEEccccccC--------CccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV--------GESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 --~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|++|||||.... ..+.+.+...+++|+.++.++++++... .-++||++||.....
T Consensus 83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~----------- 151 (271)
T PRK06505 83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR----------- 151 (271)
T ss_pred hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc-----------
Confidence 69999999996432 1123455668889999999888765532 125899999975431
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+......|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+... .... .....+...... ++
T Consensus 152 ~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~-------~~~~--~~~~~~~~~~~~-p~----- 216 (271)
T PRK06505 152 VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGA-------GIGD--ARAIFSYQQRNS-PL----- 216 (271)
T ss_pred cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccc-------cCcc--hHHHHHHHhhcC-Cc-----
Confidence 22345689999999999999988875 3799999999988654200 0000 001111111110 11
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..+...+|+++++++++... .....++++.+.++.
T Consensus 217 ----------~r~~~peeva~~~~fL~s~~-~~~itG~~i~vdgG~ 251 (271)
T PRK06505 217 ----------RRTVTIDEVGGSALYLLSDL-SSGVTGEIHFVDSGY 251 (271)
T ss_pred ----------cccCCHHHHHHHHHHHhCcc-ccccCceEEeecCCc
Confidence 12456899999999988652 223567888887664
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=143.45 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=145.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--CCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--KFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~d 80 (347)
|+++||||+|+||+++++.|+++|++|+++.|+.++.....+.+ ++..+.+|++|.+++.++++.. ++|
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~D~~~~~~v~~~~~~~~~~id 71 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL---------DVDAIVCDNTDPASLEEARGLFPHHLD 71 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCcEEecCCCCHHHHHHHHHHHhhcCc
Confidence 47999999999999999999999999999988754433222211 3567889999999999887643 589
Q ss_pred EEEEccccccC----C-----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAV----G-----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 81 ~vih~a~~~~~----~-----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|||||.... . ...+.+...+++|+.++.++++++... .-++||++||... ..
T Consensus 72 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~---------------~~ 136 (223)
T PRK05884 72 TIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP---------------PA 136 (223)
T ss_pred EEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC---------------CC
Confidence 99999984211 0 123455678999999999998887642 2358999998641 12
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+.+.++.++ .++++.++.||.+..+. .... . . .
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~------------------~~~~-~-~---~--------- 184 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPG------------------YDGL-S-R---T--------- 184 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchh------------------hhhc-c-C---C---------
Confidence 3679999999999999888875 36899999998765430 0000 0 0 0
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ .-..+|+++++.+++... .....++++.+.+|.
T Consensus 185 --p-----~~~~~~ia~~~~~l~s~~-~~~v~G~~i~vdgg~ 218 (223)
T PRK05884 185 --P-----PPVAAEIARLALFLTTPA-ARHITGQTLHVSHGA 218 (223)
T ss_pred --C-----CCCHHHHHHHHHHHcCch-hhccCCcEEEeCCCe
Confidence 0 116799999999887642 234567888776553
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-18 Score=147.49 Aligned_cols=227 Identities=17% Similarity=0.141 Sum_probs=152.4
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+|+++||||+ +.||++++++|+++|++|++..|+... .....+++... .....++.+|++|.+++.++++..
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP----LNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc----cCcceEeecCcCCHHHHHHHHHHH
Confidence 4789999986 799999999999999999887665432 22223333221 124567899999999998877543
Q ss_pred -----CCcEEEEccccccC----Cc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCC
Q 040584 78 -----KFDAVIHFAGLKAV----GE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCT 142 (347)
Q Consensus 78 -----~~d~vih~a~~~~~----~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~ 142 (347)
++|++|||||.... .. ..+.++..+++|+.++..+++++... .-++||++||....
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~--------- 152 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV--------- 152 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc---------
Confidence 69999999996421 11 23445678899999999888875532 12589999997543
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEE
Q 040584 143 EEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTV 220 (347)
Q Consensus 143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (347)
.+......|+.+|.+.+.+.+.++.+. .++++.++.||.+-.+..... .+ .......... . .
T Consensus 153 --~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~----~~----~~~~~~~~~~-~---~-- 216 (258)
T PRK07370 153 --RAIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV----GG----ILDMIHHVEE-K---A-- 216 (258)
T ss_pred --cCCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc----cc----chhhhhhhhh-c---C--
Confidence 123345689999999999999998875 368999999998865411000 00 0011111111 0 0
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+++++.+++... .....++++.+.++.
T Consensus 217 -----------p~~r~~~~~dva~~~~fl~s~~-~~~~tG~~i~vdgg~ 253 (258)
T PRK07370 217 -----------PLRRTVTQTEVGNTAAFLLSDL-ASGITGQTIYVDAGY 253 (258)
T ss_pred -----------CcCcCCCHHHHHHHHHHHhChh-hccccCcEEEECCcc
Confidence 0112556899999999988752 233567788776654
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=147.29 Aligned_cols=226 Identities=13% Similarity=0.095 Sum_probs=150.7
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+ +.||++++++|+++|+.|++.+|+.. .....+.+.... +.. ..+.+|++|.+++.++++..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~---~~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQEL---GSD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhc---CCc-eEEEecCCCHHHHHHHHHHHHH
Confidence 4799999997 79999999999999999999888642 112222222111 123 57889999999988877542
Q ss_pred ---CCcEEEEccccccC----C----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV----G----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~----~----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||.... . ...+.+...+++|+.++..+.+++... .-++||++||....
T Consensus 80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~----------- 148 (274)
T PRK08415 80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGV----------- 148 (274)
T ss_pred HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCc-----------
Confidence 68999999996431 1 123445668999999999888876542 12589999997542
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.||.+.+.+.+.++.+. .++++.++.||.+-.+..... . .. .......... .+
T Consensus 149 ~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-------~-~~-~~~~~~~~~~---~p--- 213 (274)
T PRK08415 149 KYVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGI-------G-DF-RMILKWNEIN---AP--- 213 (274)
T ss_pred cCCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhcc-------c-hh-hHHhhhhhhh---Cc---
Confidence 122334679999999999999988875 378999999988765410000 0 00 0000000000 00
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++.+++.... ....++.+.+.+|.
T Consensus 214 ----------l~r~~~pedva~~v~fL~s~~~-~~itG~~i~vdGG~ 249 (274)
T PRK08415 214 ----------LKKNVSIEEVGNSGMYLLSDLS-SGVTGEIHYVDAGY 249 (274)
T ss_pred ----------hhccCCHHHHHHHHHHHhhhhh-hcccccEEEEcCcc
Confidence 1124678999999999987521 23567888877664
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=152.99 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=131.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+++++||||++.||.++++.|+++| ++|+++.|+..+.....+.+. .....+..+.+|++|.+++.++++..
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~----~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 77 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG----MPKDSYTIMHLDLGSLDSVRQFVQQFRE 77 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc----CCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999 999999987665444333332 12346778899999999988776532
Q ss_pred ---CCcEEEEccccccCC-----ccccCcchhhhhhhhHHHHHHHHHH----HcC--CCeEEEeccccccCCCCC----C
Q 040584 78 ---KFDAVIHFAGLKAVG-----ESVQKPLPYFDNNLTGTITLLEVMA----AHG--CKNLVFSSSATAYGWPKV----V 139 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~--~~~iv~~SS~~~yg~~~~----~ 139 (347)
++|++|||||..... .+.+.++..+++|+.++..+++++. +.+ .++||++||...+..... .
T Consensus 78 ~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~ 157 (314)
T TIGR01289 78 SGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPP 157 (314)
T ss_pred hCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCC
Confidence 599999999964321 1234456688999999888866543 332 369999999877532100 0
Q ss_pred C------------------CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccC
Q 040584 140 P------------------CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVG 186 (347)
Q Consensus 140 ~------------------~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G 186 (347)
+ ..+..+..+...|+.||.+...+.++++++. .++.+++++||.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 158 KANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD 225 (314)
T ss_pred cccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence 0 0112233455779999999888888887654 379999999998853
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=145.85 Aligned_cols=227 Identities=14% Similarity=0.099 Sum_probs=150.0
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+ +.||.+++++|+++|++|+++.|+....+. .+.+.... .+.++..+.+|++|.++++++++..
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~-~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKE-VRELADTL--EGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHH-HHHHHHHc--CCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 3789999997 899999999999999999988775432222 22222211 1246778899999999988877532
Q ss_pred ---CCcEEEEccccccC----Cc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV----GE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~----~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||.... .. +.+.+...+++|+.++..+++++... ...+||++||....
T Consensus 84 ~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~----------- 152 (257)
T PRK08594 84 EVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE----------- 152 (257)
T ss_pred hCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc-----------
Confidence 59999999996431 11 12234457788999988877766542 23589999997642
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+... ... ........... . .
T Consensus 153 ~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~-------~~~-~~~~~~~~~~~-~---~---- 216 (257)
T PRK08594 153 RVVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAK-------GVG-GFNSILKEIEE-R---A---- 216 (257)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHh-------hhc-cccHHHHHHhh-c---C----
Confidence 123345689999999999999988875 3799999999887654100 000 00001111110 0 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....+...+|+++++++++... .....++++.+.++
T Consensus 217 ---------p~~r~~~p~~va~~~~~l~s~~-~~~~tG~~~~~dgg 252 (257)
T PRK08594 217 ---------PLRRTTTQEEVGDTAAFLFSDL-SRGVTGENIHVDSG 252 (257)
T ss_pred ---------CccccCCHHHHHHHHHHHcCcc-cccccceEEEECCc
Confidence 0112467899999999988652 22356777877655
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=143.52 Aligned_cols=225 Identities=19% Similarity=0.145 Sum_probs=151.4
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+ +.||.+++++|+++|++|++++|+....+. .+.+.... .....+.+|++|.+++.++++..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~-~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPY-VEPLAEEL----DAPIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHH-HHHHHHhh----ccceEEecCcCCHHHHHHHHHHHHH
Confidence 3789999998 599999999999999999998887543221 22222111 13457889999999998876542
Q ss_pred ---CCcEEEEccccccC----C----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV----G----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~----~----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||.... . .+.+.+...+++|+.++..+++.+... .-++||++||....
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~----------- 153 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE----------- 153 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc-----------
Confidence 58999999996432 1 123455678999999999998876542 12489999986542
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.+|.+.+.+.+.++.+. .++.+.++.||.+-.+... .. ............ . .+
T Consensus 154 ~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~-------~~-~~~~~~~~~~~~-~---~p--- 218 (258)
T PRK07533 154 KVVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAAS-------GI-DDFDALLEDAAE-R---AP--- 218 (258)
T ss_pred cCCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhh-------cc-CCcHHHHHHHHh-c---CC---
Confidence 122345679999999999999888775 3789999999887654210 00 001111122111 1 01
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
...+...+|+++++.+++... .....++.+.+.++
T Consensus 219 ----------~~r~~~p~dva~~~~~L~s~~-~~~itG~~i~vdgg 253 (258)
T PRK07533 219 ----------LRRLVDIDDVGAVAAFLASDA-ARRLTGNTLYIDGG 253 (258)
T ss_pred ----------cCCCCCHHHHHHHHHHHhChh-hccccCcEEeeCCc
Confidence 112567899999999988652 22456778877655
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=143.84 Aligned_cols=226 Identities=16% Similarity=0.106 Sum_probs=148.8
Q ss_pred CceEEEEcC--CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGG--VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGa--tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++|||| ++.||++++++|+++|++|++..|.. +.....+++.... .....+.+|++|.++++++++..
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAEL----DSELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhcc----CCceEEECCCCCHHHHHHHHHHHHH
Confidence 378999997 67999999999999999999887653 2222223332211 23457899999999999887532
Q ss_pred ---CCcEEEEccccccCC----c-----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVG----E-----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCT 142 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~----~-----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~ 142 (347)
++|++|||||..... . ..+.+...+++|+.++..+.+++... +-++||++||...+.
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~-------- 152 (261)
T PRK08690 81 HWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR-------- 152 (261)
T ss_pred HhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc--------
Confidence 699999999975421 1 11233456778999888777754431 225899999876541
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEE
Q 040584 143 EEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTV 220 (347)
Q Consensus 143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (347)
+......|+.+|.+.+.+.+.++.+. .++++.++.||.+-.+... ... ........+.. . .
T Consensus 153 ---~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~-------~~~-~~~~~~~~~~~-~---~-- 215 (261)
T PRK08690 153 ---AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAAS-------GIA-DFGKLLGHVAA-H---N-- 215 (261)
T ss_pred ---CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhh-------cCC-chHHHHHHHhh-c---C--
Confidence 23345689999999999998887664 3799999999887654110 000 00111111111 1 0
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+|+++.+++.... ....++++.+.+|.
T Consensus 216 -----------p~~r~~~peevA~~v~~l~s~~~-~~~tG~~i~vdgG~ 252 (261)
T PRK08690 216 -----------PLRRNVTIEEVGNTAAFLLSDLS-SGITGEITYVDGGY 252 (261)
T ss_pred -----------CCCCCCCHHHHHHHHHHHhCccc-CCcceeEEEEcCCc
Confidence 01125678999999999997522 24567888776664
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=143.66 Aligned_cols=227 Identities=16% Similarity=0.129 Sum_probs=152.7
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+ +.||.+++++|+++|++|++..|+.. .....+.+.+.. .....+.+|++|.++++++++..
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAEL----GAFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhc----CCceEEecCCCCHHHHHHHHHHHHH
Confidence 4789999997 89999999999999999988877522 122222222211 13456899999999999877542
Q ss_pred ---CCcEEEEccccccC----C----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV----G----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~----~----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||.... . ...+.+...+++|+.++..+++++... +-+++|++||....
T Consensus 85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~----------- 153 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE----------- 153 (272)
T ss_pred hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc-----------
Confidence 58999999997531 1 123345678899999999998876653 23589999986542
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.+|.+.+.+++.++.++ .++++.++.||.+-.+... ... .. .......... .+
T Consensus 154 ~~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~-------~~~-~~-~~~~~~~~~~---~p--- 218 (272)
T PRK08159 154 KVMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAAS-------GIG-DF-RYILKWNEYN---AP--- 218 (272)
T ss_pred cCCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHh-------cCC-cc-hHHHHHHHhC---Cc---
Confidence 122345679999999999999888875 3689999999887643100 000 00 0111111101 01
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
...+...+|+|+++++++... .....++++.+.++..
T Consensus 219 ----------~~r~~~peevA~~~~~L~s~~-~~~itG~~i~vdgG~~ 255 (272)
T PRK08159 219 ----------LRRTVTIEEVGDSALYLLSDL-SRGVTGEVHHVDSGYH 255 (272)
T ss_pred ----------ccccCCHHHHHHHHHHHhCcc-ccCccceEEEECCCce
Confidence 112467899999999998752 2345778888877753
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=143.46 Aligned_cols=167 Identities=19% Similarity=0.132 Sum_probs=126.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---K 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~ 78 (347)
|++++||||+|+||+++++.|++.|++|++++|+....+. +.. .+++++.+|++|.+++++++... +
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~----~~~------~~~~~~~~D~~~~~~v~~~~~~~~~~~ 70 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAA----LQA------LGAEALALDVADPASVAGLAWKLDGEA 70 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHH----HHh------ccceEEEecCCCHHHHHHHHHHhcCCC
Confidence 4789999999999999999999999999999887544322 211 14567899999999998875422 5
Q ss_pred CcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccc-cCCCCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATA-YGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 79 ~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~-yg~~~~~~~~e~~~~~ 148 (347)
+|+|||++|..... .+.++++..+++|+.++.++++++... ...++|++||... ++.. +..
T Consensus 71 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~---------~~~ 141 (222)
T PRK06953 71 LDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA---------TGT 141 (222)
T ss_pred CCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc---------cCC
Confidence 89999999975211 133455678999999999999887642 2347999998643 4321 112
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
+...|+.+|...+.+++.++.++.+++++.++||.+..+
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~ 180 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTD 180 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecC
Confidence 224699999999999999888777889999999887654
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=142.69 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=150.4
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||++ .||.+++++|+++|+.|++..|+. ......+.+.... + ....+.+|++|.++++++++..
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~---g-~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEI---G-CNFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhc---C-CceEEEccCCCHHHHHHHHHHHHH
Confidence 37899999997 899999999999999999887763 2222233332211 1 2235789999999998877532
Q ss_pred ---CCcEEEEccccccC--------CccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV--------GESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++||+||.... ....+.+...+++|+.++..+++++... .-++||++||....
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~----------- 151 (260)
T PRK06603 83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAE----------- 151 (260)
T ss_pred HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccc-----------
Confidence 59999999996431 1123345668899999999988875432 12589999996543
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.||.+.+.+.+.++.+. .++++.++.||.+-.+... ... ........... . .+
T Consensus 152 ~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~-------~~~-~~~~~~~~~~~-~---~p--- 216 (260)
T PRK06603 152 KVIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASS-------AIG-DFSTMLKSHAA-T---AP--- 216 (260)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhh-------cCC-CcHHHHHHHHh-c---CC---
Confidence 122334689999999999999988875 3689999999887654100 000 01111111111 1 01
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++.+++... .....++.+.+.++.
T Consensus 217 ----------~~r~~~pedva~~~~~L~s~~-~~~itG~~i~vdgG~ 252 (260)
T PRK06603 217 ----------LKRNTTQEDVGGAAVYLFSEL-SKGVTGEIHYVDCGY 252 (260)
T ss_pred ----------cCCCCCHHHHHHHHHHHhCcc-cccCcceEEEeCCcc
Confidence 112467899999999998752 223567888886663
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=139.60 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=141.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
|+++||||+|+||++++++|+++ ++|++++|+.. .+.+|++|.++++++++.. ++|+
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~---------------------~~~~D~~~~~~~~~~~~~~~~id~ 58 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG---------------------DVQVDITDPASIRALFEKVGKVDA 58 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC---------------------ceEecCCChHHHHHHHHhcCCCCE
Confidence 58999999999999999999999 99999987632 3568999999999988764 6999
Q ss_pred EEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhh
Q 040584 82 VIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGR 155 (347)
Q Consensus 82 vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~ 155 (347)
|||+||...... ..+++...+++|+.++.++++++... +..+|+++||.... .+......|+.
T Consensus 59 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~-----------~~~~~~~~Y~~ 127 (199)
T PRK07578 59 VVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD-----------EPIPGGASAAT 127 (199)
T ss_pred EEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC-----------CCCCCchHHHH
Confidence 999999654322 23345567889999999999887653 23589999987643 23344568999
Q ss_pred hHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceee
Q 040584 156 SKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 234 (347)
+|.+.+.+++.++.++ .++.+..+.||.+-.+ +. . .+. .++ + .
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~---------------~~----~--~~~--~~~----------~---~ 171 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTES---------------LE----K--YGP--FFP----------G---F 171 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCc---------------hh----h--hhh--cCC----------C---C
Confidence 9999999999887764 4788999998765332 00 0 000 000 1 1
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
.++..+|+|+++..++.. ...+++|+++
T Consensus 172 ~~~~~~~~a~~~~~~~~~----~~~g~~~~~~ 199 (199)
T PRK07578 172 EPVPAARVALAYVRSVEG----AQTGEVYKVG 199 (199)
T ss_pred CCCCHHHHHHHHHHHhcc----ceeeEEeccC
Confidence 257899999999988875 3566888763
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=142.84 Aligned_cols=226 Identities=16% Similarity=0.088 Sum_probs=150.3
Q ss_pred CceEEEEcC--CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGG--VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGa--tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++|||| ++.||.+++++|+++|++|+++.|.....+ ..+.+.... + ....+.+|++|.+++.++++..
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~-~~~~~~~~~---~-~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKD-RITEFAAEF---G-SDLVFPCDVASDEQIDALFASLGQ 80 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHH-HHHHHHHhc---C-CcceeeccCCCHHHHHHHHHHHHH
Confidence 478999996 679999999999999999998765422222 222222211 1 2346789999999999887542
Q ss_pred ---CCcEEEEccccccCC---------ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVG---------ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~---------~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|++|||||..... ...+++...+++|+.++..+.+++... +-++||++||....
T Consensus 81 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~---------- 150 (260)
T PRK06997 81 HWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE---------- 150 (260)
T ss_pred HhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc----------
Confidence 699999999975321 122345567899999999888876643 23589999987542
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
.+......|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+-.. ... ........+.. . .+
T Consensus 151 -~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~-------~~~-~~~~~~~~~~~-~---~p-- 215 (260)
T PRK06997 151 -RVVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAAS-------GIK-DFGKILDFVES-N---AP-- 215 (260)
T ss_pred -cCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhc-------ccc-chhhHHHHHHh-c---Cc--
Confidence 122335679999999999999988875 3689999999877543100 000 00011111111 1 01
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++.+++... .....++++.+.++.
T Consensus 216 -----------~~r~~~pedva~~~~~l~s~~-~~~itG~~i~vdgg~ 251 (260)
T PRK06997 216 -----------LRRNVTIEEVGNVAAFLLSDL-ASGVTGEITHVDSGF 251 (260)
T ss_pred -----------ccccCCHHHHHHHHHHHhCcc-ccCcceeEEEEcCCh
Confidence 112467899999999998752 234677888886664
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-17 Score=141.82 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=149.5
Q ss_pred ceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++||||++ .||+++++.|+++|+.|++.+|+. ......+.+... .+...++.+|++|.++++++++..
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQ----LGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhc----cCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 7899999985 899999999999999999888763 222223333221 134567889999999999877532
Q ss_pred --CCcEEEEccccccCCc---------cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE---------SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~---------~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||...... +.+.+...+++|+.++..+.+++... +-++||++||....
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~----------- 150 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----------- 150 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC-----------
Confidence 5899999999643211 12234457788999988887776432 22589999987542
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.||.+.+.+++.++.+. .++++.++-||.+--+.. .... ........... . .+
T Consensus 151 ~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~-------~~~~-~~~~~~~~~~~-~---~p--- 215 (262)
T PRK07984 151 RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAA-------SGIK-DFRKMLAHCEA-V---TP--- 215 (262)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHH-------hcCC-chHHHHHHHHH-c---CC---
Confidence 122334689999999999999998875 378999999987754310 0000 01111111111 1 00
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+++++.+++.... ....++.+.+.++.
T Consensus 216 ----------~~r~~~pedva~~~~~L~s~~~-~~itG~~i~vdgg~ 251 (262)
T PRK07984 216 ----------IRRTVTIEDVGNSAAFLCSDLS-AGISGEVVHVDGGF 251 (262)
T ss_pred ----------CcCCCCHHHHHHHHHHHcCccc-ccccCcEEEECCCc
Confidence 1125678999999999887522 23567788776664
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=140.67 Aligned_cols=224 Identities=23% Similarity=0.257 Sum_probs=165.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+||||||++|++++++|+++|++|+++.|++.+..... .+++...+|+.+...+..+++ ++|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-----------~~v~~~~~d~~~~~~l~~a~~--G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-----------GGVEVVLGDLRDPKSLVAGAK--GVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-----------CCcEEEEeccCCHhHHHHHhc--cccEE
Confidence 68999999999999999999999999999999877654322 378899999999999999999 69999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
+++.+... ... ...........+..+++. .++++++++|....- ......|..+|..+|.
T Consensus 68 ~~i~~~~~-~~~-----~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~-------------~~~~~~~~~~~~~~e~ 127 (275)
T COG0702 68 LLISGLLD-GSD-----AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD-------------AASPSALARAKAAVEA 127 (275)
T ss_pred EEEecccc-ccc-----chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC-------------CCCccHHHHHHHHHHH
Confidence 99987542 111 122233444444444444 346789988887652 1334689999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
.+.+ .+++.+++|+..+|... ...++........+... -+.....++.++|+
T Consensus 128 ~l~~-----sg~~~t~lr~~~~~~~~--------------~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~d~ 179 (275)
T COG0702 128 ALRS-----SGIPYTTLRRAAFYLGA--------------GAAFIEAAEAAGLPVIP---------RGIGRLSPIAVDDV 179 (275)
T ss_pred HHHh-----cCCCeEEEecCeeeecc--------------chhHHHHHHhhCCceec---------CCCCceeeeEHHHH
Confidence 9986 38899999976666431 11112222232222222 12237889999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 290 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~ 290 (347)
++++..++.. +...+++|.+++.+..+..++++.+.+..|++...
T Consensus 180 a~~~~~~l~~---~~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 180 AEALAAALDA---PATAGRTYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred HHHHHHHhcC---CcccCcEEEccCCceecHHHHHHHHHHHhCCccee
Confidence 9999988876 33667999999999999999999999999988765
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=149.98 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=127.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHH---Hcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVV---FAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~---~~~ 76 (347)
++.++||||+|+||++++++|+++|++|++++|+.++.+...+++....+ ..++..+.+|+++ .+.+.++ +..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYS--KTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC--CcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999987766655555543211 2356778899985 3333333 333
Q ss_pred CCCcEEEEccccccCC--c----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 77 TKFDAVIHFAGLKAVG--E----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~--~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
..+|++|||||..... . ..+.....+++|+.++..+.+++. +.+.++||++||...+..+ +
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~---------~ 201 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP---------S 201 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC---------C
Confidence 3467999999975321 1 223345688999999998877754 3456799999998764210 1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
......|+.||.+.+.+.+.++.+. .|++++++.||.+-.+
T Consensus 202 ~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~ 244 (320)
T PLN02780 202 DPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATK 244 (320)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecC
Confidence 1235789999999999999888775 3799999999887653
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=141.98 Aligned_cols=169 Identities=20% Similarity=0.215 Sum_probs=124.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---K 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~ 78 (347)
|++++||||+|+||++++++|+++|++|++++|++...+.. ... .++.++.+|++|.+++.++++.. +
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~----~~~-----~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL----QAL-----PGVHIEKLDMNDPASLDQLLQRLQGQR 71 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH----Hhc-----cccceEEcCCCCHHHHHHHHHHhhcCC
Confidence 47899999999999999999999999999999987654322 111 25667889999999888877642 6
Q ss_pred CcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 79 ~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
+|+|||+||..... ...++....+++|+.++..+++++... +..+++++||.. |.... .+...
T Consensus 72 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~------~~~~~ 143 (225)
T PRK08177 72 FDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL------PDGGE 143 (225)
T ss_pred CCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc------CCCCC
Confidence 99999999975321 122344567788999999988877543 235788888753 22110 12224
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
...|+.+|.+.+.+++.+++++ .++.+.+++||.+-.+
T Consensus 144 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 144 MPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 4579999999999999988774 3688999999876543
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-17 Score=142.17 Aligned_cols=171 Identities=11% Similarity=0.058 Sum_probs=127.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++|+||||+|+||+++++.|+++|++|+++.|++...+...+.+.. ..++.++.+|++|.+++.+++++.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999976554433232221 135788999999999888776532
Q ss_pred -CCcEEEEccccccCCc--cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 78 -KFDAVIHFAGLKAVGE--SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
++|.+||+++...... ..+.....++.|+.+...+++.+... ..+++|++||..... .+..+...
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------~~~~~~~~ 149 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY----------KASPDQLS 149 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc----------cCCCCchH
Confidence 4799999998543211 11334556788999988887776543 235899999875421 12234567
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
|+.+|.+.+.+++.++.+. .+++++++||++++++
T Consensus 150 Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~ 186 (238)
T PRK05786 150 YAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGD 186 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCC
Confidence 9999999999888887664 4899999999999986
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-17 Score=160.58 Aligned_cols=171 Identities=22% Similarity=0.214 Sum_probs=133.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA----GAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999866655544444332 346788999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|+||||||...... ..+.....+++|+.++.++++++. +.+ -++||++||...|. +.
T Consensus 391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~ 459 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA-----------PS 459 (582)
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc-----------CC
Confidence 5899999999754332 233455678899999999887644 333 35899999998874 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.....|+.||.+.+.+++.++.+. .+++++++.||.+-.+
T Consensus 460 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 460 RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 456789999999999998887664 3799999999987554
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=164.54 Aligned_cols=171 Identities=18% Similarity=0.162 Sum_probs=133.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||+++++.|+++|++|++++|+........+.+... +.++.++.+|++|.+++++++++.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK----GGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999866554444443322 346888999999999998887642
Q ss_pred -CCcEEEEccccccCCc---c---ccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---S---VQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~---~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||...... . .+.+...+++|+.++.++++++ ++.+.++||++||...++ +
T Consensus 447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~ 515 (657)
T PRK07201 447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQT-----------N 515 (657)
T ss_pred CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC-----------C
Confidence 5999999999643211 1 1345678899999988886664 445567999999998874 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
......|+.+|.+.+.+++.++.+. .++.+++++||.+..+
T Consensus 516 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~ 558 (657)
T PRK07201 516 APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTP 558 (657)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCccc
Confidence 2345679999999999999887764 4799999999998765
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-17 Score=155.72 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=129.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||++.||.+++++|+++|++|++++|+........+.+ +.++.++.+|++|++++.++++..
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-------GPDHHALAMDVSDEAQIREGFEQLHREF 77 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999988765544333222 235678899999999998887642
Q ss_pred -CCcEEEEccccccC------CccccCcchhhhhhhhHHHHHHHHHHHc----CCC-eEEEeccccccCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV------GESVQKPLPYFDNNLTGTITLLEVMAAH----GCK-NLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -~~d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~-~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||.... ....+.+...+++|+.++..+++++... +.+ +||++||.....
T Consensus 78 g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~----------- 146 (520)
T PRK06484 78 GRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV----------- 146 (520)
T ss_pred CCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC-----------
Confidence 59999999996321 1223445678999999999988876643 333 899999976542
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
+......|+.+|.+.+.+++.++.++ .+++++++.||.+-.+
T Consensus 147 ~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~ 190 (520)
T PRK06484 147 ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQ 190 (520)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCch
Confidence 22345689999999999999888774 3789999999887654
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-17 Score=140.68 Aligned_cols=171 Identities=19% Similarity=0.135 Sum_probs=126.2
Q ss_pred eEEEEcCCCcccHHHHHHHHh----CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 4 NILVIGGVGYIGSHTVLQLLL----GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~----~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
.++||||++.||.+++++|++ .|+.|+++.|+....+...+.+.... .+.++.++.+|++|.+++.++++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~~~~~v~~~~~~~~~ 79 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER--SGLRVVRVSLDLGAEAGLEQLLKALRE 79 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC--CCceEEEEEeccCCHHHHHHHHHHHHh
Confidence 589999999999999999997 79999999998766555544443311 1336788999999999888776531
Q ss_pred -------CCcEEEEccccccCC--c-----cccCcchhhhhhhhHHHHHHHHHHHc-----C-CCeEEEeccccccCCCC
Q 040584 78 -------KFDAVIHFAGLKAVG--E-----SVQKPLPYFDNNLTGTITLLEVMAAH-----G-CKNLVFSSSATAYGWPK 137 (347)
Q Consensus 78 -------~~d~vih~a~~~~~~--~-----~~~~~~~~~~~nv~~~~~l~~~~~~~-----~-~~~iv~~SS~~~yg~~~ 137 (347)
+.|+||||||..... . ..+.....+++|+.++..+.+++... + .++||++||...+.
T Consensus 80 ~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~--- 156 (256)
T TIGR01500 80 LPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ--- 156 (256)
T ss_pred ccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC---
Confidence 236999999964321 1 12334568999999988877665432 2 25899999986642
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 138 VVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 138 ~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
+......|+.+|.+.+.+++.++.+. .++.++++.||.+-.+
T Consensus 157 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 157 --------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccch
Confidence 33345689999999999999888775 4789999999887543
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=137.74 Aligned_cols=224 Identities=16% Similarity=0.106 Sum_probs=147.2
Q ss_pred ceEEEEcC--CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 3 KNILVIGG--VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 3 ~~vlItGa--tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
|+++|||| ++.||.+++++|+++|+.|++++|+... ...+.+.... ...+.++.+|++|.+++.++++.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~--~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL--RLTERIAKRL---PEPAPVLELDVTNEEHLASLADRVREH 82 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch--hHHHHHHHhc---CCCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence 68999999 8999999999999999999998875421 1112222111 22567889999999998887653
Q ss_pred -CCCcEEEEccccccCC----c----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVG----E----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~----~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
.++|++|||||..... . ..+.....+++|+.++..+++++... .-+++|++|+....
T Consensus 83 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------------ 150 (256)
T PRK07889 83 VDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------------ 150 (256)
T ss_pred cCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc------------
Confidence 1699999999975321 1 12233457899999999888776542 22489988764321
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+......|+.||.+.+.+.+.++.+. .+++++++.||.+-.+-.. .... .......+.. . .+
T Consensus 151 ~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~-------~~~~-~~~~~~~~~~-~---~p---- 214 (256)
T PRK07889 151 AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAK-------AIPG-FELLEEGWDE-R---AP---- 214 (256)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhh-------cccC-cHHHHHHHHh-c---Cc----
Confidence 22334679999999999999888775 4789999999887654100 0000 0011111111 0 00
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
-+ +.+...+|+|+++.+++.... ....++++.+.++
T Consensus 215 -----~~---~~~~~p~evA~~v~~l~s~~~-~~~tG~~i~vdgg 250 (256)
T PRK07889 215 -----LG---WDVKDPTPVARAVVALLSDWF-PATTGEIVHVDGG 250 (256)
T ss_pred -----cc---cccCCHHHHHHHHHHHhCccc-ccccceEEEEcCc
Confidence 00 125678999999999887522 2356778877655
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=148.72 Aligned_cols=221 Identities=18% Similarity=0.069 Sum_probs=148.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||..+++.|.++|++|++++|+.... . ...+... -+...+.+|++|.+++.++++..
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~-~-l~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 282 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGE-A-LAAVANR-----VGGTALALDITAPDAPARIAEHLAERH 282 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHH-H-HHHHHHH-----cCCeEEEEeCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999998753321 1 1111111 13457889999999888877632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC----CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG----CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~----~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+|||+||...... ..+.+...+++|+.++.++.+++.... .++||++||...+. +..
T Consensus 283 g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~-----------g~~ 351 (450)
T PRK08261 283 GGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIA-----------GNR 351 (450)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC-----------CCC
Confidence 5899999999754322 233456688899999999999887632 26899999976542 222
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|...+.+++.++.+. .++.+.++.||.+-.+- ...+......... ....+
T Consensus 352 ~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~-----------~~~~~~~~~~~~~-~~~~l-------- 411 (450)
T PRK08261 352 GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQM-----------TAAIPFATREAGR-RMNSL-------- 411 (450)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchh-----------hhccchhHHHHHh-hcCCc--------
Confidence 34689999999998888877653 47899999998764321 0001001111111 00011
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....-.+|+++++.+++... .....++++.++++
T Consensus 412 -------~~~~~p~dva~~~~~l~s~~-~~~itG~~i~v~g~ 445 (450)
T PRK08261 412 -------QQGGLPVDVAETIAWLASPA-SGGVTGNVVRVCGQ 445 (450)
T ss_pred -------CCCCCHHHHHHHHHHHhChh-hcCCCCCEEEECCC
Confidence 11224679999999888642 22456788888654
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=130.24 Aligned_cols=168 Identities=20% Similarity=0.219 Sum_probs=123.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++++||||+|+||.++++.|+++|+ .|+++.|+..........+..+.. .+.++.++.+|+.+.+++.++++..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEA-LGAEVTVVACDVADRAALAAALAAIPARL 79 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999996 577777766543322211121111 1346778899999998888776532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
.+|.|||+||...... ..+.+...+++|+.++.++++++++.+.+++|++||...+- +......
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~-----------~~~~~~~ 148 (180)
T smart00822 80 GPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL-----------GNPGQAN 148 (180)
T ss_pred CCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc-----------CCCCchh
Confidence 4799999999643221 22445667899999999999999887778999999975531 2234567
Q ss_pred hhhhHHHHHHHHHHHhhhcCCceEEEeecccc
Q 040584 153 YGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v 184 (347)
|+.+|...+.+++.+... +++++.+.||.+
T Consensus 149 y~~sk~~~~~~~~~~~~~--~~~~~~~~~g~~ 178 (180)
T smart00822 149 YAAANAFLDALAAHRRAR--GLPATSINWGAW 178 (180)
T ss_pred hHHHHHHHHHHHHHHHhc--CCceEEEeeccc
Confidence 999999999999766543 888888887654
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=132.99 Aligned_cols=278 Identities=16% Similarity=0.072 Sum_probs=174.8
Q ss_pred CCceEEEEcCCCcccHHHHH-----HHHhCC----CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH
Q 040584 1 MAKNILVIGGVGYIGSHTVL-----QLLLGG----YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE 71 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~-----~L~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (347)
|+++.++-+.+|+|+.+|.. .+-+.+ |+|++++|++.+... .+...|..-.
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ri----------------tw~el~~~Gi---- 70 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARI----------------TWPELDFPGI---- 70 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCccc----------------ccchhcCCCC----
Confidence 45677888999999988887 444445 999999999876533 2222221110
Q ss_pred HHHccCCCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCC
Q 040584 72 VVFAGTKFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 72 ~~~~~~~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
.. .|+.+++++|..... .+++.-.+.....++.+..++++..+.. .+.+|.+|.+++|-+.+...|+|+.
T Consensus 71 --p~--sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~ 146 (315)
T KOG3019|consen 71 --PI--SCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKI 146 (315)
T ss_pred --ce--ehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccc
Confidence 00 244444444422111 1222222333444566777888877653 3479999999999988888899998
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
+.+...... +...|........ ....+.+++|.|.|.|.+. +....++..++.-+ ..
T Consensus 147 ~~qgfd~~s--rL~l~WE~aA~~~-~~~~r~~~iR~GvVlG~gG--------Ga~~~M~lpF~~g~------------GG 203 (315)
T KOG3019|consen 147 VHQGFDILS--RLCLEWEGAALKA-NKDVRVALIRIGVVLGKGG--------GALAMMILPFQMGA------------GG 203 (315)
T ss_pred ccCChHHHH--HHHHHHHHHhhcc-CcceeEEEEEEeEEEecCC--------cchhhhhhhhhhcc------------CC
Confidence 877665443 3233322211111 1357899999999999741 22222332233222 23
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCC----C-CCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG----R-RPGDA 300 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----~-~~~~~ 300 (347)
|+++|.|++.|||++|++..+..++++ ....+++|-+.+++.+..|+.+.+.++++.+.-+.... . .-.+.
T Consensus 204 PlGsG~Q~fpWIHv~DL~~li~~ale~----~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~er 279 (315)
T KOG3019|consen 204 PLGSGQQWFPWIHVDDLVNLIYEALEN----PSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPER 279 (315)
T ss_pred cCCCCCeeeeeeehHHHHHHHHHHHhc----CCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccc
Confidence 456999999999999999999999998 35668999999999999999999999999764221110 0 00011
Q ss_pred hhhccC-----hHHHHHhcCCcccc-cHHHHHHHHH
Q 040584 301 EIVYAS-----TEKAERELNWKAKY-GIDEMCRDQW 330 (347)
Q Consensus 301 ~~~~~d-----~~k~~~~lg~~p~~-~~~~~i~~~~ 330 (347)
....+. ..|+ ..+||+.+| .+++++++.+
T Consensus 280 A~~vLeGqKV~Pqra-l~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 280 ATVVLEGQKVLPQRA-LELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred eeEEeeCCcccchhH-hhcCceeechHHHHHHHHHh
Confidence 112222 3344 357999988 7788887654
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=129.58 Aligned_cols=153 Identities=21% Similarity=0.299 Sum_probs=120.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCC--CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNL--DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+++||||++.||..++++|+++| +.|+++.|+ .+........++. .+.++.++.+|+++.++++++++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA----PGAKITFIECDLSDPESIRALIEEVIK 76 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH----TTSEEEEEESETTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc----ccccccccccccccccccccccccccc
Confidence 689999999999999999999995 577788887 2333333333332 2468899999999999998887643
Q ss_pred ---CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
.+|+||||||....... .+.....+++|+.+...+.+++...+-++||++||.... .+....
T Consensus 77 ~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~-----------~~~~~~ 145 (167)
T PF00106_consen 77 RFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV-----------RGSPGM 145 (167)
T ss_dssp HHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT-----------SSSTTB
T ss_pred ccccccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc-----------cCCCCC
Confidence 69999999997664332 234457899999999999998887556799999998765 244556
Q ss_pred CchhhhHHHHHHHHHHHhhh
Q 040584 151 NPYGRSKLFIEEICRDVHRS 170 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~ 170 (347)
..|+.+|.+.+.+++.++++
T Consensus 146 ~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 146 SAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 78999999999999998775
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-16 Score=135.25 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=123.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||++.||.+++++|+ +|+.|++++|+.++.+...+.+... ....+..+.+|++|.++++++++..
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQR---GATSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc---cCCceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999 5999999999876665555554432 1234778899999999988776532
Q ss_pred CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHH----HHHcC-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEV----MAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~----~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||....... .+...+.+.+|+.+...++.. +++.+ -++||++||...+ .+..
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-----------~~~~ 145 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW-----------RARR 145 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc-----------cCCc
Confidence 69999999997533221 112234566787777655443 44432 3589999997653 1223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.+|.+.+.+.+.++.+. .++.++++.||.+..+
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~ 186 (246)
T PRK05599 146 ANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS 186 (246)
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence 45689999999999999888774 4688888888876653
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=131.44 Aligned_cols=210 Identities=16% Similarity=0.127 Sum_probs=139.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~ 79 (347)
|+|+||||+|+||++++++|+++| +.|....|..... . ...++.++.+|++|.++++++.+.. ++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~------~~~~~~~~~~Dls~~~~~~~~~~~~~~i 68 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F------QHDNVQWHALDVTDEAEIKQLSEQFTQL 68 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c------ccCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999985 5665555543221 0 1346788999999999888766543 69
Q ss_pred cEEEEccccccCCc----------cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 80 DAVIHFAGLKAVGE----------SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 80 d~vih~a~~~~~~~----------~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
|+||||||...... ..+.....+++|+.++..+++.+.. .+.++++++||... .... .
T Consensus 69 d~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~--~~~~------~ 140 (235)
T PRK09009 69 DWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVG--SISD------N 140 (235)
T ss_pred CEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccc--cccc------C
Confidence 99999999753210 1122345788899998888776553 23468999987432 1100 1
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+..+...|+.+|.+.+.+++.++.+. .++.+.++.||.+..+-. . .... . .+
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~-----------~-------~~~~-~---~~-- 196 (235)
T PRK09009 141 RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALS-----------K-------PFQQ-N---VP-- 196 (235)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCC-----------c-------chhh-c---cc--
Confidence 22345689999999999999888663 368888888888765410 0 0000 0 00
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
...++..+|+++++..++..... ...+..+.+.++
T Consensus 197 -----------~~~~~~~~~~a~~~~~l~~~~~~-~~~g~~~~~~g~ 231 (235)
T PRK09009 197 -----------KGKLFTPEYVAQCLLGIIANATP-AQSGSFLAYDGE 231 (235)
T ss_pred -----------cCCCCCHHHHHHHHHHHHHcCCh-hhCCcEEeeCCc
Confidence 11246789999999999987321 235566655433
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=140.12 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=108.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+... .... ....+..+.+|++|.+++.+.+. ++|+
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~---~~~~----~~~~v~~v~~Dvsd~~~v~~~l~--~IDi 248 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITL---EING----EDLPVKTLHWQVGQEAALAELLE--KVDI 248 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHhh----cCCCeEEEEeeCCCHHHHHHHhC--CCCE
Confidence 4789999999999999999999999999999886543321 1111 12245678899999999999887 6999
Q ss_pred EEEccccccCC-ccccCcchhhhhhhhHHHHHHHHHHH----cCC---C-eEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 82 VIHFAGLKAVG-ESVQKPLPYFDNNLTGTITLLEVMAA----HGC---K-NLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 82 vih~a~~~~~~-~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~---~-~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
+|||||..... .+.+++...+++|+.++.++++++.. .+. + .+|++|++.. .+ .....
T Consensus 249 LInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~------------~~-~~~~~ 315 (406)
T PRK07424 249 LIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV------------NP-AFSPL 315 (406)
T ss_pred EEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc------------cC-CCchH
Confidence 99999965322 23345567899999999999888653 221 2 3555554321 11 12346
Q ss_pred hhhhHHHHHHHHHHHhhhcCCceEEEeec
Q 040584 153 YGRSKLFIEEICRDVHRSDSEWKIILLRY 181 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~ 181 (347)
|+.||.+.+.+.. ..+...+..+..+.|
T Consensus 316 Y~ASKaAl~~l~~-l~~~~~~~~I~~i~~ 343 (406)
T PRK07424 316 YELSKRALGDLVT-LRRLDAPCVVRKLIL 343 (406)
T ss_pred HHHHHHHHHHHHH-HHHhCCCCceEEEEe
Confidence 9999999988763 333323444444443
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=136.90 Aligned_cols=171 Identities=14% Similarity=0.062 Sum_probs=121.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc----------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN----------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
|+++||||++.||.+++++|++.|+.|++++|+.. ......+.+.. .+.++.++.+|++|.+++++
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTA----AGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHh----cCCceEEEEcCCCCHHHHHH
Confidence 79999999999999999999999999999988742 22222222222 13457788999999999988
Q ss_pred HHccC-----CCcEEEEcc-ccccC----Cc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccc-c
Q 040584 73 VFAGT-----KFDAVIHFA-GLKAV----GE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATA-Y 133 (347)
Q Consensus 73 ~~~~~-----~~d~vih~a-~~~~~----~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~-y 133 (347)
++++. ++|++|||| |.... .. ..+.+...+++|+.++..+++++.. .+-++||++||... +
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~ 164 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence 87642 699999999 64210 11 1223445778899988887766543 23358999999543 2
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccC
Q 040584 134 GWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVG 186 (347)
Q Consensus 134 g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G 186 (347)
+. .+......|+.+|.+...+.+.++.++ .++++.++.||.+-.
T Consensus 165 ~~---------~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T 210 (305)
T PRK08303 165 NA---------THYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRS 210 (305)
T ss_pred cC---------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCcccc
Confidence 11 011234579999999999999888875 368899999887643
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=122.05 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=151.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|.+.++||||+..||+++++.|.++|++|.+.++.....++....+... ..-..+.+|+++..+++..+++.
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~-----~~h~aF~~DVS~a~~v~~~l~e~~k~ 87 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY-----GDHSAFSCDVSKAHDVQNTLEEMEKS 87 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC-----CccceeeeccCcHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999988776655544443321 24456899999998887766542
Q ss_pred --CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHHc----CC--CeEEEeccccc-cCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAAH----GC--KNLVFSSSATA-YGWPKVVPCTEE 144 (347)
Q Consensus 78 --~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~--~~iv~~SS~~~-yg~~~~~~~~e~ 144 (347)
.++++++|||+.... -..+++...+.+|+.|++.+.+++.+. +. .+||++||.-- .|.
T Consensus 88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN--------- 158 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN--------- 158 (256)
T ss_pred cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc---------
Confidence 699999999987643 245678889999999999988875543 22 28999999632 121
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEe
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVF 221 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 221 (347)
-...-|+.+|...--+.+..+++. .++++.++-||.+--| ....+.+ .+.++...- ++
T Consensus 159 ---~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tp-----------MT~~mp~~v~~ki~~~i--Pm--- 219 (256)
T KOG1200|consen 159 ---FGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATP-----------MTEAMPPKVLDKILGMI--PM--- 219 (256)
T ss_pred ---ccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccCh-----------hhhhcCHHHHHHHHccC--Cc---
Confidence 122446666654433333333332 3889999888887665 2223333 344444321 11
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
..+-..+|+|+.+++++.. ......+..+.+.+|
T Consensus 220 ------------gr~G~~EevA~~V~fLAS~-~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 220 ------------GRLGEAEEVANLVLFLASD-ASSYITGTTLEVTGG 253 (256)
T ss_pred ------------cccCCHHHHHHHHHHHhcc-ccccccceeEEEecc
Confidence 1244689999999988854 334467788888765
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=139.37 Aligned_cols=176 Identities=16% Similarity=0.082 Sum_probs=124.2
Q ss_pred EEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----CC
Q 040584 6 LVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-----KF 79 (347)
Q Consensus 6 lItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 79 (347)
+||||++.||.+++++|+++| +.|+++.|+........+.+.. ...++.++.+|++|.+++.++++.. ++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i 76 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM----PKDSYTVMHLDLASLDSVRQFVDNFRRSGRPL 76 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcC----CCCeEEEEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 599999999999999999999 9999998876554433333321 1346778899999999988776532 58
Q ss_pred cEEEEccccccCC-----ccccCcchhhhhhhhHHHHHHHHHH----HcC--CCeEEEeccccccCCCC-C--CC-----
Q 040584 80 DAVIHFAGLKAVG-----ESVQKPLPYFDNNLTGTITLLEVMA----AHG--CKNLVFSSSATAYGWPK-V--VP----- 140 (347)
Q Consensus 80 d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~--~~~iv~~SS~~~yg~~~-~--~~----- 140 (347)
|+||||||..... .+.+.+...+++|+.++..+++.+. +.+ .++||++||...+-... . .+
T Consensus 77 D~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~ 156 (308)
T PLN00015 77 DVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 156 (308)
T ss_pred CEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchh
Confidence 9999999974321 1234456789999999888866533 333 36999999976541100 0 00
Q ss_pred -----------------CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccC
Q 040584 141 -----------------CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVG 186 (347)
Q Consensus 141 -----------------~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G 186 (347)
+++ .+..+...|+.||.+...+.+.+++++ .++.++++.||.|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 157 DLRGLAGGLNGLNSSAMIDG-GEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred hhhhhhcccCCccchhhccc-cCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 000 122345679999999888777777764 379999999999854
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=134.34 Aligned_cols=182 Identities=20% Similarity=0.141 Sum_probs=140.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++|||||..||.++++.|+.+|.+|+...|+..+.+...+.+.. +.....+.++.+|+++..++.++.+.+
T Consensus 36 ~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~--~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~ 113 (314)
T KOG1208|consen 36 KVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQK--GKANQKIRVIQLDLSSLKSVRKFAEEFKKKEG 113 (314)
T ss_pred cEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh--cCCCCceEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999998777766666655 334567788999999999999877543
Q ss_pred CCcEEEEccccccCCc--cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCC--CCCCCCCCCCC-CC
Q 040584 78 KFDAVIHFAGLKAVGE--SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGW--PKVVPCTEEFP-LQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~--~~~~~~~e~~~-~~ 148 (347)
..|++|+|||+..+.. +.+..+..+.+|..|...+.+. ++.....|||++||... +. .......|... ..
T Consensus 114 ~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~~~~~~ 192 (314)
T KOG1208|consen 114 PLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEKAKLYS 192 (314)
T ss_pred CccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchhccCcc
Confidence 6999999999766543 3456788999999998877665 44443369999999764 21 11111122221 33
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcC-CceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDS-EWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~lR~~~v~G~ 187 (347)
....|+.||.+...+..++++... ++.+..+.||.+...
T Consensus 193 ~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~ 232 (314)
T KOG1208|consen 193 SDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTT 232 (314)
T ss_pred chhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCccccc
Confidence 334699999999999999988874 799999999988764
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=128.09 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=122.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (347)
++++||||++.||++++++|+++|++|+++.|+..+.+...+.+... +.++..+.+|+.|.+++.++++. -
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL----TDNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----CCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999998876655555444432 34567788999999999877653 1
Q ss_pred -CCcEEEEccccccCC-ccc----cCcchhhhhhhhHHHHHHHH----HHHcC-CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG-ESV----QKPLPYFDNNLTGTITLLEV----MAAHG-CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~-~~~----~~~~~~~~~nv~~~~~l~~~----~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|++|||||..... ... +.....+++|+.++..+++. +++.+ -++||++||...+
T Consensus 82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------------- 148 (227)
T PRK08862 82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------------- 148 (227)
T ss_pred CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------------
Confidence 599999999843221 211 22334566787777766554 33333 3589999986432
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVG 186 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G 186 (347)
.....|+.+|.+.+.+.+.++.+. .++++..+.||.+-.
T Consensus 149 -~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t 189 (227)
T PRK08862 149 -QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSA 189 (227)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcC
Confidence 124579999999999999888764 479999999987654
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-15 Score=128.13 Aligned_cols=236 Identities=17% Similarity=0.139 Sum_probs=160.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|.++|||++..||++++++|++.|.+|++.+|+.+..+.....+..... ...++..+.+|+++.++.+++++.
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY-TGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999988776655555443322 245688899999988877766532
Q ss_pred -CCCcEEEEccccccCC-----ccccCcchhhhhhhhH-HHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVG-----ESVQKPLPYFDNNLTG-TITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~-~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
-++|++|+|||..... .+.+.++..+++|+.| +..+..++.. .+-..++++||+..+.
T Consensus 87 ~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~----------- 155 (270)
T KOG0725|consen 87 FGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVG----------- 155 (270)
T ss_pred CCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEecccccc-----------
Confidence 1699999999976533 2455667789999995 5555555443 3455788888876542
Q ss_pred CCCCC-CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 146 PLQAM-NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 146 ~~~~~-~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+..+. ..|+.+|.+.+.+.+..+.+. .++++.++-||.+..+.. ...........+..... .....+
T Consensus 156 ~~~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~------~~~~~~~~~~~~~~~~~-~~~~~p--- 225 (270)
T KOG0725|consen 156 PGPGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLR------AAGLDDGEMEEFKEATD-SKGAVP--- 225 (270)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCcc------ccccccchhhHHhhhhc-cccccc---
Confidence 11122 689999999999999888875 479999999998887630 00000001111111100 001111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.-.+...+|+++++.+++..... ...++.+.+.++..
T Consensus 226 ----------~gr~g~~~eva~~~~fla~~~as-yitG~~i~vdgG~~ 262 (270)
T KOG0725|consen 226 ----------LGRVGTPEEVAEAAAFLASDDAS-YITGQTIIVDGGFT 262 (270)
T ss_pred ----------cCCccCHHHHHHhHHhhcCcccc-cccCCEEEEeCCEE
Confidence 12356789999999988876433 56677787766643
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=130.97 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=107.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++||||+|+||++++++|+++|++|++++|+..... +.. . ......+.+|++|.+++.+.+. ++|+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~---~~~---~---~~~~~~~~~D~~~~~~~~~~~~--~iDi 82 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS---ESN---D---ESPNEWIKWECGKEESLDKQLA--SLDV 82 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh---hhh---c---cCCCeEEEeeCCCHHHHHHhcC--CCCE
Confidence 478999999999999999999999999999988752211 110 0 1122567899999999988886 6999
Q ss_pred EEEccccccCCc-cccCcchhhhhhhhHHHHHHHHHHHc-------CCCeEEEeccccccCCCCCCCCCCCCCCCCCCch
Q 040584 82 VIHFAGLKAVGE-SVQKPLPYFDNNLTGTITLLEVMAAH-------GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPY 153 (347)
Q Consensus 82 vih~a~~~~~~~-~~~~~~~~~~~nv~~~~~l~~~~~~~-------~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y 153 (347)
+|||||...... +.+++...+++|+.++.++++++... +-+.++..||...+. + .....|
T Consensus 83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~-----------~-~~~~~Y 150 (245)
T PRK12367 83 LILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ-----------P-ALSPSY 150 (245)
T ss_pred EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC-----------C-CCCchh
Confidence 999999743322 34566788999999999998876542 112344445543221 1 123569
Q ss_pred hhhHHHHHHHHHHHhh----h--cCCceEEEeeccc
Q 040584 154 GRSKLFIEEICRDVHR----S--DSEWKIILLRYFN 183 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~----~--~~~~~~~~lR~~~ 183 (347)
+.||.+.+.+. .+.+ + ..++.+.++.||.
T Consensus 151 ~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~ 185 (245)
T PRK12367 151 EISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGP 185 (245)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCC
Confidence 99999976543 3322 1 1366677766654
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=133.67 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=145.6
Q ss_pred CceEEEEcC--CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHH--------hh-ccCCCCeEEEecCC--CCH-
Q 040584 2 AKNILVIGG--VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKE--------LA-GYQGNNMTFHKLDL--RDK- 67 (347)
Q Consensus 2 ~~~vlItGa--tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~Dl--~d~- 67 (347)
+|+++|||| +..||.++++.|++.|++|++ .|.....+.....+.. .. +........+.+|+ ++.
T Consensus 9 gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 87 (303)
T PLN02730 9 GKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDTPE 87 (303)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCccc
Confidence 589999999 899999999999999999988 5655554443333321 00 00001135677888 322
Q ss_pred -----------------HHHHHHHccC-----CCcEEEEccccccC--C----ccccCcchhhhhhhhHHHHHHHHHHHc
Q 040584 68 -----------------AALEVVFAGT-----KFDAVIHFAGLKAV--G----ESVQKPLPYFDNNLTGTITLLEVMAAH 119 (347)
Q Consensus 68 -----------------~~~~~~~~~~-----~~d~vih~a~~~~~--~----~~~~~~~~~~~~nv~~~~~l~~~~~~~ 119 (347)
+++.++++.. ++|++|||||.... . .+.+.+...+++|+.++..+++++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~p~ 167 (303)
T PLN02730 88 DVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFGPI 167 (303)
T ss_pred cCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566555431 59999999974321 1 233466778999999999988875543
Q ss_pred --CCCeEEEeccccccCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCCCCCCCC
Q 040584 120 --GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGAHPSGKG 193 (347)
Q Consensus 120 --~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~~~~~~~ 193 (347)
.-++||++||....- +.... ..|+.+|.+.+.+.+.++.+. .++++.++-||.+-.+-.
T Consensus 168 m~~~G~II~isS~a~~~-----------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~---- 232 (303)
T PLN02730 168 MNPGGASISLTYIASER-----------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAA---- 232 (303)
T ss_pred HhcCCEEEEEechhhcC-----------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchh----
Confidence 126999999976531 22223 369999999999999998875 268999999988765410
Q ss_pred CCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 194 EDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. ... ........... . .+ ...+...+|++.++.+++.... ....++.+.+.++.
T Consensus 233 ~---~~~-~~~~~~~~~~~-~---~p-------------l~r~~~peevA~~~~fLaS~~a-~~itG~~l~vdGG~ 286 (303)
T PLN02730 233 K---AIG-FIDDMIEYSYA-N---AP-------------LQKELTADEVGNAAAFLASPLA-SAITGATIYVDNGL 286 (303)
T ss_pred h---ccc-ccHHHHHHHHh-c---CC-------------CCCCcCHHHHHHHHHHHhCccc-cCccCCEEEECCCc
Confidence 0 000 00011111111 0 00 0124578999999999886522 23566777776553
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-15 Score=125.60 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=149.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++.||||||++.||+.++.+|+++|..+.+.+.+.+..++..+++.+. .++..+.+|+++.+++.+..++.
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~-----g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI-----GEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc-----CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999888888777777654 27889999999999888776543
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|++|||||....... .+.-+.++++|+.+...+.+ .+.+.+-++||.++|+.-+ .+..
T Consensus 113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~-----------~g~~ 181 (300)
T KOG1201|consen 113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGL-----------FGPA 181 (300)
T ss_pred CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcc-----------cCCc
Confidence 69999999998765432 33345688999988776655 4556566799999998764 2445
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc-----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD-----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
...+|..||.++.-+-+++..+. .+++++.+-|+.+=- + ++. +.. +
T Consensus 182 gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~T-----------g-------mf~----~~~-~------ 232 (300)
T KOG1201|consen 182 GLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINT-----------G-------MFD----GAT-P------ 232 (300)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccc-----------c-------ccC----CCC-C------
Confidence 56789999999988887776553 357777776654321 1 111 111 1
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
-......+..+.+|+.+..+++.
T Consensus 233 ------~~~l~P~L~p~~va~~Iv~ai~~ 255 (300)
T KOG1201|consen 233 ------FPTLAPLLEPEYVAKRIVEAILT 255 (300)
T ss_pred ------CccccCCCCHHHHHHHHHHHHHc
Confidence 11334578899999999999887
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-14 Score=113.18 Aligned_cols=209 Identities=17% Similarity=0.158 Sum_probs=146.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|||.|+||||.+|+.+++.++++||+|+++.|++.+... ...+.++..|+.|.+++.+.+. +.|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~------------~~~~~i~q~Difd~~~~a~~l~--g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA------------RQGVTILQKDIFDLTSLASDLA--GHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc------------cccceeecccccChhhhHhhhc--CCceE
Confidence 789999999999999999999999999999999876542 1367788999999999999998 68999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
|..-+...... . .........+++..+..++.|++.++.++..-..++ -.-.+.|.-|...|...+..+|.
T Consensus 67 IsA~~~~~~~~-----~---~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-~rLvD~p~fP~ey~~~A~~~ae~ 137 (211)
T COG2910 67 ISAFGAGASDN-----D---ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-TRLVDTPDFPAEYKPEALAQAEF 137 (211)
T ss_pred EEeccCCCCCh-----h---HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-ceeecCCCCchhHHHHHHHHHHH
Confidence 99877542111 1 113334667888888889999999988765422211 12234566677778888888874
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
+ ..+..+. +++||.+-|+..|-|++ .- + +...|+. .+. .+. .|+ .+|...|.
T Consensus 138 L-~~Lr~~~-~l~WTfvSPaa~f~PGe-----rT-g----------~yrlggD-~ll-~n~-----~G~---SrIS~aDY 189 (211)
T COG2910 138 L-DSLRAEK-SLDWTFVSPAAFFEPGE-----RT-G----------NYRLGGD-QLL-VNA-----KGE---SRISYADY 189 (211)
T ss_pred H-HHHhhcc-CcceEEeCcHHhcCCcc-----cc-C----------ceEeccc-eEE-EcC-----CCc---eeeeHHHH
Confidence 3 3333343 69999999999998732 11 1 1112221 121 110 232 57999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEc
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
|-+++.-+++ +...++.|-+
T Consensus 190 AiA~lDe~E~---~~h~rqRftv 209 (211)
T COG2910 190 AIAVLDELEK---PQHIRQRFTV 209 (211)
T ss_pred HHHHHHHHhc---ccccceeeee
Confidence 9999999998 4445565544
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=128.23 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=139.1
Q ss_pred HHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--CCcEEEEccccccCCccc
Q 040584 18 TVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--KFDAVIHFAGLKAVGESV 95 (347)
Q Consensus 18 l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~d~vih~a~~~~~~~~~ 95 (347)
+++.|+++|++|++++|+..... ...++.+|++|.+++.++++.. ++|+||||||... .
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~---------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~ 61 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT---------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----T 61 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh---------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----C
Confidence 47899999999999998765421 1235679999999999988753 5999999999753 2
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC----------------CCCCCCCchhhhH
Q 040584 96 QKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE----------------FPLQAMNPYGRSK 157 (347)
Q Consensus 96 ~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~----------------~~~~~~~~Y~~sK 157 (347)
..++..+++|+.++..+++++... ..++||++||...|+.....+..+. .+......|+.||
T Consensus 62 ~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 141 (241)
T PRK12428 62 APVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSK 141 (241)
T ss_pred CCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHH
Confidence 346778999999999999987753 2359999999998864322111111 2445567899999
Q ss_pred HHHHHHHHHHh-hhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHH-HHHcCCCCceEEecccCCCCCCcee
Q 040584 158 LFIEEICRDVH-RSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVT-QVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 158 ~~~e~~~~~~~-~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
.+.+.+.+.++ .+. .++++++++||.+.++-.. .+..... ...... .. ..
T Consensus 142 ~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~-----------~~~~~~~~~~~~~~---~~------------~~ 195 (241)
T PRK12428 142 EALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILG-----------DFRSMLGQERVDSD---AK------------RM 195 (241)
T ss_pred HHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccc-----------cchhhhhhHhhhhc---cc------------cc
Confidence 99999998888 443 3799999999999876210 0000000 000000 00 01
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
..+...+|+|+++.+++... .....++.+.+.++
T Consensus 196 ~~~~~pe~va~~~~~l~s~~-~~~~~G~~i~vdgg 229 (241)
T PRK12428 196 GRPATADEQAAVLVFLCSDA-ARWINGVNLPVDGG 229 (241)
T ss_pred CCCCCHHHHHHHHHHHcChh-hcCccCcEEEecCc
Confidence 12457899999999987542 12345677777655
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=117.04 Aligned_cols=221 Identities=16% Similarity=0.140 Sum_probs=157.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
++.|++||+.-.||+.+++.|.+.|.+|+++.|.+.....+.++ ....++++.+|+++.+.+.+++... .+|
T Consensus 7 G~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e-------~p~~I~Pi~~Dls~wea~~~~l~~v~pid 79 (245)
T KOG1207|consen 7 GVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE-------TPSLIIPIVGDLSAWEALFKLLVPVFPID 79 (245)
T ss_pred ceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh-------CCcceeeeEecccHHHHHHHhhcccCchh
Confidence 36899999999999999999999999999999986655444333 2345889999999998888887654 589
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCC-CeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGC-KNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~-~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
.++|+||..-..+ ..+.++..|++|+.++.++.+.... .++ +.||.+||.+.. .+....+
T Consensus 80 gLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~-----------R~~~nHt 148 (245)
T KOG1207|consen 80 GLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI-----------RPLDNHT 148 (245)
T ss_pred hhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc-----------cccCCce
Confidence 9999999654332 3456777899999999888776332 233 379999998763 3556678
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHH-HHHcCCCCceEEecccCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVT-QVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~ 227 (347)
.|..+|.+.+.+.+.++-+. ..+++..+-|..|+-.- |. +.|.. -.. .++. + +
T Consensus 149 vYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~M----G~------dnWSDP~K~k~mL~-r---i--------- 205 (245)
T KOG1207|consen 149 VYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDM----GR------DNWSDPDKKKKMLD-R---I--------- 205 (245)
T ss_pred EEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecc----cc------cccCCchhccchhh-h---C---------
Confidence 99999999999999888876 35777888887775321 11 11111 110 1111 0 1
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
..--|.-|+++++|+.+++.... ....|....+.+|
T Consensus 206 ----Pl~rFaEV~eVVnA~lfLLSd~s-smttGstlpveGG 241 (245)
T KOG1207|consen 206 ----PLKRFAEVDEVVNAVLFLLSDNS-SMTTGSTLPVEGG 241 (245)
T ss_pred ----chhhhhHHHHHHhhheeeeecCc-CcccCceeeecCC
Confidence 11237789999999999888732 2345666666544
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=131.56 Aligned_cols=218 Identities=15% Similarity=0.141 Sum_probs=151.9
Q ss_pred cCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc------CCCc
Q 040584 9 GGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG------TKFD 80 (347)
Q Consensus 9 Gat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------~~~d 80 (347)
|++ +.||.+++++|+++|++|++.+|+........+.+.+.. ....+.+|++|.+++.++++. -++|
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD 75 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY-----GAEVIQCDLSDEESVEALFDEAVERFGGRID 75 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT-----TSEEEESCTTSHHHHHHHHHHHHHHHCSSES
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc-----CCceEeecCcchHHHHHHHHHHHhhcCCCeE
Confidence 666 999999999999999999999998776544444444332 233699999999999887653 2699
Q ss_pred EEEEccccccC----Cc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAV----GE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 81 ~vih~a~~~~~----~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++||+++.... .+ ..+.+...+++|+.+...+++++... .-+++|++||..... +....
T Consensus 76 ~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~-----------~~~~~ 144 (241)
T PF13561_consen 76 ILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR-----------PMPGY 144 (241)
T ss_dssp EEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS-----------BSTTT
T ss_pred EEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc-----------cCccc
Confidence 99999997654 22 22345668888999999988877543 125899999986542 33445
Q ss_pred CchhhhHHHHHHHHHHHhhhcC---CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSDS---EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~---~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
..|+.+|.+.+.+++.++.++. ++++.++.||.+..+... . ....-.+........
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~-------~-~~~~~~~~~~~~~~~------------- 203 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTE-------R-IPGNEEFLEELKKRI------------- 203 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHH-------H-HHTHHHHHHHHHHHS-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchh-------c-cccccchhhhhhhhh-------------
Confidence 6899999999999998887753 699999999987754100 0 000001112221110
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....+...+|+|+++.+++.... ....|+++.+.+|
T Consensus 204 ----pl~r~~~~~evA~~v~fL~s~~a-~~itG~~i~vDGG 239 (241)
T PF13561_consen 204 ----PLGRLGTPEEVANAVLFLASDAA-SYITGQVIPVDGG 239 (241)
T ss_dssp ----TTSSHBEHHHHHHHHHHHHSGGG-TTGTSEEEEESTT
T ss_pred ----ccCCCcCHHHHHHHHHHHhCccc-cCccCCeEEECCC
Confidence 01125689999999999998622 3467899988766
|
... |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-15 Score=118.43 Aligned_cols=162 Identities=18% Similarity=0.145 Sum_probs=123.7
Q ss_pred ceEEEEcC-CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGG-VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGa-tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
++|||||+ .|.||.+|++.|.++||.|++..|+.++-..+.. ..++.....|+++++++.+.....
T Consensus 8 k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~---------~~gl~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 8 KKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI---------QFGLKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH---------hhCCeeEEeccCChHHHHHHHHHHhhCC
Confidence 78999975 5999999999999999999999988765433221 236889999999999888765432
Q ss_pred --CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
..|.++|+||..=..+.. ...+.+|++|+.|..+..++..+. .-+.||+++|..+| .|..
T Consensus 79 ~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~-----------vpfp 147 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV-----------VPFP 147 (289)
T ss_pred CCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE-----------eccc
Confidence 589999999964332322 234568999999988887776642 12489999999887 3666
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNP 184 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v 184 (347)
..+.|..||++...+.+.+.-+. .|++++.+-+|.|
T Consensus 148 f~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv 185 (289)
T KOG1209|consen 148 FGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGV 185 (289)
T ss_pred hhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccce
Confidence 77899999999999888775553 4677777776655
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=114.16 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=123.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----T 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 77 (347)
+.+||||||+..||..|+++|++.|.+|++.+|+..+..+.... .+.+....+|+.|.++.+++++. +
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~--------~p~~~t~v~Dv~d~~~~~~lvewLkk~~ 76 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE--------NPEIHTEVCDVADRDSRRELVEWLKKEY 76 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc--------CcchheeeecccchhhHHHHHHHHHhhC
Confidence 36899999999999999999999999999999987776654443 34666788999999877766542 2
Q ss_pred -CCcEEEEccccccCCc------cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE------SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
..+++|||||+-.... ..++.++.+++|+.++..|..++-.+ .-.-||.+||.-.+- |
T Consensus 77 P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv-----------P 145 (245)
T COG3967 77 PNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV-----------P 145 (245)
T ss_pred CchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC-----------c
Confidence 6899999999754322 22233456777999998887765543 334799999977652 4
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVG 186 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G 186 (347)
-.....|..+|++.+.+..++.++. -+++++-+-|+.|--
T Consensus 146 m~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t 187 (245)
T COG3967 146 MASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDT 187 (245)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceec
Confidence 4445579999999998887766553 257777777776654
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-13 Score=113.38 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=134.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++|+|||++..||..++..+..+|+.|+++.|+.++...+.+.+.-... ...+.+.++|+.|.++....+++.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~--~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~ 111 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQ--VEDVSYKSVDVIDYDSVSKVIEELRDLEG 111 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhc--cceeeEeccccccHHHHHHHHhhhhhccC
Confidence 4899999999999999999999999999999998888777766654432 223778999999999999988765
Q ss_pred CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
.+|.+|||||..-++... +..+..+++|-.++.+++.++.. .. .++|+.+||.... .+..
T Consensus 112 ~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~-----------~~i~ 180 (331)
T KOG1210|consen 112 PIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM-----------LGIY 180 (331)
T ss_pred CcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh-----------cCcc
Confidence 599999999976554433 34456889999999999876443 22 3489999986542 2556
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcC--CceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDS--EWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~lR~~~v~G~ 187 (347)
..++|+.+|.+.-.++....++.. ++.+++.-|+..--|
T Consensus 181 GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tp 221 (331)
T KOG1210|consen 181 GYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTP 221 (331)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCC
Confidence 678899999998888877777642 777888777766655
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=119.13 Aligned_cols=167 Identities=20% Similarity=0.165 Sum_probs=121.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch--hHHHHHHHHHhhccCC-CCeEEEecCCCC-HHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA--SEIAVAKVKELAGYQG-NNMTFHKLDLRD-KAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d-~~~~~~~~~~~ 77 (347)
+|+|+||||++.||..+++.|+++|+.|+++.|.... .+...+... ... ..+.+...|+++ .++++.+++..
T Consensus 5 ~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 5 GKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK----EAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH----hcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 5889999999999999999999999999888776654 222222222 011 356778899998 88877666532
Q ss_pred -----CCcEEEEccccccC----C-ccccCcchhhhhhhhHHHHHHHHHHHcCCC--eEEEeccccccCCCCCCCCCCCC
Q 040584 78 -----KFDAVIHFAGLKAV----G-ESVQKPLPYFDNNLTGTITLLEVMAAHGCK--NLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -----~~d~vih~a~~~~~----~-~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~--~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|++|||||.... . ...+..+..+++|+.+...+.+++... .+ +||++||.... .
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~-~~~~~Iv~isS~~~~-~---------- 148 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPL-MKKQRIVNISSVAGL-G---------- 148 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHh-hhhCeEEEECCchhc-C----------
Confidence 49999999997542 1 123456778999999988887743322 22 89999998753 1
Q ss_pred CCCC-CCchhhhHHHHHHHHHHHhhhc--CCceEEEeeccccc
Q 040584 146 PLQA-MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPV 185 (347)
Q Consensus 146 ~~~~-~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~ 185 (347)
..+ ...|+.||.+.+.+.+.++.+. .++.+.++-||.+-
T Consensus 149 -~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 149 -GPPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 112 4789999999999998887553 36889999998443
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-13 Score=108.90 Aligned_cols=210 Identities=15% Similarity=0.200 Sum_probs=140.2
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|. +.|+||||+..||-.|+++|++. |.++++.. |+++++. +++..+ ....+++++++.|+++.+++.++.+++
T Consensus 1 Mspksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~---~~l~~k-~~~d~rvHii~Ldvt~deS~~~~~~~V 76 (249)
T KOG1611|consen 1 MSPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAA---TELALK-SKSDSRVHIIQLDVTCDESIDNFVQEV 76 (249)
T ss_pred CCCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhh---HHHHHh-hccCCceEEEEEecccHHHHHHHHHHH
Confidence 54 67999999999999999999985 77876554 4444432 222221 123679999999999998888776543
Q ss_pred -------CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHH----HHHcCC-----------CeEEEeccc
Q 040584 78 -------KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEV----MAAHGC-----------KNLVFSSSA 130 (347)
Q Consensus 78 -------~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~-----------~~iv~~SS~ 130 (347)
+.|++|+|||...... ..+.+...+++|+.++..+.++ +++... ..||++||.
T Consensus 77 ~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~ 156 (249)
T KOG1611|consen 77 EKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSS 156 (249)
T ss_pred HhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecc
Confidence 7999999999754322 2223456899999998876554 222211 268989887
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcC--CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHH
Q 040584 131 TAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDS--EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVT 208 (347)
Q Consensus 131 ~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~ 208 (347)
+.- .......+..+|+.||.+...+.++.+-+.. ++-++.+.||+|---
T Consensus 157 ~~s--------~~~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TD--------------------- 207 (249)
T KOG1611|consen 157 AGS--------IGGFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTD--------------------- 207 (249)
T ss_pred ccc--------cCCCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcC---------------------
Confidence 542 1112345678999999999999998877753 455566666655321
Q ss_pred HHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc
Q 040584 209 QVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
+.|. -..+.+++-+.-++..+.+.. +..+|.-||-
T Consensus 208 --Mgg~-------------------~a~ltveeSts~l~~~i~kL~-~~hnG~ffn~ 242 (249)
T KOG1611|consen 208 --MGGK-------------------KAALTVEESTSKLLASINKLK-NEHNGGFFNR 242 (249)
T ss_pred --CCCC-------------------CcccchhhhHHHHHHHHHhcC-cccCcceEcc
Confidence 0111 123567777777877777744 3567777765
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-13 Score=115.31 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=126.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc------
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG------ 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~------ 76 (347)
|-|||||+-...|..|+++|.++|+.|.+..-.++..+.+..+.+ .++...+..|+++++++.++.+-
T Consensus 30 k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~------s~rl~t~~LDVT~~esi~~a~~~V~~~l~ 103 (322)
T KOG1610|consen 30 KAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK------SPRLRTLQLDVTKPESVKEAAQWVKKHLG 103 (322)
T ss_pred cEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc------CCcceeEeeccCCHHHHHHHHHHHHHhcc
Confidence 569999999999999999999999999877655555444333221 56888899999999999987652
Q ss_pred -CCCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 -~~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+.=.||||||...+ ++ ..++....+++|+.|+.++..+.... .-+|+|++||+.-- .+.
T Consensus 104 ~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR-----------~~~ 172 (322)
T KOG1610|consen 104 EDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR-----------VAL 172 (322)
T ss_pred cccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC-----------ccC
Confidence 267889999995432 22 34566778999999998887765432 23599999998641 345
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYF 182 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~ 182 (347)
+...+|..||++.|.+...+.++. .|+++.++-||
T Consensus 173 p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG 209 (322)
T KOG1610|consen 173 PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG 209 (322)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 567899999999999998887774 69999999998
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-13 Score=118.49 Aligned_cols=229 Identities=10% Similarity=0.021 Sum_probs=135.2
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHH----------------------HHHHhhccCCCCe
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA----------------------KVKELAGYQGNNM 57 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~----------------------~~~~~~~~~~~~~ 57 (347)
+|+++||||+ ..||+++++.|+++|++|++.++.+ ....... ....+.. .-...
T Consensus 8 gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-d~~~~ 85 (299)
T PRK06300 8 GKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA-SFDTP 85 (299)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhh-hcCCC
Confidence 4789999995 8999999999999999998866431 0000000 0000000 00011
Q ss_pred EEEecCCCC--------HHHHHHHHc----cC-CCcEEEEcccccc--CCc----cccCcchhhhhhhhHHHHHHHHHHH
Q 040584 58 TFHKLDLRD--------KAALEVVFA----GT-KFDAVIHFAGLKA--VGE----SVQKPLPYFDNNLTGTITLLEVMAA 118 (347)
Q Consensus 58 ~~~~~Dl~d--------~~~~~~~~~----~~-~~d~vih~a~~~~--~~~----~~~~~~~~~~~nv~~~~~l~~~~~~ 118 (347)
+-+..|+++ ..++.++++ .+ ++|++|||||... ... +.+++...+++|+.++.++++++..
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122222222 123444443 22 5999999998532 111 2345667889999999999887664
Q ss_pred c--CCCeEEEeccccccCCCCCCCCCCCCCCCCCC-chhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCCCCCCC
Q 040584 119 H--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN-PYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGAHPSGK 192 (347)
Q Consensus 119 ~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~-~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~~~~~~ 192 (347)
. .-+++|++||....- +..... .|+.+|.+.+.+.+.++.+. .++++.++.||.+--+-.
T Consensus 166 ~m~~~G~ii~iss~~~~~-----------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~--- 231 (299)
T PRK06300 166 IMNPGGSTISLTYLASMR-----------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAG--- 231 (299)
T ss_pred HhhcCCeEEEEeehhhcC-----------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhh---
Confidence 3 224899998865431 112222 69999999999999998875 279999999988765410
Q ss_pred CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 193 GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. .. ............ . .+ ...+...+|+++++.+++.... ....++++.+.++.
T Consensus 232 -~---~~-~~~~~~~~~~~~-~---~p-------------~~r~~~peevA~~v~~L~s~~~-~~itG~~i~vdGG~ 285 (299)
T PRK06300 232 -K---AI-GFIERMVDYYQD-W---AP-------------LPEPMEAEQVGAAAAFLVSPLA-SAITGETLYVDHGA 285 (299)
T ss_pred -h---cc-cccHHHHHHHHh-c---CC-------------CCCCcCHHHHHHHHHHHhCccc-cCCCCCEEEECCCc
Confidence 0 00 000011111111 1 00 0124578999999998886522 24567888876553
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-13 Score=145.67 Aligned_cols=173 Identities=15% Similarity=0.186 Sum_probs=131.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchh-----------------------------------------
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNAS----------------------------------------- 39 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~----------------------------------------- 39 (347)
+++++||||++.||..++++|+++ |+.|++++|++...
T Consensus 1997 g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~~ 2076 (2582)
T TIGR02813 1997 DDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRPV 2076 (2582)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccccc
Confidence 478999999999999999999998 69999999872100
Q ss_pred ---HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----CCcEEEEccccccCCc----cccCcchhhhhhhhH
Q 040584 40 ---EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTG 108 (347)
Q Consensus 40 ---~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~ 108 (347)
.+....+..+ ...+.++.++.+|++|.+++.++++.. ++|.|||+||...... +.+.+...+++|+.|
T Consensus 2077 ~~~~ei~~~la~l-~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2077 LSSLEIAQALAAF-KAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred chhHHHHHHHHHH-HhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 0000111111 112457888999999999998877643 5899999999754322 345567789999999
Q ss_pred HHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccC
Q 040584 109 TITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVG 186 (347)
Q Consensus 109 ~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G 186 (347)
+.++++++.....++||++||...+- +......|+.+|...+.+.+.++.+..+.+++++.+|.+-|
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~-----------G~~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdt 2222 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFY-----------GNTGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDG 2222 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcC-----------CCCCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecC
Confidence 99999999877677899999976531 22345679999999999999888887778999999887655
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-13 Score=110.00 Aligned_cols=162 Identities=19% Similarity=0.303 Sum_probs=112.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCch---hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNA---SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+++||||+|.||..+++.|+++|. +++++.|+... .....+.+... +.++.++.+|++|++++.++++..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~----g~~v~~~~~Dv~d~~~v~~~~~~~~~ 77 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA----GARVEYVQCDVTDPEAVAAALAQLRQ 77 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT----T-EEEEEE--TTSHHHHHHHHHTSHT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC----CCceeeeccCccCHHHHHHHHHHHHh
Confidence 689999999999999999999974 78888988322 22233333332 558899999999999999998754
Q ss_pred ---CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccc-cCCCCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATA-YGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~-yg~~~~~~~~e~~~~~~ 149 (347)
.++.|||+|+...... +.+.....+...+.++.+|.+++....+..+|.+||... +| ...
T Consensus 78 ~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G------------~~g 145 (181)
T PF08659_consen 78 RFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLG------------GPG 145 (181)
T ss_dssp TSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-------------TT
T ss_pred ccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhcc------------Ccc
Confidence 5789999999754322 222344566678999999999998888889999999775 33 223
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeeccc
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~ 183 (347)
...|+.+-...+.+++..... +.+++++..+.
T Consensus 146 q~~YaaAN~~lda~a~~~~~~--g~~~~sI~wg~ 177 (181)
T PF08659_consen 146 QSAYAAANAFLDALARQRRSR--GLPAVSINWGA 177 (181)
T ss_dssp BHHHHHHHHHHHHHHHHHHHT--TSEEEEEEE-E
T ss_pred hHhHHHHHHHHHHHHHHHHhC--CCCEEEEEccc
Confidence 467998888888888765443 78888877653
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=101.10 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=118.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||..+|.||||-.|+.|++.+++.+ -.|+++.|+....+. ....+.....|....+++...++ ++
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a-----------t~k~v~q~~vDf~Kl~~~a~~~q--g~ 84 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA-----------TDKVVAQVEVDFSKLSQLATNEQ--GP 84 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc-----------ccceeeeEEechHHHHHHHhhhc--CC
Confidence 5789999999999999999999998 378888876433221 12355667778877788888887 79
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+.|.+-|-+.-. ...+..+++...-...+++++++.||++|+.+||.+.- + +..-.|-..|.+
T Consensus 85 dV~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd------------~-sSrFlY~k~KGE 148 (238)
T KOG4039|consen 85 DVLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD------------P-SSRFLYMKMKGE 148 (238)
T ss_pred ceEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC------------c-ccceeeeeccch
Confidence 9999998854322 22456677777888889999999999999999998762 2 223468999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCC
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAH 188 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~ 188 (347)
.|+-+.++.= -.++++|||.+.|..
T Consensus 149 vE~~v~eL~F----~~~~i~RPG~ll~~R 173 (238)
T KOG4039|consen 149 VERDVIELDF----KHIIILRPGPLLGER 173 (238)
T ss_pred hhhhhhhccc----cEEEEecCcceeccc
Confidence 9998876522 268999999999864
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=108.99 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=128.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHH----HHHHHccCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAA----LEVVFAGTKF 79 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~----~~~~~~~~~~ 79 (347)
=++|||||..||++.+++|+++|++|++++|+.++.+...+++.+.. +-++.++..|.++.+. +.+.+.+..+
T Consensus 51 WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~---~vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 51 WAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY---KVEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred EEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh---CcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 47899999999999999999999999999999999988888776553 3467788889876553 5666666679
Q ss_pred cEEEEccccccCCc--cccC----cchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 80 DAVIHFAGLKAVGE--SVQK----PLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 80 d~vih~a~~~~~~~--~~~~----~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
-++|||+|+....+ ..+. ....+.+|+.++..+.+. +.+.+-+-||++||...- -|.+.
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~-----------~p~p~ 196 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL-----------IPTPL 196 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc-----------ccChh
Confidence 99999999765221 1222 245777888886655443 444455589999997642 25556
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.+.|+.+|...+.+-+.+..++ .++.+-.+-|..|-++
T Consensus 197 ~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTk 236 (312)
T KOG1014|consen 197 LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATK 236 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecc
Confidence 6889999999998888777776 3777777777776654
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=111.55 Aligned_cols=160 Identities=19% Similarity=0.162 Sum_probs=108.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH-HHHHHHHccC--CC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK-AALEVVFAGT--KF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~--~~ 79 (347)
++|||+||||.+|+-+++.|+++|+.|+++.|.......... ......+..-+..|.... +.+..+.+.. ..
T Consensus 80 ~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-----~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~ 154 (411)
T KOG1203|consen 80 TTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-----VFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV 154 (411)
T ss_pred CeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-----ccccccccceeeeccccccchhhhhhhhccccc
Confidence 689999999999999999999999999999998776554332 011122344444544433 3333444432 24
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCC------ch
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN------PY 153 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~------~Y 153 (347)
.+++-+++-.+- .+ +-..-+++.-.|+.++++||+..|++|+|++||+..- ....+.+ .+
T Consensus 155 ~~v~~~~ggrp~--~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~-----------~~~~~~~~~~~~~~~ 220 (411)
T KOG1203|consen 155 VIVIKGAGGRPE--EE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGT-----------KFNQPPNILLLNGLV 220 (411)
T ss_pred eeEEecccCCCC--cc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCc-----------ccCCCchhhhhhhhh
Confidence 566666654332 11 2223346788999999999999999999999987652 1222222 34
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccC
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVG 186 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G 186 (347)
-.+|..+|+++.+ .+++.+++|++...-
T Consensus 221 ~~~k~~~e~~~~~-----Sgl~ytiIR~g~~~~ 248 (411)
T KOG1203|consen 221 LKAKLKAEKFLQD-----SGLPYTIIRPGGLEQ 248 (411)
T ss_pred hHHHHhHHHHHHh-----cCCCcEEEecccccc
Confidence 4788888888764 399999999987654
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=106.43 Aligned_cols=164 Identities=28% Similarity=0.306 Sum_probs=119.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|++++||+.|.||..++++|+++|..+.++..+.+. .+...++....+ ...+.|+.+|+++..++++++++.
T Consensus 5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En-~~a~akL~ai~p--~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN-PEAIAKLQAINP--SVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC-HHHHHHHhccCC--CceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999998887655444 233344443322 567889999999999999888753
Q ss_pred -CCcEEEEccccccCCccccCcchhhhhhhhHHH----HHHHHHHHc--C-CCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTI----TLLEVMAAH--G-CKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~----~l~~~~~~~--~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|++||.||... +.+++..+.+|+.|.. ..+.++.+. | -+-||+.||+.-. +|...
T Consensus 82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL-----------~P~p~ 146 (261)
T KOG4169|consen 82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGL-----------DPMPV 146 (261)
T ss_pred CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccccc-----------Ccccc
Confidence 6999999999854 4567888888877654 445565543 2 2369999997543 34445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc----CCceEEEeeccc
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFN 183 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~ 183 (347)
...|+.||...-.+.++++... .|+.+..+-||.
T Consensus 147 ~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~ 184 (261)
T KOG4169|consen 147 FPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGF 184 (261)
T ss_pred chhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCc
Confidence 5679999988877776643321 377777776654
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=99.68 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=148.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----C
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-----K 78 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 78 (347)
..+|||+...+|+..+++|.+.|..|.+++...++.....+++ +.++.+.+.|++...+++.++... +
T Consensus 11 valvtggasglg~ataerlakqgasv~lldlp~skg~~vakel-------g~~~vf~padvtsekdv~aala~ak~kfgr 83 (260)
T KOG1199|consen 11 VALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL-------GGKVVFTPADVTSEKDVRAALAKAKAKFGR 83 (260)
T ss_pred eEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh-------CCceEEeccccCcHHHHHHHHHHHHhhccc
Confidence 5799999999999999999999999999998887776655554 568889999999999998887542 6
Q ss_pred CcEEEEccccccCC----------ccccCcchhhhhhhhHHHHHHHHHHH----c-----C-CCeEEEeccccccCCCCC
Q 040584 79 FDAVIHFAGLKAVG----------ESVQKPLPYFDNNLTGTITLLEVMAA----H-----G-CKNLVFSSSATAYGWPKV 138 (347)
Q Consensus 79 ~d~vih~a~~~~~~----------~~~~~~~~~~~~nv~~~~~l~~~~~~----~-----~-~~~iv~~SS~~~yg~~~~ 138 (347)
.|..+||||..... ...+++...+++|+.|++|+++.... + | -+-+|.+.|+..|
T Consensus 84 ld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaaf----- 158 (260)
T KOG1199|consen 84 LDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAF----- 158 (260)
T ss_pred eeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeee-----
Confidence 99999999953211 12345566788899999999875331 1 1 2357777777776
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
+.+.....|+.||.+.--+..-.++.. .|++++.+-||.+--| +...+..-++..+....+
T Consensus 159 ------dgq~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tp-----------llsslpekv~~fla~~ip 221 (260)
T KOG1199|consen 159 ------DGQTGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTP-----------LLSSLPEKVKSFLAQLIP 221 (260)
T ss_pred ------cCccchhhhhcccCceEeeechhhhhcccCceEEEeecccccCCh-----------hhhhhhHHHHHHHHHhCC
Confidence 234455789999987665444333332 3888888887764333 222233333333332211
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGT 267 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~ 267 (347)
+ +.. +-|..+.+..+-.++++ +..+++++-+.+
T Consensus 222 -f-----------psr---lg~p~eyahlvqaiien---p~lngevir~dg 254 (260)
T KOG1199|consen 222 -F-----------PSR---LGHPHEYAHLVQAIIEN---PYLNGEVIRFDG 254 (260)
T ss_pred -C-----------chh---cCChHHHHHHHHHHHhC---cccCCeEEEecc
Confidence 1 111 34667788877788888 556778877643
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=103.97 Aligned_cols=223 Identities=17% Similarity=0.147 Sum_probs=145.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
..++.|+.||.|+++++.....++.|..+.|+..+.. .+. + ..+++.+.+|.-...-+...+. ++..++
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~--l~s---w----~~~vswh~gnsfssn~~k~~l~--g~t~v~ 122 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQT--LSS---W----PTYVSWHRGNSFSSNPNKLKLS--GPTFVY 122 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcch--hhC---C----CcccchhhccccccCcchhhhc--CCcccH
Confidence 5788999999999999999999999999988765322 111 1 2355556666543333334444 578888
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~ 163 (347)
-+++... +...+.++|-....+..+++++.++++|+|+|... ||-. +.-+ ..|-.+|.++|..
T Consensus 123 e~~ggfg------n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~~---------~~i~-rGY~~gKR~AE~E 185 (283)
T KOG4288|consen 123 EMMGGFG------NIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGLP---------PLIP-RGYIEGKREAEAE 185 (283)
T ss_pred HHhcCcc------chHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCCC---------Cccc-hhhhccchHHHHH
Confidence 8887544 23456677887778889999999999999999753 2211 2223 3799999999987
Q ss_pred HHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCC---CceEEecccCCCCCCceeeeeeeHH
Q 040584 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR---PALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 164 ~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
+... +.+.-++||||.+||-.+-+ ..... ...+...+.++.+... ..+++ -+......+.++
T Consensus 186 ll~~----~~~rgiilRPGFiyg~R~v~--g~~~p-L~~vg~pl~~~~~~a~k~~~kLp~--------lg~l~~ppvnve 250 (283)
T KOG4288|consen 186 LLKK----FRFRGIILRPGFIYGTRNVG--GIKSP-LHTVGEPLEMVLKFALKPLNKLPL--------LGPLLAPPVNVE 250 (283)
T ss_pred HHHh----cCCCceeeccceeecccccC--ccccc-HHhhhhhHHHHHHhhhchhhcCcc--------cccccCCCcCHH
Confidence 7653 25778999999999963221 11111 1111223334333331 12333 246677899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHH
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFE 281 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~ 281 (347)
+||.+.+.++++ +. |- ..+++.|+.++..
T Consensus 251 ~VA~aal~ai~d---p~-----f~----Gvv~i~eI~~~a~ 279 (283)
T KOG4288|consen 251 SVALAALKAIED---PD-----FK----GVVTIEEIKKAAH 279 (283)
T ss_pred HHHHHHHHhccC---CC-----cC----ceeeHHHHHHHHH
Confidence 999999999887 22 21 2466667665543
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=94.42 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=83.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (347)
++++||||+|.||..+++.|.++|++|++++|+........+.+... +....++.+|+++.+++.+++++ .
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL----GGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999998765444333333321 34567789999999988876542 1
Q ss_pred CCcEEEEccccccCCccc-c-CcchhhhhhhhHHHHH----HHHHHHc-------CCCeEEEeccccc
Q 040584 78 KFDAVIHFAGLKAVGESV-Q-KPLPYFDNNLTGTITL----LEVMAAH-------GCKNLVFSSSATA 132 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~-~-~~~~~~~~nv~~~~~l----~~~~~~~-------~~~~iv~~SS~~~ 132 (347)
++|++|||||........ + ..+.....|+.++... ....++. +.+||..+||...
T Consensus 93 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 93 RIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred CCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 699999999965432211 1 1111223344444333 3332222 3457888887654
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-11 Score=96.00 Aligned_cols=105 Identities=22% Similarity=0.267 Sum_probs=78.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++|||||||+|. +++.|.+.||+|+++.|++.........+.. ..++.++.+|++|.+++.+++++.
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~-----~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g 74 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTT-----PESITPLPLDYHDDDALKLAIKSTIEKNG 74 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhc-----CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57999999998876 9999999999999998875443322221211 346788899999999999887642
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC----eEEEecccc
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK----NLVFSSSAT 131 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~----~iv~~SS~~ 131 (347)
.+|++|+.+ ++.++.++..+|++.+++ +|+++=...
T Consensus 75 ~id~lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 75 PFDLAVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred CCeEEEEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 456666554 455677999999999988 899876443
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-11 Score=99.07 Aligned_cols=168 Identities=20% Similarity=0.165 Sum_probs=112.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc---c-
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA---G- 76 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~- 76 (347)
|.+.+|+||++..||..++..+..++-+.....+.....+ .+.+....+.......+|+.+..-+..+.+ .
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-----~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k 79 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-----LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKK 79 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-----ccceEEEecCCcceechHHHHHHHHHHHHhhhhhc
Confidence 4577999999999999999999998876654433332221 111111111222233455554443333332 1
Q ss_pred -CCCcEEEEccccccCC-------ccccCcchhhhhhhhHHHHHHHHHHHc--C---CCeEEEeccccccCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVG-------ESVQKPLPYFDNNLTGTITLLEVMAAH--G---CKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~-------~~~~~~~~~~~~nv~~~~~l~~~~~~~--~---~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
.+-|+||||||..... ...+.+..+|+.|+.++..+...+... + .+.+|++||...-
T Consensus 80 ~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav---------- 149 (253)
T KOG1204|consen 80 GGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV---------- 149 (253)
T ss_pred CCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh----------
Confidence 1589999999965431 123356779999999999887766543 2 2579999997653
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhcC-CceEEEeecccc
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSDS-EWKIILLRYFNP 184 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~lR~~~v 184 (347)
.|......|+.+|++.+.+++..+.+.+ ++.+...+||.+
T Consensus 150 -~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvv 190 (253)
T KOG1204|consen 150 -RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVV 190 (253)
T ss_pred -ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcc
Confidence 3667778899999999999999988875 777888888765
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=93.46 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=126.4
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhCCC-----eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLGGY-----KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~g~-----~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
|| |.++|||++..||-++|++|++..- .+++..|+-++.++....+....+....+++++..|+++-.++..+.
T Consensus 1 ~~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~ 80 (341)
T KOG1478|consen 1 MMRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRAS 80 (341)
T ss_pred CCceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHH
Confidence 44 5689999999999999999999754 35677899999999998888887766678889999999988777665
Q ss_pred ccC-----CCcEEEEccccccCCc-------------------------------cccCcchhhhhhhhHHHHHHHHHHH
Q 040584 75 AGT-----KFDAVIHFAGLKAVGE-------------------------------SVQKPLPYFDNNLTGTITLLEVMAA 118 (347)
Q Consensus 75 ~~~-----~~d~vih~a~~~~~~~-------------------------------~~~~~~~~~~~nv~~~~~l~~~~~~ 118 (347)
++. +.|.|+-+||....+. +.+.--++|+.||.|..-+++....
T Consensus 81 ~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~p 160 (341)
T KOG1478|consen 81 KDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEP 160 (341)
T ss_pred HHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhh
Confidence 432 6999999999654311 2233446889999999888776543
Q ss_pred c----CCCeEEEeccccccCCCCCCCCCCCC-CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeeccc
Q 040584 119 H----GCKNLVFSSSATAYGWPKVVPCTEEF-PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFN 183 (347)
Q Consensus 119 ~----~~~~iv~~SS~~~yg~~~~~~~~e~~-~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~ 183 (347)
. ...++|.+||...- ... .--|+. -.....+|..||...+.+-.+..+.. .|+.--++.||.
T Consensus 161 ll~~~~~~~lvwtSS~~a~--kk~-lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~ 229 (341)
T KOG1478|consen 161 LLCHSDNPQLVWTSSRMAR--KKN-LSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGI 229 (341)
T ss_pred HhhcCCCCeEEEEeecccc--ccc-CCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCce
Confidence 2 23489999997652 111 111222 23456789999999987665554443 134444445544
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-11 Score=78.90 Aligned_cols=62 Identities=55% Similarity=1.037 Sum_probs=43.9
Q ss_pred HHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCCC
Q 040584 279 AFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340 (347)
Q Consensus 279 ~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~~ 340 (347)
.+.++.|.++++...+.+++++...+.|++|++++|||+|+++++++|+++++|+++|+.+|
T Consensus 1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~Gy 62 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPNGY 62 (62)
T ss_dssp HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTTTT
T ss_pred CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcCCC
Confidence 36788999999999999999999999999999999999999999999999999999999876
|
... |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.4e-10 Score=98.91 Aligned_cols=173 Identities=16% Similarity=0.104 Sum_probs=114.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+||.|+|++|.+|+.++..|+.++ .++.++++...... .. .+.+. ... ....+.+|+.++.+.++ ++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~-a~-Dl~~~----~~~--~~v~~~td~~~~~~~l~--ga 77 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV-AA-DLSHI----DTP--AKVTGYADGELWEKALR--GA 77 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc-cc-chhhc----CcC--ceEEEecCCCchHHHhC--CC
Confidence 4799999999999999999999665 68999988321111 11 11111 111 22334455555566777 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCC--CCCCCCCCCCCCchhhhH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~--~~~e~~~~~~~~~Y~~sK 157 (347)
|+||++||.... ......+.+..|+..+.++++++++++++++|+++|.-+-....-. ...+....++...||.+-
T Consensus 78 DvVVitaG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~ 155 (321)
T PTZ00325 78 DLVLICAGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTT 155 (321)
T ss_pred CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechh
Confidence 999999997532 2234567889999999999999999999999999997663221100 112334556777788773
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCC
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAH 188 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~ 188 (347)
...-++-...++.. ++....++ +.|+|-|
T Consensus 156 LDs~R~r~~la~~l-~v~~~~V~-~~VlGeH 184 (321)
T PTZ00325 156 LDVVRARKFVAEAL-GMNPYDVN-VPVVGGH 184 (321)
T ss_pred HHHHHHHHHHHHHh-CcChhheE-EEEEeec
Confidence 33334444445554 67766766 7888865
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-08 Score=88.60 Aligned_cols=173 Identities=16% Similarity=0.062 Sum_probs=101.6
Q ss_pred ceEEEEcCCCcccHH--HHHHHHhCCCeEEEEeCCCchhHH--------HHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 3 KNILVIGGVGYIGSH--TVLQLLLGGYKTVVVDNLDNASEI--------AVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 3 ~~vlItGatG~iG~~--l~~~L~~~g~~v~~~~r~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
|++||||+++.+|.+ +++.| +.|+.|+++++...+... ..+.+.+.....+.....+.+|+++.+++.+
T Consensus 42 K~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~~ 120 (398)
T PRK13656 42 KKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQK 120 (398)
T ss_pred CEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 799999999999999 89999 999999888754322110 0111111111113356678999999998887
Q ss_pred HHccC-----CCcEEEEccccccCCc-----------------cccC---------------cc---h-hhhhhhhHHHH
Q 040584 73 VFAGT-----KFDAVIHFAGLKAVGE-----------------SVQK---------------PL---P-YFDNNLTGTIT 111 (347)
Q Consensus 73 ~~~~~-----~~d~vih~a~~~~~~~-----------------~~~~---------------~~---~-~~~~nv~~~~~ 111 (347)
+++.. ++|+|||++|...... .... +. + .-.+.++|...
T Consensus 121 lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMgged 200 (398)
T PRK13656 121 VIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMGGED 200 (398)
T ss_pred HHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhccch
Confidence 76542 6999999999763211 0000 00 0 11235566544
Q ss_pred H---HHHHHHcCC----CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcC--CceEEEeecc
Q 040584 112 L---LEVMAAHGC----KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDS--EWKIILLRYF 182 (347)
Q Consensus 112 l---~~~~~~~~~----~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~lR~~ 182 (347)
+ +++....++ .++|-.|.... ... .|.-....-|.+|..+|..++.++.+.. ++++.++-.+
T Consensus 201 w~~Wi~al~~a~lla~g~~~va~TY~G~---~~t------~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~i~~g 271 (398)
T PRK13656 201 WELWIDALDEAGVLAEGAKTVAYSYIGP---ELT------HPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDAYVSVLK 271 (398)
T ss_pred HHHHHHHHHhcccccCCcEEEEEecCCc---cee------ecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecC
Confidence 3 333333321 25555554221 100 1111123568999999999998887752 5566666555
Q ss_pred ccc
Q 040584 183 NPV 185 (347)
Q Consensus 183 ~v~ 185 (347)
.+-
T Consensus 272 ~~~ 274 (398)
T PRK13656 272 AVV 274 (398)
T ss_pred ccc
Confidence 444
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-09 Score=94.89 Aligned_cols=172 Identities=18% Similarity=0.096 Sum_probs=116.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||+|+|++|.+|+.++..|+.++ .++.+++....... .. .+.+- .... ...++.+.+++.+.++ ++|
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~-a~-Dl~~~----~~~~--~i~~~~~~~d~~~~l~--~aD 88 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV-AA-DVSHI----NTPA--QVRGFLGDDQLGDALK--GAD 88 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee-Ec-hhhhC----CcCc--eEEEEeCCCCHHHHcC--CCC
Confidence 589999999999999999999776 48899987662111 11 11110 0111 2223334445677787 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC--CCCCCCCCCCCCCCCCchhhhHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW--PKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~--~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
+|||+||.... ......+.+..|...+.++++.+++++...+|+++|.-+=+. ..........+.+|...||.++.
T Consensus 89 iVVitAG~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L 166 (323)
T PLN00106 89 LVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 166 (323)
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence 99999997543 234567788999999999999999999888888888543100 00001112345667788999998
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCC
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAH 188 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~ 188 (347)
..+++-..+++.. +++...++ +.|+|-|
T Consensus 167 Ds~Rl~~~lA~~l-gv~~~~V~-~~ViGeH 194 (323)
T PLN00106 167 DVVRANTFVAEKK-GLDPADVD-VPVVGGH 194 (323)
T ss_pred hHHHHHHHHHHHh-CCChhheE-EEEEEeC
Confidence 8888888888776 77776664 4667754
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.5e-09 Score=93.09 Aligned_cols=98 Identities=27% Similarity=0.323 Sum_probs=78.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
||+|+|+|+ |++|+.+++.|+++| ++|++.+|+..+....... ..++++....|+.|.+.+.+++++ .|
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~-------~~~~v~~~~vD~~d~~al~~li~~--~d 70 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL-------IGGKVEALQVDAADVDALVALIKD--FD 70 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh-------ccccceeEEecccChHHHHHHHhc--CC
Confidence 589999997 999999999999998 9999999987665543322 134789999999999999999995 69
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S 128 (347)
+|||++.+.. ...++++|.+.|+ ++|=+|
T Consensus 71 ~VIn~~p~~~------------------~~~i~ka~i~~gv-~yvDts 99 (389)
T COG1748 71 LVINAAPPFV------------------DLTILKACIKTGV-DYVDTS 99 (389)
T ss_pred EEEEeCCchh------------------hHHHHHHHHHhCC-CEEEcc
Confidence 9999987532 2267888888877 565444
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-07 Score=75.57 Aligned_cols=225 Identities=16% Similarity=0.135 Sum_probs=135.0
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|++||+|-. .-|+..+++.|.+.|.++......+ +. .+.+.++...-+ ....+++|+++.+++.+++.+.
T Consensus 6 GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l---~krv~~la~~~~-s~~v~~cDV~~d~~i~~~f~~i~~ 80 (259)
T COG0623 6 GKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RL---EKRVEELAEELG-SDLVLPCDVTNDESIDALFATIKK 80 (259)
T ss_pred CceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HH---HHHHHHHHhhcc-CCeEEecCCCCHHHHHHHHHHHHH
Confidence 4899999964 5799999999999999998766554 22 233333322111 2346899999999999888653
Q ss_pred ---CCcEEEEccccccCCcc--------ccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEe---ccccccCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGES--------VQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFS---SSATAYGWPKVVPC 141 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~~--------~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~---SS~~~yg~~~~~~~ 141 (347)
+.|.|||+.|..+-.+- .+.+...+++-......++++++.. +-..+|.. +|.-
T Consensus 81 ~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r---------- 150 (259)
T COG0623 81 KWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSER---------- 150 (259)
T ss_pred hhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecccee----------
Confidence 69999999997542221 1222222233333333444444432 12234433 3322
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
..+.++..|.+|++.|.-++.++.+. .++++..+-.|.+=--..+ + +.-++++++.....
T Consensus 151 ----~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAas-------g-----I~~f~~~l~~~e~~-- 212 (259)
T COG0623 151 ----VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAAS-------G-----IGDFRKMLKENEAN-- 212 (259)
T ss_pred ----ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhh-------c-----cccHHHHHHHHHhh--
Confidence 23456788999999999999888875 3566655554433110000 0 11122222211111
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
...+.-+.++||.+...+++.... +...|++.+|.+|-.+
T Consensus 213 -----------aPl~r~vt~eeVG~tA~fLlSdLs-sgiTGei~yVD~G~~i 252 (259)
T COG0623 213 -----------APLRRNVTIEEVGNTAAFLLSDLS-SGITGEIIYVDSGYHI 252 (259)
T ss_pred -----------CCccCCCCHHHhhhhHHHHhcchh-cccccceEEEcCCcee
Confidence 112235679999999999888744 4678899999877543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.4e-08 Score=88.18 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=77.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-------CeEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-------YKTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-------~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
.||+||||+|++|++++..|+..+ .+++++++.... .+...-.+.+ .......|+....++.+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d-------~~~~~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD-------CAFPLLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh-------ccccccCCceecCCHHHH
Confidence 379999999999999999999854 589999986532 1110000000 000112244445566677
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CC-eEEEecc
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CK-NLVFSSS 129 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~-~iv~~SS 129 (347)
++ ++|+|||+||.... ...+..+.++.|+.-...+.+...++. .. .+|.+|.
T Consensus 76 l~--~aDiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 76 FK--DVDVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred hC--CCCEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 77 69999999997543 234557889999999999998888773 23 5666664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-08 Score=85.97 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=56.7
Q ss_pred CceEEEEcCC----------------CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGGV----------------GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGat----------------G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+|+||||+|. ||+|++|+++|+++|++|+++++......... . .......+..|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~---~-----~~~~~~~V~s~~d 74 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDI---N-----NQLELHPFEGIID 74 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCccc---C-----CceeEEEEecHHH
Confidence 5899999886 99999999999999999998876432111000 0 0112334455333
Q ss_pred CHHHHHHHHccCCCcEEEEccccccCCc
Q 040584 66 DKAALEVVFAGTKFDAVIHFAGLKAVGE 93 (347)
Q Consensus 66 d~~~~~~~~~~~~~d~vih~a~~~~~~~ 93 (347)
..+.+.+++...++|+|||+||+..+.+
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAvsD~~~ 102 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAGSDWVV 102 (229)
T ss_pred HHHHHHHHhcccCCCEEEECccccceec
Confidence 3356777776446999999999866543
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=83.06 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=70.6
Q ss_pred eEEEEcCCCcccHHHHHHHHh----CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLL----GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~----~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.++|.|||||.|..+++++.+ .|...-+.+|+..+..+..+.+.+-.+..-+...++.+|.+|++++.+.++ .+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak--~~ 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK--QA 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh--hh
Confidence 489999999999999999999 788898999999988877776655443332333488899999999999999 58
Q ss_pred cEEEEcccccc
Q 040584 80 DAVIHFAGLKA 90 (347)
Q Consensus 80 d~vih~a~~~~ 90 (347)
.+|+||+|+..
T Consensus 85 ~vivN~vGPyR 95 (423)
T KOG2733|consen 85 RVIVNCVGPYR 95 (423)
T ss_pred EEEEeccccce
Confidence 99999999754
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=81.78 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=74.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||+||||. |+.|++.|.+.||+|++..++....+.... .+...+..+..|.+++.+++++.++|+|
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~----------~g~~~v~~g~l~~~~l~~~l~~~~i~~V 69 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI----------HQALTVHTGALDPQELREFLKRHSIDIL 69 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc----------cCCceEEECCCCHHHHHHHHHhcCCCEE
Confidence 68999999999 999999999999999998887764432111 1233455667788889999988789999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeE
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~i 124 (347)
|+++.+.. ...+.++.++|++.+++-+
T Consensus 70 IDAtHPfA---------------~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 70 VDATHPFA---------------AQITTNATAVCKELGIPYV 96 (256)
T ss_pred EEcCCHHH---------------HHHHHHHHHHHHHhCCcEE
Confidence 99986542 2446789999999988633
|
This enzyme was found to be a monomer by gel filtration. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-07 Score=84.62 Aligned_cols=94 Identities=26% Similarity=0.340 Sum_probs=69.1
Q ss_pred EEEEcCCCcccHHHHHHHHhCC-C-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGG-Y-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g-~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|.|| |++|+.+++.|++.+ + +|++.+|+..+.+...+.+ ...++..+..|+.|.+++.++++ ++|+|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~--~~dvV 71 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL------LGDRVEAVQVDVNDPESLAELLR--GCDVV 71 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--------TTTTEEEEE--TTTHHHHHHHHT--TSSEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc------cccceeEEEEecCCHHHHHHHHh--cCCEE
Confidence 799999 999999999999986 4 8999999877665544332 24689999999999999999999 58999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEE
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVF 126 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~ 126 (347)
|||+++.. ...++++|.+.|+ ++|-
T Consensus 72 in~~gp~~------------------~~~v~~~~i~~g~-~yvD 96 (386)
T PF03435_consen 72 INCAGPFF------------------GEPVARACIEAGV-HYVD 96 (386)
T ss_dssp EE-SSGGG------------------HHHHHHHHHHHT--EEEE
T ss_pred EECCccch------------------hHHHHHHHHHhCC-Ceec
Confidence 99998641 1257777777776 5665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.3e-07 Score=80.53 Aligned_cols=168 Identities=11% Similarity=0.049 Sum_probs=111.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
+||.|+||+|.+|+.++..|+..|. ++.+++..... .....-.+.+........+.+. . .+ .+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~--~~----~~~ 75 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D--DP----NVA 75 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c--Cc----HHH
Confidence 5899999999999999999998875 78888874432 2211111111110000112211 1 11 344
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC-C-eEEEecccc---ccCCCCCCCCCCCCC-C
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-K-NLVFSSSAT---AYGWPKVVPCTEEFP-L 147 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~-~iv~~SS~~---~yg~~~~~~~~e~~~-~ 147 (347)
++ ++|+||.+||.... ..++..+.+..|+.-.+.+.+...++.. . .+|.+|.-. +|- .-...+ .
T Consensus 76 ~~--daDivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~sg~~ 145 (322)
T cd01338 76 FK--DADWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI------AMKNAPDI 145 (322)
T ss_pred hC--CCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH------HHHHcCCC
Confidence 55 69999999997532 2345567889999999999999888762 3 566666411 110 001122 5
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 188 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~ 188 (347)
++...||.++...+++...+++.. +++...+|..+|||+|
T Consensus 146 p~~~ViG~t~LDs~Rl~~~la~~l-gv~~~~v~~~~V~GeH 185 (322)
T cd01338 146 PPDNFTAMTRLDHNRAKSQLAKKA-GVPVTDVKNMVIWGNH 185 (322)
T ss_pred ChHheEEehHHHHHHHHHHHHHHh-CcChhHeEEEEEEeCC
Confidence 566789999999999999998886 8899999999999986
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-07 Score=78.98 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHHHccCCCcEEEEccc
Q 040584 10 GVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVVFAGTKFDAVIHFAG 87 (347)
Q Consensus 10 atG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~d~vih~a~ 87 (347)
+|||+|++|+++|+++|++|+++.|....... ...++.++.++..+ .+.+.+.+. ++|+|||+||
T Consensus 24 SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~-----------~~~~v~~i~v~s~~~m~~~l~~~~~--~~DivIh~AA 90 (229)
T PRK06732 24 STGQLGKIIAETFLAAGHEVTLVTTKTAVKPE-----------PHPNLSIIEIENVDDLLETLEPLVK--DHDVLIHSMA 90 (229)
T ss_pred cchHHHHHHHHHHHhCCCEEEEEECcccccCC-----------CCCCeEEEEEecHHHHHHHHHHHhc--CCCEEEeCCc
Confidence 48999999999999999999999865321100 01245555543322 234555555 5899999999
Q ss_pred ccc
Q 040584 88 LKA 90 (347)
Q Consensus 88 ~~~ 90 (347)
...
T Consensus 91 vsd 93 (229)
T PRK06732 91 VSD 93 (229)
T ss_pred cCC
Confidence 765
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=77.92 Aligned_cols=116 Identities=19% Similarity=0.097 Sum_probs=78.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHh---CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL---GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~---~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|||+|+||+|.+|++++..|.. .++++.+++|++.......+ +.+ ......+.+ .+.+++.+.++ ++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l~~-----~~~~~~i~~--~~~~d~~~~l~--~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-LSH-----IPTAVKIKG--FSGEDPTPALE--GA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-hhc-----CCCCceEEE--eCCCCHHHHcC--CC
Confidence 7899999999999999998855 35688888876432110011 111 011112222 11233445566 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
|+||.++|.... ......+.+..|+..+..+++++++++.+++|.+.|-
T Consensus 71 DiVIitaG~~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 71 DVVLISAGVARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 999999997542 2234567889999999999999999988888888774
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=72.46 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=61.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++|+||+|.+|+.+++.|++.|++|+++.|+..+.....+.+... .+......|..+.+++.+++. ++|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~--~~di 100 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR-----FGEGVGAVETSDDAARAAAIK--GADV 100 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh-----cCCcEEEeeCCCHHHHHHHHh--cCCE
Confidence 378999999999999999999999999999998765554444433221 133455678888888888887 5899
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||++.+.
T Consensus 101 Vi~at~~ 107 (194)
T cd01078 101 VFAAGAA 107 (194)
T ss_pred EEECCCC
Confidence 9997653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-06 Score=65.17 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=79.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+||+|.+|++++..|...+ .++.++++.....+...-.+.+............. .++ +.++ ++|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~--~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDY----EALK--DAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSG----GGGT--TES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccc----cccc--ccc
Confidence 689999999999999999999986 58999998866555444444444322222222323 222 2344 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||-+||.... ..+...+.++.|+...+.+.+..++.+.. .++.+|
T Consensus 72 ivvitag~~~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 72 IVVITAGVPRK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EEEETTSTSSS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEEEecccccc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 99999997532 22345678899999999999999888643 455554
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.32 E-value=5e-06 Score=74.81 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=74.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCC-------CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---------
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGG-------YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK--------- 67 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g-------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--------- 67 (347)
||.|+||+|.+|+.++..|+..| ++++++++.... + ..+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~-~---------------~~~g~~~Dl~d~~~~~~~~~~ 65 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM-K---------------ALEGVVMELQDCAFPLLKGVV 65 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc-C---------------ccceeeeehhhhcccccCCcE
Confidence 79999999999999999999865 258888876510 0 112233444443
Q ss_pred --HHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CC-eEEEecc
Q 040584 68 --AALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CK-NLVFSSS 129 (347)
Q Consensus 68 --~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~-~iv~~SS 129 (347)
....+.++ ++|+|||+||.... ..+...+.+..|+.-.+.+.+..++.. .. .+|.+|.
T Consensus 66 i~~~~~~~~~--~aDiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 66 ITTDPEEAFK--DVDVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EecChHHHhC--CCCEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 23456666 69999999997532 234567788999999999999988873 43 5666653
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.7e-06 Score=78.53 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=59.0
Q ss_pred CceEEEEcC----------------CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGG----------------VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGa----------------tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+++|+|||| +|.+|.+++++|.++|++|++++++..... ..+ ....|++
T Consensus 188 gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~-------------~~~--~~~~dv~ 252 (399)
T PRK05579 188 GKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPT-------------PAG--VKRIDVE 252 (399)
T ss_pred CCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccC-------------CCC--cEEEccC
Confidence 479999999 999999999999999999999987642110 112 2457899
Q ss_pred CHHHHHHHHccC--CCcEEEEccccccCC
Q 040584 66 DKAALEVVFAGT--KFDAVIHFAGLKAVG 92 (347)
Q Consensus 66 d~~~~~~~~~~~--~~d~vih~a~~~~~~ 92 (347)
+.+++.+++.+. .+|++||+||+..+.
T Consensus 253 ~~~~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 253 SAQEMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred CHHHHHHHHHHhcCCCCEEEEcccccccc
Confidence 988888877532 589999999976543
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-06 Score=73.52 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=75.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH--------
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA-------- 68 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-------- 68 (347)
+|.|+||+|.+|+.++..|...|. +++++++..... ..+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~----------------~a~g~~~Dl~d~~~~~~~~~~ 64 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK----------------VLEGVVMELMDCAFPLLDGVV 64 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc----------------ccceeEeehhcccchhcCcee
Confidence 589999999999999999998553 588888754421 1223344554443
Q ss_pred ---HHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-C-CeEEEecc
Q 040584 69 ---ALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-C-KNLVFSSS 129 (347)
Q Consensus 69 ---~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~-~~iv~~SS 129 (347)
+..+.++ ++|+|||+||.... ..++..+.+..|+.-.+.+.+...++. . ..+|.+|.
T Consensus 65 ~~~~~~~~~~--~aDiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 65 PTHDPAVAFT--DVDVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred ccCChHHHhC--CCCEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 3345566 69999999997542 233457788999999999999998873 3 35666664
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.1e-06 Score=74.12 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=50.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-C-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-G-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+++|+||||+|+||+.+++.|+++ | .+++++.|+..+......++ ..+++ .++.+++. ++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el-------------~~~~i---~~l~~~l~--~a 216 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAEL-------------GGGKI---LSLEEALP--EA 216 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHh-------------ccccH---HhHHHHHc--cC
Confidence 479999999999999999999865 5 68888888755444332221 11233 24567777 59
Q ss_pred cEEEEcccccc
Q 040584 80 DAVIHFAGLKA 90 (347)
Q Consensus 80 d~vih~a~~~~ 90 (347)
|+|||+++...
T Consensus 217 DiVv~~ts~~~ 227 (340)
T PRK14982 217 DIVVWVASMPK 227 (340)
T ss_pred CEEEECCcCCc
Confidence 99999998643
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-06 Score=71.64 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=46.5
Q ss_pred CCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----C-CCcEEEE
Q 040584 10 GVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----T-KFDAVIH 84 (347)
Q Consensus 10 atG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~-~~d~vih 84 (347)
++|+||.+++++|+++|++|+++++... . . ......+|+.+.++..++++. . ++|++||
T Consensus 23 SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-l-------~--------~~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVn 86 (227)
T TIGR02114 23 STGHLGKIITETFLSAGHEVTLVTTKRA-L-------K--------PEPHPNLSIREIETTKDLLITLKELVQEHDILIH 86 (227)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEcChhh-c-------c--------cccCCcceeecHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4899999999999999999998865311 0 0 000134688887777665432 1 5899999
Q ss_pred ccccccC
Q 040584 85 FAGLKAV 91 (347)
Q Consensus 85 ~a~~~~~ 91 (347)
+||....
T Consensus 87 nAgv~d~ 93 (227)
T TIGR02114 87 SMAVSDY 93 (227)
T ss_pred CCEeccc
Confidence 9997554
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.2e-05 Score=69.76 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=60.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCC---chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLD---NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+++++|+|| |.+|++++..|++.|+. |+++.|+. .+.+...+.+... ...+.....|+.+.+++.+.++
T Consensus 126 ~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~----~~~~~~~~~d~~~~~~~~~~~~-- 198 (289)
T PRK12548 126 GKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE----VPECIVNVYDLNDTEKLKAEIA-- 198 (289)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc----CCCceeEEechhhhhHHHhhhc--
Confidence 478999998 89999999999999986 99999986 3444444433221 2244455678888888887777
Q ss_pred CCcEEEEcccccc
Q 040584 78 KFDAVIHFAGLKA 90 (347)
Q Consensus 78 ~~d~vih~a~~~~ 90 (347)
.+|+|||+.....
T Consensus 199 ~~DilINaTp~Gm 211 (289)
T PRK12548 199 SSDILVNATLVGM 211 (289)
T ss_pred cCCEEEEeCCCCC
Confidence 4799999876543
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=72.71 Aligned_cols=104 Identities=12% Similarity=0.130 Sum_probs=70.6
Q ss_pred CceEEEEcC----------------CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGG----------------VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGa----------------tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+++|+|||| ||.+|.++++.|..+|++|+++.++..... ...+ ...|++
T Consensus 185 ~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~-------------~~~~--~~~~v~ 249 (390)
T TIGR00521 185 GKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLT-------------PPGV--KSIKVS 249 (390)
T ss_pred CceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCC-------------CCCc--EEEEec
Confidence 478999998 467999999999999999999876543210 1122 457888
Q ss_pred CHHHH-HHHHccC--CCcEEEEccccccCCccccC----c--chhhhhhhhHHHHHHHHHHHcC
Q 040584 66 DKAAL-EVVFAGT--KFDAVIHFAGLKAVGESVQK----P--LPYFDNNLTGTITLLEVMAAHG 120 (347)
Q Consensus 66 d~~~~-~~~~~~~--~~d~vih~a~~~~~~~~~~~----~--~~~~~~nv~~~~~l~~~~~~~~ 120 (347)
+.+++ +.+++.. ++|++|++||+..+...... . ...+..|+.-+..++...++..
T Consensus 250 ~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 250 TAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred cHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 88888 5455221 58999999998765432111 1 1223456677777788777643
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=67.95 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=60.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
..++|.||+||.|.-++++|.++|..-.+..|+..+...+...+ ++. +-..++-+++.+++.+. +.++|
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L-------G~~--~~~~p~~~p~~~~~~~~--~~~VV 75 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL-------GPE--AAVFPLGVPAALEAMAS--RTQVV 75 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc-------Ccc--ccccCCCCHHHHHHHHh--cceEE
Confidence 46899999999999999999999999888888877766555444 222 33344455888888888 68999
Q ss_pred EEcccccc
Q 040584 83 IHFAGLKA 90 (347)
Q Consensus 83 ih~a~~~~ 90 (347)
+||+|+..
T Consensus 76 lncvGPyt 83 (382)
T COG3268 76 LNCVGPYT 83 (382)
T ss_pred Eecccccc
Confidence 99999754
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00029 Score=63.33 Aligned_cols=115 Identities=17% Similarity=0.266 Sum_probs=79.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|+ |.+|+.++..|+.+| +++.++++.....+.....+.+............. .+.+ .+. ++|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~----~l~--~aD 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYS----DCK--DAD 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHH----HhC--CCC
Confidence 58999995 999999999999999 68999999887766555555443221112222222 2222 244 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||.++|.... ...+..+.++.|+.-.+.+.+.+++.+.. .+|.+|.
T Consensus 71 IVIitag~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 71 IVVITAGAPQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999997532 23345678888999999999998887643 5666664
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-05 Score=71.52 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=64.5
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~ 78 (347)
|+|+|.|.||||++|..|++.|+++ ++++..+.+.+...+..... .......|+.+.+.+... ++ +
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~----------~~~l~~~~~~~~~~~~~~~~~--~ 104 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSV----------FPHLITQDLPNLVAVKDADFS--D 104 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhh----------CccccCccccceecCCHHHhc--C
Confidence 5689999999999999999999998 78998887654332211111 111122333322222322 44 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
+|+||-+.+.. ....++..+ +.+ .++|-.|+..-+-
T Consensus 105 ~DvVf~Alp~~------------------~s~~i~~~~-~~g-~~VIDlSs~fRl~ 140 (381)
T PLN02968 105 VDAVFCCLPHG------------------TTQEIIKAL-PKD-LKIVDLSADFRLR 140 (381)
T ss_pred CCEEEEcCCHH------------------HHHHHHHHH-hCC-CEEEEcCchhccC
Confidence 89999986421 344566665 344 4899999987653
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=64.61 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=72.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCC--chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLD--NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|||.|+|++|.+|..++..|+..|+ +|++++|.. +......-.+.+.....+....+... .| .+. +. +
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~--~d---~~~-l~--~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKIS--SD---LSD-VA--G 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEEC--CC---HHH-hC--C
Confidence 6899999999999999999999986 489999854 22211111111110000111111111 12 233 55 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+|+||-++|.... ......+.++.|+.-.+.+++...+.... .+|.+++
T Consensus 73 aDiViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 73 SDIVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred CCEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999999996432 12233567788999999999887776433 6777776
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00031 Score=63.79 Aligned_cols=110 Identities=20% Similarity=0.330 Sum_probs=74.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC---------------------chhHHHHHHHHHhhccCCCCeEE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD---------------------NASEIAVAKVKELAGYQGNNMTF 59 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 59 (347)
..+|+|.| .|.+|+++++.|.+.|. +++++++.. .+.....+.+.++.+ .-.++.
T Consensus 24 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp--~v~v~~ 100 (339)
T PRK07688 24 EKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS--DVRVEA 100 (339)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC--CcEEEE
Confidence 46899999 59999999999999997 788887642 222323344444422 223455
Q ss_pred EecCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 60 ~~~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
+..++. .+.+.++++ ++|+||.+.. |...-..+.++|.+.++ .+|+.++...||.
T Consensus 101 ~~~~~~-~~~~~~~~~--~~DlVid~~D-----------------n~~~r~~ln~~~~~~~i-P~i~~~~~g~~G~ 155 (339)
T PRK07688 101 IVQDVT-AEELEELVT--GVDLIIDATD-----------------NFETRFIVNDAAQKYGI-PWIYGACVGSYGL 155 (339)
T ss_pred EeccCC-HHHHHHHHc--CCCEEEEcCC-----------------CHHHHHHHHHHHHHhCC-CEEEEeeeeeeeE
Confidence 566664 455667777 5899999953 22333356778888876 6888888777664
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0003 Score=63.79 Aligned_cols=110 Identities=16% Similarity=0.288 Sum_probs=73.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC---------------------chhHHHHHHHHHhhccCCCCeEE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD---------------------NASEIAVAKVKELAGYQGNNMTF 59 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 59 (347)
.++|+|.| .|.+|+++++.|.+.|. +++++++.. .+.....+.+.++.+ .-.++.
T Consensus 24 ~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp--~v~i~~ 100 (338)
T PRK12475 24 EKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS--EVEIVP 100 (338)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC--CcEEEE
Confidence 46899999 57799999999999997 677777653 223333344444422 234556
Q ss_pred EecCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 60 ~~~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
+..|+. .+.+.++++ ++|+||.+.. |...-..+-+.|.+.++ .+|+.+....+|.
T Consensus 101 ~~~~~~-~~~~~~~~~--~~DlVid~~D-----------------~~~~r~~in~~~~~~~i-p~i~~~~~g~~G~ 155 (338)
T PRK12475 101 VVTDVT-VEELEELVK--EVDLIIDATD-----------------NFDTRLLINDLSQKYNI-PWIYGGCVGSYGV 155 (338)
T ss_pred EeccCC-HHHHHHHhc--CCCEEEEcCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEecccEEE
Confidence 667775 456777787 5899999963 22222345567888776 6888887776653
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00095 Score=63.16 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=101.8
Q ss_pred ceEEEEcCC-CcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----
Q 040584 3 KNILVIGGV-GYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG---- 76 (347)
Q Consensus 3 ~~vlItGat-G~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---- 76 (347)
+.++||||+ |.||..++.+|++-|..|++...+-+ ......+.+-.....++...-++.+++..+.++..+++=
T Consensus 397 ~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg~e 476 (866)
T COG4982 397 KVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIGDE 476 (866)
T ss_pred ceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhccc
Confidence 568999975 89999999999999999998753322 222222333333344566677788888877777766531
Q ss_pred ---------------CCCcEEEEccccccCCccc-c--CcchhhhhhhhHHHHHHHHHHHcC----CC---eEEEecccc
Q 040584 77 ---------------TKFDAVIHFAGLKAVGESV-Q--KPLPYFDNNLTGTITLLEVMAAHG----CK---NLVFSSSAT 131 (347)
Q Consensus 77 ---------------~~~d~vih~a~~~~~~~~~-~--~~~~~~~~nv~~~~~l~~~~~~~~----~~---~iv~~SS~~ 131 (347)
-.+|.+|-.|++.-.+.-. . ..+..+++-+....+++-..++.+ +. |+|...|-.
T Consensus 477 q~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgSPN 556 (866)
T COG4982 477 QTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGSPN 556 (866)
T ss_pred cccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCCCC
Confidence 0478999999876544321 1 223455666666667776666543 21 566666532
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc
Q 040584 132 AYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD 171 (347)
Q Consensus 132 ~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~ 171 (347)
- | ....-..|+.+|.+.|.++..|..+.
T Consensus 557 r-G-----------~FGgDGaYgEsK~aldav~~RW~sEs 584 (866)
T COG4982 557 R-G-----------MFGGDGAYGESKLALDAVVNRWHSES 584 (866)
T ss_pred C-C-----------ccCCCcchhhHHHHHHHHHHHhhccc
Confidence 1 1 12234689999999999998887663
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00025 Score=60.56 Aligned_cols=74 Identities=26% Similarity=0.327 Sum_probs=59.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d~ 81 (347)
|+++|.| .|.+|..+++.|.+.||+|+++.+.+......... ......+.+|-+|.+.|+++ ++ .+|+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~--------~~~~~~v~gd~t~~~~L~~agi~--~aD~ 69 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD--------ELDTHVVIGDATDEDVLEEAGID--DADA 69 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh--------hcceEEEEecCCCHHHHHhcCCC--cCCE
Confidence 6788888 88999999999999999999999877664432210 12567788999999999988 55 6899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
+|-+.+
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 998865
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00031 Score=60.62 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
||++|+|+|||+= |+.|++.|.+.|+.|++..-...... .......+.+-+.|.+++..++++.+++
T Consensus 1 ~~~~IlvlgGT~e-gr~la~~L~~~g~~v~~Svat~~g~~------------~~~~~~v~~G~l~~~~~l~~~l~~~~i~ 67 (248)
T PRK08057 1 MMPRILLLGGTSE-ARALARALAAAGVDIVLSLAGRTGGP------------ADLPGPVRVGGFGGAEGLAAYLREEGID 67 (248)
T ss_pred CCceEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCCCc------------ccCCceEEECCCCCHHHHHHHHHHCCCC
Confidence 8899999999987 99999999999998876543332211 0235567778888999999999988999
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeE
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~i 124 (347)
+||+..-+.. ...+.++.++|++.+++-+
T Consensus 68 ~VIDATHPfA---------------~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 68 LVIDATHPYA---------------AQISANAAAACRALGIPYL 96 (248)
T ss_pred EEEECCCccH---------------HHHHHHHHHHHHHhCCcEE
Confidence 9999975432 2346688999999988643
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00075 Score=60.74 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=78.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|+ |.+|+.++..|+..|. ++.+++++........-.+.+..... ..+..... + ++ .++ ++|
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~i~~~---~---~~-~~~--~ad 75 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-SPTKIYAG---D---YS-DCK--DAD 75 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeEEEeC---C---HH-HhC--CCC
Confidence 68999997 9999999999999986 78999987776554444444432211 22333222 2 22 355 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||.+||.... ......+.+..|+.-.+.+++.+++.+.. .+|.+|.
T Consensus 76 ivIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 76 LVVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred EEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99999997532 22345678888999999999998887644 5555553
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=66.31 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEE-ecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH-KLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~ 78 (347)
||++|+|+||||++|+.+++.|++. ++++.++.+.....+...+... .+..+ ..+..+.+.. .+. +
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~--------~~~~~~~~~~~~~~~~--~~~--~ 68 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHP--------HLRGLVDLVLEPLDPE--ILA--G 68 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCc--------ccccccCceeecCCHH--Hhc--C
Confidence 7899999999999999999999987 6888776653332221111111 11111 1122222222 334 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccccc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAY 133 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~y 133 (347)
+|+||-+.... ....++..+.+.|+ ++|=.|+..-+
T Consensus 69 vD~Vf~alP~~------------------~~~~~v~~a~~aG~-~VID~S~~fR~ 104 (343)
T PRK00436 69 ADVVFLALPHG------------------VSMDLAPQLLEAGV-KVIDLSADFRL 104 (343)
T ss_pred CCEEEECCCcH------------------HHHHHHHHHHhCCC-EEEECCcccCC
Confidence 89999886421 12245566666664 78888887654
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0021 Score=50.56 Aligned_cols=147 Identities=19% Similarity=0.203 Sum_probs=83.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC---CHH----HHHHHHc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR---DKA----ALEVVFA 75 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---d~~----~~~~~~~ 75 (347)
.+|+|.|+-|-+|+++++.+..++|.|.-++....... ..-..+.+|-+ ..+ ++.+.+.
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~A--------------d~sI~V~~~~swtEQe~~v~~~vg~sL~ 69 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA--------------DSSILVDGNKSWTEQEQSVLEQVGSSLQ 69 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc--------------cceEEecCCcchhHHHHHHHHHHHHhhc
Confidence 68999999999999999999999999987765443211 01112233322 111 2234455
Q ss_pred cCCCcEEEEcccccc--CCc---cccCcchhhhhhhhHHHHHHHHHH-HcCCCeEEEeccc-cccCCCCCCCCCCCCCCC
Q 040584 76 GTKFDAVIHFAGLKA--VGE---SVQKPLPYFDNNLTGTITLLEVMA-AHGCKNLVFSSSA-TAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 76 ~~~~d~vih~a~~~~--~~~---~~~~~~~~~~~nv~~~~~l~~~~~-~~~~~~iv~~SS~-~~yg~~~~~~~~e~~~~~ 148 (347)
+.++|.||..||--. ... ...+.+.+++..+....--...+. ..+.+-++.+..+ ... .+.+
T Consensus 70 gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl-----------~gTP 138 (236)
T KOG4022|consen 70 GEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAAL-----------GGTP 138 (236)
T ss_pred ccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccccccc-----------CCCC
Confidence 558999999998321 111 122223333333322211111111 1222334444333 222 2345
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcCCc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDSEW 174 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~~~ 174 (347)
..-.||..|.+..++.++++.+..|+
T Consensus 139 gMIGYGMAKaAVHqLt~SLaak~SGl 164 (236)
T KOG4022|consen 139 GMIGYGMAKAAVHQLTSSLAAKDSGL 164 (236)
T ss_pred cccchhHHHHHHHHHHHHhcccccCC
Confidence 56789999999999999988775444
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00095 Score=56.05 Aligned_cols=109 Identities=25% Similarity=0.349 Sum_probs=70.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+++++.|...|. +++++++.. .+.+...+.+.++.+ .-.++.+.
T Consensus 21 ~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~v~i~~~~ 97 (202)
T TIGR02356 21 NSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS--DIQVTALK 97 (202)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC--CCEEEEeh
Confidence 36899999 88999999999999996 777777652 223333444444422 12333344
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
..+. .+.+.+++. ++|+||.+.. |...-..+.+.|++.++ .+|+.++.+.+|
T Consensus 98 ~~i~-~~~~~~~~~--~~D~Vi~~~d-----------------~~~~r~~l~~~~~~~~i-p~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERVT-AENLELLIN--NVDLVLDCTD-----------------NFATRYLINDACVALGT-PLISAAVVGFGG 149 (202)
T ss_pred hcCC-HHHHHHHHh--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEeccCeE
Confidence 4443 455677777 5899999863 22223346677888876 688887766554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00043 Score=62.41 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=73.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
+||.|+||+|.+|+.++..|+..|. ++.+++..... .....-.+.+........+.+. . ...+.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~------~~y~~ 77 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D------DPNVA 77 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c------ChHHH
Confidence 6999999999999999999998763 78888875432 2211111211110001112211 1 11234
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEecc
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSS 129 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS 129 (347)
++ ++|+||-+||.... ..++..+.+..|+.-.+.+.+...++. -..+|.+|.
T Consensus 78 ~~--daDiVVitaG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 78 FK--DADVALLVGARPRG--PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred hC--CCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 45 59999999996432 234567788999999999999988843 336666664
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00046 Score=65.62 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+|+|+|+++ +|..+++.|++.|++|++.++.... .....+.+.. .++.++..|..+ .... ++|
T Consensus 5 ~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~------~~~~~~~~~~~~-----~~~~--~~d 70 (450)
T PRK14106 5 GKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE------LGIELVLGEYPE-----EFLE--GVD 70 (450)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh------cCCEEEeCCcch-----hHhh--cCC
Confidence 47999999877 9999999999999999999876422 2111222222 246677777765 2233 589
Q ss_pred EEEEccccc
Q 040584 81 AVIHFAGLK 89 (347)
Q Consensus 81 ~vih~a~~~ 89 (347)
+||+++|..
T Consensus 71 ~vv~~~g~~ 79 (450)
T PRK14106 71 LVVVSPGVP 79 (450)
T ss_pred EEEECCCCC
Confidence 999999864
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=64.66 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=58.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeE---EEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKT---VVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|++|+|.||||++|+.|++.|.++||.+ ..+.+.....+... + .+......|+.+. .++ +
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-----~-----~g~~i~v~d~~~~-----~~~--~ 63 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-----F-----KGKELKVEDLTTF-----DFS--G 63 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-----e-----CCceeEEeeCCHH-----HHc--C
Confidence 4789999999999999999999988754 66665543322110 0 1123334455432 234 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
+|+||.+++... +..++..+.+.|+ ++|=.|+..
T Consensus 64 vDvVf~A~g~g~------------------s~~~~~~~~~~G~-~VIDlS~~~ 97 (334)
T PRK14874 64 VDIALFSAGGSV------------------SKKYAPKAAAAGA-VVIDNSSAF 97 (334)
T ss_pred CCEEEECCChHH------------------HHHHHHHHHhCCC-EEEECCchh
Confidence 999999876421 2345555555666 677667654
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00055 Score=61.65 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=74.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCCCc--hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNLDN--ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
.||.|+||+|++|++++..|+..|. ++.+++.... ......-.+.+........+.+ .. ...+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~~------~~~~~ 76 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-TT------DPEEA 76 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-ec------ChHHH
Confidence 3899999999999999999998874 7888887542 2222222222221000111211 11 12344
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC-C-eEEEecc
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-K-NLVFSSS 129 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~-~iv~~SS 129 (347)
++ ++|+||.+||...- ..++..+.+..|+.-.+.+.+.+.++.. . .++.+|.
T Consensus 77 ~~--daDvVVitAG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 77 FK--DVDAALLVGAFPRK--PGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred hC--CCCEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 55 59999999997532 2345677889999999999999888754 3 5555553
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0003 Score=72.06 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=57.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCe-------------EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYK-------------TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK 67 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~-------------v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 67 (347)
+++|+|+|| |++|+..++.|++. +++ |.+.++.....+...+. .+++..+..|..|.
T Consensus 569 ~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~--------~~~~~~v~lDv~D~ 639 (1042)
T PLN02819 569 SQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEG--------IENAEAVQLDVSDS 639 (1042)
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHh--------cCCCceEEeecCCH
Confidence 468999995 99999999999875 344 66676655444333222 12567789999999
Q ss_pred HHHHHHHccCCCcEEEEcccc
Q 040584 68 AALEVVFAGTKFDAVIHFAGL 88 (347)
Q Consensus 68 ~~~~~~~~~~~~d~vih~a~~ 88 (347)
+++.++++ ++|+||.+...
T Consensus 640 e~L~~~v~--~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVS--QVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhc--CCCEEEECCCc
Confidence 99999988 59999999864
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=58.00 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=76.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCC-CCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQG-NNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
||.|+|+ |.+|+.++..|+.++. ++.+++...+......-.+.+...... ..+....+| . +.++ ++|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~---y----~~~~--~aD 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD---Y----DDCA--DAD 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC---H----HHhC--CCC
Confidence 6899997 9999999999999874 788998876655443333433221111 133444333 2 3345 599
Q ss_pred EEEEccccccCCccccC--cchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQK--PLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~--~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||-+||....+ ... ..+.+..|+.-.+.+.+.+.+++.. .+|.+|.
T Consensus 71 ivvitaG~~~kp--g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 71 IIVITAGPSIDP--GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred EEEECCCCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 999999975321 122 3678888999999999999988754 4444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00049 Score=61.52 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=75.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|++|.+|++++..|+..| .++.+++.+ ......-.+.+-. ......... ..+++.+.++ ++|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~----~~~~i~~~~--~~~~~y~~~~--daD 70 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN----TPAKVTGYL--GPEELKKALK--GAD 70 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC----CcceEEEec--CCCchHHhcC--CCC
Confidence 689999999999999999999888 478888876 2211111111110 111111110 1122445566 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||-+||.... ..+...+.++.|+.-...+.+..++++.. .+|.+|.
T Consensus 71 ivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 71 VVVIPAGVPRK--PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99999997532 23456778899999999999998887643 6666665
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=55.26 Aligned_cols=75 Identities=25% Similarity=0.273 Sum_probs=54.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++++|.|+ |..|+.++..|.+.|.. |+++.|+..+...+.+.+. ...+.++.. +++.+.+. .+|
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~------~~~~~~~~~-----~~~~~~~~--~~D 77 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG------GVNIEAIPL-----EDLEEALQ--EAD 77 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT------GCSEEEEEG-----GGHCHHHH--TES
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC------ccccceeeH-----HHHHHHHh--hCC
Confidence 479999995 88999999999999987 8999998777666555541 223444443 33446666 589
Q ss_pred EEEEcccccc
Q 040584 81 AVIHFAGLKA 90 (347)
Q Consensus 81 ~vih~a~~~~ 90 (347)
+||++.+...
T Consensus 78 ivI~aT~~~~ 87 (135)
T PF01488_consen 78 IVINATPSGM 87 (135)
T ss_dssp EEEE-SSTTS
T ss_pred eEEEecCCCC
Confidence 9999987543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0019 Score=56.48 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=44.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEE-EeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVV-VDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+++|.|+|++|.+|+.+++.+.+. +.++.+ +++.+...... -..++...+++.++++ .+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----------------~~~~i~~~~dl~~ll~--~~ 61 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----------------GALGVAITDDLEAVLA--DA 61 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----------------CCCCccccCCHHHhcc--CC
Confidence 378999999999999999998864 788876 44443322110 1112323345566665 58
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||+++.+
T Consensus 62 DvVid~t~p 70 (257)
T PRK00048 62 DVLIDFTTP 70 (257)
T ss_pred CEEEECCCH
Confidence 999988753
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00057 Score=65.02 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=58.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d~ 81 (347)
|+|+|+|+ |.+|+++++.|.+.|++|+++++++...+...+ ..++..+.+|.++...+.++ ++ ++|.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~---------~~~~~~~~gd~~~~~~l~~~~~~--~a~~ 68 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD---------RLDVRTVVGNGSSPDVLREAGAE--DADL 68 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh---------hcCEEEEEeCCCCHHHHHHcCCC--cCCE
Confidence 58999996 999999999999999999999887654433221 12577889999999988887 65 5899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||-+..
T Consensus 69 vi~~~~ 74 (453)
T PRK09496 69 LIAVTD 74 (453)
T ss_pred EEEecC
Confidence 988753
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=64.13 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=33.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
|+|.|+| .|.+|..++..|+++|++|++.+|++...+.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~ 40 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAAA 40 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHH
Confidence 6899999 9999999999999999999999998765443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00069 Score=51.87 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=56.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhC-CCeEE-EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG-GYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~-g~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||.|+||||++|+.|++.|++. .+++. ++.++.+.........+.. .........+ .+.+. +. ++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~-~~~~~----~~--~~Dv 69 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHP----KGFEDLSVED-ADPEE----LS--DVDV 69 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGG----TTTEEEBEEE-TSGHH----HT--TESE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcccc----ccccceeEee-cchhH----hh--cCCE
Confidence 6999999999999999999996 45665 4455542332222221111 1111121122 23332 24 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
||.|.+.. ....+...+.+.|+ ++|=.|+..
T Consensus 70 vf~a~~~~------------------~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 70 VFLALPHG------------------ASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp EEE-SCHH------------------HHHHHHHHHHHTTS-EEEESSSTT
T ss_pred EEecCchh------------------HHHHHHHHHhhCCc-EEEeCCHHH
Confidence 99997531 13356666677777 677666654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=62.65 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=70.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+|+ |.+|+.+++.|.+.|++|+++++++...+...+. ..++..+.+|.++.+.+.++--. ++|.
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~--------~~~~~~i~gd~~~~~~L~~~~~~-~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE--------LPNTLVLHGDGTDQELLEEEGID-EADA 300 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH--------CCCCeEEECCCCCHHHHHhcCCc-cCCE
Confidence 478999995 9999999999999999999998776544332221 23567889999999988766433 6898
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
||-+..- + ..|.. +...+++.+..++|......
T Consensus 301 vi~~~~~--------~-----~~n~~----~~~~~~~~~~~~ii~~~~~~ 333 (453)
T PRK09496 301 FIALTND--------D-----EANIL----SSLLAKRLGAKKVIALVNRP 333 (453)
T ss_pred EEECCCC--------c-----HHHHH----HHHHHHHhCCCeEEEEECCc
Confidence 8865421 1 23443 33345566666776655443
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=57.66 Aligned_cols=77 Identities=12% Similarity=0.183 Sum_probs=47.6
Q ss_pred CceEEEEcC----------------CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGG----------------VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGa----------------tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+++||||+| ||..|.+|++.+..+|++|+.+.....-.. ..++..+.. .
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~-------------p~~~~~i~v--~ 67 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP-------------PPGVKVIRV--E 67 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------------TTEEEEE---S
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccceEEEe--c
Confidence 578899865 799999999999999999999876632110 235666554 4
Q ss_pred CHHHHHHHHccC--CCcEEEEccccccCCc
Q 040584 66 DKAALEVVFAGT--KFDAVIHFAGLKAVGE 93 (347)
Q Consensus 66 d~~~~~~~~~~~--~~d~vih~a~~~~~~~ 93 (347)
..+++.+.+... ..|++||+|++..+.+
T Consensus 68 sa~em~~~~~~~~~~~Di~I~aAAVsDf~p 97 (185)
T PF04127_consen 68 SAEEMLEAVKELLPSADIIIMAAAVSDFRP 97 (185)
T ss_dssp SHHHHHHHHHHHGGGGSEEEE-SB--SEEE
T ss_pred chhhhhhhhccccCcceeEEEecchhheee
Confidence 555555444321 4799999999876543
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0025 Score=54.63 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=68.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCC-------------------CchhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNL-------------------DNASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
+.+|+|.| .|.+|+++++.|...|. ++++++.. ..+.+...+.+.++.+ .-+++.+.
T Consensus 21 ~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~~~i~~~~ 97 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP--DVEIEAYN 97 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC--CCEEEEec
Confidence 46899999 89999999999999996 44444221 1223333444444422 12344555
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
.++ +.+.+.+++. ++|+||.+..- ...-..+.+.|++.++ .+|+.+....+|
T Consensus 98 ~~i-~~~~~~~~~~--~~DvVi~~~d~-----------------~~~r~~l~~~~~~~~i-p~i~~g~~g~~g 149 (228)
T cd00757 98 ERL-DAENAEELIA--GYDLVLDCTDN-----------------FATRYLINDACVKLGK-PLVSGAVLGFEG 149 (228)
T ss_pred cee-CHHHHHHHHh--CCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 555 3456677777 58999999642 1222346677888876 688877665544
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0029 Score=48.80 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=64.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
+++++.| +| -|.+++..|.+.|++|++++.++...+... + ..+..+..|+.+++- ++-+ ++|.|
T Consensus 18 ~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~----~------~~~~~v~dDlf~p~~--~~y~--~a~li 81 (134)
T PRK04148 18 KKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAK----K------LGLNAFVDDLFNPNL--EIYK--NAKLI 81 (134)
T ss_pred CEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHH----H------hCCeEEECcCCCCCH--HHHh--cCCEE
Confidence 6799999 77 799999999999999999998776443222 1 256789999987662 3333 47777
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEec
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSS 128 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S 128 (347)
+-+= .|.++ ...+++.+++.++.-+|..=
T Consensus 82 ysir----------pp~el-------~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 82 YSIR----------PPRDL-------QPFILELAKKINVPLIIKPL 110 (134)
T ss_pred EEeC----------CCHHH-------HHHHHHHHHHcCCCEEEEcC
Confidence 6552 12222 23688889998887555443
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=59.38 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=73.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||.|+|++|.+|++++..|+.++. ++.++++.+... ... .+.+. .......... +.+++.+.++ ++|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g-~a~-DL~~~----~~~~~i~~~~--~~~~~~~~~~--daDi 70 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAG-VAA-DLSHI----PTAASVKGFS--GEEGLENALK--GADV 70 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcE-EEc-hhhcC----CcCceEEEec--CCCchHHHcC--CCCE
Confidence 689999999999999999998875 788888765211 111 11110 0111121100 0112345666 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
||-+||.... ......+.+..|+.-.+.+.+...+.+.. .+|.+|.
T Consensus 71 vvitaG~~~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 71 VVIPAGVPRK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EEEeCCCCCC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 9999997532 23445678888999999999988887644 5665554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00081 Score=51.71 Aligned_cols=97 Identities=27% Similarity=0.334 Sum_probs=56.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-CCCeEEE-EeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-GGYKTVV-VDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|.|.|++|.+|+.+++.+.+ .++++.+ ++|+++... -+.+..+.+....++ .-.++++++++. +|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~--g~d~g~~~~~~~~~~-------~v~~~l~~~~~~--~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV--GKDVGELAGIGPLGV-------PVTDDLEELLEE--AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT--TSBCHHHCTSST-SS-------BEBS-HHHHTTH---S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc--cchhhhhhCcCCccc-------ccchhHHHhccc--CC
Confidence 6899999999999999999999 6888764 556552111 000001111001111 113557788874 99
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
+||++.. -..+...++.|.++++ .+|.-+|
T Consensus 70 VvIDfT~------------------p~~~~~~~~~~~~~g~-~~ViGTT 99 (124)
T PF01113_consen 70 VVIDFTN------------------PDAVYDNLEYALKHGV-PLVIGTT 99 (124)
T ss_dssp EEEEES-------------------HHHHHHHHHHHHHHT--EEEEE-S
T ss_pred EEEEcCC------------------hHHhHHHHHHHHhCCC-CEEEECC
Confidence 9999962 2334567788888876 5554333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0018 Score=57.45 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=74.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|| |++|+.++..|+.++ .++.+++......+-..-.+.+......... .+.+| .+ -+.++ +.|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~-~i~~~-~~----y~~~~--~aD 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDV-KITGD-GD----YEDLK--GAD 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCce-EEecC-CC----hhhhc--CCC
Confidence 68999999 999999999998875 4888998875444332222222211111111 12222 22 23344 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+|+-.||...- ......+.++.|..-...+.+...+.... .|+.+|.
T Consensus 72 iVvitAG~prK--pGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN 119 (313)
T COG0039 72 IVVITAGVPRK--PGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119 (313)
T ss_pred EEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 99999996542 22345678889999999999988887654 4444443
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=58.88 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=72.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
||||.|+|+ |.+|..++..|+..|. +|+++++...........+.+..........+ .. ..+++ .++ ++|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~----~~d~~-~~~--~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TG----TNDYE-DIA--GSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-Ee----CCCHH-HHC--CCC
Confidence 479999998 9999999999999875 99999987665433222221111100111111 11 11232 355 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||.+++.+.. ......+.+..|+.-...+++.+.+...+ .+|.++.
T Consensus 73 iVii~~~~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 73 VVVITAGVPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred EEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999986432 12233455667888888888888776533 4665554
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0039 Score=58.26 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=78.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhC-------CC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG-------GY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~-------g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
||.|+|++|.+|.+++..|+.. |. ++..++++.+..+...-.+.+........+.+.. .++ +.+
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~---~~y----e~~ 174 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI---DPY----EVF 174 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec---CCH----HHh
Confidence 7999999999999999999988 64 7888888877765544444332210111222222 122 334
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHH-cCC-CeEEEecc
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA-HGC-KNLVFSSS 129 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~-~~~-~~iv~~SS 129 (347)
+ ++|+||-.||...- ......+.++.|+.-.+.+.+...+ .+. ..+|.+|.
T Consensus 175 k--daDiVVitAG~prk--pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 175 Q--DAEWALLIGAKPRG--PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred C--cCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 4 59999999997532 2345577889999999999999988 453 36666664
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=47.23 Aligned_cols=71 Identities=30% Similarity=0.318 Sum_probs=53.6
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIH 84 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (347)
|+|.| .|-+|..+++.|.+.+.+|+++.+++...+...+ .++..+.+|.+|.+.++++--. +++.||-
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----------~~~~~i~gd~~~~~~l~~a~i~-~a~~vv~ 68 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----------EGVEVIYGDATDPEVLERAGIE-KADAVVI 68 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----------TTSEEEES-TTSHHHHHHTTGG-CESEEEE
T ss_pred eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----------cccccccccchhhhHHhhcCcc-ccCEEEE
Confidence 67888 5789999999999987799999877554333221 2578999999999999987433 6888887
Q ss_pred ccc
Q 040584 85 FAG 87 (347)
Q Consensus 85 ~a~ 87 (347)
+..
T Consensus 69 ~~~ 71 (116)
T PF02254_consen 69 LTD 71 (116)
T ss_dssp ESS
T ss_pred ccC
Confidence 753
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.006 Score=47.64 Aligned_cols=109 Identities=24% Similarity=0.360 Sum_probs=70.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc-------------------hhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN-------------------ASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
.++|+|.| .|.+|+.+++.|.+.|. ++++++...- +.+...+.+.++.+ .-+++.+.
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np--~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP--DVEVEAIP 78 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST--TSEEEEEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC--ceeeeeee
Confidence 36899999 89999999999999997 5666554321 11223344444422 23455666
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
.++ +.+...++++ ++|+||.+.. +...-..+.+.|++.+. .+|+.++...+|
T Consensus 79 ~~~-~~~~~~~~~~--~~d~vi~~~d-----------------~~~~~~~l~~~~~~~~~-p~i~~~~~g~~G 130 (135)
T PF00899_consen 79 EKI-DEENIEELLK--DYDIVIDCVD-----------------SLAARLLLNEICREYGI-PFIDAGVNGFYG 130 (135)
T ss_dssp SHC-SHHHHHHHHH--TSSEEEEESS-----------------SHHHHHHHHHHHHHTT--EEEEEEEETTEE
T ss_pred ccc-cccccccccc--CCCEEEEecC-----------------CHHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 666 4566778887 5899999853 22233356778888876 788888766554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=56.06 Aligned_cols=40 Identities=30% Similarity=0.357 Sum_probs=34.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA 42 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~ 42 (347)
|+|.|+||+|.+|+.++..|.+.|++|.+.+|++++....
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l 40 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEA 40 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHH
Confidence 5799999999999999999999999999998876655443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0007 Score=61.27 Aligned_cols=94 Identities=21% Similarity=0.321 Sum_probs=55.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEE---EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV---VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++|+|+||||++|..|++.|.+++|.+. .+.......+. +. + . + ...++.+.+.. . ++ ++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~----l~-~----~-~---~~l~~~~~~~~-~-~~--~v 67 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHS----VP-F----A-G---KNLRVREVDSF-D-FS--QV 67 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCe----ec-c----C-C---cceEEeeCChH-H-hc--CC
Confidence 6899999999999999999998776543 33322221110 00 0 0 1 11222222221 2 34 59
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATA 132 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~ 132 (347)
|+||.+++.. ....++..+.+.|+ ++|=.|+..-
T Consensus 68 D~vFla~p~~------------------~s~~~v~~~~~~G~-~VIDlS~~fR 101 (336)
T PRK05671 68 QLAFFAAGAA------------------VSRSFAEKARAAGC-SVIDLSGALP 101 (336)
T ss_pred CEEEEcCCHH------------------HHHHHHHHHHHCCC-eEEECchhhc
Confidence 9999987421 12246677777776 6877787764
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0036 Score=56.24 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=77.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.+||.|+|+ |.+|+.++..|+..| -++.+++.+..........+.+...... ....... .|+ +. ++ ++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~-~~~v~~~--~dy---~~-~~--~a 72 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLK-NPKIEAD--KDY---SV-TA--NS 72 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCC-CCEEEEC--CCH---HH-hC--CC
Confidence 369999995 999999999999887 4788898877655444444443321111 1122221 123 32 55 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||-+||.... ......+.+..|+.-.+.+.+..++.+.+ .+|.+|.
T Consensus 73 divvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 73 KVVIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 999999997542 22345678888999999999999888643 5666654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0054 Score=55.13 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=73.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|.|.|+ |.+|..++..|+.+| .+|.+++++..........+.+.... ......... |. +.++ ++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-~~~~~i~~~---d~----~~l~--~aD 69 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-VKPVRIYAG---DY----ADCK--GAD 69 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-cCCeEEeeC---CH----HHhC--CCC
Confidence 47999996 999999999999999 68999998776544222222221111 111222222 22 2355 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||.+++.... ......+....|+.....+++.+++.+.. .++.++
T Consensus 70 iViita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 70 VVVITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999986432 22344566777999898898888877533 455554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0047 Score=57.16 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=69.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCC-------------------CchhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNL-------------------DNASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+.+++.|...|. +++++++. ..+.+...+.+.++.+ .-.+..+.
T Consensus 135 ~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~v~v~~~~ 211 (376)
T PRK08762 135 EARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP--DVQVEAVQ 211 (376)
T ss_pred cCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC--CCEEEEEe
Confidence 46899998 68899999999999997 67777765 2344444455554422 12333444
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
..+. .+.+..+++ ++|+||++..- ...-..+-++|.+.++ .+|+.+....+|
T Consensus 212 ~~~~-~~~~~~~~~--~~D~Vv~~~d~-----------------~~~r~~ln~~~~~~~i-p~i~~~~~g~~g 263 (376)
T PRK08762 212 ERVT-SDNVEALLQ--DVDVVVDGADN-----------------FPTRYLLNDACVKLGK-PLVYGAVFRFEG 263 (376)
T ss_pred ccCC-hHHHHHHHh--CCCEEEECCCC-----------------HHHHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 4443 345667777 58999999631 1112245677888876 688877655443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0064 Score=54.92 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=74.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.+||.|+|| |.+|+.++..|+..| .++.+++++........-.+.+..........+ .+ ..+++ .++ ++|
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~----~~d~~-~l~--~AD 75 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LG----TNNYE-DIK--DSD 75 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEE-Ee----CCCHH-HhC--CCC
Confidence 368999996 999999999999998 788899987655432111111111100111111 11 12344 455 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||.+||..... .....+.+..|..-...+++.+.+...+ .+|++|.
T Consensus 76 iVVitag~~~~~--g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 76 VVVITAGVQRKE--EMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999865421 2234567778888888888888887544 4666655
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=50.97 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=33.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA 42 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~ 42 (347)
||+|.|+| .|-+|+.+++.|+++||+|++.+|++.+.+..
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~ 40 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL 40 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhh
Confidence 58999999 79999999999999999999999887665443
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0074 Score=50.47 Aligned_cols=111 Identities=20% Similarity=0.288 Sum_probs=67.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc---------------------hhHHHHHHHHHhhccCCCCeEE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN---------------------ASEIAVAKVKELAGYQGNNMTF 59 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 59 (347)
..+|+|.|+.| +|+++++.|...|. ++++++...- +.+...+.+.++.+ .-+++.
T Consensus 19 ~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp--~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNP--NVKLSI 95 (198)
T ss_pred hCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCC--CCEEEE
Confidence 46899999666 99999999999995 4666653311 11222333444422 223444
Q ss_pred EecCCCC-HHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 60 HKLDLRD-KAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 60 ~~~Dl~d-~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
+..++.+ .+.....+. .+|+||.+.. +......+-+.|++.++ .+|+.++.+.||.
T Consensus 96 ~~~~~~~~~~~~~~~~~--~~dvVi~~~d-----------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G~ 152 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQ--KFTLVIATEE-----------------NYERTAKVNDVCRKHHI-PFISCATYGLIGY 152 (198)
T ss_pred EecccccchhhHHHHHh--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEeecCEEE
Confidence 4444432 334556666 5899997732 12223346678888876 7888888777664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0083 Score=54.67 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=76.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|+ |.+|+.++..|+.+|. ++.+++..........-.+.+..... ....+... .|. + .++ ++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~-~~~~i~~~--~dy---~-~~~--daD 107 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFL-PRTKILAS--TDY---A-VTA--GSD 107 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcC-CCCEEEeC--CCH---H-HhC--CCC
Confidence 59999995 9999999999998874 78899887765544444444332111 12222221 122 2 255 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||-+||.... ......+.+..|+.-.+.+.+..++.+.+ .+|.+|.
T Consensus 108 iVVitAG~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 108 LCIVTAGARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred EEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999997532 12345677888999999999998887543 5666654
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0028 Score=54.87 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=69.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||+|||+= |+.|++.|.++|+ |++..-.+-.... .. . .........+-+.+.+++.+++++.+++.|
T Consensus 1 m~ILvlgGTtE-~r~la~~L~~~g~-v~~sv~t~~g~~~-~~---~----~~~~~~v~~G~lg~~~~l~~~l~~~~i~~v 70 (249)
T PF02571_consen 1 MKILVLGGTTE-GRKLAERLAEAGY-VIVSVATSYGGEL-LK---P----ELPGLEVRVGRLGDEEGLAEFLRENGIDAV 70 (249)
T ss_pred CEEEEEechHH-HHHHHHHHHhcCC-EEEEEEhhhhHhh-hc---c----ccCCceEEECCCCCHHHHHHHHHhCCCcEE
Confidence 79999999987 9999999999998 5532211211111 00 0 113556777877799999999998899999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeE
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNL 124 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~i 124 (347)
|+..-+.. ...+.++.++|++.+++-+
T Consensus 71 IDATHPfA---------------~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 71 IDATHPFA---------------AEISQNAIEACRELGIPYL 97 (249)
T ss_pred EECCCchH---------------HHHHHHHHHHHhhcCcceE
Confidence 99975431 2346688999999987633
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0098 Score=53.71 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=73.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+||.|+| .|.+|+.++..|+..|. ++++++.+++......-.+.+..........+... .| + +.++ ++|+
T Consensus 7 ~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d---~-~~l~--~aDi 77 (321)
T PTZ00082 7 RKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NN---Y-EDIA--GSDV 77 (321)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CC---H-HHhC--CCCE
Confidence 5899999 69999999999999995 88899987765422111111111111112223221 22 3 2455 6999
Q ss_pred EEEccccccCCcc---ccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 82 VIHFAGLKAVGES---VQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~~---~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
||.+|+....... +....+.+..|+.-.+.+++.+.+...+ .+|.+|.
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999997542111 0133456677888888888888887644 6776665
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00098 Score=61.00 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLD 36 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~ 36 (347)
|+++|+|+||||++|+.|++.|++.. .++.++.++.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~ 38 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE 38 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence 45899999999999999999999875 4887774443
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=56.26 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=77.4
Q ss_pred EEEEcCCCcccHHHHHHHHhCC----CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGG----YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|.|+||+|.+|..++..|+..| .++.++++...+.+.....+.+..... ....+.. .+++.+.++ ++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~-----~~d~~~~~~--~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSI-----TDDPYEAFK--DAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEE-----CCchHHHhC--CCC
Confidence 5799999999999999999998 799999988776665555555443221 1112211 222455666 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||.+++..... ..........|+...+.+++.+++.... .+|.+|
T Consensus 73 iVv~t~~~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 73 VVIITAGVGRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEEECCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999875432 2233456667898899999988877533 555554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=60.48 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=58.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEE-ecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFH-KLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+|+|+||||++|..+++.|++. ++++..+ .+.+...+...+..+ .+... ..++.+. +..++.+ ++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~--------~l~~~~~~~~~~~-~~~~~~~--~~ 69 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHP--------HLRGLVDLNLEPI-DEEEIAE--DA 69 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCc--------cccccCCceeecC-CHHHhhc--CC
Confidence 58999999999999999999987 6788744 433322211111111 11110 1111111 1233444 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccccc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAY 133 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~y 133 (347)
|+||.+.+-. ....++..+.+.|+ ++|=.|+..-+
T Consensus 70 DvVf~alP~~------------------~s~~~~~~~~~~G~-~VIDlS~~fR~ 104 (346)
T TIGR01850 70 DVVFLALPHG------------------VSAELAPELLAAGV-KVIDLSADFRL 104 (346)
T ss_pred CEEEECCCch------------------HHHHHHHHHHhCCC-EEEeCChhhhc
Confidence 9999987421 23356666666664 89888887643
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0091 Score=48.84 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=65.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC------------------chhHHHHHHHHHhhccCCCCeEEEecCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD------------------NASEIAVAKVKELAGYQGNNMTFHKLDL 64 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 64 (347)
+|+|.| .|.+|+.+++.|.+.|. ++++++... .+.+...+.+.++.+ ..+++.+...+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp--~v~i~~~~~~~ 77 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINP--FVKIEAINIKI 77 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCC--CCEEEEEEeec
Confidence 589999 69999999999999997 477776654 122222333333322 22344454444
Q ss_pred CCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccC
Q 040584 65 RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYG 134 (347)
Q Consensus 65 ~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg 134 (347)
.. +.+.++++ ++|+||.+.. |...-..+.+.+.+. ++ .+|+.+...-||
T Consensus 78 ~~-~~~~~~l~--~~DlVi~~~d-----------------~~~~r~~i~~~~~~~~~i-p~i~~~~~~~~~ 127 (174)
T cd01487 78 DE-NNLEGLFG--DCDIVVEAFD-----------------NAETKAMLAESLLGNKNK-PVVCASGMAGFG 127 (174)
T ss_pred Ch-hhHHHHhc--CCCEEEECCC-----------------CHHHHHHHHHHHHHHCCC-CEEEEehhhccC
Confidence 43 45667777 5899999942 222223466666665 55 577665544444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0066 Score=55.85 Aligned_cols=115 Identities=14% Similarity=0.061 Sum_probs=73.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-----eEEE--E--eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-----KTVV--V--DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-----~v~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
||.|+||+|.+|.+++..|+..|. ++.+ + ++..+..+...-.+.+.......++.+... + .+.+
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~---~----y~~~ 118 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID---P----YEVF 118 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC---C----HHHh
Confidence 799999999999999999998863 2333 3 555555443333333322001112222111 2 2345
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-C-CeEEEecc
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-C-KNLVFSSS 129 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~-~~iv~~SS 129 (347)
+ ++|+||.+||.... ..+...+.++.|+.-.+.+.+...++. . ..+|.+|.
T Consensus 119 k--daDIVVitAG~prk--pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 119 E--DADWALLIGAKPRG--PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred C--CCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 5 59999999997532 234556788999999999999988843 3 36666664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=50.78 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=66.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCch--------------------hHHHHHHHHHhhccCCCCeEEE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNA--------------------SEIAVAKVKELAGYQGNNMTFH 60 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (347)
..+|+|.| .|.+|+++++.|...|. ++++++...-. .....+.+..+.+ .-.+..+
T Consensus 27 ~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np--~v~v~~~ 103 (231)
T PRK08328 27 KAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS--DIKIETF 103 (231)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC--CCEEEEE
Confidence 46899999 88899999999999995 45566532211 0011112222211 2233444
Q ss_pred ecCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 61 ~~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
...+. .+.+.++++ ++|+||.+.. |...-..+-++|++.++ .+|+.++...||.
T Consensus 104 ~~~~~-~~~~~~~l~--~~D~Vid~~d-----------------~~~~r~~l~~~~~~~~i-p~i~g~~~g~~G~ 157 (231)
T PRK08328 104 VGRLS-EENIDEVLK--GVDVIVDCLD-----------------NFETRYLLDDYAHKKGI-PLVHGAVEGTYGQ 157 (231)
T ss_pred eccCC-HHHHHHHHh--cCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEeeccCEEE
Confidence 44443 445666777 5899998853 22222234567888876 6888888777664
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0093 Score=49.83 Aligned_cols=108 Identities=19% Similarity=0.346 Sum_probs=65.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCc-------------------hhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDN-------------------ASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.|+.| +|+++++.|...|.. +++++...- +.+...+.+.++.+ .-.++.+.
T Consensus 21 ~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp--~v~i~~~~ 97 (197)
T cd01492 21 SARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP--RVKVSVDT 97 (197)
T ss_pred hCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC--CCEEEEEe
Confidence 46899999655 999999999999964 556553311 12223344444432 12344444
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
..+.+ ...+.+. ++|+||.+.. |...-..+-+.|++.++ .+|+.++.+.||
T Consensus 98 ~~~~~--~~~~~~~--~~dvVi~~~~-----------------~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G 148 (197)
T cd01492 98 DDISE--KPEEFFS--QFDVVVATEL-----------------SRAELVKINELCRKLGV-KFYATGVHGLFG 148 (197)
T ss_pred cCccc--cHHHHHh--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEecCCEE
Confidence 44432 2345566 5899997742 12223345678888877 688888877665
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0021 Score=57.22 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||+||.|.||+|+.|..|++.|+.+ ..++..+..+..+.+...+..+++.+. +. .....-|.+ ++... ++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~----~~-l~~~~~~~~---~~~~~-~~ 71 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGL----VD-LPFQTIDPE---KIELD-EC 71 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccc----cc-cccccCChh---hhhcc-cC
Confidence 7899999999999999999999998 467766654433333333333222110 00 111111222 22221 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATA 132 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~ 132 (347)
|+||.+-.-. ....++....+.++ ++|=+|...=
T Consensus 72 DvvFlalPhg------------------~s~~~v~~l~~~g~-~VIDLSadfR 105 (349)
T COG0002 72 DVVFLALPHG------------------VSAELVPELLEAGC-KVIDLSADFR 105 (349)
T ss_pred CEEEEecCch------------------hHHHHHHHHHhCCC-eEEECCcccc
Confidence 9999885311 12245555555566 5888887653
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.011 Score=54.20 Aligned_cols=109 Identities=19% Similarity=0.140 Sum_probs=68.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
+.+|+|.| .|.+|+.+++.|...|. ++++++... .+.+...+.+.++.+ .-+++.+.
T Consensus 28 ~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np--~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP--DVKVTVSV 104 (355)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC--CcEEEEEE
Confidence 46899999 68999999999999986 445554432 223334445555432 22344444
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
..+. .+...++++ ++|+||.+.. |...-..+-++|.+.++ .+|+.++.+.+|
T Consensus 105 ~~i~-~~~~~~~~~--~~DvVvd~~d-----------------~~~~r~~~n~~c~~~~i-p~v~~~~~g~~g 156 (355)
T PRK05597 105 RRLT-WSNALDELR--DADVILDGSD-----------------NFDTRHLASWAAARLGI-PHVWASILGFDA 156 (355)
T ss_pred eecC-HHHHHHHHh--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEEecCeE
Confidence 5554 345566777 5899999963 22222235567888776 688877655544
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.015 Score=49.25 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=66.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCC------------------chhHHHHHHHHHhhccCCCCeEEEecC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLD------------------NASEIAVAKVKELAGYQGNNMTFHKLD 63 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (347)
.+|+|.| .|.+|+.+++.|.+.|.. +++++... .+.+...+.+..+.+ ..+++.+...
T Consensus 29 ~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp--~v~v~~~~~~ 105 (212)
T PRK08644 29 AKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINP--FVEIEAHNEK 105 (212)
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCC--CCEEEEEeee
Confidence 5899999 799999999999999964 66666541 122223333333322 2244445545
Q ss_pred CCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccC
Q 040584 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYG 134 (347)
Q Consensus 64 l~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg 134 (347)
+.+ +.+.++++ ++|+||.+.. |...-..+.+.|.+. ++ .+|+.+...-|+
T Consensus 106 i~~-~~~~~~~~--~~DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~-p~I~~~~~~~~~ 156 (212)
T PRK08644 106 IDE-DNIEELFK--DCDIVVEAFD-----------------NAETKAMLVETVLEHPGK-KLVAASGMAGYG 156 (212)
T ss_pred cCH-HHHHHHHc--CCCEEEECCC-----------------CHHHHHHHHHHHHHhCCC-CEEEeehhhccC
Confidence 543 45566777 5899999842 223333566777776 65 677776554444
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0095 Score=55.76 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=71.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhC---C--CeE--EEEeCC--CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG---G--YKT--VVVDNL--DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~---g--~~v--~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
+|+||||+|.||.+|+.++++- | -.| .+++.. ........-.+.+........+.+.. | + .+.+
T Consensus 125 ~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~-~--~----~ea~ 197 (452)
T cd05295 125 QVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT-D--L----DVAF 197 (452)
T ss_pred EEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE-C--C----HHHh
Confidence 7999999999999999999983 3 334 455552 22222222222222100011233321 1 1 3556
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC--CeEEEecc
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC--KNLVFSSS 129 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~--~~iv~~SS 129 (347)
+ ++|+||-+||.... ......+..+.|+.-...+.++..+... .+++.+.|
T Consensus 198 ~--daDvvIitag~prk--~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 198 K--DAHVIVLLDDFLIK--EGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred C--CCCEEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 6 69999999997532 2334567888899999999999888754 46776665
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0054 Score=54.97 Aligned_cols=116 Identities=20% Similarity=0.178 Sum_probs=71.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|+|.|.|+ |.+|..++..|+.+|+ +|++++............+.+.......... +.. ..++.. +. ++|+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~-i~~----t~d~~~-~~--~aDi 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTK-VTG----TNNYAD-TA--NSDI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcE-EEe----cCCHHH-hC--CCCE
Confidence 68999995 9999999999999886 8999998655433111111110000000111 111 112333 44 5899
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
||-++|.... ......+.+..|+.-...+++...+.... .+|.+|.
T Consensus 73 VIitag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 73 VVITAGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEcCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999996432 12334567778999999999988876533 5666664
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=58.85 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=55.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEE---EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTV---VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+|.||||++|..|++.|.+++|.+. .+.+......... + .+......|+. . ..+. ++|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-----~-----~~~~~~~~~~~-~----~~~~--~~D 63 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-----F-----KGKELEVNEAK-I----ESFE--GID 63 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-----e-----CCeeEEEEeCC-h----HHhc--CCC
Confidence 589999999999999999999888754 3334433221110 0 12234444553 1 2234 599
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
+||.+++... +..++..+.+.|+ ++|=.|+..
T Consensus 64 ~v~~a~g~~~------------------s~~~a~~~~~~G~-~VID~ss~~ 95 (339)
T TIGR01296 64 IALFSAGGSV------------------SKEFAPKAAKCGA-IVIDNTSAF 95 (339)
T ss_pred EEEECCCHHH------------------HHHHHHHHHHCCC-EEEECCHHH
Confidence 9999987421 2245555555666 566666644
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.021 Score=44.97 Aligned_cols=106 Identities=23% Similarity=0.295 Sum_probs=65.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEecC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHKLD 63 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (347)
+|+|.| .|.+|+.+++.|.+.|. ++++++... .+.+...+.+.++.+ .-+++.+..+
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p--~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP--GVNVTAVPEG 77 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC--CcEEEEEeee
Confidence 589999 59999999999999997 566665431 112222334444322 2234445555
Q ss_pred CCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccccc
Q 040584 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAY 133 (347)
Q Consensus 64 l~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~y 133 (347)
+.+.. ....+. ++|+||.+.. |......+.++|++.++ .+|..++...+
T Consensus 78 ~~~~~-~~~~~~--~~diVi~~~d-----------------~~~~~~~l~~~~~~~~i-~~i~~~~~g~~ 126 (143)
T cd01483 78 ISEDN-LDDFLD--GVDLVIDAID-----------------NIAVRRALNRACKELGI-PVIDAGGLGLG 126 (143)
T ss_pred cChhh-HHHHhc--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEcCCCcE
Confidence 44332 355566 5899999864 22233457788888876 67777776543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=53.55 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=29.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
||++.|.| +|-||+.|+.+|.+.||+|+...|+.++
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChh
Confidence 46677766 9999999999999999999888555544
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0062 Score=57.87 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=50.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+|++| +|...++.|++.|++|.+.++.........+.+... ++.+..+. +... .+.. ++|+
T Consensus 5 ~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~------g~~~~~~~--~~~~---~~~~-~~d~ 71 (447)
T PRK02472 5 NKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEE------GIKVICGS--HPLE---LLDE-DFDL 71 (447)
T ss_pred CCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhc------CCEEEeCC--CCHH---HhcC-cCCE
Confidence 37899999988 999999999999999999987654332222333221 34444332 1221 1221 3899
Q ss_pred EEEcccccc
Q 040584 82 VIHFAGLKA 90 (347)
Q Consensus 82 vih~a~~~~ 90 (347)
||.++|+..
T Consensus 72 vV~s~gi~~ 80 (447)
T PRK02472 72 MVKNPGIPY 80 (447)
T ss_pred EEECCCCCC
Confidence 999998754
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.026 Score=48.93 Aligned_cols=109 Identities=22% Similarity=0.184 Sum_probs=66.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc-------------------hhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN-------------------ASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.|+ |.+|+.+++.|+..|. ++++++...- +.+...+.+.++.+ .-+++.+.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp--~v~i~~~~ 108 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP--HIAIETIN 108 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC--CCEEEEEe
Confidence 368999996 9999999999999985 4555432211 12222333444322 22344455
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
..+. .+.+.+++. ++|+||.+.. |...-..+-++|++.++ .+|+.++...+|
T Consensus 109 ~~i~-~~~~~~~~~--~~DiVi~~~D-----------------~~~~r~~ln~~~~~~~i-p~v~~~~~g~~G 160 (245)
T PRK05690 109 ARLD-DDELAALIA--GHDLVLDCTD-----------------NVATRNQLNRACFAAKK-PLVSGAAIRMEG 160 (245)
T ss_pred ccCC-HHHHHHHHh--cCCEEEecCC-----------------CHHHHHHHHHHHHHhCC-EEEEeeeccCCc
Confidence 5444 445667777 5899999963 22222346677888775 677766554443
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.016 Score=53.33 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=68.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+.+++.|...|. ++++++... .+.+...+.+.++.+ .-+++.+.
T Consensus 41 ~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np--~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP--DIRVNALR 117 (370)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC--CCeeEEee
Confidence 46899999 78899999999999995 666665441 122223334444422 22344555
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
..+. .+...++++ ++|+||.|.. |...-..+-++|.+.++ .+|+.+...-+|
T Consensus 118 ~~i~-~~~~~~~~~--~~DlVid~~D-----------------n~~~r~~in~~~~~~~i-P~v~~~~~g~~G 169 (370)
T PRK05600 118 ERLT-AENAVELLN--GVDLVLDGSD-----------------SFATKFLVADAAEITGT-PLVWGTVLRFHG 169 (370)
T ss_pred eecC-HHHHHHHHh--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEEecCEE
Confidence 4454 445667787 5899999963 33333345567777776 577777655444
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=51.09 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=49.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.++++|+|+ |.+|..+++.|.+.| ++|++++|+........+.+.. . .+..+..+. .++++ ++|
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~--~~~~~~~~~---~~~~~--~~D 83 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------L--GIAIAYLDL---EELLA--EAD 83 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------c--ccceeecch---hhccc--cCC
Confidence 378999996 999999999999996 8899998876554433333211 0 011222332 33355 599
Q ss_pred EEEEcccccc
Q 040584 81 AVIHFAGLKA 90 (347)
Q Consensus 81 ~vih~a~~~~ 90 (347)
+||.+.....
T Consensus 84 vvi~~~~~~~ 93 (155)
T cd01065 84 LIINTTPVGM 93 (155)
T ss_pred EEEeCcCCCC
Confidence 9999986543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0034 Score=54.65 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=60.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
.||+++| +|=+|+.++-.+++.|.+|++++|-......... -..+..|+.|.+.+.++++..++|.|
T Consensus 13 ~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APAmqVA------------hrs~Vi~MlD~~al~avv~rekPd~I 79 (394)
T COG0027 13 TKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVA------------HRSYVIDMLDGDALRAVVEREKPDYI 79 (394)
T ss_pred eEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChhhhhh------------hheeeeeccCHHHHHHHHHhhCCCee
Confidence 5799999 9999999999999999999999998776543221 12456799999999999998889999
Q ss_pred EEcccc
Q 040584 83 IHFAGL 88 (347)
Q Consensus 83 ih~a~~ 88 (347)
|--.-.
T Consensus 80 VpEiEA 85 (394)
T COG0027 80 VPEIEA 85 (394)
T ss_pred eehhhh
Confidence 876543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.029 Score=48.02 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=63.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+++++.|.+.|. ++++++... .+.+...+.+.++.+ .-+++.+.
T Consensus 11 ~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP--~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP--ECEVDAVE 87 (231)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC--CcEEEEee
Confidence 46899999 88999999999999985 555554322 112222333333322 12333344
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
..+. .+....++.. ++|+||.+.. |...-..+.++|++.++ .+|...+++
T Consensus 88 ~~i~-~~~~~~l~~~-~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~i-p~I~s~g~g 137 (231)
T cd00755 88 EFLT-PDNSEDLLGG-DPDFVVDAID-----------------SIRAKVALIAYCRKRKI-PVISSMGAG 137 (231)
T ss_pred eecC-HhHHHHHhcC-CCCEEEEcCC-----------------CHHHHHHHHHHHHHhCC-CEEEEeCCc
Confidence 3333 3455566643 5899999853 22233457788888876 566554443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.021 Score=51.07 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=76.6
Q ss_pred EEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|.|.|+ |.+|+.++..|+..| .++.++++...........+.+..... ........ .| + +.++ ++|+|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~--~~---~-~~l~--~aDiV 70 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-ATGTIVRG--GD---Y-ADAA--DADIV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-CCCeEEEC--CC---H-HHhC--CCCEE
Confidence 468895 889999999999998 789999988776655555555443211 12222221 22 2 2455 69999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|.+||.... ...+..+.+..|+...+.+.+..++...+ .+|.+|.
T Consensus 71 Iitag~p~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 71 VITAGAPRK--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred EEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 999996432 22344677788999999999998887643 5665554
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0032 Score=56.03 Aligned_cols=41 Identities=34% Similarity=0.495 Sum_probs=35.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA 44 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (347)
++|.|+| +|.+|+.++..|++.|++|++.++++...+...+
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 44 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKE 44 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 6899999 6999999999999999999999988766554443
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0034 Score=57.09 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=24.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK 28 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~ 28 (347)
.++|+|.||||++|..|++.|.+++|.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 478999999999999999999998874
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.01 Score=52.25 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=67.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
++++.|+|+.| ||+--++....-|++|++++++..+.+++.+.+ +.+.+..-..|++.++++.+. -|.
T Consensus 182 G~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---------GAd~fv~~~~d~d~~~~~~~~--~dg 249 (360)
T KOG0023|consen 182 GKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---------GADVFVDSTEDPDIMKAIMKT--TDG 249 (360)
T ss_pred CcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---------CcceeEEecCCHHHHHHHHHh--hcC
Confidence 47899999999 999999988889999999999886666555443 334444334488888888774 566
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
++|++.-.. ... ..-+++.++..| ++|+++-.
T Consensus 250 ~~~~v~~~a----~~~-----------~~~~~~~lk~~G--t~V~vg~p 281 (360)
T KOG0023|consen 250 GIDTVSNLA----EHA-----------LEPLLGLLKVNG--TLVLVGLP 281 (360)
T ss_pred cceeeeecc----ccc-----------hHHHHHHhhcCC--EEEEEeCc
Confidence 666653210 000 113556666554 89888754
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.025 Score=48.78 Aligned_cols=108 Identities=20% Similarity=0.221 Sum_probs=65.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc-------------------hhHHHHHHHHHhhccCCCCeEEEec
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN-------------------ASEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
.+|+|.| .|.+|+.+++.|...|. ++++++...- +.+...+.+.++.+ .-.++.+..
T Consensus 25 ~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp--~v~i~~~~~ 101 (240)
T TIGR02355 25 SRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINP--HIAINPINA 101 (240)
T ss_pred CcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCC--CcEEEEEec
Confidence 5899999 88999999999999985 4444443221 22223334444322 123334433
Q ss_pred CCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 63 Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
.+ +.+.+.+++. ++|+||.+.. |...-..+-++|.+.++ .+|+.++...+|
T Consensus 102 ~i-~~~~~~~~~~--~~DlVvd~~D-----------------~~~~r~~ln~~~~~~~i-p~v~~~~~g~~G 152 (240)
T TIGR02355 102 KL-DDAELAALIA--EHDIVVDCTD-----------------NVEVRNQLNRQCFAAKV-PLVSGAAIRMEG 152 (240)
T ss_pred cC-CHHHHHHHhh--cCCEEEEcCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEecccEe
Confidence 33 3455677777 5899999963 22223345677888876 688776655544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.038 Score=48.29 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=63.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCch-------------------hHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNA-------------------SEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+++++.|++.| -++++++...-. .+...+.+.++ .+.+....
T Consensus 30 ~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I----NP~~~V~~ 104 (268)
T PRK15116 30 DAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI----NPECRVTV 104 (268)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH----CCCcEEEE
Confidence 36899999 8899999999999999 456665533111 01112222222 23333322
Q ss_pred c-CCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccc
Q 040584 62 L-DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATA 132 (347)
Q Consensus 62 ~-Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~ 132 (347)
. +.-+++...+++.. ++|+||.+... +..-..|.++|++.++ .+|..+.++.
T Consensus 105 i~~~i~~e~~~~ll~~-~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~i-p~I~~gGag~ 157 (268)
T PRK15116 105 VDDFITPDNVAEYMSA-GFSYVIDAIDS-----------------VRPKAALIAYCRRNKI-PLVTTGGAGG 157 (268)
T ss_pred EecccChhhHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC-CEEEECCccc
Confidence 2 22235556666643 58999998642 2223357888888876 5776655543
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0057 Score=54.63 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEe
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVD 33 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~ 33 (347)
|+.+|.|.||||++|..|++.|.++. .++..+.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~ 34 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIP 34 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 88999999999999999999999885 3555554
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0097 Score=60.56 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=104.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+..+|+||-|..|-.|++-|.++|.+-.++ +|+.-+.--....+..+.. .+-++.+-..|++....-..+++..
T Consensus 1769 ksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~-~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1769 KSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRR-RGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred ceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHh-cCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 678999999999999999999999876654 4544332211222223321 1223344445666666656665532
Q ss_pred CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
.+--|||+|+.......+ +++.+.-+.-..+|.+|=+..++. ..+-||.+||++. |. .-...+
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-GR----------GN~GQt 1916 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-GR----------GNAGQT 1916 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-cC----------CCCccc
Confidence 477899999876543332 233333333566677776666654 2568999999875 21 122346
Q ss_pred chhhhHHHHHHHHHHHhhhcCCceEEEeeccc
Q 040584 152 PYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~ 183 (347)
-||.+-.++|+++.....+ |++.+.+--|.
T Consensus 1917 NYG~aNS~MERiceqRr~~--GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1917 NYGLANSAMERICEQRRHE--GFPGTAIQWGA 1946 (2376)
T ss_pred ccchhhHHHHHHHHHhhhc--CCCcceeeeec
Confidence 7999999999999765433 66666655443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.024 Score=50.65 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=73.4
Q ss_pred EEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEE
Q 040584 7 VIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIH 84 (347)
Q Consensus 7 ItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (347)
|.| .|.+|+.++..|+..+. ++.+++............+.+........+.+.. .|. +.++ ++|+||-
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~--daDivVi 70 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GDY----SDCK--DADLVVI 70 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CCH----HHHC--CCCEEEE
Confidence 456 59999999999998874 7889988766554444444333211112233322 222 3455 5999999
Q ss_pred ccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 85 FAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
.||.... ...+..+.++.|+.-.+.+.+.+++++.. .+|.+|.
T Consensus 71 tag~~rk--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 71 TAGAPQK--PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 9997532 12345678889999999999998887643 5666664
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.037 Score=49.56 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=68.9
Q ss_pred EEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
|.|+|| |.+|..++..|+.+|. +|+++++++.........+.+..........+... .| ++ .++ ++|+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t--~d---~~-~l~--dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGT--ND---YE-DIA--GSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEc--CC---HH-HhC--CCCEEE
Confidence 578997 9999999999998876 99999988664432221122211111111222111 12 23 355 699999
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
.+++..... .....+.+..|+.-.+.+++.+.+...+ .+|.+|.
T Consensus 72 it~g~p~~~--~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 72 ITAGIPRKP--GMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred EecCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999864321 1233345566888888888888876543 4455553
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=53.17 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=32.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
.+|+|+||+|.+|..+++.+...|.+|+++.+++++.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~ 176 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV 176 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5899999999999999999999999999887765443
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=57.93 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=56.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
..+++|.| .|-+|+++++.|.++|++|++++++++..+. +.+ .+...+.+|.+|++.++++--+ ++|.
T Consensus 417 ~~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~----~~~------~g~~~i~GD~~~~~~L~~a~i~-~a~~ 484 (558)
T PRK10669 417 CNHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDE----LRE------RGIRAVLGNAANEEIMQLAHLD-CARW 484 (558)
T ss_pred CCCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHH----HHH------CCCeEEEcCCCCHHHHHhcCcc-ccCE
Confidence 45789999 8999999999999999999999876554332 222 2678899999999988876433 5887
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
|+-+.
T Consensus 485 viv~~ 489 (558)
T PRK10669 485 LLLTI 489 (558)
T ss_pred EEEEc
Confidence 77664
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.014 Score=51.31 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC---CeEEEEeCCCchh
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG---YKTVVVDNLDNAS 39 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g---~~v~~~~r~~~~~ 39 (347)
|||+|.|+| +|-+|+.++..|.+.| ++|.+++|++...
T Consensus 1 ~mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~ 41 (267)
T PRK11880 1 MMKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSPEKR 41 (267)
T ss_pred CCCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCHHHH
Confidence 889999999 6999999999999998 7888988875543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0063 Score=51.00 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=31.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
+|+|+|+|. |-+|+++++.|.+.|++|++.+++...
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~ 63 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEA 63 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 478999995 799999999999999999988776443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.016 Score=54.47 Aligned_cols=39 Identities=33% Similarity=0.447 Sum_probs=34.6
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|+ |+|.|+| .|++|..++..|+++||+|+++++++.+.+
T Consensus 1 m~~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~~v~ 40 (415)
T PRK11064 1 MSFETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQHAVD 40 (415)
T ss_pred CCccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 54 7899998 899999999999999999999998766544
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0056 Score=54.20 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=50.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++++|+|+ |.+|+.+++.|.+.| .+|+++.|+..+.+...+.+... ..+.+ ++ +..+.+. .+|
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-----~~~~~---~~----~~~~~~~--~~D 187 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-----GKAEL---DL----ELQEELA--DFD 187 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-----cceee---cc----cchhccc--cCC
Confidence 468999995 999999999999999 78999999876655444443211 01111 11 1223444 589
Q ss_pred EEEEcccccc
Q 040584 81 AVIHFAGLKA 90 (347)
Q Consensus 81 ~vih~a~~~~ 90 (347)
+||++.....
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999987543
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.024 Score=50.72 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=49.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
+++++|+|++|.+|..+++.+...|.+|+++.++....+. +..+ ++..+ .|..+.+ .+.+.....+
T Consensus 145 g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~----~~~~------g~~~~-~~~~~~~~~~~~~~~~~~~~ 213 (325)
T cd08253 145 GETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAEL----VRQA------GADAV-FNYRAEDLADRILAATAGQG 213 (325)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHc------CCCEE-EeCCCcCHHHHHHHHcCCCc
Confidence 3689999999999999999999999999998876544332 2221 11111 2333322 2333333336
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|.|+++++
T Consensus 214 ~d~vi~~~~ 222 (325)
T cd08253 214 VDVIIEVLA 222 (325)
T ss_pred eEEEEECCc
Confidence 999999976
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.021 Score=47.12 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=28.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|+|.|.| .|++|..++-.|++.||+|++++.++...+
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~ 37 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEKVE 37 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHHHH
Confidence 7899998 999999999999999999999988765443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0056 Score=47.04 Aligned_cols=87 Identities=22% Similarity=0.150 Sum_probs=45.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhc----cCCCCeEEEecCCCCHH--HHHHHHc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAG----YQGNNMTFHKLDLRDKA--ALEVVFA 75 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~--~~~~~~~ 75 (347)
++|-|+| .|-+|.+|.+.|.+.||+|..+. |+..+.+.....+..... ..-...+.+...+.|.. .+.+.+.
T Consensus 11 l~I~iIG-aGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 11 LKIGIIG-AGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp -EEEEEC-TSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred cEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHHH
Confidence 6899999 59999999999999999998774 544333333322211000 00123444545445532 2222232
Q ss_pred cC----CCcEEEEcccccc
Q 040584 76 GT----KFDAVIHFAGLKA 90 (347)
Q Consensus 76 ~~----~~d~vih~a~~~~ 90 (347)
.. .=.+|+||+|...
T Consensus 90 ~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 90 QYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp CC--S-TT-EEEES-SS--
T ss_pred HhccCCCCcEEEECCCCCh
Confidence 21 2359999999654
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.018 Score=52.24 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=47.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC---HHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD---KAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~~~ 79 (347)
.+|||+||+|.+|+..++.+...|+.++++..++.+.+ . +.++ +...+ .|..+ .+.+.++..+.++
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~---~~~l------GAd~v-i~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-L---LKEL------GADHV-INYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-H---HHhc------CCCEE-EcCCcccHHHHHHHHcCCCCc
Confidence 68999999999999999999999977766655544333 2 2222 11111 12222 2233344443469
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+|+...|-
T Consensus 213 Dvv~D~vG~ 221 (326)
T COG0604 213 DVVLDTVGG 221 (326)
T ss_pred eEEEECCCH
Confidence 999999874
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0089 Score=49.19 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=34.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHH
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVK 47 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~ 47 (347)
+|.|.|| |.+|+.++..++..|++|+++++++...+...+.+.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~ 43 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE 43 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence 6899995 999999999999999999999998776655544444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0055 Score=54.79 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|.|+| .|.+|..+++.|.+.|++|++.+|++.+.+... . .++.. ..++.++++ .+|
T Consensus 1 ~~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~------~g~~~-------~~~~~e~~~--~~d 60 (296)
T PRK11559 1 MTMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI----A------AGAET-------ASTAKAVAE--QCD 60 (296)
T ss_pred CCceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH----H------CCCee-------cCCHHHHHh--cCC
Confidence 789999999 899999999999999999999988765433211 1 11111 122445555 589
Q ss_pred EEEEccc
Q 040584 81 AVIHFAG 87 (347)
Q Consensus 81 ~vih~a~ 87 (347)
+||-+..
T Consensus 61 ~vi~~vp 67 (296)
T PRK11559 61 VIITMLP 67 (296)
T ss_pred EEEEeCC
Confidence 9998863
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.016 Score=53.95 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=52.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH----HHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK----AALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~~~~ 77 (347)
+|+|||||++..+|..+++.|.+.|++|++++..+........... +...+...-.|. +.+.+++++.
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d--------~~~~~p~p~~d~~~~~~~L~~i~~~~ 75 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVD--------GFYTIPSPRWDPDAYIQALLSIVQRE 75 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhh--------heEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 4899999999999999999999999999999876543221111111 111121112233 3455666666
Q ss_pred CCcEEEEccc
Q 040584 78 KFDAVIHFAG 87 (347)
Q Consensus 78 ~~d~vih~a~ 87 (347)
++|+||-+..
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 8999998865
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.014 Score=51.43 Aligned_cols=73 Identities=14% Similarity=0.297 Sum_probs=49.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++|+|+ |.+|+.++..|++.|++|+++.|+..+.+...+.+... ...... ++.+ .... .+|+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~-----~~~~~~--~~~~-----~~~~--~~Di 181 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY-----GEIQAF--SMDE-----LPLH--RVDL 181 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc-----CceEEe--chhh-----hccc--CccE
Confidence 468999997 89999999999999999999998866655444433221 112222 1111 1122 5899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
||++.+..
T Consensus 182 vInatp~g 189 (270)
T TIGR00507 182 IINATSAG 189 (270)
T ss_pred EEECCCCC
Confidence 99998764
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.033 Score=47.45 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=66.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+++|+|+|||+= ++.|++.|...+..+++.+-....... .++ ... ...+-.-+.+.+.+++++.++|
T Consensus 1 ~~~~ilvlGGT~D-ar~la~~L~~~~~~~~~ss~t~~g~~l-~~~---------~~~-~~~~G~l~~e~l~~~l~e~~i~ 68 (257)
T COG2099 1 SMMRILLLGGTSD-ARALAKKLAAAPVDIILSSLTGYGAKL-AEQ---------IGP-VRVGGFLGAEGLAAFLREEGID 68 (257)
T ss_pred CCceEEEEeccHH-HHHHHHHhhccCccEEEEEcccccccc-hhc---------cCC-eeecCcCCHHHHHHHHHHcCCC
Confidence 6789999999987 999999999987444433222111110 111 011 2334455789999999988999
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEE
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLV 125 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv 125 (347)
.||...-+. -.+.+.|.+++|++.+++-+.
T Consensus 69 llIDATHPy---------------Aa~iS~Na~~aake~gipy~r 98 (257)
T COG2099 69 LLIDATHPY---------------AARISQNAARAAKETGIPYLR 98 (257)
T ss_pred EEEECCChH---------------HHHHHHHHHHHHHHhCCcEEE
Confidence 999986432 234577999999999986554
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.021 Score=52.07 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=47.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC--C-HHHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR--D-KAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d-~~~~~~~~~~~~ 78 (347)
.+|+|+||+|.+|..+++.+...|. +|+++.+++.+.+...+. + +...+ .|.. + .+.+.++.. .+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---l------Ga~~v-i~~~~~~~~~~i~~~~~-~g 224 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---L------GFDAA-INYKTDNVAERLRELCP-EG 224 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---c------CCcEE-EECCCCCHHHHHHHHCC-CC
Confidence 6899999999999999999999998 799887765443322221 1 12221 1222 2 123333332 36
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|+||+++|
T Consensus 225 vd~vid~~g 233 (345)
T cd08293 225 VDVYFDNVG 233 (345)
T ss_pred ceEEEECCC
Confidence 999999876
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.023 Score=51.33 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=32.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
+.+++|+||+|.+|..+++.+...|..|+++.+++..
T Consensus 163 ~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~ 199 (332)
T cd08259 163 GDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEK 199 (332)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 3689999999999999999999999999988876544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.02 Score=56.44 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=56.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
++|+|.| .|-+|+.+++.|.++|+++++++++++..+. +.+ .+...+.+|.+|++.++++=-+ ++|.|
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~----~~~------~g~~v~~GDat~~~~L~~agi~-~A~~v 468 (601)
T PRK03659 401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNL----MRK------YGYKVYYGDATQLELLRAAGAE-KAEAI 468 (601)
T ss_pred CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHH----HHh------CCCeEEEeeCCCHHHHHhcCCc-cCCEE
Confidence 5789999 8999999999999999999999877554332 222 2567899999999988876332 58888
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
|-+.
T Consensus 469 v~~~ 472 (601)
T PRK03659 469 VITC 472 (601)
T ss_pred EEEe
Confidence 8774
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0075 Score=56.91 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=32.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
|+|.|+||+|.+|..+++.|.+.|++|++++|++..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~ 36 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKK 36 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence 589999999999999999999999999999987544
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.052 Score=48.57 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=67.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEecC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHKLD 63 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (347)
+|+|.| .|.+|..+++.|+..|. .+++++... .+.+...+.+.++.+ .-.+..+..+
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp--~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNP--NVKIVAYHAN 77 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCC--CCeEEEEecc
Confidence 589999 59999999999999985 444544221 112222334444322 2345556667
Q ss_pred CCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 64 l~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
+.+.....+.++ ++|+||.+.. |...-..+-+.|...++ .+|..++.+.+|.
T Consensus 78 i~~~~~~~~f~~--~~DvVv~a~D-----------------n~~ar~~in~~c~~~~i-p~I~~gt~G~~G~ 129 (312)
T cd01489 78 IKDPDFNVEFFK--QFDLVFNALD-----------------NLAARRHVNKMCLAADV-PLIESGTTGFLGQ 129 (312)
T ss_pred CCCccchHHHHh--cCCEEEECCC-----------------CHHHHHHHHHHHHHCCC-CEEEEecCcceeE
Confidence 765433446666 5899998852 33333356677777776 6888887776653
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.11 Score=43.59 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=50.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCC---Cchh---------------HHHHHHHHHhhccCCCCeEEEec
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNL---DNAS---------------EIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~---~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
.++|+|.| .|.+|+.+++.|.+.|. +++++++. .+.. +...+.+..+.+ ...+..+..
T Consensus 21 ~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp--~~~i~~~~~ 97 (200)
T TIGR02354 21 QATVAICG-LGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP--YTEIEAYDE 97 (200)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC--CCEEEEeee
Confidence 46899999 58899999999999998 68887765 1111 111222222221 124445555
Q ss_pred CCCCHHHHHHHHccCCCcEEEEcc
Q 040584 63 DLRDKAALEVVFAGTKFDAVIHFA 86 (347)
Q Consensus 63 Dl~d~~~~~~~~~~~~~d~vih~a 86 (347)
++. .+.+.+++. ++|+||.+.
T Consensus 98 ~i~-~~~~~~~~~--~~DlVi~a~ 118 (200)
T TIGR02354 98 KIT-EENIDKFFK--DADIVCEAF 118 (200)
T ss_pred eCC-HhHHHHHhc--CCCEEEECC
Confidence 554 455677777 589999983
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0082 Score=53.01 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=30.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN 34 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r 34 (347)
+++|+|+|++|.+|+.++..|+++|..|+++.|
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 479999999999999999999999999988875
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.03 Score=51.00 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=32.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
.+|+|+||+|.+|..+++.+...|.+|+++.+++.+.+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~ 190 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVD 190 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 58999999999999999999999999998887655443
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.013 Score=52.06 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=48.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++|+| .|.+|+.+++.|...|++|++..|+....... ... +...+ +.+++.+++. +.|+
T Consensus 151 gk~v~IiG-~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~----~~~------g~~~~-----~~~~l~~~l~--~aDi 212 (287)
T TIGR02853 151 GSNVMVLG-FGRTGMTIARTFSALGARVFVGARSSADLARI----TEM------GLIPF-----PLNKLEEKVA--EIDI 212 (287)
T ss_pred CCEEEEEc-ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHC------CCeee-----cHHHHHHHhc--cCCE
Confidence 47899999 58899999999999999999999876433221 111 12221 2445667777 5899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||++..
T Consensus 213 Vint~P 218 (287)
T TIGR02853 213 VINTIP 218 (287)
T ss_pred EEECCC
Confidence 999863
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.024 Score=48.79 Aligned_cols=114 Identities=19% Similarity=0.165 Sum_probs=67.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEE---EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV---VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
-||.|.||.|.||+.|.-.|. ....|. +.+-...+. ....+.+. ...... ....-.++++++++ +.
T Consensus 29 ~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~G--VaaDlSHI----~T~s~V--~g~~g~~~L~~al~--~a 97 (345)
T KOG1494|consen 29 LKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPG--VAADLSHI----NTNSSV--VGFTGADGLENALK--GA 97 (345)
T ss_pred ceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCc--cccccccc----CCCCce--eccCChhHHHHHhc--CC
Confidence 489999999999999976555 444432 222211110 00001000 001111 11123568999999 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||--||.+.-+.- ..++.|.+|..-...|..++.++-.. .+.++|.
T Consensus 98 dvVvIPAGVPRKPGM--TRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 98 DVVVIPAGVPRKPGM--TRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred CEEEecCCCCCCCCC--cHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 999999997542221 23578999999999999988876322 4555554
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=47.98 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=43.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+|+++.+|..+++.|.++|.+|+++.|.. +++.+.+. .+|+
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------------------------~~l~~~l~--~aDi 90 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------------------------KNLKEHTK--QADI 90 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------------------------hhHHHHHh--hCCE
Confidence 47999999877889999999999999998887641 23445566 4899
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||.+.+.
T Consensus 91 VIsat~~ 97 (168)
T cd01080 91 VIVAVGK 97 (168)
T ss_pred EEEcCCC
Confidence 9998764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.016 Score=53.69 Aligned_cols=67 Identities=30% Similarity=0.370 Sum_probs=51.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|++|+|+|+ |.+|+.++..+.+.|++|++++..+....... --..+.+|..|.+.+.++++ .+|+
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~------------ad~~~~~~~~D~~~l~~~a~--~~dv 66 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV------------ADEVIVADYDDVAALRELAE--QCDV 66 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh------------CceEEecCCCCHHHHHHHHh--cCCE
Confidence 478999995 89999999999999999999987654322110 11355678899999999998 5888
Q ss_pred EE
Q 040584 82 VI 83 (347)
Q Consensus 82 vi 83 (347)
|.
T Consensus 67 it 68 (372)
T PRK06019 67 IT 68 (372)
T ss_pred EE
Confidence 74
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.015 Score=54.32 Aligned_cols=71 Identities=24% Similarity=0.390 Sum_probs=54.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+|+| +|.+|..+++.+.+.|++|++++..+....... .. ..+..|..|.+.+.++++..++|.|
T Consensus 13 ~~ilIiG-~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~----------ad--~~~~~~~~d~~~l~~~~~~~~id~v 79 (395)
T PRK09288 13 TRVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV----------AH--RSHVIDMLDGDALRAVIEREKPDYI 79 (395)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHh----------hh--heEECCCCCHHHHHHHHHHhCCCEE
Confidence 6899999 578999999999999999999887654322111 00 2456788899999988887679999
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
+-..
T Consensus 80 i~~~ 83 (395)
T PRK09288 80 VPEI 83 (395)
T ss_pred EEee
Confidence 8654
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.033 Score=50.37 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=61.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH---HHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV---VFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~~~~~~ 79 (347)
.+++|+|+++.+|..+++.+...|++|+++.++...... +... +... ..|..+.+.... .....++
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~----~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLER----AKEL------GADY-VIDYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHc------CCCe-EEecCChHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999988776543322 2111 1111 134444443333 3333368
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
|.++++++... ....++.++.. ++++.+|+..
T Consensus 237 d~~i~~~g~~~------------------~~~~~~~l~~~--G~~v~~~~~~ 268 (342)
T cd08266 237 DVVVEHVGAAT------------------WEKSLKSLARG--GRLVTCGATT 268 (342)
T ss_pred cEEEECCcHHH------------------HHHHHHHhhcC--CEEEEEecCC
Confidence 99999987311 11234444443 4899888754
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.018 Score=51.89 Aligned_cols=80 Identities=30% Similarity=0.245 Sum_probs=50.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHH----HhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVK----ELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
++|.|+| +|-+|+.++..|+..|++|++.++++.........+. .+... +.........++-..++++++. +
T Consensus 8 ~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~l~~av~--~ 83 (321)
T PRK07066 8 KTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQ-GLAPGASPARLRFVATIEACVA--D 83 (321)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCChhhHHhhceecCCHHHHhc--C
Confidence 6899999 7999999999999999999999988765544333222 11110 0000000011111224556776 6
Q ss_pred CcEEEEcc
Q 040584 79 FDAVIHFA 86 (347)
Q Consensus 79 ~d~vih~a 86 (347)
+|.||-+.
T Consensus 84 aDlViEav 91 (321)
T PRK07066 84 ADFIQESA 91 (321)
T ss_pred CCEEEECC
Confidence 99999986
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.017 Score=55.57 Aligned_cols=40 Identities=33% Similarity=0.416 Sum_probs=34.8
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
|.|+|.|+| +|.+|+.++..|++.|++|++.++++.+.+.
T Consensus 3 ~i~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~ 42 (495)
T PRK07531 3 MIMKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHPEAERI 42 (495)
T ss_pred CcCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 347899998 9999999999999999999999988766543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.019 Score=53.04 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=52.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
.+|+|+|+ |-+|...++.|...|.+|++++|+..+.+.....+ . ..+..+..+.+.+.+.+. ++|+|
T Consensus 168 ~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~-------g---~~v~~~~~~~~~l~~~l~--~aDvV 234 (370)
T TIGR00518 168 GDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF-------G---GRIHTRYSNAYEIEDAVK--RADLL 234 (370)
T ss_pred ceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc-------C---ceeEeccCCHHHHHHHHc--cCCEE
Confidence 46999985 99999999999999999999988755433222211 1 112334566778888887 58999
Q ss_pred EEcccc
Q 040584 83 IHFAGL 88 (347)
Q Consensus 83 ih~a~~ 88 (347)
|++++.
T Consensus 235 I~a~~~ 240 (370)
T TIGR00518 235 IGAVLI 240 (370)
T ss_pred EEcccc
Confidence 999854
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.038 Score=50.29 Aligned_cols=78 Identities=28% Similarity=0.230 Sum_probs=51.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHH--------HHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA--------KVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
|+|.|.| +|++|.-..-.|++.||+|++++..+.+-+.+.+ .+.++....... +-|+-..++++++
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~-----gRl~fTtd~~~a~ 74 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS-----GRLRFTTDYEEAV 74 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc-----CcEEEEcCHHHHH
Confidence 7899999 9999999999999999999999987766544321 111111100000 0022234466677
Q ss_pred ccCCCcEEEEcccc
Q 040584 75 AGTKFDAVIHFAGL 88 (347)
Q Consensus 75 ~~~~~d~vih~a~~ 88 (347)
+ ..|++|-+.|-
T Consensus 75 ~--~adv~fIavgT 86 (414)
T COG1004 75 K--DADVVFIAVGT 86 (414)
T ss_pred h--cCCEEEEEcCC
Confidence 6 58999998874
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.044 Score=49.33 Aligned_cols=72 Identities=24% Similarity=0.231 Sum_probs=52.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+|+. .+|...++.+...|.+|++++|++++.+...+. +...+. +-+|.+..+++-+ .+|.
T Consensus 167 G~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----------GAd~~i-~~~~~~~~~~~~~--~~d~ 232 (339)
T COG1064 167 GKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----------GADHVI-NSSDSDALEAVKE--IADA 232 (339)
T ss_pred CCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----------CCcEEE-EcCCchhhHHhHh--hCcE
Confidence 3689999966 999999999999999999999998876543322 222322 2235665555555 3899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
+|.+++
T Consensus 233 ii~tv~ 238 (339)
T COG1064 233 IIDTVG 238 (339)
T ss_pred EEECCC
Confidence 999987
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0098 Score=54.97 Aligned_cols=34 Identities=24% Similarity=0.545 Sum_probs=31.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
+++|.|.||.|.+|..+++.|.+.|++|++.+|+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4789999999999999999999999999999874
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=52.32 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK 28 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~ 28 (347)
+++|.|.||||-+|+.+++.|.+++..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~ 27 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFP 27 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCC
Confidence 478999999999999999999997643
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.029 Score=50.71 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=47.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~ 79 (347)
.+|+|+||+|.+|..+++.+...|.+|+++.+++.+.+. +.++ ++..+ .|..+. +.+.++.. .++
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~----l~~~------Ga~~v-i~~~~~~~~~~v~~~~~-~gv 212 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAW----LKEL------GFDAV-FNYKTVSLEEALKEAAP-DGI 212 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHc------CCCEE-EeCCCccHHHHHHHHCC-CCc
Confidence 589999999999999999999999999988876554332 2222 12221 122222 22333322 369
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|+|+++.|
T Consensus 213 d~vld~~g 220 (329)
T cd08294 213 DCYFDNVG 220 (329)
T ss_pred EEEEECCC
Confidence 99999876
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.018 Score=54.35 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=54.6
Q ss_pred CceEEEEcC----------------CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGG----------------VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGa----------------tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+++||||+| ||-.|.+|++.+..+|++|+++.-+-. .. ...++..+.. .
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~~------------~p~~v~~i~V--~ 320 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-LA------------DPQGVKVIHV--E 320 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-CC------------CCCCceEEEe--c
Confidence 478999975 799999999999999999998863211 10 1235555544 4
Q ss_pred CHHHHHHHHcc-CCCcEEEEccccccCCc
Q 040584 66 DKAALEVVFAG-TKFDAVIHFAGLKAVGE 93 (347)
Q Consensus 66 d~~~~~~~~~~-~~~d~vih~a~~~~~~~ 93 (347)
..+++.+++.. ...|++|++|++..+.+
T Consensus 321 ta~eM~~av~~~~~~Di~I~aAAVaDyrp 349 (475)
T PRK13982 321 SARQMLAAVEAALPADIAIFAAAVADWRV 349 (475)
T ss_pred CHHHHHHHHHhhCCCCEEEEeccccceee
Confidence 56666666643 34799999999876543
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0098 Score=53.54 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=59.8
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH-HHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA-ALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~ 78 (347)
|+++||+.| +||+.+.++..|.+++ .+|++..|.-...++..+ +..++.+..|+.+.+ .+++..+ .
T Consensus 1 ~~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~---------~~~~~av~ldv~~~~~~L~~~v~--~ 68 (445)
T KOG0172|consen 1 TKKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVK---------GINIKAVSLDVADEELALRKEVK--P 68 (445)
T ss_pred CCcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHHHHhc---------CCCccceEEEccchHHHHHhhhc--c
Confidence 678999999 9999999999999875 688887766544443332 345888999999988 8888887 5
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
.|.|+-+-..
T Consensus 69 ~D~viSLlP~ 78 (445)
T KOG0172|consen 69 LDLVISLLPY 78 (445)
T ss_pred cceeeeeccc
Confidence 8999988643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0073 Score=53.89 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=48.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+| .|.+|+.+++.|...|.+|++++|+...... ...+ +..++ +.+++.+.+. ++|+
T Consensus 152 g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~----~~~~------G~~~~-----~~~~l~~~l~--~aDi 213 (296)
T PRK08306 152 GSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHLAR----ITEM------GLSPF-----HLSELAEEVG--KIDI 213 (296)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHc------CCeee-----cHHHHHHHhC--CCCE
Confidence 47999999 5889999999999999999999987543221 1111 22222 2345667777 5899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||+++.
T Consensus 214 VI~t~p 219 (296)
T PRK08306 214 IFNTIP 219 (296)
T ss_pred EEECCC
Confidence 999863
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.019 Score=52.42 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=26.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~ 33 (347)
++|.|+|++|++|++|++.|.+.. .++..+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~ 32 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVV 32 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEE
Confidence 589999999999999999998876 6887664
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.023 Score=50.34 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=50.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
++|+|+| +|..|++++..|.+.|. +|++++|+..+.+.+.+.+.... +....... +++.+.+. .+|+
T Consensus 128 k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~----~~~~~~~~-----~~~~~~~~--~aDi 195 (284)
T PRK12549 128 ERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF----PAARATAG-----SDLAAALA--AADG 195 (284)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC----CCeEEEec-----cchHhhhC--CCCE
Confidence 6899999 67799999999999997 78999998777666555543321 12222221 22334455 5899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||++..
T Consensus 196 VInaTp 201 (284)
T PRK12549 196 LVHATP 201 (284)
T ss_pred EEECCc
Confidence 999954
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.026 Score=48.48 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEE-EEeCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTV-VVDNLDN 37 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~-~~~r~~~ 37 (347)
|+++|.|.|++|-.|+.+++.+.+.. +++. ++.|.++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~ 39 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS 39 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 68999999999999999999999875 6665 5666654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.027 Score=50.79 Aligned_cols=41 Identities=29% Similarity=0.462 Sum_probs=34.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA 44 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (347)
++|.|+| .|.+|..++..|++.|++|++++++....+...+
T Consensus 5 ~~I~vIG-aG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIG-AGTMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 6899998 6999999999999999999999987766554443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=54.61 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=33.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
|+|.|+| .|++|..++..|++.||+|+++++++.+.+.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~~v~~ 38 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQEKVDK 38 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 4799998 8999999999999999999999987665443
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.012 Score=48.43 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=47.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|+| .|-||+.+++.|..-|.+|++.+|......... . ..+ ...++.+++. .+|+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~----~------~~~--------~~~~l~ell~--~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD----E------FGV--------EYVSLDELLA--QADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH----H------TTE--------EESSHHHHHH--H-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhcc----c------ccc--------eeeehhhhcc--hhhh
Confidence 47999999 899999999999999999999999876543111 1 011 1224667777 4899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|+.+...+
T Consensus 95 v~~~~plt 102 (178)
T PF02826_consen 95 VSLHLPLT 102 (178)
T ss_dssp EEE-SSSS
T ss_pred hhhhhccc
Confidence 99987643
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=51.36 Aligned_cols=76 Identities=28% Similarity=0.423 Sum_probs=49.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc--cCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA--GTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~~ 78 (347)
++.|||.||+|.+|+++++.+...| ..|++.. +.+..+ ..+. + +.. ...|..+.+..++..+ ..+
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~-s~e~~~-l~k~---l------GAd-~vvdy~~~~~~e~~kk~~~~~ 225 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTAC-SKEKLE-LVKK---L------GAD-EVVDYKDENVVELIKKYTGKG 225 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEc-ccchHH-HHHH---c------CCc-EeecCCCHHHHHHHHhhcCCC
Confidence 3689999999999999999999999 4554443 333332 2222 2 111 2246666554444444 336
Q ss_pred CcEEEEccccc
Q 040584 79 FDAVIHFAGLK 89 (347)
Q Consensus 79 ~d~vih~a~~~ 89 (347)
+|+|++|+|..
T Consensus 226 ~DvVlD~vg~~ 236 (347)
T KOG1198|consen 226 VDVVLDCVGGS 236 (347)
T ss_pred ccEEEECCCCC
Confidence 99999999853
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.1 Score=48.64 Aligned_cols=110 Identities=22% Similarity=0.274 Sum_probs=66.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+.+++.|...|. ++++++... .+.+...+.+.++.+ .-+++.+.
T Consensus 42 ~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np--~v~i~~~~ 118 (392)
T PRK07878 42 NARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINP--LVNVRLHE 118 (392)
T ss_pred cCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCC--CcEEEEEe
Confidence 36899999 88899999999999985 344443221 111222333333322 12344455
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
..+. .+...++++ ++|+||.+.. |...-..+-++|.+.++ .+|+.++...+|.
T Consensus 119 ~~i~-~~~~~~~~~--~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~-p~v~~~~~g~~G~ 171 (392)
T PRK07878 119 FRLD-PSNAVELFS--QYDLILDGTD-----------------NFATRYLVNDAAVLAGK-PYVWGSIYRFEGQ 171 (392)
T ss_pred ccCC-hhHHHHHHh--cCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEeccCEEE
Confidence 5554 344566777 5899998852 22222235567888776 6888887776663
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.027 Score=43.02 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=27.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhC-CCeEEEE-eCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG-GYKTVVV-DNL 35 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~-g~~v~~~-~r~ 35 (347)
++.|+|++|.+|..+++.|.+. ++++.++ .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 5889999999999999999994 8888876 443
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.067 Score=48.68 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=48.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~ 79 (347)
.+|+|+|+ |.+|..+++.+...|.. |+++++++.+.+.. .++ +...+ .|..+ .+.+.++....++
T Consensus 165 ~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~----~~~------ga~~~-i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 165 DTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA----KAL------GADFV-INSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHh------CCCEE-EcCCcchHHHHHHHhCCCCC
Confidence 58999985 99999999999999998 88887665543322 222 12221 22222 3344444443369
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||.+.|.
T Consensus 233 d~vid~~g~ 241 (339)
T cd08239 233 DVAIECSGN 241 (339)
T ss_pred CEEEECCCC
Confidence 999999863
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.095 Score=52.33 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=64.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCc------------------hhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDN------------------ASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.|+ | +|++++..|...|. ++++++...- +.....+.+.+..+ .-+++.+.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp--~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDP--YLPVEVFT 182 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCC--CCEEEEEe
Confidence 368999998 8 99999999999984 5555442211 11112233333321 23455555
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
..++ .+.+.+++. ++|+||.|.- |+..=..+.++|.+.++ .+|+.++
T Consensus 183 ~~i~-~~n~~~~l~--~~DlVvD~~D-----------------~~~~R~~ln~~a~~~~i-P~i~~~~ 229 (722)
T PRK07877 183 DGLT-EDNVDAFLD--GLDVVVEECD-----------------SLDVKVLLREAARARRI-PVLMATS 229 (722)
T ss_pred ccCC-HHHHHHHhc--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEcC
Confidence 5555 677888888 6999999962 33333345677888876 5776665
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.057 Score=47.00 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=30.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
.+|+|+|+++ +|..+++.+...|.+|+++.+++..
T Consensus 136 ~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~ 170 (271)
T cd05188 136 DTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEK 170 (271)
T ss_pred CEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHH
Confidence 5899999999 9999999999999999998876543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.022 Score=52.81 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=54.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
||+|+| +|.+|..+++.+.+.|++|++++.++....... --..+..|..|.+.+.++++..++|.|+
T Consensus 1 kililG-~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~------------ad~~~~~~~~d~~~l~~~~~~~~id~v~ 67 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV------------AHRSYVINMLDGDALRAVIEREKPDYIV 67 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhh------------CceEEEcCCCCHHHHHHHHHHhCCCEEE
Confidence 689999 699999999999999999999987654332110 1134556888999999998876799998
Q ss_pred Eccc
Q 040584 84 HFAG 87 (347)
Q Consensus 84 h~a~ 87 (347)
....
T Consensus 68 ~~~e 71 (380)
T TIGR01142 68 PEIE 71 (380)
T ss_pred eccC
Confidence 6543
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.06 Score=49.32 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=31.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
.+|+|+||+|.+|..+++.+...|.+|+++.+++.+.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~ 196 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV 196 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 5899999999999999999999999998887665443
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.06 Score=49.49 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=47.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~ 77 (347)
+.+|+|.|+ |.+|..+++.+...|.. |+++++++.+.+.. .++ +...+ .|..+. +.+.++....
T Consensus 177 g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~----~~~------Ga~~~-i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 177 GDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA----REF------GATHT-VNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHc------CCceE-EcCCCcCHHHHHHHHhCCC
Confidence 368999985 99999999999999985 88887765544332 222 11111 122222 2333444333
Q ss_pred CCcEEEEccc
Q 040584 78 KFDAVIHFAG 87 (347)
Q Consensus 78 ~~d~vih~a~ 87 (347)
++|+||.++|
T Consensus 245 g~d~vid~~g 254 (358)
T TIGR03451 245 GADVVIDAVG 254 (358)
T ss_pred CCCEEEECCC
Confidence 6999999987
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.015 Score=42.27 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=44.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhCC---CeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGG---YKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g---~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||.|+| +|-+|.+|++.|++.| ++|..+ .|++++.....+.+ .+..... +..++++ ..
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---------~~~~~~~------~~~~~~~--~a 62 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---------GVQATAD------DNEEAAQ--EA 62 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---------TTEEESE------EHHHHHH--HT
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---------ccccccC------ChHHhhc--cC
Confidence 578885 9999999999999999 999855 77766655443332 1222221 2345555 48
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||-+.-+
T Consensus 63 dvvilav~p 71 (96)
T PF03807_consen 63 DVVILAVKP 71 (96)
T ss_dssp SEEEE-S-G
T ss_pred CEEEEEECH
Confidence 999999643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.029 Score=49.91 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=36.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAK 45 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (347)
++|.|+| .|.+|..++..|+..|++|++.+++++..+...+.
T Consensus 6 ~~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~ 47 (286)
T PRK07819 6 QRVGVVG-AGQMGAGIAEVCARAGVDVLVFETTEELATAGRNR 47 (286)
T ss_pred cEEEEEc-ccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence 5899999 59999999999999999999999988876654433
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.017 Score=55.86 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=33.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA 42 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~ 42 (347)
+++++|+|+ |.+|++++..|.+.|++|+++.|+..+.+..
T Consensus 379 ~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~l 418 (529)
T PLN02520 379 GKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKEL 418 (529)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 368999997 8999999999999999999998875554443
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.06 Score=47.65 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=45.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d 80 (347)
.+|+|.|+ |.+|...++.+...|.. |+++++++.+.+. .+++ +...+ .|..+ .+.+.++....++|
T Consensus 122 ~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~----a~~~------Ga~~~-i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 122 RRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRREL----ALSF------GATAL-AEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH----HHHc------CCcEe-cCchhhHHHHHHHhCCCCCC
Confidence 58999986 89999999999889987 7777665444322 2222 11111 12222 22233333333699
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.|.
T Consensus 190 ~vid~~G~ 197 (280)
T TIGR03366 190 VALEFSGA 197 (280)
T ss_pred EEEECCCC
Confidence 99999863
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.019 Score=51.09 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=35.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA 44 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (347)
++|.|+| .|.+|..++..|++.|++|++.++++...+...+
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 6899999 5999999999999999999999998776555443
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.047 Score=54.04 Aligned_cols=72 Identities=24% Similarity=0.239 Sum_probs=56.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
++|+|.| .|-+|+.+++.|.++|+++++++.+++..+.. .+ .+...+.+|.+|++.++++=-+ ++|.|
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~----~~------~g~~v~~GDat~~~~L~~agi~-~A~~v 468 (621)
T PRK03562 401 PRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETL----RK------FGMKVFYGDATRMDLLESAGAA-KAEVL 468 (621)
T ss_pred CcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHHHHH----Hh------cCCeEEEEeCCCHHHHHhcCCC-cCCEE
Confidence 5799999 89999999999999999999998776544322 21 2567899999999988865322 58888
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
|-+.
T Consensus 469 vv~~ 472 (621)
T PRK03562 469 INAI 472 (621)
T ss_pred EEEe
Confidence 8774
|
|
| >PRK06988 putative formyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.037 Score=49.75 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=50.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH--HHHHHHHhhccCCCCeEEEe-cCCCCHHHHHHHHccC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI--AVAKVKELAGYQGNNMTFHK-LDLRDKAALEVVFAGT 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~ 77 (347)
|||+|++.| ++.+|....+.|++.|++|.++.-.+++... ....+.++.. ..++.++. .++.+.+. .+.++..
T Consensus 1 ~~mkIvf~G-s~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~--~~gip~~~~~~~~~~~~-~~~l~~~ 76 (312)
T PRK06988 1 MKPRAVVFA-YHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAA--EHGIPVITPADPNDPEL-RAAVAAA 76 (312)
T ss_pred CCcEEEEEe-CcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHH--HcCCcEEccccCCCHHH-HHHHHhc
Confidence 789999999 7779999999999999998755433221100 0001111111 12555554 56655544 4556556
Q ss_pred CCcEEEEccc
Q 040584 78 KFDAVIHFAG 87 (347)
Q Consensus 78 ~~d~vih~a~ 87 (347)
++|++|-.+.
T Consensus 77 ~~Dliv~~~~ 86 (312)
T PRK06988 77 APDFIFSFYY 86 (312)
T ss_pred CCCEEEEehh
Confidence 7998877664
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=51.31 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=49.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+|+ |-+|..+++.|...| .+|++++|+..+.....+.+ +... .+.+++.+.+. .+|
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---------g~~~-----~~~~~~~~~l~--~aD 240 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---------GGNA-----VPLDELLELLN--EAD 240 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---------CCeE-----EeHHHHHHHHh--cCC
Confidence 478999995 999999999999876 67888888766544333322 1112 22345667676 589
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.+.
T Consensus 241 vVi~at~~ 248 (311)
T cd05213 241 VVISATGA 248 (311)
T ss_pred EEEECCCC
Confidence 99999874
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=53.20 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=51.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+| +|..|+.+++.|...|. +++++.|+..+...+.+.+. ... ....+++.+.+. .+|
T Consensus 181 ~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~~-----~~~~~~l~~~l~--~aD 244 (414)
T PRK13940 181 SKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NAS-----AHYLSELPQLIK--KAD 244 (414)
T ss_pred CCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CCe-----EecHHHHHHHhc--cCC
Confidence 47899999 59999999999999995 68888887665544433321 111 223456677777 589
Q ss_pred EEEEcccccc
Q 040584 81 AVIHFAGLKA 90 (347)
Q Consensus 81 ~vih~a~~~~ 90 (347)
+||++.+...
T Consensus 245 iVI~aT~a~~ 254 (414)
T PRK13940 245 IIIAAVNVLE 254 (414)
T ss_pred EEEECcCCCC
Confidence 9999987543
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.061 Score=48.41 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=49.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC---HHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD---KAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~~~~~~~~~~~ 79 (347)
.+|+|.|++|.+|..+++.+...|..|+++.++.+.... +..+ ++..+. +..+ .+.+.++....++
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~----~~~~------g~~~~~-~~~~~~~~~~i~~~~~~~~~ 209 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAE----LRAL------GIGPVV-STEQPGWQDKVREAAGGAPI 209 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHH----HHhc------CCCEEE-cCCCchHHHHHHHHhCCCCC
Confidence 589999999999999999999999999888766544332 2221 122211 2222 2234444444469
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|+|++++|
T Consensus 210 d~v~d~~g 217 (324)
T cd08292 210 SVALDSVG 217 (324)
T ss_pred cEEEECCC
Confidence 99999976
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.031 Score=50.29 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=48.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|.| .|-||+.+++.|..-|++|++.+|...... ++..+ ....++.++++ ++|+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~---------------~~~~~----~~~~~l~e~l~--~aDv 193 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP---------------GVQSF----AGREELSAFLS--QTRV 193 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC---------------Cceee----cccccHHHHHh--cCCE
Confidence 47999999 999999999999999999999987543211 11111 12456788888 5899
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
|+.+...
T Consensus 194 vv~~lPl 200 (312)
T PRK15469 194 LINLLPN 200 (312)
T ss_pred EEECCCC
Confidence 9998753
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.023 Score=49.97 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=44.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+|.++.+|+.++..|+++|..|+.+.+.. ..+.+.++ ++|+
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------------------------~~l~~~~~--~ADI 204 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------------------------KDMASYLK--DADV 204 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------------------------hhHHHHHh--hCCE
Confidence 48999999999999999999999999999886531 12455566 5899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
||.++|..
T Consensus 205 VIsAvg~p 212 (286)
T PRK14175 205 IVSAVGKP 212 (286)
T ss_pred EEECCCCC
Confidence 99998753
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=51.70 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC---eEEEEeC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY---KTVVVDN 34 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~---~v~~~~r 34 (347)
+++|.|.||||++|..|++.|.++.| ++..+..
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS 39 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPVGELYALAS 39 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc
Confidence 37899999999999999999999644 5555543
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.091 Score=47.35 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=47.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~d 80 (347)
.+|+|.|++|.+|..+++.+...|.+|+++.+++.+.+.. ..+ ++..+ .|..+ .+.+.++ ...++|
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~----~~~------g~~~v-~~~~~~~~~~~~~~-~~~~~d 215 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL----KKL------GAKEV-IPREELQEESIKPL-EKQRWA 215 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH----HHc------CCCEE-EcchhHHHHHHHhh-ccCCcC
Confidence 4899999999999999999999999999888776543322 222 12221 22222 2233333 223689
Q ss_pred EEEEccc
Q 040584 81 AVIHFAG 87 (347)
Q Consensus 81 ~vih~a~ 87 (347)
.|+++.|
T Consensus 216 ~vld~~g 222 (326)
T cd08289 216 GAVDPVG 222 (326)
T ss_pred EEEECCc
Confidence 9999876
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.085 Score=44.70 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=68.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC--------chhHH-------HHHHHHHhhccCCCCeEEEec-CCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD--------NASEI-------AVAKVKELAGYQGNNMTFHKL-DLR 65 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~-Dl~ 65 (347)
.+|+|.| -|.+|++.++.|.+.|. ++.+++-.. .-... ..+.+++......|.++.... |.-
T Consensus 31 ~~V~VvG-iGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 31 AHVCVVG-IGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred CcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 4799999 78889999999999985 333333211 00000 011112221122445555433 445
Q ss_pred CHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC
Q 040584 66 DKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP 136 (347)
Q Consensus 66 d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~ 136 (347)
+++.+..++.. ++|.||.+.- |+..-..|+..|+.+++ -++||+++-|..
T Consensus 110 t~en~~~~~~~-~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki---~vIss~Gag~k~ 159 (263)
T COG1179 110 TEENLEDLLSK-GFDYVIDAID-----------------SVRAKVALIAYCRRNKI---PVISSMGAGGKL 159 (263)
T ss_pred CHhHHHHHhcC-CCCEEEEchh-----------------hhHHHHHHHHHHHHcCC---CEEeeccccCCC
Confidence 67778888876 7999999963 44445578999998865 346776664443
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.025 Score=53.22 Aligned_cols=70 Identities=27% Similarity=0.310 Sum_probs=49.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+| +|-+|..+++.|...|. +|++++|+..+.....+.+ + . +..+.+++.+.+. ++|
T Consensus 182 ~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-------g--~-----~~~~~~~~~~~l~--~aD 244 (423)
T PRK00045 182 GKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-------G--G-----EAIPLDELPEALA--EAD 244 (423)
T ss_pred CCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-------C--C-----cEeeHHHHHHHhc--cCC
Confidence 37899999 59999999999999997 7888888765543333221 1 1 1223355566666 589
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.+.
T Consensus 245 vVI~aT~s 252 (423)
T PRK00045 245 IVISSTGA 252 (423)
T ss_pred EEEECCCC
Confidence 99999764
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.026 Score=53.05 Aligned_cols=70 Identities=26% Similarity=0.281 Sum_probs=49.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+|+ |-+|..+++.|...| .+|++++|+..+.....+.+ +...+ +.+++.+++. ++|
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~---------g~~~i-----~~~~l~~~l~--~aD 242 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL---------GGEAV-----KFEDLEEYLA--EAD 242 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc---------CCeEe-----eHHHHHHHHh--hCC
Confidence 368999995 999999999999999 78999988765543332221 11111 2345667776 589
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.+.
T Consensus 243 vVi~aT~s 250 (417)
T TIGR01035 243 IVISSTGA 250 (417)
T ss_pred EEEECCCC
Confidence 99999764
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.028 Score=51.37 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=24.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-CCCe---EEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-GGYK---TVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~g~~---v~~~~ 33 (347)
++|.|.||||++|+.|++.|++ ..+. +..+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~s 36 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFS 36 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEec
Confidence 7899999999999999995555 5666 55543
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.024 Score=50.21 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=50.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.++++|+| +|..|+.++..|.+.|. +|+++.|+..+.+.+.+.+... ..+ .. +...+++...+. .+|
T Consensus 125 ~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~-----~~~--~~--~~~~~~~~~~~~--~~D 192 (282)
T TIGR01809 125 GFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV-----GVI--TR--LEGDSGGLAIEK--AAE 192 (282)
T ss_pred CceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc-----Ccc--ee--ccchhhhhhccc--CCC
Confidence 36899999 68889999999999996 6889999877665555443221 111 11 111123334444 589
Q ss_pred EEEEccccc
Q 040584 81 AVIHFAGLK 89 (347)
Q Consensus 81 ~vih~a~~~ 89 (347)
+||++....
T Consensus 193 iVInaTp~g 201 (282)
T TIGR01809 193 VLVSTVPAD 201 (282)
T ss_pred EEEECCCCC
Confidence 999997654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0092 Score=54.50 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
|||+|.|.| +|.+|..++..|.+.||+|++++|+
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecH
Confidence 889999998 9999999999999999999999885
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.028 Score=50.99 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=26.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-CCCe---EEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-GGYK---TVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~g~~---v~~~~ 33 (347)
++|.|.||||++|+.|++.|.+ ..++ +..+.
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~a 40 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLS 40 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEE
Confidence 6899999999999999999995 6777 54454
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.17 Score=44.67 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=64.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|||.| .|.+|..+++.|...|. .+++++... .+.+...+.+.++.+ .-+++.+.
T Consensus 19 ~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp--~V~V~~~~ 95 (286)
T cd01491 19 KSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP--YVPVTVST 95 (286)
T ss_pred cCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC--CCEEEEEe
Confidence 35899999 77889999999999996 455554322 112223344444422 12233333
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
..+ + .+.+. ++|+||.+.. |...-..+-++|++.++ .+|...+.+.+|.
T Consensus 96 ~~~-~----~~~l~--~fdvVV~~~~-----------------~~~~~~~in~~c~~~~i-pfI~a~~~G~~G~ 144 (286)
T cd01491 96 GPL-T----TDELL--KFQVVVLTDA-----------------SLEDQLKINEFCHSPGI-KFISADTRGLFGS 144 (286)
T ss_pred ccC-C----HHHHh--cCCEEEEecC-----------------CHHHHHHHHHHHHHcCC-EEEEEeccccEEE
Confidence 332 1 23455 4788888742 22223356678888876 7998888877764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.091 Score=47.25 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=49.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~~ 79 (347)
.+|+|+|++|.+|..+++.+...|.+|+++.+++...+.. ..+ ++..+ .|..+. +.+.+...+.++
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~----~~~------g~~~~-~~~~~~~~~~~~~~~~~~~~~ 212 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV----RAL------GADVA-VDYTRPDWPDQVREALGGGGV 212 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHc------CCCEE-EecCCccHHHHHHHHcCCCCc
Confidence 5799999999999999999999999999987765543322 221 12221 222222 233333433369
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|.|+++.|
T Consensus 213 d~vl~~~g 220 (324)
T cd08244 213 TVVLDGVG 220 (324)
T ss_pred eEEEECCC
Confidence 99999976
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.05 Score=48.17 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=31.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
|+|.|.| .|.+|..++..|.+.|++|++.+|++...
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~~~ 36 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRESTC 36 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 4799999 89999999999999999999999875443
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.07 Score=46.21 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=43.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC---CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG---GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|.++|.|.| +|.||+.+++.|.+. ++++..+.++.... .+.+. ..+ . -.+++.+++..
T Consensus 1 ~~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~---~~~~~-------~~~-----~--~~~~l~~ll~~- 61 (267)
T PRK13301 1 MTHRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAADL---PPALA-------GRV-----A--LLDGLPGLLAW- 61 (267)
T ss_pred CceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCHHH---HHHhh-------ccC-----c--ccCCHHHHhhc-
Confidence 789999999 999999999999764 36776664443211 11110 011 1 12234554433
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|+||-||++
T Consensus 62 ~~DlVVE~A~~ 72 (267)
T PRK13301 62 RPDLVVEAAGQ 72 (267)
T ss_pred CCCEEEECCCH
Confidence 69999999975
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.097 Score=47.79 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=46.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
.+|+|+|+ |.+|...++.+...|. .|+++++++.+.+.. .++ +...+ .|..+. ++.+..+.. ++|
T Consensus 171 ~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a----~~l------Ga~~v-i~~~~~-~~~~~~~~~g~~D 237 (343)
T PRK09880 171 KRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA----REM------GADKL-VNPQND-DLDHYKAEKGYFD 237 (343)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH----HHc------CCcEE-ecCCcc-cHHHHhccCCCCC
Confidence 58999985 9999999999999998 588888776554322 222 12221 233222 233333221 489
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.++|.
T Consensus 238 ~vid~~G~ 245 (343)
T PRK09880 238 VSFEVSGH 245 (343)
T ss_pred EEEECCCC
Confidence 99999873
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.02 Score=51.84 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=32.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
||+|.|.| .|-+|..++..|++.|++|.+++|++...+
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~ 38 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGHDVTLWARDPEQAA 38 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 36899999 699999999999999999999998755443
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.19 Score=43.19 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=65.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc-------------------hhHHHHHHHHHhhccCCCCeEEEecC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN-------------------ASEIAVAKVKELAGYQGNNMTFHKLD 63 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (347)
+|+|.| .|.+|..+++.|...|. ++++++...- +.+...+.+.++.+ .-++..+..+
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np--~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNP--NCKVVPYQNK 77 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCC--CCEEEEEecc
Confidence 589999 88999999999999985 3444433211 11112233333322 2345556666
Q ss_pred CCCHHHH-HHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 64 LRDKAAL-EVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 64 l~d~~~~-~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
+.+...+ ...++ ++|+||.+.. |...-..+-+.|.+.++ .+|..++.+.+|
T Consensus 78 i~~~~~~~~~f~~--~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~i-plI~~g~~G~~G 129 (234)
T cd01484 78 VGPEQDFNDTFFE--QFHIIVNALD-----------------NIIARRYVNGMLIFLIV-PLIESGTEGFKG 129 (234)
T ss_pred CChhhhchHHHHh--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEcccCCce
Confidence 6543332 34566 5899998842 34444456677887775 688888766555
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.13 Score=39.46 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=45.0
Q ss_pred EEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhc-------------------cCCCCeEEEecC
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAG-------------------YQGNNMTFHKLD 63 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~D 63 (347)
|.|+|+||-||+..+.-+.+.. ++|+++.-.. ..+.+.++..++.+ .....++++.+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~-n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G- 78 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGS-NIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSG- 78 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESS-THHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEES-
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCC-CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeC-
Confidence 6899999999999999999976 8888765322 22233333333311 01122333222
Q ss_pred CCCHHHHHHHHccCCCcEEEEccc
Q 040584 64 LRDKAALEVVFAGTKFDAVIHFAG 87 (347)
Q Consensus 64 l~d~~~~~~~~~~~~~d~vih~a~ 87 (347)
.+.+.++++...+|+|++...
T Consensus 79 ---~~~l~~~~~~~~~D~vv~Ai~ 99 (129)
T PF02670_consen 79 ---PEGLEELAEEPEVDIVVNAIV 99 (129)
T ss_dssp ---HHHHHHHHTHTT-SEEEE--S
T ss_pred ---hHHHHHHhcCCCCCEEEEeCc
Confidence 455556665446888888753
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.048 Score=48.52 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=25.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~ 33 (347)
-+|.|.||+|+.|..|++.|++.. .++..+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~ 33 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIA 33 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEe
Confidence 379999999999999999999874 5665553
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.031 Score=42.30 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=50.9
Q ss_pred ceEEEEcCC---CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGV---GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGat---G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+|+|.|++ +-.|..+.+.|.+.||+|+.+.-..... .+... ..++.+.-. .+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i---------------~G~~~-------y~sl~e~p~--~i 56 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI---------------LGIKC-------YPSLAEIPE--PI 56 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE---------------TTEE--------BSSGGGCSS--T-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE---------------CcEEe-------eccccCCCC--CC
Confidence 689999998 7789999999999999999985433221 12221 112222112 68
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
|.++.+... ..+..+++.|.+.|++.+++.++
T Consensus 57 Dlavv~~~~------------------~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 57 DLAVVCVPP------------------DKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp SEEEE-S-H------------------HHHHHHHHHHHHHT-SEEEE-TT
T ss_pred CEEEEEcCH------------------HHHHHHHHHHHHcCCCEEEEEcc
Confidence 999888643 22346788888889988888887
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.039 Score=52.09 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|||+| +|.-..+|+..|.+.|++|+++.-+........ .. .++..|..|.+.+.++++..++|
T Consensus 1 ~~~kVLvlG-~G~re~al~~~l~~~g~~v~~~~~~~Npg~~~~----------a~--~~~~~~~~d~e~l~~~~~~~~id 67 (435)
T PRK06395 1 MTMKVMLVG-SGGREDAIARAIKRSGAILFSVIGHENPSIKKL----------SK--KYLFYDEKDYDLIEDFALKNNVD 67 (435)
T ss_pred CceEEEEEC-CcHHHHHHHHHHHhCCCeEEEEECCCChhhhhc----------cc--ceeecCCCCHHHHHHHHHHhCCC
Confidence 899999999 677788999999999998887643211110000 11 23457889999999999888899
Q ss_pred EEEEcc
Q 040584 81 AVIHFA 86 (347)
Q Consensus 81 ~vih~a 86 (347)
.||-..
T Consensus 68 ~Vi~~~ 73 (435)
T PRK06395 68 IVFVGP 73 (435)
T ss_pred EEEECC
Confidence 999653
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.11 Score=45.84 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=33.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
++|.++| .|-.|..++++|++.||+|++.+|++.+.
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~~~ka 36 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRTPEKA 36 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCChhhh
Confidence 5788999 99999999999999999999999998874
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.093 Score=47.40 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
.+++|.|++|.+|..+++.+...|.+|+++.+++...
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~ 177 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKA 177 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHH
Confidence 5899999999999999999999999999887765443
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.4 Score=42.10 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=27.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-CCCeEEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-GGYKTVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~ 33 (347)
++|.|.|++|.+|+.+++.+.+ .+.++.++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~ 33 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAF 33 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 7999999999999999999987 478887643
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.04 Score=49.64 Aligned_cols=67 Identities=25% Similarity=0.269 Sum_probs=50.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|+| .|+||+-++..-...|+.|++++-.+....... .-..+..+-.|.+.+.++.+ ++|+
T Consensus 1 ~~tvgIlG-GGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~v------------a~~~i~~~~dD~~al~ela~--~~DV 65 (375)
T COG0026 1 MKTVGILG-GGQLGRMMALAAARLGIKVIVLDPDADAPAAQV------------ADRVIVAAYDDPEALRELAA--KCDV 65 (375)
T ss_pred CCeEEEEc-CcHHHHHHHHHHHhcCCEEEEecCCCCCchhhc------------ccceeecCCCCHHHHHHHHh--hCCE
Confidence 58899999 899999999999999999999986555432211 11345566678889999988 5777
Q ss_pred EE
Q 040584 82 VI 83 (347)
Q Consensus 82 vi 83 (347)
|=
T Consensus 66 iT 67 (375)
T COG0026 66 IT 67 (375)
T ss_pred EE
Confidence 63
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.23 Score=43.85 Aligned_cols=107 Identities=12% Similarity=0.151 Sum_probs=62.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc-------------------hhHHHHHHHHHhhccCCCCeEEEec
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN-------------------ASEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
.+|+|.| .|.+|+.+++.|+..|. ++.+++...- +.+...+.+.++.+ .-+++.+..
T Consensus 28 s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP--~v~V~~~~~ 104 (287)
T PRK08223 28 SRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINP--ELEIRAFPE 104 (287)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCC--CCEEEEEec
Confidence 5899999 78899999999999985 3444433211 11122333333322 223444444
Q ss_pred CCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 63 Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
.++ .+...++++ ++|+||.+.-.. +...-..+-++|.+.++ .+|+.+...
T Consensus 105 ~l~-~~n~~~ll~--~~DlVvD~~D~~---------------~~~~r~~ln~~c~~~~i-P~V~~~~~g 154 (287)
T PRK08223 105 GIG-KENADAFLD--GVDVYVDGLDFF---------------EFDARRLVFAACQQRGI-PALTAAPLG 154 (287)
T ss_pred ccC-ccCHHHHHh--CCCEEEECCCCC---------------cHHHHHHHHHHHHHcCC-CEEEEeccC
Confidence 454 344567777 589999764210 11222346678888876 677776544
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.093 Score=49.97 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=32.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEI 41 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~ 41 (347)
||+|.|.| .|++|..++-.|+++ |++|++++..+.+.+.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~ 41 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDA 41 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHH
Confidence 47899998 999999999999998 4889999887665443
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.05 Score=48.19 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=49.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
++++|.| +|..|++++..|.+.|. +++++.|+..+.+.+.+.+.... .... ....+ ...+...+. .+|+
T Consensus 128 k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~---~~~~-~~~~~---~~~~~~~~~--~~di 197 (283)
T PRK14027 128 DSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAV---GREA-VVGVD---ARGIEDVIA--AADG 197 (283)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc---Ccce-EEecC---HhHHHHHHh--hcCE
Confidence 6899999 58889999999999996 68888888776665554443211 1111 11122 222333344 4899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|||+....
T Consensus 198 vINaTp~G 205 (283)
T PRK14027 198 VVNATPMG 205 (283)
T ss_pred EEEcCCCC
Confidence 99997654
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.035 Score=50.47 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=46.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|.| .|-||+.+++.|...|.+|++.+|...... .. . .++. ..++.++++ .+|+
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~---~------~~~~--------~~~l~ell~--~aDi 207 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEA--EK---E------LGAE--------YRPLEELLR--ESDF 207 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhh--HH---H------cCCE--------ecCHHHHHh--hCCE
Confidence 47999999 799999999999999999999988654321 10 0 0111 124667777 4899
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
|+.+...
T Consensus 208 V~l~lP~ 214 (333)
T PRK13243 208 VSLHVPL 214 (333)
T ss_pred EEEeCCC
Confidence 9998753
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.13 Score=47.60 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=46.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~ 78 (347)
.+|+|+|+ |.+|..+++.+...|. .|+++++++.+.+.. .++ +...+ .|..+. +.+.++... +
T Consensus 193 ~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a----~~~------Ga~~~-i~~~~~~~~~~i~~~~~~-g 259 (371)
T cd08281 193 QSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA----REL------GATAT-VNAGDPNAVEQVRELTGG-G 259 (371)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH----HHc------CCceE-eCCCchhHHHHHHHHhCC-C
Confidence 58999985 9999999999999998 588887765544322 222 12111 222222 233333333 6
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||.++|.
T Consensus 260 ~d~vid~~G~ 269 (371)
T cd08281 260 VDYAFEMAGS 269 (371)
T ss_pred CCEEEECCCC
Confidence 9999999863
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.12 Score=49.63 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=49.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+| .|.+|..+++.|.++|++|+++++.+... ....+.+.. .++.++.++-.. ... .+|
T Consensus 16 ~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~------~gv~~~~~~~~~------~~~--~~D 80 (480)
T PRK01438 16 GLRVVVAG-LGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEA------LGATVRLGPGPT------LPE--DTD 80 (480)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHH------cCCEEEECCCcc------ccC--CCC
Confidence 36899999 58899999999999999999998654322 111222322 256665544221 122 589
Q ss_pred EEEEcccccc
Q 040584 81 AVIHFAGLKA 90 (347)
Q Consensus 81 ~vih~a~~~~ 90 (347)
.||...|..+
T Consensus 81 ~Vv~s~Gi~~ 90 (480)
T PRK01438 81 LVVTSPGWRP 90 (480)
T ss_pred EEEECCCcCC
Confidence 9999998754
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.14 Score=47.62 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=52.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
.+++|+| .|-+|+.+++.|.++|+++.++... ..+. . ...+...+.+|.+|.+.++++--+ +++.|
T Consensus 241 ~HvII~G-~g~lg~~v~~~L~~~g~~vvVId~d--~~~~---~-------~~~g~~vI~GD~td~e~L~~AgI~-~A~aV 306 (393)
T PRK10537 241 DHFIICG-HSPLAINTYLGLRQRGQAVTVIVPL--GLEH---R-------LPDDADLIPGDSSDSAVLKKAGAA-RARAI 306 (393)
T ss_pred CeEEEEC-CChHHHHHHHHHHHCCCCEEEEECc--hhhh---h-------ccCCCcEEEeCCCCHHHHHhcCcc-cCCEE
Confidence 5799999 7889999999999999999888743 1111 1 123567899999999988876433 58888
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
|-+.
T Consensus 307 I~~t 310 (393)
T PRK10537 307 LALR 310 (393)
T ss_pred EEcC
Confidence 8654
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.11 Score=46.81 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=47.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH-HHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK-AALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~d~ 81 (347)
.+|+|.|++|.+|..+++.+...|.+|+++.++.++.+.. ..+ +...+ .|..+. ..+.+.....++|.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~----~~~------g~~~~-~~~~~~~~~~~~~~~~~~~d~ 216 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYL----KSL------GASEV-LDREDLLDESKKPLLKARWAG 216 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----Hhc------CCcEE-EcchhHHHHHHHHhcCCCccE
Confidence 3799999999999999999999999999888765543322 222 11221 122222 12233333336899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
|+++.+
T Consensus 217 vi~~~~ 222 (325)
T cd05280 217 AIDTVG 222 (325)
T ss_pred EEECCc
Confidence 999875
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.044 Score=50.60 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=47.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|.|.| .|-||+.++++|..-|.+|++.+|.....+. ... .++ .-..+++++++ .+|+
T Consensus 192 gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~-~~~---------~g~-------~~~~~l~ell~--~aDv 251 (385)
T PRK07574 192 GMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEV-EQE---------LGL-------TYHVSFDSLVS--VCDV 251 (385)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhh-Hhh---------cCc-------eecCCHHHHhh--cCCE
Confidence 47899999 8999999999999999999999887532211 100 011 11234677887 5899
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
|+.+...
T Consensus 252 V~l~lPl 258 (385)
T PRK07574 252 VTIHCPL 258 (385)
T ss_pred EEEcCCC
Confidence 9988753
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.033 Score=49.77 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
++|.|+| .|.+|..+++.|++.||+|++.+|++.+.+
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~ 38 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDVNPQAVD 38 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcCCHHHHH
Confidence 5899998 999999999999999999999998766543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 347 | ||||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 1e-114 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 1e-113 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 1e-113 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 1e-99 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-99 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 2e-99 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 2e-99 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-99 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-99 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-99 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-99 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 7e-99 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-99 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-98 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 1e-95 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 6e-63 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 1e-50 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 3e-26 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 3e-25 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 5e-25 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 1e-23 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 6e-19 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 6e-19 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 5e-18 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 5e-18 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 5e-18 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 4e-17 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 6e-17 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 6e-17 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 6e-17 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-16 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 3e-15 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 5e-15 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 1e-14 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-13 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 5e-13 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-12 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 2e-11 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 8e-10 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 1e-09 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 2e-09 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 4e-09 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 6e-08 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 8e-08 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 2e-07 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-07 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 3e-07 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 4e-07 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 2e-06 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 4e-06 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 7e-06 | ||
| 3rft_A | 267 | Crystal Structure Of Uronate Dehydrogenase From Agr | 1e-05 | ||
| 1qrr_A | 394 | Crystal Structure Of Sqd1 Protein Complex With Nad | 6e-05 | ||
| 1e6u_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Le | 1e-04 | ||
| 3rfx_A | 267 | Crystal Structure Of Uronate Dehydrogenase From Agr | 1e-04 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-04 | ||
| 1i24_A | 404 | High Resolution Crystal Structure Of The Wild-Type | 2e-04 | ||
| 1bsv_A | 321 | Gdp-Fucose Synthetase From Escherichia Coli Complex | 2e-04 | ||
| 1i2b_A | 404 | Crystal Structure Of Mutant T145a Sqd1 Protein Comp | 2e-04 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-04 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-04 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-04 | ||
| 1e7s_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K1 | 4e-04 | ||
| 1bws_A | 321 | Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose E | 5e-04 | ||
| 1e7q_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S1 | 5e-04 |
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From Agrobacterium Tumefaciens Length = 267 | Back alignment and structure |
|
| >pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose Length = 394 | Back alignment and structure |
|
| >pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Length = 321 | Back alignment and structure |
|
| >pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From Agrobacterium Tumefaciens, Y136a Mutant Complexed With Nad Length = 267 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With Nadph Length = 321 | Back alignment and structure |
|
| >pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r Length = 321 | Back alignment and structure |
|
| >pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In The Biosynthesis Of Gdp-L- Fucose Length = 321 | Back alignment and structure |
|
| >pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a Length = 321 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 644 bits (1665), Expect = 0.0
Identities = 180/339 (53%), Positives = 221/339 (65%), Gaps = 5/339 (1%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
ILV GG GYIGSHT ++LL GY V+ DNL N+ A+A+++++ G FH+
Sbjct: 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITG---KTPAFHET 62
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D+ AL +F A IHFA LKAVGESV KP+ Y+ NNL ++LL VM K
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK 122
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+VFSSSAT YG P+ P E FPL A NPYG++KL E+I RDV +D W++ LRYF
Sbjct: 123 RIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYF 182
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
NPVGAH SG GEDP GIPNNLMP+V QVAVG+ L VFG+DY T DGT VRDYIHVVD
Sbjct: 183 NPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVD 242
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
LA GHIAAL L+ + NLGTG+G SVLE+V AFEKASG+ +P RRPGD
Sbjct: 243 LARGHIAALDALER-RDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVA 301
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340
YA+ A + WKA+ ++ MC D W W NP G+
Sbjct: 302 ECYANPAAAAETIGWKAERDLERMCADHWRWQENNPRGF 340
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 639 bits (1652), Expect = 0.0
Identities = 177/340 (52%), Positives = 231/340 (67%), Gaps = 6/340 (1%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGD 58
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 124 LVFSSSATAYGWPKVVPCTEEFPL-QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+FSSSAT YG +P E FP +PYG+SKL +E+I D+ ++ +W I LLRYF
Sbjct: 119 FIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
NPVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+D
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
LADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 239 LADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 298 AYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYP 337
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 639 bits (1651), Expect = 0.0
Identities = 206/351 (58%), Positives = 247/351 (70%), Gaps = 12/351 (3%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA------SEIAVAKVKELAGYQG 54
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA ++ +V+EL G
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG--- 57
Query: 55 NNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE 114
++ F ++D+ D+ AL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE
Sbjct: 58 RSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLE 117
Query: 115 VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGRSKLFIEEICRDVHRSDSE 173
+M AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D
Sbjct: 118 IMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKT 177
Query: 174 WKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
W +LLRYFNP GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
VRDYIHVVDLA GHIAALRKL + + GC +YNLGTG G SVL+MV A EKASGKKIP
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKV 296
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESP 343
RR GD YA+ A+ EL W A G+D MC D W W +NP G+ +
Sbjct: 297 VARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQ 347
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 638 bits (1647), Expect = 0.0
Identities = 178/353 (50%), Positives = 243/353 (68%), Gaps = 12/353 (3%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
+K +LV GG GYIGSHTV++L+ GY VV DNL N++ +VA+++ L +++ F+
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTK---HHIPFY 66
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
++DL D+ LE VF K D+VIHFAGLKAVGES Q PL Y+ NN+ GT+ LLE+M +
Sbjct: 67 EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN 126
Query: 121 CKNLVFSSSATAYG----WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSE-WK 175
VFSSSAT YG +P ++P EE PL NPYG +K IE I D++ SD + WK
Sbjct: 127 VSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWK 186
Query: 176 IILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234
+LRYFNP+GAHPSG GEDP GIPNNL+P++ QVAVGRR L +FG DY ++DGT +R
Sbjct: 187 FAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 246
Query: 235 DYIHVVDLADGHIAALRKLD---DPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
DYIHVVDLA GHIAAL+ L+ + + C +NLG+GKG++V E+ AF KASG +P
Sbjct: 247 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYK 306
Query: 292 KSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESPN 344
+GRR GD + A ++A+REL W+ + +++ C+D W W ++NP+GY+
Sbjct: 307 VTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQLRG 359
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 551 bits (1423), Expect = 0.0
Identities = 136/387 (35%), Positives = 187/387 (48%), Gaps = 44/387 (11%)
Query: 4 NILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDNASEIAVA---------KVKELAGYQ 53
+LV GG GYIGSH V LL + V+VD+L + K+++ G +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 54 GNNM----TFHKLDLRDKAALEVVFAG-TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTG 108
D+R++ L VF DAV+H AVGESV+ PL Y+DNN+ G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 109 TITLLEVMAAHGCKNLVFSSSATAYGWP-------KVVPCTEEFPLQAMNPYGRSKLFIE 161
+ LL+ M H C ++FSSSA +G P P +PYG SKL E
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRG----IPNNLMPFVTQVAVGRR- 215
+ RD + K I LRYFN GAH G GE +G IP L ++ +A +R
Sbjct: 184 RMIRDCAEAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRL 242
Query: 216 ---------PALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKL-----DDPKVGCE 261
+ +FGTDY T DGT VRDY+HV DLA HI AL + +D
Sbjct: 243 TIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS 302
Query: 262 VYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYG 321
V+NLGT +G SV E++ K +G IP+ + GRR GD + A+++KA L WK KY
Sbjct: 303 VFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYD 362
Query: 322 -IDEMCRDQWNWASKNPYGYESPNSTN 347
++ + W + +P GY S +
Sbjct: 363 TLEAIMETSWKFQRTHPNGYASQENGT 389
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 540 bits (1393), Expect = 0.0
Identities = 140/341 (41%), Positives = 189/341 (55%), Gaps = 15/341 (4%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+IL+ GG GYIGSH V +L+ G VVVDNL E A+ + + Y G
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKF--YNG-------- 51
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DLRDKA L VF +AV+HFA VG S++KPL Y++NN+ G + LLEVM
Sbjct: 52 DLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD 111
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+FSS+A YG V TEE N YG +KL IE++ ++ + + RYF
Sbjct: 112 KFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQAS-NLRYKIFRYF 170
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
N GA P+G GED R +L+P V QVA+G+R + +FG DY+T DGT +RDYIHV D
Sbjct: 171 NVAGATPNGIIGEDHRP-ETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
L H L+ L + + YNLG G G SV E+V A + + +IP + RR GD
Sbjct: 230 LVAAHFLGLKDLQNGG-ESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPA 288
Query: 302 IVYASTEKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 341
+ AS++KA+ +L W +Y + + WNW K P GYE
Sbjct: 289 RLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGYE 329
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-144
Identities = 78/334 (23%), Positives = 123/334 (36%), Gaps = 42/334 (12%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
IL+ GG G +GS+ + L G++ +V+DN + V L + +
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGL--------SVIEGS 73
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ D LE F K V+H A A + N+ G+I + + + G K
Sbjct: 74 VTDAGLLERAFDSFKPTHVVHSA---AAYKDPDDWAEDAATNVQGSINVAKAASKAGVKR 130
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
L+ +A YG P VP + P YG SK E S+ ++ LR N
Sbjct: 131 LLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLM-----MSDVPVVSLRLAN 185
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
G + G P F ++ G++ F +D VRD++ + D
Sbjct: 186 VTGPRLAI-GPIP--------TFYKRLKAGQK----CFCSDT-------VRDFLDMSDFL 225
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI--PLVKSGRRPGDAE 301
+L++ V+N+ TG+G S+ E+ G + P+ D
Sbjct: 226 AIADLSLQEGR----PTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVP 281
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335
V K E E WKAK + Q W K
Sbjct: 282 SVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDK 315
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 352 bits (907), Expect = e-122
Identities = 104/331 (31%), Positives = 153/331 (46%), Gaps = 28/331 (8%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+LV GG G+IGSH V LL G + V+DNL V K + F ++D
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK----------GVPFFRVD 51
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
LRDK +E F + V H A +V SV+ P+ F+ NL G + LLE +G +
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111
Query: 124 LVFSSSATA-YG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
LVF+S+ A YG P+ E +P + +PY SK E +S K + LRY
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQS-YGLKWVSLRY 170
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
N G +DP G ++ + + P +T++ D VRDY++V D
Sbjct: 171 GNVYGP-----RQDPHG-EAGVVAIFAERVLKGLP-VTLYARKTPG-DEGCVRDYVYVGD 222
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
+A+ H AL L+ +YN+GTG+G + E++ A +A+GK + + RPGD E
Sbjct: 223 VAEAHALALFSLE------GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLE 276
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
S K W+ K G E R +
Sbjct: 277 RSVLSPLKL-MAHGWRPKVGFQEGIRLTVDH 306
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 312 bits (803), Expect = e-106
Identities = 81/337 (24%), Positives = 135/337 (40%), Gaps = 39/337 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
I+V GG G+IGSH V +L + VV+DNL + +E V + K
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLS-ESNEIVVIDNLSSGNEEFVNE----------AARLVKA 50
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DL + + + V H A V + P + NN+ T LLE M G
Sbjct: 51 DLAADDIKDYLK---GAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS 107
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+VF+S++T YG KV+P E++P ++ YG SKL E + + + + + R+
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHT-FDMQAWIYRFA 166
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
N +G I F+ ++ L + G +G + YI++ D
Sbjct: 167 NVIGRRS-----THGVIY----DFIMKLKRNPEE-LEILG------NGEQNKSYIYISDC 210
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG---RRPGD 299
D + LR + ++N+G+ V + + G +G GD
Sbjct: 211 VDAMLFGLRGDER----VNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGD 266
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
++ S EK + L WK +Y +E R ++
Sbjct: 267 VPVMLLSIEKL-KRLGWKPRYNSEEAVRMAVRDLVED 302
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 309 bits (795), Expect = e-105
Identities = 89/342 (26%), Positives = 144/342 (42%), Gaps = 37/342 (10%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGSH V +L+ GY+ VVVDNL + V + H D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNP----------SAELHVRD 51
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L+D + + K D V HFA V S +P+ +F+ N+ T +LE G +
Sbjct: 52 LKDYSWGAGI----KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT 107
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+VF+SS+T YG V+P EE P + ++ YG +K E +C R + + +RY N
Sbjct: 108 VVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARL-FGVRCLAVRYAN 166
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
VG I + F+ ++ L V G DGT + Y++V D
Sbjct: 167 VVGPRL-----RHGVIYD----FIMKLRRNPNV-LEVLG------DGTQRKSYLYVRDAV 210
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR------P 297
+ +AA +K ++ N+G VL++ + G + + P
Sbjct: 211 EATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWP 270
Query: 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYG 339
GD + + + K + W+ E + +K +G
Sbjct: 271 GDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKELWG 312
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 307 bits (787), Expect = e-102
Identities = 82/381 (21%), Positives = 133/381 (34%), Gaps = 56/381 (14%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL-----------DNASEIA--VAKVK 47
++VIGG GY G T L L Y+ +VDNL ++ + IA ++
Sbjct: 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS 69
Query: 48 ELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESV---QKPLPYFDN 104
G ++ + D+ D L F + D+V+HF ++ S+ + + N
Sbjct: 70 RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 129
Query: 105 NLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKV------VPCTEE-------FPLQAM 150
N+ GT+ +L + G + +LV + YG P + + T +P QA
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 151 NPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIP---------N 201
+ Y SK+ ++ + L G
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWG-IRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 248
Query: 202 NLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCE 261
L F Q AVG LTV+G T R Y+ + D A+
Sbjct: 249 ALNRFCVQAAVGHP--LTVYGKGGQT------RGYLDIRDTVQCVEIAIANPAKAG-EFR 299
Query: 262 VYNLGTGKGTSVLEMVAAFEKASGK-----KIPLVKSGRRPGDAEIVYASTEKAERELNW 316
V+N T + SV E+ + KA K K V + R + E Y + EL
Sbjct: 300 VFNQFTEQ-FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAE-EHYYNAKHTKLMELGL 357
Query: 317 KAKYGIDEMCRDQWNWASKNP 337
+ Y D + N+A +
Sbjct: 358 EPHYLSDSLLDSLLNFAVQFK 378
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 1e-84
Identities = 62/353 (17%), Positives = 113/353 (32%), Gaps = 51/353 (14%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKT-------VVVDNLDNASEIAVAKVKELAGYQ 53
+I +IG G +G +L+ G ++D + +
Sbjct: 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFS--------- 63
Query: 54 GNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLL 113
+ DL E + + D + H A + GE+ + NL GT L
Sbjct: 64 -GAVDARAADLSAPGEAEKLVE-ARPDVIFHLAAI-VSGEAELDFDKGYRINLDGTRYLF 120
Query: 114 EVMAAHGCKN-----LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVH 168
+ + K+ +VF+SS +G P P +EF + YG K E + D
Sbjct: 121 DAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYS 180
Query: 169 RSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG---TDY 225
R + I +R GK P + + + + + A+ +
Sbjct: 181 R-RGFFDGIGIRLPT--ICIRPGK---PNAAASGFFSNILREPLVGQEAVLPVPESIRHW 234
Query: 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG 285
+ V IH + + R ++ G +V E + A K +G
Sbjct: 235 HASPRSAVGFLIHGAMIDVEKVGPRR----------NLSM-PGLSATVGEQIEALRKVAG 283
Query: 286 KKIPLVKSGRRPGDAEIVYAST------EKAERELNWKAKYGIDEMCRDQWNW 332
+K + R P + + K REL + A+ +E+ +
Sbjct: 284 EKAVALIR-REPNEMIMRMCEGWAPGFEAKRARELGFTAESSFEEIIQVHIED 335
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 2e-82
Identities = 64/334 (19%), Positives = 116/334 (34%), Gaps = 44/334 (13%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M+ I V GG G++G + V + G +++ + N+ +
Sbjct: 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS-------------IGNKAINDYEYR 47
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D +++ DAV+H A + Q + F +N T L + +
Sbjct: 48 VSDYTL---EDLINQLNDVDAVVHLAATR----GSQGKISEFHDNEILTQNLYDACYENN 100
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
N+V++S+ +AY +P E+ YG SKL E I R I LR
Sbjct: 101 ISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRK-KGLCIKNLR 159
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
+ + G N ++ F Q G + T+ + R++++
Sbjct: 160 FAHLYG---------FNEKNNYMINRFFRQAFHGEQL--TLHA------NSVAKREFLYA 202
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG-RRPG 298
D A I AL++ + +N+G+G + E+ A G K L+
Sbjct: 203 KDAAKSVIYALKQ----EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANE 258
Query: 299 DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
Y + KA+ L++ Y +
Sbjct: 259 GIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLL 292
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 6e-78
Identities = 68/334 (20%), Positives = 111/334 (33%), Gaps = 45/334 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K + + G G IGSH LL G K V +DN + N+TF +
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK--------DHPNLTFVEG 73
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+ D A + + + DAV+H A A + N G +++ +
Sbjct: 74 SIADHALVNQLIGDLQPDAVVHTA---ASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVG 130
Query: 123 NLVFSSSATAYGW-PKVVPCTEEFPLQAMN-PYGRSKLFIEEICRDVHRSDSEWKIILLR 180
V+ +A YG P P + P N Y SK E+ D + R
Sbjct: 131 RFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLE-YSGLDF----VTFR 185
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
N VG PR + L F +++ G++ RD++ V
Sbjct: 186 LANVVG---------PRNVSGPLPIFFQRLSEGKKC-----------FVTKARRDFVFVK 225
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR--RPG 298
DLA + A+ VG Y+ +G ++ E+ A +A R P
Sbjct: 226 DLARATVRAVD-----GVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPD 280
Query: 299 DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
DA + + ++ + E +
Sbjct: 281 DAPSILLDPSRTIQDFGKIEFTPLKETVAAAVAY 314
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 9e-76
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 25/339 (7%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGN-NMTF 59
K L+ G G+IGS+ + LL K V +DN + + +V+ L + N F
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKF 85
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
+ D+R+ AG D V+H A L +V S+ P+ N+ G + +L
Sbjct: 86 IQGDIRNLDDCNNACAG--VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA 143
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
++ +++S++ YG +P E+ + ++PY +K E R + I L
Sbjct: 144 KVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRC-YGFSTIGL 202
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
RYFN V G+ +DP G ++P + + + G + G DG RD+ +
Sbjct: 203 RYFN-V----FGRRQDPNGAYAAVIPKWTSSMIQGDDV--YING------DGETSRDFCY 249
Query: 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR--- 295
+ + ++ A +VYN+ G TS+ ++ A +
Sbjct: 250 IENTVQANLLAATA--GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYR 307
Query: 296 --RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
R GD A KA + L + KY + W
Sbjct: 308 DFREGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPW 346
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-70
Identities = 81/337 (24%), Positives = 135/337 (40%), Gaps = 25/337 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGN-NMTFHK 61
K L+ G G+IGS+ + +LL + +DN + + +VK L + F +
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE 85
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+RD E V G D V+H A L +V S+ P+ N+TG + +L
Sbjct: 86 GDIRDLTTCEQVMKG--VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
++ +++S++ YG +P EE ++PY +K E + R+ +K I LRY
Sbjct: 144 QSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYART-YGFKTIGLRY 202
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
FN G DP G ++P + + G + G DG RD+ ++
Sbjct: 203 FNVFG--RRQ---DPNGAYAAVIPKWTAAMLKGDDV--YING------DGETSRDFCYID 249
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR----- 295
++ +I + L +YN+ G T++ E+ + K
Sbjct: 250 NVIQMNILSA--LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
R GD A KA L ++ I E R W
Sbjct: 308 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 7e-68
Identities = 76/326 (23%), Positives = 130/326 (39%), Gaps = 40/326 (12%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
+ IL+ GG G+IG H L+ G + V+D+L I + + +
Sbjct: 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKF--LEKPVLELE 63
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
+ DL D V H A K+V S ++PL Y DN + LL + + G
Sbjct: 64 ERDLSD------------VRLVYHLASHKSVPRSFKQPLDYLDN-VDSGRHLLALCTSVG 110
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
+V S+ YG +P E+ PL +PY SK+ +E + R+ ++ ++R
Sbjct: 111 VPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVR 170
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
+FN G P P+ L+P + V G DG RD+ ++
Sbjct: 171 FFNVYG---------PGERPDALVPRLCANLLTRNEL--PVEG------DGEQRRDFTYI 213
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
D+ D +A + V N G+G+ SV +++ + + + RP +
Sbjct: 214 TDVVDKLVALAN-----RPLPSVVNFGSGQSLSVNDVIRILQAT-SPAAEVARKQPRPNE 267
Query: 300 AEIVYASTEKAERELNWKA-KYGIDE 324
A T R++ ++ GI+E
Sbjct: 268 ITEFRADTALQTRQIGERSGGIGIEE 293
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 4e-66
Identities = 55/336 (16%), Positives = 107/336 (31%), Gaps = 33/336 (9%)
Query: 5 ILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
ILV G G IG+ V L G K V+ ++ + F LD
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT--------------GGIKFITLD 47
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ ++ ++ DA+ H AG+ + + P + N+ GT +LE H +
Sbjct: 48 VSNRDEIDRAVEKYSIDAIFHLAGI-LSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEK 106
Query: 124 LVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+V S+ +G + +G +K+ E + + + + LRY
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYE-KFGLDVRSLRYP 165
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
+ +P + + AV R + +++ D
Sbjct: 166 GIISYKA-----EPTAGTTDYAVEIFYYAVKREK-YKCYL------APNRALPMMYMPDA 213
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR--PGDA 300
+ D V YN+ T + E+ + ++ + K R
Sbjct: 214 LKALVDLYEADRDKLVLRNGYNV-TAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAAT 272
Query: 301 EIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
+ +A E + +Y +D D + S+
Sbjct: 273 WPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 3e-63
Identities = 65/336 (19%), Positives = 124/336 (36%), Gaps = 32/336 (9%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKT--VVVDNLDNASEIAVAKVKELAGYQ---GNNM 57
+ IL+ GG G++GS+ K VV+D + + + + L ++ G
Sbjct: 11 QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG 70
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
D+ + L + FD + H A + ++ N + LLE+
Sbjct: 71 EVIAADINNPLDLRRLEKL-HFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIAR 127
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
+ K ++++SSA YG K P N YG SKL ++E + +
Sbjct: 128 SKKAK-VIYASSAGVYGNTKA-PNVVGKNESPENVYGFSKLCMDEFVLSHSNDN---VQV 182
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
LRYFN V G E + +++ + +F G +RD+
Sbjct: 183 GLRYFN-V----YGPREFYKEKTASMVLQLALGAMAFKEV--KLFE------FGEQLRDF 229
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR 296
+++ D+ ++ A+ + VYN+G + S E+V+ ++ G
Sbjct: 230 VYIEDVIQANVKAM----KAQKS-GVYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPY 284
Query: 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
+ A E +L++ Y ++ +D
Sbjct: 285 AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPH 320
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 5e-63
Identities = 78/343 (22%), Positives = 120/343 (34%), Gaps = 46/343 (13%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGS+ V L G + VVDNL + + K L + K D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-----KFVNLVDLNIAD-YMDKED 55
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ F +A+ H + E K DNN + LL
Sbjct: 56 FLIQIMAGEEFGD--VEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP- 110
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRS-DSEWKIILLRYF 182
+++SSA YG + +N YG SK +E R + +S+ + RYF
Sbjct: 111 FLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQI--VGFRYF 168
Query: 183 NPVGAHPSGKGEDPRG-----IPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
N V G E +G + TQ+ G P G RD++
Sbjct: 169 N-V----YGPREGHKGSMASVAFH----LNTQLNNGESP-KLFEG------SENFKRDFV 212
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK----IPLVKS 293
+V D+AD ++ L + V ++NLGTG+ S + A K IP
Sbjct: 213 YVGDVADVNLWFL----ENGVS-GIFNLGTGRAESFQAVADATLAYHKKGQIEYIP-FPD 266
Query: 294 GRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
+ A K + E + W +++
Sbjct: 267 KLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRD 309
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-61
Identities = 77/345 (22%), Positives = 124/345 (35%), Gaps = 46/345 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ I+V GG G+IGS+ V L G + VVDNL + + K L + K
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-----KFVNLVDLNIAD-YMDK 100
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D + F +A+ H + E K + DNN + LL
Sbjct: 101 EDFLIQIMAGEEFGD--VEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREI 156
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
+++SSA YG + +N +G SK +E R + + +I+ RY
Sbjct: 157 P-FLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPE-ANSQIVGFRY 214
Query: 182 FNPVGAHPSGKGEDPRG-----IPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
FN V G E +G + TQ+ G P G RD+
Sbjct: 215 FN-V----YGPREGHKGSMASVAFH----LNTQLNNGESP-KLFEG------SENFKRDF 258
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR 296
++V D+AD ++ L + V ++NLGTG+ S + A K ++
Sbjct: 259 VYVGDVADVNLWFL----ENGVS-GIFNLGTGRAESFQAVADATLAYHKK--GQIEYIPF 311
Query: 297 PGDAEIVY-----ASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
P + Y A K + E + W +++
Sbjct: 312 PDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRD 356
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 3e-60
Identities = 87/339 (25%), Positives = 137/339 (40%), Gaps = 43/339 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
N++V+GG G++GS+ V +LL G V VVDNL +A +I V + F +
Sbjct: 33 TNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHP--------AVRFSE 84
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-G 120
+ D A L + +D V H A S+ PL +NN T+ L E +
Sbjct: 85 TSITDDALLASLQDE--YDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKR 142
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMN------PYGRSKLFIEEICRDVHRS---D 171
K +V+S++ + ++ PY SK+F E H+
Sbjct: 143 LKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLP 202
Query: 172 SEWKIILLRYFNPVG----AHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226
+ R+ N G P + N+ P F+ + G +
Sbjct: 203 ----TVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPL--PLEN---- 252
Query: 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK 286
G RD+I V D+A+G IA G VYN+ +GK TS+ ++ + +G
Sbjct: 253 --GGVATRDFIFVEDVANGLIACAAD---GTPG-GVYNIASGKETSIADLATKINEITGN 306
Query: 287 KIPLVKSGRRPGD-AEIVYASTEKAERELNWKAKYGIDE 324
L + +RP D + + S EKA REL + A ID+
Sbjct: 307 NTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDD 345
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 2e-54
Identities = 56/337 (16%), Positives = 106/337 (31%), Gaps = 32/337 (9%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTF 59
M IL+IG G IG+ +L L G + V+ ++ + V N+ F
Sbjct: 1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVV-----------NSGPF 49
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
++ D +E + K + A L + + P +D N+ +L + A
Sbjct: 50 EVVNALDFNQIEHLVEVHKITDIYLMAAL-LSATAEKNPAFAWDLNMNSLFHVLNLAKAK 108
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGRSKLFIEEICRDVHRSDSEWKI-- 176
K + + SS +G T ++ + YG SK E C H + +
Sbjct: 109 KIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHN---IYGVDV 165
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
+RY + G + + ++ F
Sbjct: 166 RSIRYPGLISWSTPPGGGTTDYAVD----IFYKAIADKKY--ECFL------SSETKMPM 213
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR- 295
+++ D D I ++ + YNL T + I R
Sbjct: 214 MYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQ 273
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
+ D+ +A + +WK + ++ M +D
Sbjct: 274 KIADSWPASIDDSQAREDWDWKHTFDLESMTKDMIEH 310
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 4e-50
Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 33/259 (12%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M +LV G G +GS L ++ + D +D G +
Sbjct: 1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVD-------------LGAAEAHEEIV 47
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLP-YFDNNLTGTITLLEVMAAH 119
DL D A+ + D +IH G+ SV++P N+ G L E
Sbjct: 48 ACDLADAQAVHDLVKD--CDGIIHLGGV-----SVERPWNDILQANIIGAYNLYEAARNL 100
Query: 120 GCKNLVFSSSATAYGW-PKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
G +VF+SS G+ P+ E P + + YG SK F E++ + + + +
Sbjct: 101 GKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHK-FDIETLN 159
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQ-VAVGRRPALTVFGTDYSTKDGTVVRDYI 237
+R + + ++ M + + + V+G +
Sbjct: 160 IRIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYG------ASANTESW- 212
Query: 238 HVVDLADGHIAALRKLDDP 256
D D
Sbjct: 213 --WDNDKSAFLGWVPQDSS 229
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-43
Identities = 47/207 (22%), Positives = 73/207 (35%), Gaps = 28/207 (13%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
K +LV G G +G +L + + +L G N
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPL------------DPAGPNEECV 48
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPL-PYFDNNLTGTITLLEVMAAH 119
+ DL D A+ + AG D ++H G SV+KP N+ G L E AH
Sbjct: 49 QCDLADANAVNAMVAG--CDGIVHLGG-----ISVEKPFEQILQGNIIGLYNLYEAARAH 101
Query: 120 GCKNLVFSSSATAYGW-PKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
G +VF+SS G+ P+ + P + YG SK F E + R + + L
Sbjct: 102 GQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQ-ETAL 160
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMP 205
+R + + R +
Sbjct: 161 VRIGSCTPEP-----NNYRMLSTWFSH 182
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 5e-41
Identities = 68/339 (20%), Positives = 113/339 (33%), Gaps = 56/339 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
I + G G+I SH +L G+ + D K E FH +
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASDW----------KKNEHMTEDMFCDEFHLV 79
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQK-PLPYFDNNLTGTITLLEVMAAHGC 121
DLR V G D V + A +Q NN + ++E +G
Sbjct: 80 DLRVMENCLKVTEG--VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 122 KNLVFSSSATAYGWPKVVPCTEE-------FPLQAMNPYGRSKLFIEEICRDVHRSDSEW 174
K ++SSA Y K + T +P + + +G KL EE+C+ ++ D
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK-DFGI 196
Query: 175 KIILLRYFNPVGAHPSGKGEDPRG--IPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
+ + R+ N G P G + R F + ++G DG
Sbjct: 197 ECRIGRFHNIYG--PFGTWKGGREKAPAA----FCRKAQTSTDR-FEMWG------DGLQ 243
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
R + + + +G + + D E N+G+ + S+ EM KK+P+
Sbjct: 244 TRSFTFIDECVEGVLRLTKS-DFR----EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 293 S-------GRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
GR + +L W + E
Sbjct: 299 IPGPEGVRGRNS--------DNNLIKEKLGWAPNMRLKE 329
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 9e-41
Identities = 55/360 (15%), Positives = 102/360 (28%), Gaps = 74/360 (20%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
V+G G +G H + G+ ++ +A + +
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP-----------ECRVAE 64
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ D A LE G D VI AG ++ + L T
Sbjct: 65 MLDHAGLERALRGL--DGVIFSAGY--YPSRPRRWQEEVASALGQTNPFYAACLQARVPR 120
Query: 124 LVFSSSATAYG-WPKVVPCTEEFPL----QAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
+++ SA A P+ +P E + Y K ++E R+ R+ +++
Sbjct: 121 ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARNG--LPVVI 178
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
+G I +T + G + I
Sbjct: 179 GIPGMVLG---------ELDIGPTTGRVITAIGNGEMTHYVAGQRNV-----------ID 218
Query: 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV------- 291
+ G + AL + ++G E Y L G + ++ + G+ P
Sbjct: 219 AAEAGRGLLMALER---GRIG-ERYLLT-GHNLEMADLTRRIAELLGQPAPQPMSMAMAR 273
Query: 292 -----------KSGRRPGD--------AEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
SG+ P A + KA EL + + +D+ +W
Sbjct: 274 ALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDW 333
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 7e-39
Identities = 76/368 (20%), Positives = 131/368 (35%), Gaps = 62/368 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD------NLDNASEIAVAKVKELAGYQGNN 56
+L+ GG G++GS+ L G +V D DN ++ N
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLG----------N 51
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
F D+R+K + + D+ H AG A+ S+ P F+ N+ GT+ LLE +
Sbjct: 52 FEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAV 111
Query: 117 AAHGCKN-LVFSSSATAYG----------------WPKVVPCTEEFPLQAMNPYGRSKLF 159
+ +++SS+ YG K E L +PYG SK
Sbjct: 112 RQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGA 171
Query: 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNN---LMPFVTQVAVGRRP 216
++ D R ++ R+ + G R + + Q AV +
Sbjct: 172 ADQYMLDYARI-FGLNTVVFRHSSMYG---------GRQFATYDQGWVGWFCQKAVEIKN 221
Query: 217 A----LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG-- 270
T+ G +G VRD +H D+ + AL + G +N+G
Sbjct: 222 GINKPFTISG------NGKQVRDVLHAEDMISLYFTALANV-SKIRG-NAFNIGGTIVNS 273
Query: 271 TSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYAS-TEKAERELNWKAKYGIDEMCRDQ 329
S+LE+ E + R D + V+ + +K ++W K + +
Sbjct: 274 LSLLELFKLLEDYCNIDMRFTNLPVRESD-QRVFVADIKKITNAIDWSPKVSAKDGVQKM 332
Query: 330 WNWASKNP 337
++W S
Sbjct: 333 YDWTSSIL 340
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-34
Identities = 56/349 (16%), Positives = 116/349 (33%), Gaps = 52/349 (14%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +L++G G+IG H ++L V ++ ++ +L + M F +
Sbjct: 25 KKVLILGVNGFIGHHLSKRILETTDWEVFGMDM------QTDRLGDLVKH--ERMHFFEG 76
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ K D ++ + V++PL F+ + + ++ +G
Sbjct: 77 DITINKEWVEYHVK-KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKH 135
Query: 123 NLVFSSSATAYGW---PKVVPCTEEFPLQAMNP----YGRSKLFIEEICRDVHRSDSEWK 175
+ S+S YG + P +N Y SK ++ + +
Sbjct: 136 LVFPSTSE-VYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFT 194
Query: 176 IILLRYFNPVG----AHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231
+ R FN +G + + K R + F+ V +++ G+
Sbjct: 195 LF--RPFNWIGPGLDSIYTPKEGSSRVVTQ----FLGH-IVRGEN-ISLVD------GGS 240
Query: 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG-TSVLEMVAAFEKASGKKIPL 290
R + +V D + + + G ++YN+G SV E+ + + +
Sbjct: 241 QKRAFTYVDDGISALMKIIENSNGVATG-KIYNIGNPNNNFSVRELANKMLELAAEFPEY 299
Query: 291 VKSGRRPGDAEIVYA---------------STEKAERELNWKAKYGIDE 324
S +R E E +EL W ++ D+
Sbjct: 300 ADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDD 348
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-32
Identities = 56/348 (16%), Positives = 115/348 (33%), Gaps = 51/348 (14%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+L++G G+IG+H +LL + V LD S+ + + + F + D
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYG--LDIGSD----AISRFLNH--PHFHFVEGD 53
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ + K D V+ + E + PL F+ + + ++ + +
Sbjct: 54 ISIHSEWIEYHVK-KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR- 111
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNP-------YGRSKLFIEEICRDVHRSDSEWKI 176
++F S++ YG E+ + P Y SK ++ + + +
Sbjct: 112 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG-LQF 170
Query: 177 ILLRYFNPVG----AHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232
L R FN +G + + R I + V P + + G
Sbjct: 171 TLFRPFNWMGPRLDNLNAARIGSSRAITQ----LILN-LVEGSP-IKLID------GGKQ 218
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG-TSVLEMVAAFEKASGKKIPLV 291
R + + D + + + + + E+ N+G + S+ E+ + K
Sbjct: 219 KRCFTDIRDGIEA-LYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRH 277
Query: 292 KSGRRPGDAEIVYAS---------------TEKAERELNWKAKYGIDE 324
G + +S A R L+W+ K + E
Sbjct: 278 HFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE 325
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 3e-32
Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 68/288 (23%)
Query: 4 NILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
NI++ G G++G + L + V E+
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEEL--------------------- 40
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
++AL K D ++H AG+ + + N++ +L+++ + K
Sbjct: 41 ----ESALL------KADFIVHLAGVN----RPEHDKEFSLGNVSYLDHVLDILTRNTKK 86
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+ SS+ NPYG SKL E++ R+ + + R+
Sbjct: 87 PAILLSSSIQAT--------------QDNPYGESKLQGEQLLREYAEE-YGNTVYIYRWP 131
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
N G K I F ++A + V D V +V D+
Sbjct: 132 NLFG--KWCKPNYNSVIAT----FCYKIARNE--EIQVN-------DRNVELTLNYVDDI 176
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 290
A+ P + V + ++ E+V K ++
Sbjct: 177 VAEIKRAIEG--TPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDR 222
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-29
Identities = 82/331 (24%), Positives = 134/331 (40%), Gaps = 42/331 (12%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
K IL+ GG G++GSH +L++ G++ VVDN + V+ G+ N
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK---RNVEHWIGH--ENFELI 80
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+ + +EV D + H A + + P+ N GT+ +L + G
Sbjct: 81 NHDVVEPLYIEV-------DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG 133
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP------YGRSKLFIEEICRDVHRS-DSE 173
+ L+ S+S YG P+V P +E++ +NP Y K E +C + E
Sbjct: 134 ARLLLASTS-EVYGDPEVHPQSEDYWGH-VNPIGPRACYDEGKRVAETMCYAYMKQEGVE 191
Query: 174 WKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233
++ R FN G P D R + N F+ Q G LTV+G G+
Sbjct: 192 VRVA--RIFNTFG--PRMHMNDGRVVSN----FILQALQGE--PLTVYG------SGSQT 235
Query: 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 293
R + +V DL +G L L + V NLG + ++LE + G +
Sbjct: 236 RAFQYVSDLVNG----LVALMNSNVS-SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFL 290
Query: 294 GRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
D + +KA+ L W+ ++E
Sbjct: 291 SEAQDDPQKRKPDIKKAKLMLGWEPVVPLEE 321
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-27
Identities = 63/332 (18%), Positives = 117/332 (35%), Gaps = 27/332 (8%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K + V G G+ G L L G V +L + ++ + + + M
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPTVPSLFETARV----ADGMQSEIG 64
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+RD+ L + + V H A V S +P+ + N+ GT+ LLE + G
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 124
Query: 123 N-LVFSSSATAYGWPKVV-PCTEEFPLQAMNPYGRSKLFIEEICRDVHRS---DSEWKII 177
+V +S Y + + E + +PY SK E + S + +
Sbjct: 125 KAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 184
Query: 178 LLRYFNPVGAHPSGKGE-DPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
+ G G+ I +++ Q ++ +R +
Sbjct: 185 GTAVATVRAGNVIGGGDWALDRIVPDILRAFEQ------------SQPVIIRNPHAIRPW 232
Query: 237 IHVVDLADGHIAALRKL-DDPKVGCEVYNLGTGKG--TSVLEMVAAFEKASGKKI-PLVK 292
HV++ G++ +KL D E +N G T V +V K G+ +
Sbjct: 233 QHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLD 292
Query: 293 SGRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
P +A + KA+ +L W ++ ++
Sbjct: 293 GNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNT 324
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 3e-23
Identities = 76/359 (21%), Positives = 116/359 (32%), Gaps = 96/359 (26%)
Query: 3 KNILVIGGVGYIGSHTVLQLL--LGGYKTVVVD------NLDNASEIAVAKVKELAGYQG 54
KNI+V GG G+IGS+ V + V+D N N L G
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN-----------LEAILG 53
Query: 55 NNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE 114
+ + D+ D ++ + A K DA++H+A S+ P P+ N GT TLLE
Sbjct: 54 DRVELVVGDIADAELVDKLAA--KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLE 111
Query: 115 VMAAHGCK-----------NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEI 163
+ + +L +G T E +PY +K + I
Sbjct: 112 AARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLI 171
Query: 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIP-------NN---------LMPFV 207
+ RS + G+ NN +P
Sbjct: 172 VKAWVRS----------F----------------GVKATISNCSNNYGPYQHIEKFIPRQ 205
Query: 208 TQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRK-LDDPKVGCEVYNLG 266
+ ++G +G VRD+IH D H + L ++G E Y +G
Sbjct: 206 ITNILAGIK-PKLYG------EGKNVRDWIHTND----HSTGVWAILTKGRMG-ETYLIG 253
Query: 267 TG---KGTSVLEMVAAFEKASGKKIPLVKSGRRPG-DAEIVYA-STEKAERELNWKAKY 320
VLE++ V R G D YA K EL W ++
Sbjct: 254 ADGEKNNKEVLELILEKMGQPKDAYDHVTD--RAGHDLR--YAIDASKLRDELGWTPQF 308
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 7e-23
Identities = 101/347 (29%), Positives = 150/347 (43%), Gaps = 69/347 (19%)
Query: 2 AKNILVIGGVGYIGSHTVLQLL--LGGYKTVVVD------NLDNASEIAVAKVKELAGYQ 53
A NILV GG G+IGS+ V +L YK + D NL+N I
Sbjct: 24 AMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQ----------D 73
Query: 54 GNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLL 113
N F K ++++ LE V +++FA V S++ P+P++D N+ GT+TLL
Sbjct: 74 HPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLL 133
Query: 114 EVMAAHGCKNLVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDS 172
E++ + LV S+ YG K TEE PL +PY SK + I +++
Sbjct: 134 ELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADMIALAYYKT-- 191
Query: 173 EWKIILLRYFNPV---------GAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223
Y PV G P P L+P + A+ + L ++G
Sbjct: 192 --------YQLPVIVTRCSNNYG---------PYQYPEKLIPLMVTNALEGKK-LPLYG- 232
Query: 224 DYSTKDGTVVRDYIHVVDLADGHIAALRK-LDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
DG VRD++HV D H +A+ L +VG EVYN+G + +E+V
Sbjct: 233 -----DGLNVRDWLHVTD----HCSAIDVVLHKGRVG-EVYNIGGNNEKTNVEVVEQIIT 282
Query: 283 ASGKKIPL---VKSGRRPG-DAEIVYA-STEKAERELNWKAKYGIDE 324
GK V R G D YA + EK + E +W+ KY ++
Sbjct: 283 LLGKTKKDIEYVTD--RLGHDRR--YAINAEKMKNEFDWEPKYTFEQ 325
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 3e-22
Identities = 95/356 (26%), Positives = 137/356 (38%), Gaps = 90/356 (25%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKT------VVVD------NLDNASEIAVAKVKELAG 51
+LV GG G+IGSH V QLL G Y +V+D N N LA
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN-----------LAP 50
Query: 52 YQGN-NMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTI 110
+ + F D+RD L G DA++HFA V S+ + + N+ GT
Sbjct: 51 VDADPRLRFVHGDIRDAGLLARELRG--VDAIVHFAAESHVDRSIAGASVFTETNVQGTQ 108
Query: 111 TLLEVMAAHGCKNLVFSSSATAYG------WPKVVPCTEEFPLQAMNPYGRSKLFIEEIC 164
TLL+ G +V S+ YG W TE PL+ +PY SK + +
Sbjct: 109 TLLQCAVDAGVGRVVHVSTNQVYGSIDSGSW------TESSPLEPNSPYAASKAGSDLVA 162
Query: 165 RDVHRSDSEWKIILLRYFNPV---------GAHPSGKGEDPRGIPNNLMP-FVTQVAVGR 214
R HR+ Y V G P P L+P FVT + G
Sbjct: 163 RAYHRT----------YGLDVRITRCCNNYG---------PYQHPEKLIPLFVTNLLDGG 203
Query: 215 RPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRK-LDDPKVGCEVYNLGTGKGTSV 273
L ++G DG VR+++H D H + L + G E+Y++G G +
Sbjct: 204 T--LPLYG------DGANVREWVHTDD----HCRGIALVLAGGRAG-EIYHIGGGLELTN 250
Query: 274 LEMVAAFEKASGKK---IPLVKSGRRPG-DAEIVYA-STEKAERELNWKAKYGIDE 324
E+ + G + V R G D Y+ K EREL ++ + +
Sbjct: 251 RELTGILLDSLGADWSSVRKVAD--RKGHDLR--YSLDGGKIERELGYRPQVSFAD 302
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-21
Identities = 71/348 (20%), Positives = 134/348 (38%), Gaps = 65/348 (18%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
+ L+ G G++G + L + V + +N +++ N+
Sbjct: 11 GSMRALITGVAGFVGKYLANHLTEQNVE-VFGTSRNNEAKL-------------PNVEMI 56
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
LD+ D ++ V + K D + H A +V +S F N+ GT+ +L+ +
Sbjct: 57 SLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSN 116
Query: 121 --CKNLVFSSSATAYG--WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
C+ L SS YG P+ P +EE L+ M+PYG SK + + R ++ + +
Sbjct: 117 LDCRILTIGSSE-EYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKA---YGM 172
Query: 177 -----ILLRYFNPVGAHPS-GKGEDPRGIPNNLMPFVT-----QVA---VGRRPALTVFG 222
FN H G+ FVT Q+ + ++ + G
Sbjct: 173 DIIHTRT---FN----HIGPGQSLG----------FVTQDFAKQIVDIEMEKQEPIIKVG 215
Query: 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEK 282
+ +D T VRD + A K G +VYN+ +G GT + +++
Sbjct: 216 NLEAVRDFTDVRDIVQ---------AYWLLSQYGKTG-DVYNVCSGIGTRIQDVLDLLLA 265
Query: 283 ASGKKIPLVKSGR--RPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
+ KI + RP + + S ++ + WK + +++ +
Sbjct: 266 MANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEKSLFE 313
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 2e-20
Identities = 88/367 (23%), Positives = 131/367 (35%), Gaps = 89/367 (24%)
Query: 4 NILVIGGVGYIGSHTVLQLL-LGGYKTVVVD------NLDNASEIAVAKVKELAGYQGNN 56
IL+ GG G+IGS V ++ V +D NL++ S+I+ + N
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDIS----------ESNR 51
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
F D+ D A + +F + DAV+H A V S+ P + + N+ GT LLEV
Sbjct: 52 YNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVA 111
Query: 117 AAHGCKNL----------------VFSS---SATAYGWPKVVPCTEEFPLQAMNPYGRSK 157
+ V+ + TE +PY SK
Sbjct: 112 RKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASK 171
Query: 158 LFIEEICRDVHRSDSEWKIILLRYFNPV---------GAHPSGKGEDPRGIPNNLMPFVT 208
+ + R R+ Y P G P P L+P V
Sbjct: 172 ASSDHLVRAWRRT----------YGLPTIVTNCSNNYG---------PYHFPEKLIPLVI 212
Query: 209 QVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRK-LDDPKVGCEVYNLGT 267
A+ +P L ++G G +RD+++V D H AL + + K G E YN+G
Sbjct: 213 LNALEGKP-LPIYG------KGDQIRDWLYVED----HARALHMVVTEGKAG-ETYNIGG 260
Query: 268 GKGTSVLEMVAAFEKASGKKIPLVKSGR--------RPG-DAEIVYA-STEKAERELNWK 317
L++V + +P S R RPG D YA K REL WK
Sbjct: 261 HNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRR--YAIDAGKISRELGWK 318
Query: 318 AKYGIDE 324
+
Sbjct: 319 PLETFES 325
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 89.8 bits (222), Expect = 2e-20
Identities = 49/337 (14%), Positives = 92/337 (27%), Gaps = 44/337 (13%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ L++G G IG+ L L VA+ A ++ N + + +
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKV------YGVARRTRPAWHEDNPINYVQ 54
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-- 119
D+ D + + V H + + N +L+ + +
Sbjct: 55 CDISDPDDSQAKLSP--LTDVTHVFY--VTWANRSTEQENCEANSKMFRNVLDAVIPNCP 110
Query: 120 ---------GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRS 170
G K+ + + P TE+ P Y +E+I +
Sbjct: 111 NLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRL---KYMNFYYDLEDIMLEEVEK 167
Query: 171 DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR---PALTVFGTDYST 227
+ R N G P NL+ + A + L G +
Sbjct: 168 KEGLTWSVHRPGNIFGFSP--------YSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAW 219
Query: 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK 287
D +A+ HI A DP E +N+ G + G +
Sbjct: 220 DG---YSDCSDADLIAEHHIWAAV---DPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVE 273
Query: 288 IPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
+ G +++ E + G+
Sbjct: 274 CGEYEEGVDLKLQDLMKGKEPVWEE---IVRENGLTP 307
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 5e-20
Identities = 77/361 (21%), Positives = 130/361 (36%), Gaps = 99/361 (27%)
Query: 2 AKNILVIGGVGYIGSHTVLQLL--LGGYKTVVVD------NLDNASEIAVAKVKELAGYQ 53
+ +LV GG+G+IGS+ + +L ++ + +D N N ++
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLE----------D 52
Query: 54 GNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLL 113
TF K D+ D ++ + K D V+H A V S+ P + +N+ GT TLL
Sbjct: 53 DPRYTFVKGDVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLL 110
Query: 114 EVMAAHGCKNL--------VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICR 165
E + + V+ TE L +PY +K + +
Sbjct: 111 ESIRRENPEVRFVHVSTDEVYGDILKGS-------FTENDRLMPSSPYSATKAASDMLVL 163
Query: 166 DVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIP-------NN---------LMPFVTQ 209
R+ Y + NN L+P
Sbjct: 164 GWTRT----------Y----------------NLNASITRCTNNYGPYQFPEKLIPKTII 197
Query: 210 VAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRK-LDDPKVGCEVYNLGTG 268
A + ++G G VRD+++V D H+ A+ L + E+YN+ G
Sbjct: 198 RASLGLK-IPIYG------TGKNVRDWLYVED----HVRAIELVLLKGESR-EIYNISAG 245
Query: 269 ---KGTSVLEMVAAFEKASGKKIPLVKSGRRPG-DAEIVYA-STEKAERELNWKAKYGID 323
V++++ + I LV+ RPG D Y+ + K R+L W+ KY D
Sbjct: 246 EEKTNLEVVKIILRLMGKGEELIELVED--RPGHDLR--YSLDSWKITRDLKWRPKYTFD 301
Query: 324 E 324
E
Sbjct: 302 E 302
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 9e-19
Identities = 39/251 (15%), Positives = 72/251 (28%), Gaps = 53/251 (21%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
K I++IG G++GS + + L G++ T VV + + + ++ K
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI------------ENEHLKVKK 52
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+ + V G DAVI + + +T+++ + G
Sbjct: 53 ADVSSLDEVCEVCKG--ADAVISAFNPGWNNPDIYDE------TIKVYLTIIDGVKKAGV 104
Query: 122 KNLVF-SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRD-VHRSDSEWKIILL 179
+ + + + P + + N K E + + +W
Sbjct: 105 NRFLMVGGAGSLFIAPGLRLM--DSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFF-- 160
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
+P G R G D D +I V
Sbjct: 161 ---SPAADMRPGV----------------------RTGRYRLGKDDMIVDIV-GNSHISV 194
Query: 240 VDLADGHIAAL 250
D A I L
Sbjct: 195 EDYAAAMIDEL 205
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 6e-18
Identities = 41/321 (12%), Positives = 91/321 (28%), Gaps = 59/321 (18%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTF 59
M+ + ++I G G +G +L G++ T + + +
Sbjct: 1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPA---------------GVQT 45
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
D+ L + + + +++ + Y + + G L +
Sbjct: 46 LIADVTRPDTLASI-VHLRPEILVYCVAASEYSDE-----HYRLSYVEGLRNTLSALEGA 99
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
+++ F SS YG E+ P A + G+ L E + + +L
Sbjct: 100 PLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEALLAA-------YSSTIL 152
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
R+ G GR + T + IH
Sbjct: 153 RFSGIYGP-------------------------GRLRMIRQAQTPEQWPARNAWTNRIHR 187
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD 299
D A +++ +Y + + V +++ G P + G+
Sbjct: 188 DDGAAFIAYLIQQRSHAVPE-RLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGN 246
Query: 300 AEIVYASTEKAERELNWKAKY 320
++ S + ++ Y
Sbjct: 247 KKL---SNARL-LASGYQLIY 263
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-16
Identities = 61/358 (17%), Positives = 110/358 (30%), Gaps = 70/358 (19%)
Query: 5 ILVIGGVGYIGSHTVLQLLLGGYKTVV--VDNLDNASEIAVAKVKEL--AGYQGNNMTFH 60
+LV G G++ SH V QLL GY V + A +++ A Y G T
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKL-----ANLQKRWDAKYPGRFETAV 67
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNN-------LTGTITLL 113
D+ + A + V G V H A + + + + GT+ L
Sbjct: 68 VEDMLKQGAYDEVIKGA--AGVAHIAS----------VVSFSNKYDEVVTPAIGGTLNAL 115
Query: 114 E-VMAAHGCKNLVFSSSATA----YGWPKVVPCTEE----------------FPLQAMNP 152
A K V +SS + + + E+ P +++
Sbjct: 116 RAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWV 175
Query: 153 YGRSKLFIEEICRD-VHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA 211
Y SK E + + + + + P G DP + ++ +
Sbjct: 176 YAASKTEAELAAWKFMDENKPHFTLNAV---LPNYT--IGTIFDPETQSGSTSGWMMSLF 230
Query: 212 VGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271
G + Y+ VD+ H+ L P++ GT
Sbjct: 231 NGEVSPALAL---------MPPQYYVSAVDIGLLHLGC---LVLPQIERRRV-YGTAGTF 277
Query: 272 SVLEMVAAF-EKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
++A F + K P + ++ A + + + L I+E +D
Sbjct: 278 DWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKD 335
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 6e-16
Identities = 58/355 (16%), Positives = 112/355 (31%), Gaps = 74/355 (20%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
+ V GG G++GS + LL GY T + + + + V+ + L G + F
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD--VSFLTNLPGASE-KLHFF 58
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNN---------LTGTIT 111
DL + + G + H A P+ + + + G +
Sbjct: 59 NADLSNPDSFAAAIEG--CVGIFHTAS----------PIDFAVSEPEEIVTKRTVDGALG 106
Query: 112 LLE-VMAAHGCKNLVFSSSATA--YGWPKVVPCTEE---------FPLQAMNPYGRSKLF 159
+L+ + + K +++SS +A + E Y SK
Sbjct: 107 ILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTL 166
Query: 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSG-KGEDPRGIPNNLMPFVTQVAVGRRPAL 218
E+ + + + V G + + + +G++ +
Sbjct: 167 AEK---------AVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI 217
Query: 219 TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVG----CEVYNLGTGKGTSVL 274
G +HV D+A HI L++ G C + +
Sbjct: 218 -----------GVTRFHMVHVDDVARAHIYL---LENSVPGGRYNC------SPFIVPIE 257
Query: 275 EMVAAF-EKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
EM K +I V + A + +T+K + + KY I++M D
Sbjct: 258 EMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKL-VDAGFDFKYTIEDMFDD 311
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 8e-16
Identities = 66/355 (18%), Positives = 119/355 (33%), Gaps = 75/355 (21%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVV--VDNLDNASEIAVAKVKELAGYQGNNMTFH 60
+ + V G G+IGS V++LL GY TV V + N + V + +L + ++T
Sbjct: 6 ETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPTNVKK--VKHLLDLPKAET-HLTLW 61
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNN---------LTGTIT 111
K DL D+ + + G V H A P+ + + + G +
Sbjct: 62 KADLADEGSFDEAIKG--CTGVFHVAT----------PMDFESKDPENEVIKPTIEGMLG 109
Query: 112 LLE-VMAAHGCKNLVFSSSATA--YGWPKVVPCTEEF---------PLQAMNPYGRSKLF 159
+++ AA + LVF+SSA ++ E Y SK
Sbjct: 110 IMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTL 169
Query: 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSG-KGEDPRGIPNNLMPFVTQVAVGRRPAL 218
E+ WK + + P+ G + G
Sbjct: 170 AEQAA---------WKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHY 220
Query: 219 TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVG----CEVYNLGTGKGTSVL 274
++ ++H+ DL + HI PK C + +L
Sbjct: 221 SIIRQ----------GQFVHLDDLCNAHIYLFEN---PKAEGRYIC------SSHDCIIL 261
Query: 275 EMVAAF-EKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
++ EK IP + + + V S++K +L ++ KY +++M
Sbjct: 262 DLAKMLREKYPEYNIP-TEFKGVDENLKSVCFSSKKL-TDLGFEFKYSLEDMFTG 314
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-15
Identities = 50/312 (16%), Positives = 90/312 (28%), Gaps = 62/312 (19%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
IL++G G IG H V + G T + + K + + YQ + +
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEG 62
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D L D VI AG + + +++ + G
Sbjct: 63 DINDHETLVKAIKQ--VDIVICAAGRLLIE---------------DQVKIIKAIKEAGNV 105
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
F S +G + ++ + K I + + + F
Sbjct: 106 KKFFPSE---FG----LDVDRHDAVEPVRQVFEEKASIRRVIEA---EGVPYTYLCCHAF 155
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
+ + Q+ P V DG V Y+ D+
Sbjct: 156 -----------------TGYFLRNLAQLDATDPPRDKVVILG----DGNVKGAYVTEADV 194
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEI 302
I A D + V+ + E++A +EK GK + E
Sbjct: 195 GTFTIRAAN--DPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTL------------EK 240
Query: 303 VYASTEKAEREL 314
Y S E+ +++
Sbjct: 241 TYVSEEQVLKDI 252
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-15
Identities = 69/357 (19%), Positives = 123/357 (34%), Gaps = 72/357 (20%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVV--VDNLDNASEIAVAKVKELAGYQGNNMTFH 60
K V+GG G++ S V LL GY V V + DN + V+ + EL ++
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDPDNQKK--VSHLLELQE--LGDLKIF 64
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNN---------LTGTIT 111
+ DL D+ + E AG D V H A + P+ + + + G +
Sbjct: 65 RADLTDELSFEAPIAG--CDFVFHVA-------T---PVHFASEDPENDMIKPAIQGVVN 112
Query: 112 LLE-VMAAHGCKNLVFSSSATA----YGWPKVVPCTEEF--PLQ-------AMNPYGRSK 157
+++ A K ++ +SSA A + E+ ++ Y SK
Sbjct: 113 VMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASK 172
Query: 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSG-KGEDPRGIPNNLMPFVTQVAVGRRP 216
E+ + WK + + P+ G + + + G
Sbjct: 173 TLAEK---------AAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEF 223
Query: 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVG----CEVYNLGTGKGTS 272
+ + + HV D+ HI K C TS
Sbjct: 224 ---LINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEK---ESASGRYIC------CAANTS 271
Query: 273 VLEMVAAF-EKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
V E+ ++ K+P G P ++++ S+EK + + KYGI+E+ +
Sbjct: 272 VPELAKFLSKRYPQYKVP-TDFGDFPPKSKLII-SSEKL-VKEGFSFKYGIEEIYDE 325
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 49/259 (18%), Positives = 75/259 (28%), Gaps = 68/259 (26%)
Query: 1 MA-KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMT 58
MA K I + G G G T+ Q + GY+ TV+V + + G
Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVG------- 53
Query: 59 FHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA 118
D+ A ++ AG DAVI +G G ++ M A
Sbjct: 54 ----DVLQAADVDKTVAG--QDAVIV-----LLGTRNDLSPTTVM--SEGARNIVAAMKA 100
Query: 119 HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
HG +V +SA P VP + + + ++ R+ S ++ +
Sbjct: 101 HGVDKVVACTSAFLLWDPTKVP-------PRLQAVTDDHIRMHKVLRE---SGLKYVAV- 149
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
P G+ P V DG I
Sbjct: 150 ---------MPPHIGDQPL---------TGAYTVT--------------LDGRGPSRVIS 177
Query: 239 VVDLADGHIAALRKLDDPK 257
DL LR L +
Sbjct: 178 KHDLGH---FMLRCLTTDE 193
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 67/362 (18%), Positives = 130/362 (35%), Gaps = 57/362 (15%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
+L++G G+IG+H +LL + V LD S+ + + + F
Sbjct: 314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYG--LDIGSD----AISRFLNH--PHFHFV 365
Query: 61 KLDLR-DKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
+ D+ +E K D V+ + E + PL F+ + + ++ +
Sbjct: 366 EGDISIHSEWIEYHVK--KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY 423
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP-------YGRSKLFIEEICRDVHRSDS 172
K ++F S++ YG E+ + P Y SK ++ + +
Sbjct: 424 R-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 482
Query: 173 EWKIILLRYFNPVGAH----PSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228
+ L R FN +G + + R I + + G + +
Sbjct: 483 -LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQ----LILNLVEGS--PIKLID------ 529
Query: 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGC--EVYNLGTGKG-TSVLE----MVAAFE 281
G R + D+ DG A R +++ C E+ N+G + S+ E ++A+FE
Sbjct: 530 GGKQKRCF---TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFE 586
Query: 282 KASGKKIPLVKSGRRPGDAEIVYA-----------STEKAERELNWKAKYGIDEMCRDQW 330
K + +G R ++ Y S A R L+W+ K + E +
Sbjct: 587 KHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETL 646
Query: 331 NW 332
++
Sbjct: 647 DF 648
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 4e-14
Identities = 49/323 (15%), Positives = 98/323 (30%), Gaps = 66/323 (20%)
Query: 1 MA--KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMT 58
M +L++GG GYIG V + G+ T V+ + KV+ L ++
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVL--FRPEVVSNIDKVQMLLYFKQLGAK 58
Query: 59 FHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA 118
+ L D L D VI + +++ + L+E +
Sbjct: 59 LIEASLDDHQRLVDALKQ--VDVVISALAGGVL-----------SHHILEQLKLVEAIKE 105
Query: 119 HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
G S +G + P E LQ + K + + + +
Sbjct: 106 AGNIKRFLPSE---FG---MDPDIMEHALQPGSITFIDKRKVRRAIEA---ASIPYTYVS 156
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPAL---TVFGTDYSTKDGTVVRD 235
F + Q+ P ++G DG V
Sbjct: 157 SNMF-----------------AGYFAGSLAQLDGHMMPPRDKVLIYG------DGNVKGI 193
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
++ D+ I ++ D + +Y S E++ +E+ S + +
Sbjct: 194 WVDEDDVGTYTIKSID--DPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNL------- 244
Query: 296 RPGDAEIVYASTEKAERELNWKA 318
+ +Y S++ ++ K+
Sbjct: 245 -----DKIYISSQDFLADMKDKS 262
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-13
Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 67/281 (23%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTF 59
+LV+G G + + + +L G++ +V N + E+ ++
Sbjct: 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVV-------- 71
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
+L + FA DAV+ AG + + +L G I ++
Sbjct: 72 --ANLEE--DFSHAFAS--IDAVVFAAG--SGPHT--GADKTILIDLWGAIKTIQEAEKR 121
Query: 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
G K + SS + M Y +K ++ + RS ++ I+
Sbjct: 122 GIKRFIMVSSVGTV--------DPDQGPMNMRHYLVAKRLADDE---LKRSSLDYTIV-- 168
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
P + G + + + I
Sbjct: 169 --------RPGPLSNEEST-----------------------GKVTVSPHFSEITRSITR 197
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAF 280
D+A +D + + + G T + ++V
Sbjct: 198 HDVAK---VIAELVDQQHTIGKTFEVLNGD-TPIAKVVEQL 234
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-13
Identities = 47/295 (15%), Positives = 83/295 (28%), Gaps = 57/295 (19%)
Query: 1 MA--KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMT 58
M IL+IG GYIG H L G+ T ++ AS K + L ++ +
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS-NSEKAQLLESFKASGAN 59
Query: 59 FHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA 118
+ D A+L D VI G + + +++ +
Sbjct: 60 IVHGSIDDHASLVEAVKN--VDVVISTVGSLQIE---------------SQVNIIKAIKE 102
Query: 119 HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
G F S +G ++ K + + +
Sbjct: 103 VGTVKRFFPSE---FG----NDVDNVHAVEPAKSVFEVKAKVRRAIE---AEGIPYTYVS 152
Query: 179 LRYF--NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
F + + P R + + G DG +
Sbjct: 153 SNCFAGYFLRSLAQAGLTAP-----------------PRDKVVILG------DGNARVVF 189
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
+ D+ I A+ D + +Y S+ E+VA +EK K +
Sbjct: 190 VKEEDIGTFTIKAVD--DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKA 242
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 1e-12
Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 51/290 (17%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+L+ G G+IG L T + L + +K K +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPTYI---LARPGPRSPSKAKIFKALEDKGAIIVYG 67
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+ ++ A+E + + D V+ G +++ + Q L++ M A G
Sbjct: 68 LINEQEAMEKILKEHEIDIVVSTVGGESILD--QIA-------------LVKAMKAVGTI 112
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
S P++ R K + ++ + S + I
Sbjct: 113 KRFLPSEFG-------HDVNRADPVEPGLNMYREKRRVRQLVEE---SGIPFTYICCNSI 162
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
NN+ P ++G DG V ++ D+
Sbjct: 163 ASW------------PYYNNIHPSEVLPPTDF---FQIYG------DGNVKAYFVAGTDI 201
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
+ + D + V+ + ++ E+ + +EK G+ +P V
Sbjct: 202 GKFTMKTVD--DVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVT 249
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-12
Identities = 42/257 (16%), Positives = 69/257 (26%), Gaps = 57/257 (22%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
I V+G G GS V + G++ VV + A++ A V L
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATV-------------ATL 48
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
E DAV+ + +L L+ ++
Sbjct: 49 VKEPLVLTEADLDS--VDAVVDALSVPWGS-------GRGYLHLDFATHLVSLLRNSDTL 99
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNP--YGRSKLFIEEICRDVHRSDSEWKIILLR 180
+ SA+ P +FP A + Y + E ++ W
Sbjct: 100 AVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNW-----I 154
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
+P A PSG G D + +I
Sbjct: 155 GISPSEAFPSGPATSYV-----------------------AGKDTLLVGED-GQSHITTG 190
Query: 241 DLADGHIAALRKLDDPK 257
++A A L +L+ P
Sbjct: 191 NMAL---AILDQLEHPT 204
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 31/176 (17%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
I ++G G +G + L Y+ ++ + N+
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYN-------------NVKAVHF 48
Query: 63 DL-RDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+ + G DA+I+ +G + G+S+ K +L G + L++
Sbjct: 49 DVDWTPEEMAKQLHG--MDAIINVSG--SGGKSLLKV------DLYGAVKLMQAAEKAEV 98
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
K + S+ + K + A+ Y +K F + ++ ++ II
Sbjct: 99 KRFILLSTIFSLQPEKWIG----AGFDALKDYYIAKHFADLYL--TKETNLDYTII 148
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-11
Identities = 45/302 (14%), Positives = 80/302 (26%), Gaps = 72/302 (23%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+LV G G G +L G K V + + + G
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAK---------GLVRSAQGKEKIGGEADVFIG 55
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAG-------------LKAVGESVQKPLPYFDNNLTGT 109
D+ D ++ F G DA++ + + G
Sbjct: 56 DITDADSINPAFQG--IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQ 113
Query: 110 ITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN--PYGRSKLFIEEICRDV 167
++ G K++V S + PL + K E+ D
Sbjct: 114 KNQIDAAKVAGVKHIVVVGSMGGTNP--------DHPLNKLGNGNILVWKRKAEQYLAD- 164
Query: 168 HRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227
S + + II G + + R + T
Sbjct: 165 --SGTPYTII----------RAGG--------------LLDKEGGVRELLVGKDDELLQT 198
Query: 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK---GTSVLEMVAAFEKAS 284
TV R D+A+ I A L + + ++LG+ T + A F + +
Sbjct: 199 DTKTVPRA-----DVAEVCIQA---LLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 250
Query: 285 GK 286
+
Sbjct: 251 SR 252
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 9e-11
Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 34/177 (19%)
Query: 3 KNILVIGGVGYIGSHTVLQLLL-GGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
KN+L++G G I H + QL K T+ + + + G
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMG--------- 74
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+ + AAL+ G D V ++ +++ M A
Sbjct: 75 --DVLNHAALKQAMQGQ--DIVYANLT--------------GEDLDIQANSVIAAMKACD 116
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
K L+F S Y +V E+ + + + + S E+ I+
Sbjct: 117 VKRLIFVLSLGIY--DEVPGKFVEWNNAVIGEPLKPFRRAADA---IEASGLEYTIL 168
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 53/293 (18%), Positives = 83/293 (28%), Gaps = 67/293 (22%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M IL+ GG GYIG+H V L G+ T V + +K L +Q
Sbjct: 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVF------TRPNSSKTTLLDEFQSLGAIIV 63
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
K +L + L + D VI + + +LE + G
Sbjct: 64 KGELDEHEKLVELMKK--VDVVISALAFPQILD---------------QFKILEAIKVAG 106
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII--- 177
S +G V L K I ++ + +
Sbjct: 107 NIKRFLPSD---FG----VEEDRINALPPFEALIERKRMIRRAIE---EANIPYTYVSAN 156
Query: 178 -LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
YF P DP+ +TV+G G
Sbjct: 157 CFASYFINYLLRPY----DPKD------------------EITVYG------TGEAKFAM 188
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP 289
+ D+ I D + V + + LE+++ +EK GKK
Sbjct: 189 NYEQDIGLYTIKVAT--DPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFK 239
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 3e-10
Identities = 44/293 (15%), Positives = 76/293 (25%), Gaps = 59/293 (20%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ I++ GG GYIG V L + T + + V+ ++ +T +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTP-SSVQLREEFRSMGVTIIEG 63
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
++ + + V D VI + I ++ + A G
Sbjct: 64 EMEEHEKMVSVLKQ--VDIVISALPFPMISSQ---------------IHIINAIKAAGNI 106
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL---- 178
S +G PL K I + + +
Sbjct: 107 KRFLPSD---FG----CEEDRIKPLPPFESVLEKKRIIRRAIEA---AALPYTYVSANCF 156
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
YF HPS R + ++G G +
Sbjct: 157 GAYFVNYLLHPSPH-------------------PNRNDDIVIYG------TGETKFVLNY 191
Query: 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
D+A I D V S E+++ +E SG V
Sbjct: 192 EEDIAKYTIKVAC--DPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKV 242
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 4e-10
Identities = 38/267 (14%), Positives = 78/267 (29%), Gaps = 61/267 (22%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
I +IG G GS + + G++ T +V N K+ + ++ +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG--------KITQTHK----DINILQK 49
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D ++ + V+ G+ ++T L+ V+
Sbjct: 50 DIFDLTLSDLSDQ----NVVVDAYGISPDEAEK---------HVTSLDHLISVLNGTVSP 96
Query: 123 NLVFSSSATAYGW---PKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILL 179
L+ A + + ++ P R++ E + H+++ W I
Sbjct: 97 RLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLK-SHQAEFSWTYI-- 153
Query: 180 RYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239
PS E G R G D+ +I +
Sbjct: 154 --------SPSAMFEP-----------------GERTGDYQIGKDHLLFGSD-GNSFISM 187
Query: 240 VDLADGHIAALRKLDDPKVGCEVYNLG 266
D A + ++ P E + +
Sbjct: 188 EDYAIAVLDE---IERPNHLNEHFTVA 211
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 58/330 (17%), Positives = 108/330 (32%), Gaps = 55/330 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS--EIAVAKVKE-LAGYQGNNMTF 59
+ +L+ G G++G + VL+LL + L A E A ++++ +
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133
Query: 60 HKLDLRDKAALEVVFAG------------------TKFDAVIHFAGLKAVGESVQKPLPY 101
K D+ LEVV AG D ++ A + V +
Sbjct: 134 FKELAADR--LEVV-AGDKSEPDLGLDQPMWRRLAETVDLIVDSAAM--V--NAFPYHEL 186
Query: 102 FDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP--------- 152
F N+ GT L+ + K + S+A + TE+ ++ ++P
Sbjct: 187 FGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWA 246
Query: 153 --YGRSKLFIEEICRDVHRSDSEWKIILLRYFNP--VGAHPSGKGEDPRGIPNNLMPFVT 208
YG SK E + R+ + + + F + A S G+ ++ + +
Sbjct: 247 GGYGTSKWAGEVLLREANDLCALPVAV----FRCGMILADTSYAGQLN---MSDWVTRMV 299
Query: 209 Q--VAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIA-ALRKLDDPKVGCEVYNL 265
+A G P + D + V +A+ R G Y++
Sbjct: 300 LSLMATGIAPRSFYEPDSEGNRQRAHF-DGLPVTFVAEAIAVLGARVAGSSLAGFATYHV 358
Query: 266 GTGKGTSVL--EMVAAFEKASGKKIPLVKS 293
+ E V +A G I +
Sbjct: 359 MNPHDDGIGLDEYVDWLIEA-GYPIRRIDD 387
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-08
Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 32/185 (17%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLL-LGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMT 58
M I ++G G I LL T+ L + +T
Sbjct: 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII--------DHERVT 55
Query: 59 FHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA 118
+ ++ LE + V A + + ++++ ++
Sbjct: 56 VIEGSFQNPGXLEQAVTNA--EVVFVGAM----------------ESGSDMASIVKALSR 97
Query: 119 HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
+ ++ S A G V F Y + + + + S+ + I+
Sbjct: 98 XNIRRVIGVSMAGLSGEFPVALEKWTFD-NLPISYVQGERQARNV---LRESNLNYTILR 153
Query: 179 LRYFN 183
L +
Sbjct: 154 LTWLY 158
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 32/164 (19%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M + +LV G G LLG V + AV G++ F
Sbjct: 1 MNRRVLVTGATG----------LLG---RAVHKEFQQNNWHAVG-----CGFRRARPKFE 42
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
+++L D A+ + + ++H A + +P N+ + L + AA G
Sbjct: 43 QVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG 102
Query: 121 CKNL------VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158
+ VF + Y EE +N YG++KL
Sbjct: 103 AFLIYISSDYVFDGTNPPY--------REEDIPAPLNLYGKTKL 138
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 70/370 (18%), Positives = 125/370 (33%), Gaps = 94/370 (25%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ + + G G +GS QL G +V+ T +L
Sbjct: 4 QRVFIAGHRGMVGSAIRRQLEQRGDVELVL------------------------RTRDEL 39
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVG---ESVQKPLPYFDNNLTGTITLLEVMAAH 119
+L D A+ FA + D V A VG + P + N+ ++ +
Sbjct: 40 NLLDSRAVHDFFASERIDQVYLAAAK--VGGIVANNTYPADFIYQNMMIESNIIHAAHQN 97
Query: 120 GCKNLVFSSSATAYGWPKVV--PCTEEF----PLQAMN-PYGRSKLFIEEICRDVHRSDS 172
L+F S+ Y PK+ P E L+ N PY +K+ ++C +R
Sbjct: 98 DVNKLLFLGSSCIY--PKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR--- 152
Query: 173 EWKIILLRY-FNPVGAHPS---GKGE--DPRG---IPNNLMPFVTQVAVGRRPALTVFGT 223
+Y + P+ G + P IP L F A P + V+G+
Sbjct: 153 -------QYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKA-PDVVVWGS 204
Query: 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDP-----KVGCEVYNLGTGKGTSVLEMVA 278
GT +R+++HV D+A I + + + N+GTG ++ E+
Sbjct: 205 ------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQ 258
Query: 279 AFEKASGKKIPLVKSGRRPGDAEIVYAST------------EKAERELNWKAKYGIDEMC 326
K G K +V+ ++ + +L W + ++
Sbjct: 259 TIAKVVGYKG------------RVVFDASKPDGTPRKLLDVTRL-HQLGWYHEISLEAGL 305
Query: 327 RDQWNWASKN 336
+ W +N
Sbjct: 306 ASTYQWFLEN 315
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 53/232 (22%), Positives = 85/232 (36%), Gaps = 52/232 (22%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAV-----AKVKELA-GYQGNN 56
+ IL+ GG G G ++ +L NA +I V K E+A +
Sbjct: 22 QTILITGGTGSFG-KCFVRKVLDTT---------NAKKIIVYSRDELKQSEMAMEFNDPR 71
Query: 57 MTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
M F D+RD L G D IH A LK V + PL N+ G ++
Sbjct: 72 MRFFIGDVRDLERLNYALEGV--DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINAC 129
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE--ICRDVHRSDSEW 174
+ ++ S+ A P +N YG +KL ++ + + + S+
Sbjct: 130 LKNAISQVIALSTDKA-----ANP---------INLYGATKLCSDKLFVSANNFKGSSQT 175
Query: 175 KIILLRYFNPVGAHPSGKGEDPRG--IPNNLMPFVTQVAVGRRPALTVFGTD 224
+ ++RY N VG+ RG +P F V + + TD
Sbjct: 176 QFSVVRYGNVVGS---------RGSVVPF----FKKLVQNKASE-IPI--TD 211
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 52/291 (17%), Positives = 81/291 (27%), Gaps = 64/291 (21%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV--VVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
K ++V GG G G LL G V V N KEL
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRK------KAAKELR---LQGAEVV 56
Query: 61 KLDLRDKAALEVVFAGTK--FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA 118
+ D D+ +E+ G F ++ E Q L ++
Sbjct: 57 QGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQ------------GKLLADLARR 104
Query: 119 HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
G +V+S + + + + K +EE RD +
Sbjct: 105 LGLHYVVYSG---------LENIKKLTAGRLAAAHFDGKGEVEEYFRD---IGVPMTSVR 152
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
L + N L F+ Q + P + T D + D +
Sbjct: 153 LPCY----------------FENLLSHFLPQ----KAPDGKSYLLSLPTGDVPM--DGMS 190
Query: 239 VVDLADGHIAALRKLDDP-KVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI 288
V DL L L P K + L + + E A K + K +
Sbjct: 191 VSDLGP---VVLSLLKMPEKYVGQNIGL-STCRHTAEEYAALLTKHTRKVV 237
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 36/278 (12%), Positives = 75/278 (26%), Gaps = 62/278 (22%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
K++ ++G G G + ++L G + V + + N+
Sbjct: 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVT--------LIGRRKLTFDEEAYKNVNQE 68
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
+D F G D G + + + + E+ A G
Sbjct: 69 VVDFEKLDDYASAFQG--HDVGFCCLGTTRGKAGAEG---FVRVDRDYVLKSAELAKAGG 123
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
CK+ SS A Y + K +E V + + + R
Sbjct: 124 CKHFNLLSSKGADKSSN-------------FLYLQVKGEVEA---KVEELKFD-RYSVFR 166
Query: 181 YFNPVGAHPS---GKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
P ++ R + F +L + +
Sbjct: 167 --------PGVLLCDRQESRPGEWLVRKFF--------GSLPDSWASGHS---------V 201
Query: 238 HVVDLADGHIAALRKLDDPKV----GCEVYNLGTGKGT 271
VV + + + + D ++ +++LG G+
Sbjct: 202 PVVTVVRAMLNNVVRPRDKQMELLENKAIHDLGKAHGS 239
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 65/315 (20%), Positives = 123/315 (39%), Gaps = 72/315 (22%)
Query: 52 YQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTIT 111
N++ +DL + + + + D V + A VG S ++P+ + + G +
Sbjct: 49 GIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLR 108
Query: 112 LLEVMAAHGCKNLVF--SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICR---- 165
+LE + + F +S++ +G + +P TE+ P +PY +KLF I
Sbjct: 109 ILEALRTVK-PDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYRE 167
Query: 166 --DVHRSDSEWKIILLRYFNPVGAHPSGKGEDP-RGIPNNLMPFVT--------QVAVGR 214
++ IL FN H E P RG + FVT ++ G
Sbjct: 168 AYNMFACSG----IL---FN----H-----ESPLRG-----IEFVTRKITYSLARIKYGL 206
Query: 215 RPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVL 274
+ L + + RD+ + + + +++ +P + Y + TG+ +V
Sbjct: 207 QDKLVLGNLN-------AKRDWGYAPEYVEAMWLMMQQ-PEP----DDYVIATGETHTVR 254
Query: 275 EMV-AAFEKA------SGKKIPLV----KSGR----------RPGDAEIVYASTEKAERE 313
E V A + A G+ I +G+ RP + +I+ + EKA ++
Sbjct: 255 EFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKK 314
Query: 314 LNWKAKYGIDEMCRD 328
L WK + DE+
Sbjct: 315 LGWKPRTTFDELVEI 329
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-05
Identities = 57/332 (17%), Positives = 92/332 (27%), Gaps = 77/332 (23%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTF 59
M +L G GY L G++ N D I + + L
Sbjct: 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLL--------- 53
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA- 118
+ + V +I A P D L L + +AA
Sbjct: 54 --WPGEEPSLDGVT------HLLISTA-----------PDSGGDPVLA---ALGDQIAAR 91
Query: 119 -HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
+ + + S+ YG E PL GR ++ E+ + V +
Sbjct: 92 AAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPN----LPLH 147
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP-ALTVFGTDYSTKDGTVVRDY 236
+ R GI GR P + G V
Sbjct: 148 VFRL---------------AGI----------YGPGRGPFSKLGKGGIRRIIKPGQVFSR 182
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS--- 293
IHV D+A + P G VYN+ + +++A + G +P
Sbjct: 183 IHVEDIAQ---VLAASMARPDPG-AVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDK 238
Query: 294 -----GRRPGDAEIVYASTEKAERELNWKAKY 320
R +E ++ + EL + KY
Sbjct: 239 ADLTPMARSFYSENKRVRNDRIKEELGVRLKY 270
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 22/135 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ +V G +G+ L G + +D E A EL G + F
Sbjct: 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPA----AEL----GAAVRFRN 59
Query: 62 LDLRDKAALEVVFAGT-----KFDAVIHFAGL----KAVGESVQKPLPYFDN----NLTG 108
D+ ++A A +++ AG K +G S L F NL G
Sbjct: 60 ADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIG 119
Query: 109 TITLLEVMAAHGCKN 123
T ++ + A +
Sbjct: 120 TFNMIRLAAEVMSQG 134
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 35/161 (21%), Positives = 49/161 (30%), Gaps = 33/161 (20%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
L+ G G +G L LL V I V E+ G KLD
Sbjct: 2 RTLITGASGQLGIE--LSRLLSERHEV----------IKVYNSSEIQGGY-------KLD 42
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
L D LE + D +I+ A + V + + + N ++
Sbjct: 43 LTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYI 102
Query: 124 L------VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158
+ VF Y EE +N YG SKL
Sbjct: 103 VHISTDYVFDGEKGNY--------KEEDIPNPINYYGLSKL 135
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 43/171 (25%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M+KNILV+GG G +G+ V + T+ +D +N +
Sbjct: 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH----------------SF 64
Query: 61 KLDLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQK-PLPYFDN----NLTGTI 110
+ + ++ V K D + AG + G + L NL
Sbjct: 65 TIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAF 124
Query: 111 TL----LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157
+++ G V + ++ A M YG +K
Sbjct: 125 ASAHIGAKLLNQGGL--FVLTGASAALN-----------RTSGMIAYGATK 162
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 1e-04
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 1 MA-KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTF 59
MA K++L++G G++ T+ L G K V + K+L+ + T
Sbjct: 1 MATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVAC-------RTLESAKKLSA-GVQHSTP 51
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIH 84
LD+ D AAL+ A K D VI
Sbjct: 52 ISLDVNDDAALDAEVA--KHDLVIS 74
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 263 YNLGTGKGTSVLEMV-AAFEKASGKKIPLVK-SGR--RPGDAEIVYASTEKAERELNWKA 318
Y + TG T+V +M AFE +K RP + +++ + KA+R L WK
Sbjct: 254 YVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKP 313
Query: 319 KYGIDEMCRD 328
+ +DE+ R
Sbjct: 314 RTSLDELIRM 323
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 42/174 (24%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
M + +++ G G +G +L Y D
Sbjct: 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDK-------------------------K 38
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
LD+ + + ++ V + +IH A V ++ ++ + N G + G
Sbjct: 39 LLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG 98
Query: 121 CKNL------VFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL----FIEEIC 164
K + VF E +N YG SK F++E+
Sbjct: 99 AKLVYISTDYVFQGDRPE-------GYDEFHNPAPINIYGASKYAGEQFVKELH 145
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 4e-04
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLL--GGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNM 57
M KN+L++G G++ V+ L V L NA +A + +
Sbjct: 22 MGKNVLLLGS-GFVAQ-PVIDTLAANDDINVTVACRTLANAQALA----------KPSGS 69
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVI 83
LD+ D +AL+ V A D VI
Sbjct: 70 KAISLDVTDDSALDKVLA--DNDVVI 93
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 32/136 (23%), Positives = 48/136 (35%), Gaps = 23/136 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ +V GG G +G TV +L G V+ D + +A EL GN F
Sbjct: 31 ASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALA----DEL----GNRAEFVS 82
Query: 62 LDLRD----KAALEVVFA-GTKFDAVIHFAGLKAVGESVQK-----PLPYFDN----NLT 107
++ AA+E G AV+ G VQ+ + F L
Sbjct: 83 TNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLN 142
Query: 108 GTITLLEVMAAHGCKN 123
GT + ++AA
Sbjct: 143 GTYNVARLVAASIAAA 158
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 263 YNLGTGKGTSVLEMV-AAFEKASGKKIPLVK-SGR--RPGDAEIVYASTEKAERELNWKA 318
Y + T +G +V E + +F V+ R RP + + + KA+ L WK
Sbjct: 277 YVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKP 336
Query: 319 KYGIDEMCRD 328
+ G +++ +
Sbjct: 337 QVGFEKLVKM 346
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 24/137 (17%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHK 61
++ GG +G T +L+ G V++D A K+L GNN F
Sbjct: 13 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA----KKL----GNNCVFAP 64
Query: 62 LDLRDKAALEVVFAGT-----KFDAVIHFAGL----KAVGESVQKPLPY--FDN----NL 106
D+ + ++ A + D ++ AG+ K + F NL
Sbjct: 65 ADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 124
Query: 107 TGTITLLEVMAAHGCKN 123
GT ++ ++A +N
Sbjct: 125 MGTFNVIRLVAGEMGQN 141
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+V GG +G T +LL G + VV+D ++ +L G+ F
Sbjct: 10 AVAVVTGGASGLGLATTKRLLDAGAQVVVLDI--RGEDVV----ADL----GDRARFAAA 59
Query: 63 DLRD----KAALEVVFAGTKFDAVIHFAGLKAVGESVQK----PLPYFDN----NLTGTI 110
D+ D +AL++ V++ AG + + L F NL G+
Sbjct: 60 DVTDEAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119
Query: 111 TLLEVMAAHGCKN 123
+L + A K
Sbjct: 120 NVLRLAAERIAKT 132
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 9e-04
Identities = 39/271 (14%), Positives = 75/271 (27%), Gaps = 79/271 (29%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA--KVKELAGYQGNNMT 58
K +L+ G G G H + ++L V IA A + E
Sbjct: 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKV---------IAPARKALAEHPRLDNPVGP 54
Query: 59 FHKLDLRDKAALEVVFA--GTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
+L + +++ F GT S + + + + + +
Sbjct: 55 LAELLPQLDGSIDTAFCCLGT----------TIKEAGSEEA---FRAVDFDLPLAVGKRA 101
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
G ++ + S+ A ++ Y R K +E+ + ++
Sbjct: 102 LEMGARHYLVVSALGADA-------------KSSIFYNRVKGELEQ---ALQEQGWP-QL 144
Query: 177 ILLRYFNPVGAHPS---GKGEDPRGIPNNLMPFVTQVAVGR-RPALTVFGTDYSTKDGTV 232
+ R PS G E+ R + L + ++ G+
Sbjct: 145 TIAR--------PSLLFGPREEFR-LAEILAAPIARILPGKYHG---------------- 179
Query: 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVY 263
I DLA A R + G
Sbjct: 180 ----IEACDLAR---ALWRLALEEGKGVRFV 203
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 100.0 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.97 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.96 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.96 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.96 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.96 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.96 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.96 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.96 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.95 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.95 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.95 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.95 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.95 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.95 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.94 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.94 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.94 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.94 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.94 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.94 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.94 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.94 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.94 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.94 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.94 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.94 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.94 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.94 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.94 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.94 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.94 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.94 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.94 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.94 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.94 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.94 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.93 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.93 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.93 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.93 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.93 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.93 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.93 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.93 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.93 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.93 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.93 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.93 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.93 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.93 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.93 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.93 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.93 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.93 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.93 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.93 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.93 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.93 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.93 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.93 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.93 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.93 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.93 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.93 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.93 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.93 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.93 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.93 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.93 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.93 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.93 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.93 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.93 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.93 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.93 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.93 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.93 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.93 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.93 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.93 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.93 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.93 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.93 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.93 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.93 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.93 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.93 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.93 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.93 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.93 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.93 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.93 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.93 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.93 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.93 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.92 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.92 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.92 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.92 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.92 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.92 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.92 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.92 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.92 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.92 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.92 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.92 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.92 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.92 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.92 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.92 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.92 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.92 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.92 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.92 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.92 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.92 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.92 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.92 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.92 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.92 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.92 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.92 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.92 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.92 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.92 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.92 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.92 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.92 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.92 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.92 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.92 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.92 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.92 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.92 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.92 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.92 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.91 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.91 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.91 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.91 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.91 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.91 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.91 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.91 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.91 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.91 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.91 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.91 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.91 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.91 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.91 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.91 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.91 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.91 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.91 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.91 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.91 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.91 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.91 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.91 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.91 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.91 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.91 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.91 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.91 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.91 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.91 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.9 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.9 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.9 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.9 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.9 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.9 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.9 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.9 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.9 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.9 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.9 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.9 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.9 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.9 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.89 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.89 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.89 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.89 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.89 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.89 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.89 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.88 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.88 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.88 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.88 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.88 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.88 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.87 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.87 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.87 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.86 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.86 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.86 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.86 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.85 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.85 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.85 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.84 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.84 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.83 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.81 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.8 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.79 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.79 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.76 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.75 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.73 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.73 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.71 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.66 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.64 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.63 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.63 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.6 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.59 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.58 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.58 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.55 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.39 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.36 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.24 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.2 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 99.13 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 99.08 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.99 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.95 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.89 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.84 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.83 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.83 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.73 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.66 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.66 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.53 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.53 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.5 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.45 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.42 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.41 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.41 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.29 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.29 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.27 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.17 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.17 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.1 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.08 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 98.03 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.95 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.91 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.89 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.89 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.86 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.82 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.81 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.81 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.79 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.79 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.75 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.75 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.74 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.73 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.72 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.71 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.69 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.68 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.68 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.67 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.66 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.65 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.62 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.62 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.62 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.6 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.59 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.58 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.58 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.57 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.56 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.55 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.54 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.54 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.51 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.48 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.46 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.46 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.46 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.46 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.44 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.43 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.43 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.42 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.42 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.41 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.41 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.4 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.4 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.39 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.39 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.38 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.38 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.37 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.35 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.34 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.33 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.33 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.33 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.3 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.3 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.29 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.25 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.23 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.21 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.2 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.19 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.18 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.18 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.18 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.14 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.14 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.14 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.14 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.12 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.12 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.11 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.1 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.08 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.06 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.05 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.02 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.01 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.0 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 97.0 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.98 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.97 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.96 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.96 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.93 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.92 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.89 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 96.88 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.87 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.87 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.87 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.86 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.85 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.84 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.84 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.83 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.82 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.81 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.79 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.74 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.71 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.71 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.69 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.69 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.69 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.68 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.68 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.65 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.63 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.63 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.61 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.61 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.61 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.6 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.58 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 96.57 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 96.56 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.56 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 96.54 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.53 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.53 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.52 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.52 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.51 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.51 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.48 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.48 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.47 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.47 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.47 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.46 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.46 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.44 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.43 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.43 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.43 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.41 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.4 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.39 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.39 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.38 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.34 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.33 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 96.32 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 96.31 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.3 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 96.28 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.27 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.26 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 96.26 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.26 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.25 |
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=391.40 Aligned_cols=335 Identities=54% Similarity=0.925 Sum_probs=288.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++++++|+++|++|++++|+........+.+.... +.++.++.+|++|.+++.++++..++|+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT---GKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH---SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc---CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 4799999999999999999999999999999998776655554444332 3578899999999999999998657999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+||........+.+...+++|+.++.+++++|++.++++||++||..+||.....+++|+.+..+.++|+.+|.++|
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAE 161 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHHHHH
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999976544455667788999999999999999999989999999999999888888999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
.+++.++.+.++++++++||+++|||++.+. +....+....+.+++.+...++...+.++|..++++++++.++|+|++
T Consensus 162 ~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 241 (341)
T 3enk_A 162 QILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVV 241 (341)
T ss_dssp HHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHH
T ss_pred HHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHH
Confidence 9999998887569999999999999976554 444444456678888777777767788888777777899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY 320 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~ 320 (347)
|+|++++.+++... +...+++||+++++++|+.|+++.+.+.+|.+.++...+..+.......+|++|+++.|||+|++
T Consensus 242 Dva~a~~~~~~~~~-~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 320 (341)
T 3enk_A 242 DLARGHIAALDALE-RRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAER 320 (341)
T ss_dssp HHHHHHHHHHHHHH-HHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHhhh-cCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHcCCCCCC
Confidence 99999999987621 12456999999999999999999999999998887777767777778889999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCC
Q 040584 321 GIDEMCRDQWNWASKNPYGY 340 (347)
Q Consensus 321 ~~~~~i~~~~~~~~~~~~~~ 340 (347)
+++++|+++++||++++..|
T Consensus 321 ~l~~~l~~~~~~~~~~~~~~ 340 (341)
T 3enk_A 321 DLERMCADHWRWQENNPRGF 340 (341)
T ss_dssp CHHHHHHHHHHHHHHSTTSC
T ss_pred CHHHHHHHHHHHHHhcCccC
Confidence 99999999999999997654
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=376.71 Aligned_cols=339 Identities=61% Similarity=1.029 Sum_probs=273.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch------hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA------SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
|+|+||||||+||||++|+++|+++|++|++++|.... .....+.+.... ..++.++.+|++|.+++.+++
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~ 77 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT---GRSVEFEEMDILDQGALQRLF 77 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH---TCCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc---CCceEEEECCCCCHHHHHHHH
Confidence 88999999999999999999999999999999886543 222233333221 347889999999999999999
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC-CCch
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPY 153 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~-~~~Y 153 (347)
+..++|+|||+||........+++...+++|+.++.+++++|++.++++||++||..+||.....+++|+.+..| .+.|
T Consensus 78 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y 157 (348)
T 1ek6_A 78 KKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPY 157 (348)
T ss_dssp HHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHH
T ss_pred HhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCCCCch
Confidence 855699999999975433344567789999999999999999998889999999999999877788999988777 8999
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
+.+|.++|.+++.++.+..+++++++||+++|||++++. +....+....+.+.+.+...+....+.++|...+++++++
T Consensus 158 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 237 (348)
T 1ek6_A 158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (348)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCce
Confidence 999999999999988762359999999999999976444 3333222345666665555555556777775555557889
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHH
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAER 312 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 312 (347)
.++|+|++|+|++++.+++.... ...+++||+++++++|+.|+++.+++.+|.+.++...+..+.......+|++|+++
T Consensus 238 ~~~~i~v~Dva~a~~~~~~~~~~-~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 316 (348)
T 1ek6_A 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQE 316 (348)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTT-TCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHH
T ss_pred EEeeEEHHHHHHHHHHHHhcccc-cCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCHHHHHH
Confidence 99999999999999999987311 12348999999999999999999999999887765555555555667899999999
Q ss_pred hcCCcccccHHHHHHHHHHHHhhCCCCCCCC
Q 040584 313 ELNWKAKYGIDEMCRDQWNWASKNPYGYESP 343 (347)
Q Consensus 313 ~lg~~p~~~~~~~i~~~~~~~~~~~~~~~~~ 343 (347)
.|||+|+++++++|+++++||++++..+..+
T Consensus 317 ~lG~~p~~~l~~~l~~~~~w~~~~~~~~~~~ 347 (348)
T 1ek6_A 317 ELGWTAALGLDRMCEDLWRWQKQNPSGFGTQ 347 (348)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHCTTCSCC-
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999987766653
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-51 Score=369.40 Aligned_cols=328 Identities=42% Similarity=0.708 Sum_probs=269.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||+||||||+||||++|+++|+++|++|++++|....... .+ ..+++++.+|+.|.+++.++++..++|+
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~----~~~~~~~~~D~~~~~~~~~~~~~~~~d~ 70 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED------AI----TEGAKFYNGDLRDKAFLRDVFTQENIEA 70 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG------GS----CTTSEEEECCTTCHHHHHHHHHHSCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh------hc----CCCcEEEECCCCCHHHHHHHHhhcCCCE
Confidence 4789999999999999999999999999999987654321 11 2367899999999999999997546999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+||......+.+++...+++|+.++.+++++|++.++++||++||..+||.....+++|+++..|.+.|+.+|.++|
T Consensus 71 vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e 150 (330)
T 2c20_A 71 VMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIE 150 (330)
T ss_dssp EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHHHHH
T ss_pred EEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHHHHH
Confidence 99999975433344567788999999999999999999999999999999999877788999999889999999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
.+++.++.+. +++++++||+++|||.+.+. |.. ......+.+.+.+...+..+.+.++|...+++++++.++|+|++
T Consensus 151 ~~~~~~~~~~-~~~~~ilrp~~v~G~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~ 228 (330)
T 2c20_A 151 KMLHWYSQAS-NLRYKIFRYFNVAGATPNGIIGED-HRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVE 228 (330)
T ss_dssp HHHHHHHHTS-SCEEEEEECSEEECCCTTCSSCCC-CSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHH
T ss_pred HHHHHHHHHh-CCcEEEEecCcccCCCCcCccccc-cccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHH
Confidence 9999998775 89999999999999975443 222 11223466666555555555677777555555788999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY 320 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~ 320 (347)
|+|+++..++++... ...+++||+++++++|+.|+++.+++.+|.+.++...+..+.......+|++|+++.|||+|++
T Consensus 229 Dva~a~~~~~~~~~~-~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 307 (330)
T 2c20_A 229 DLVAAHFLGLKDLQN-GGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRY 307 (330)
T ss_dssp HHHHHHHHHHHHHHT-TCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSC
T ss_pred HHHHHHHHHHhcccc-CCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCcc
Confidence 999999999986321 1235899999999999999999999999988776555555555567789999999999999999
Q ss_pred -cHHHHHHHHHHHHhhCCCCCCC
Q 040584 321 -GIDEMCRDQWNWASKNPYGYES 342 (347)
Q Consensus 321 -~~~~~i~~~~~~~~~~~~~~~~ 342 (347)
+++++|+++++||++++..|.+
T Consensus 308 ~~l~~~l~~~~~~~~~~~~~~~~ 330 (330)
T 2c20_A 308 VNVKTIIEHAWNWHQKQPNGYEK 330 (330)
T ss_dssp CCHHHHHHHHHHHHHHCSSCCCC
T ss_pred CCHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999877654
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=368.12 Aligned_cols=335 Identities=53% Similarity=0.939 Sum_probs=268.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+||||||+||||++++++|+++|++|++++|.........+.+.... +.++.++.+|++|.+++.+++++.++|+|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v 77 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG---GKHPTFVEGDIRNEALMTEILHDHAIDTV 77 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH---TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc---CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence 589999999999999999999999999999875432222222222221 24678899999999999999975569999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC-CCchhhhHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGRSKLFIE 161 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~-~~~Y~~sK~~~e 161 (347)
||+||........+++...+++|+.++.+++++|++.++++||++||..+||.....+++|+.+..+ .++|+.+|.++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 157 (338)
T 1udb_A 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHH
Confidence 9999975433334556778999999999999999998889999999999999877778888887655 789999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
.+++.++.+..+++++++||+++|||++++. |..+......+.+.+.+...+....+.++|...+.+++++.++|||++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 237 (338)
T 1udb_A 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHH
Confidence 9999998775579999999999999977544 433333344566766666655555677777555556788999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY 320 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~ 320 (347)
|+|++++.+++.... ...+++||+++++++|+.|+++.+.+.+|.+.++...+..+.......+|++|+++.|||+|++
T Consensus 238 Dva~a~~~~l~~~~~-~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 316 (338)
T 1udb_A 238 DLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR 316 (338)
T ss_dssp HHHHHHHHHHHHHTT-CCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHhhhhc-cCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcCCCcCC
Confidence 999999999876211 1234799999999999999999999999988776555555555556778999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCCC
Q 040584 321 GIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 321 ~~~~~i~~~~~~~~~~~~~~~ 341 (347)
+++++|+++++|++++...|.
T Consensus 317 ~l~~~l~~~~~w~~~~~~~~~ 337 (338)
T 1udb_A 317 TLDEMAQDTWHWQSRHPQGYP 337 (338)
T ss_dssp CHHHHHHHHHHHHHHCTTCSC
T ss_pred CHHHHHHHHHHHHHhcccccC
Confidence 999999999999999876553
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-51 Score=372.85 Aligned_cols=318 Identities=25% Similarity=0.343 Sum_probs=262.5
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhcc-CCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY-QGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+|+|||||||||||++|+++|+++|++|++++|...........+...... ...+++++.+|+.|.+++.++++ ++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 101 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK--GV 101 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--TC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--CC
Confidence 3589999999999999999999999999999999877655444444332100 01578999999999999999998 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||+||.........++...+++|+.++.+++++|++.++++|||+||..+||.....+++|+.+..|.+.|+.+|.+
T Consensus 102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~ 181 (351)
T 3ruf_A 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 181 (351)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHH
T ss_pred CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCCCChhHHHHHH
Confidence 99999999765444556777899999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
+|.+++.++++. +++++++||+++|||.. ...+....+. .++.++..+.. +.++| ++++.++|+|
T Consensus 182 ~E~~~~~~~~~~-g~~~~ilRp~~v~G~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~g------~g~~~~~~i~ 247 (351)
T 3ruf_A 182 NEIYAQVYARTY-GFKTIGLRYFNVFGRRQ-----DPNGAYAAVIPKWTAAMLKGDD--VYING------DGETSRDFCY 247 (351)
T ss_dssp HHHHHHHHHHHH-CCCCEEEEECSEESTTC-----CCCSTTCCHHHHHHHHHHHTCC--CEEES------SSCCEECCEE
T ss_pred HHHHHHHHHHHh-CCCEEEEeeCceeCcCC-----CCCcchhhHHHHHHHHHHcCCC--cEEeC------CCCeEEeeEE
Confidence 999999998876 89999999999999843 2222122343 46677777653 45556 6889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-----cccCCCCCCCchhhccChHHHHHh
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-----LVKSGRRPGDAEIVYASTEKAERE 313 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~~~ 313 (347)
++|+|++++.++... +...+++||+++++++|+.|+++.+++.+|.+.. ....+..+.......+|++|+++.
T Consensus 248 v~Dva~a~~~~~~~~--~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 325 (351)
T 3ruf_A 248 IDNVIQMNILSALAK--DSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDL 325 (351)
T ss_dssp HHHHHHHHHHHHTCC--GGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHH
T ss_pred HHHHHHHHHHHHhhc--cccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHH
Confidence 999999999988761 2356799999999999999999999999998432 222334445566788999999999
Q ss_pred cCCcccccHHHHHHHHHHHHhhC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|||+|+++++++|+++++||+++
T Consensus 326 lG~~p~~~~~~~l~~~~~~~~~~ 348 (351)
T 3ruf_A 326 LKYRPNIKIREGLRLSMPWYVRF 348 (351)
T ss_dssp HCCCCCCCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999876
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=361.44 Aligned_cols=303 Identities=21% Similarity=0.259 Sum_probs=252.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|||||||||||++|+++|+++|++|++++|++.... . .+++++.+|+. .+++.++++ ++|
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~-----------~~~~~~~~Dl~-~~~~~~~~~--~~d 64 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--I-----------NDYEYRVSDYT-LEDLINQLN--DVD 64 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------------------CCEEEECCCC-HHHHHHHTT--TCS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--C-----------CceEEEEcccc-HHHHHHhhc--CCC
Confidence 8999999999999999999999999999999999843321 1 16789999999 999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+|+..... ++...+++|+.++.+++++|++.+++||||+||..+||.....+++|+++..|.+.|+.+|.++
T Consensus 65 ~Vih~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 65 AVVHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLAC 140 (311)
T ss_dssp EEEECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHHHH
T ss_pred EEEEccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHHHH
Confidence 999999976543 6678899999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|++++.++.+. +++++++||+++|||.. ... ..+..++..+..+. .+.++| ++++.++|+|++
T Consensus 141 E~~~~~~~~~~-g~~~~ilRp~~v~G~~~-----~~~---~~~~~~~~~~~~~~--~~~~~g------~~~~~~~~v~v~ 203 (311)
T 3m2p_A 141 EHIGNIYSRKK-GLCIKNLRFAHLYGFNE-----KNN---YMINRFFRQAFHGE--QLTLHA------NSVAKREFLYAK 203 (311)
T ss_dssp HHHHHHHHHHS-CCEEEEEEECEEECSCC-------C---CHHHHHHHHHHTCC--CEEESS------BCCCCEEEEEHH
T ss_pred HHHHHHHHHHc-CCCEEEEeeCceeCcCC-----CCC---CHHHHHHHHHHcCC--CeEEec------CCCeEEceEEHH
Confidence 99999998875 99999999999999842 111 22344666666665 455556 688999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC-CCCCchhhccChHHHHHhcCCccc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR-RPGDAEIVYASTEKAERELNWKAK 319 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lg~~p~ 319 (347)
|+|+++..++++ + ..+++||+++++.+|+.|+++.+++.+|.+.++...+. .........+|++|+++.|||+|+
T Consensus 204 Dva~a~~~~~~~---~-~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 279 (311)
T 3m2p_A 204 DAAKSVIYALKQ---E-KVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTD 279 (311)
T ss_dssp HHHHHHHHHTTC---T-TCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCS
T ss_pred HHHHHHHHHHhc---C-CCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcc
Confidence 999999999886 2 26799999999999999999999999999877666555 556667788999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCCCCC
Q 040584 320 YGIDEMCRDQWNWASKNPYGYESPN 344 (347)
Q Consensus 320 ~~~~~~i~~~~~~~~~~~~~~~~~~ 344 (347)
++++++|+++++|+++++.-+.++.
T Consensus 280 ~~~~~~l~~~~~~~~~~~~~~~~~~ 304 (311)
T 3m2p_A 280 YNFATAVEEIHLLMRGLDDVPLWYE 304 (311)
T ss_dssp CCHHHHHHHHHHHHCC---------
T ss_pred cCHHHHHHHHHHHHHhcccCcceec
Confidence 9999999999999998876655543
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=365.37 Aligned_cols=339 Identities=39% Similarity=0.658 Sum_probs=267.0
Q ss_pred CCceEEEEcCCCcccHHHHHHHH-hCCCeEEEEeCCCchh---------HHHHHHHHHhhccC-CCC---eEEEecCCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNAS---------EIAVAKVKELAGYQ-GNN---MTFHKLDLRD 66 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~-~~g~~v~~~~r~~~~~---------~~~~~~~~~~~~~~-~~~---~~~~~~Dl~d 66 (347)
++|+||||||+||||++|+++|+ ++|++|++++|..... ....+.+..+.+.. ..+ +.++.+|++|
T Consensus 1 s~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 35799999999999999999999 9999999999876542 22222222221100 124 8899999999
Q ss_pred HHHHHHHHccCC-CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCC-------C
Q 040584 67 KAALEVVFAGTK-FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPK-------V 138 (347)
Q Consensus 67 ~~~~~~~~~~~~-~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~-------~ 138 (347)
.+.+.++++..+ +|+|||+||......+.+++...+++|+.++.+++++|++.++++||++||..+||... .
T Consensus 81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence 999999998555 99999999976433344567789999999999999999999999999999999998765 5
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHH-----HHHc
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVT-----QVAV 212 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~-----~~~~ 212 (347)
.+++|+.+..|.+.|+.+|.++|.+++.++.++ +++++++||++||||.+.+. |... .....+.+.+. ++..
T Consensus 161 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 238 (397)
T 1gy8_A 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAY-GIKGICLRYFNACGAHEDGDIGEHY-QGSTHLIPIILGRVMSDIAP 238 (397)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECEEECCCTTSSCSCCS-TTCCSHHHHHHHHHHHHHSC
T ss_pred cCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH-CCcEEEEeccceeCCCccccccccc-cchhHHHHHHHHHHHHHHHh
Confidence 788999998889999999999999999998876 89999999999999975432 2211 11234555544 5555
Q ss_pred CCC----------CceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCC--CCC---eeEEccCCCcccHHHHH
Q 040584 213 GRR----------PALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPK--VGC---EVYNLGTGKGTSVLEMV 277 (347)
Q Consensus 213 ~~~----------~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~--~~~---~~~nv~~~~~~s~~e~~ 277 (347)
+.. ..+.++|...+++++++.++|||++|+|++++.+++...... ..+ ++||+++++++|+.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~ 318 (397)
T 1gy8_A 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVI 318 (397)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHH
T ss_pred cCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHHH
Confidence 543 356777755555578899999999999999999998621110 013 89999999999999999
Q ss_pred HHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc-cHHHHHHHHHHHHhhCCCCCC
Q 040584 278 AAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 278 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~-~~~~~i~~~~~~~~~~~~~~~ 341 (347)
+.+.+.+|.+.++...+..+.......+|++|+++.|||+|++ +++++|+++++||++++..|.
T Consensus 319 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~~~~ 383 (397)
T 1gy8_A 319 EVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA 383 (397)
T ss_dssp HHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC
T ss_pred HHHHHHhCCCCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhcccccC
Confidence 9999999988776555545555567789999999999999999 999999999999999876554
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-50 Score=365.43 Aligned_cols=315 Identities=30% Similarity=0.453 Sum_probs=253.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|+|||||||||||++|+++|+++| ++|++++|...... ...+..+. ..+++.++.+|+.|.+.+.+++++.++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 99 (346)
T 4egb_A 24 AMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQ--DHPNYYFVKGEIQNGELLEHVIKERDV 99 (346)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTT--TCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred CCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhc--cCCCeEEEEcCCCCHHHHHHHHhhcCC
Confidence 4799999999999999999999999 77888877653211 01111111 135889999999999999999985459
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC-CCCCCCCCCCCCCCCchhhhHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP-KVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~-~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
|+|||+||........+++...+++|+.++.+++++|++.++++|||+||..+||.. ...+++|+.+..|.+.|+.+|.
T Consensus 100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~ 179 (346)
T 4egb_A 100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKA 179 (346)
T ss_dssp CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHHHHHHH
T ss_pred CEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChhHHHHH
Confidence 999999998765556677888999999999999999999999999999999999976 4678999999999999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
++|.+++.++.+. +++++++||+++|||.. ... ..+..++..+..+. .+.++| ++++.++|||
T Consensus 180 ~~E~~~~~~~~~~-g~~~~ilRp~~v~G~~~-----~~~---~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~i~ 242 (346)
T 4egb_A 180 SADMIALAYYKTY-QLPVIVTRCSNNYGPYQ-----YPE---KLIPLMVTNALEGK--KLPLYG------DGLNVRDWLH 242 (346)
T ss_dssp HHHHHHHHHHHHH-CCCEEEEEECEEESTTC-----CTT---SHHHHHHHHHHTTC--CCEEET------TSCCEECEEE
T ss_pred HHHHHHHHHHHHh-CCCEEEEeecceeCcCC-----Ccc---chHHHHHHHHHcCC--CceeeC------CCCeEEeeEE
Confidence 9999999998876 89999999999999842 111 22334666677665 345556 7889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-cccCCCCCCCchhhccChHHHHHhcCCc
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-LVKSGRRPGDAEIVYASTEKAERELNWK 317 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lg~~ 317 (347)
++|+|+++..+++. + ..+++||+++++++|+.|+++.+++.+|.+.+ +...+..+.......+|++|+++.|||+
T Consensus 243 v~Dva~a~~~~~~~---~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 318 (346)
T 4egb_A 243 VTDHCSAIDVVLHK---G-RVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWE 318 (346)
T ss_dssp HHHHHHHHHHHHHH---C-CTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhc---C-CCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCC
Confidence 99999999999998 2 36689999999999999999999999998765 4444444555566779999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCCCCC
Q 040584 318 AKYGIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 318 p~~~~~~~i~~~~~~~~~~~~~~~ 341 (347)
|+++++++|+++++||++++..++
T Consensus 319 p~~~~~e~l~~~~~~~~~~~~~~~ 342 (346)
T 4egb_A 319 PKYTFEQGLQETVQWYEKNEEWWK 342 (346)
T ss_dssp CCCCHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999865443
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=358.31 Aligned_cols=305 Identities=28% Similarity=0.425 Sum_probs=252.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||||||||||++|+++|+++|++|++++|........ ...+++++.+|+.|.+ +.++++ + |+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~~Dl~d~~-~~~~~~--~-d~v 66 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF----------VNPSAELHVRDLKDYS-WGAGIK--G-DVV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG----------SCTTSEEECCCTTSTT-TTTTCC--C-SEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh----------cCCCceEEECccccHH-HHhhcC--C-CEE
Confidence 6899999999999999999999999999999876643211 1357889999999998 887777 4 999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+|+........+++...+++|+.++.+++++|++.++++|||+||..+||.....+++|+.+..|.+.|+.+|.++|.
T Consensus 67 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~ 146 (312)
T 3ko8_A 67 FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEV 146 (312)
T ss_dssp EECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred EECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Confidence 99999765555667788899999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
+++.++.+. +++++++||+++|||... ...+..++.++..+. ..+.++| ++++.++++|++|+
T Consensus 147 ~~~~~~~~~-g~~~~~lrp~~v~g~~~~---------~~~~~~~~~~~~~~~-~~~~~~~------~g~~~~~~i~v~Dv 209 (312)
T 3ko8_A 147 MCATYARLF-GVRCLAVRYANVVGPRLR---------HGVIYDFIMKLRRNP-NVLEVLG------DGTQRKSYLYVRDA 209 (312)
T ss_dssp HHHHHHHHH-CCEEEEEEECEEECTTCC---------SSHHHHHHHHHHHCT-TEEEEC----------CEECEEEHHHH
T ss_pred HHHHHHHHh-CCCEEEEeeccccCcCCC---------CChHHHHHHHHHhCC-CCeEEcC------CCCeEEeeEEHHHH
Confidence 999998876 999999999999998421 122445666666553 2455556 78899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC------CCCCchhhccChHHHHHhcCC
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR------RPGDAEIVYASTEKAERELNW 316 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~~k~~~~lg~ 316 (347)
|++++.++++...+...+++||+++++++|+.|+++.+.+.+|.+.++...+. .+.......+|++|+++.|||
T Consensus 210 a~a~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 289 (312)
T 3ko8_A 210 VEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGW 289 (312)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCC
T ss_pred HHHHHHHHHhccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCC
Confidence 99999999862222356799999999999999999999999998876555332 233445678999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCC
Q 040584 317 KAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+|+++++++|+++++|++++.|
T Consensus 290 ~p~~~~~~~l~~~~~~~~~~~~ 311 (312)
T 3ko8_A 290 RPTMTSAEAVKKTAEDLAKELW 311 (312)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998765
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=364.35 Aligned_cols=314 Identities=19% Similarity=0.301 Sum_probs=251.8
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR-DKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~~ 78 (347)
|||+|||||||||||++|+++|+++ ||+|++++|+........ ...+++++.+|++ |.+.+.++++ +
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~---------~~~~v~~~~~Dl~~d~~~~~~~~~--~ 91 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV---------KHERMHFFEGDITINKEWVEYHVK--K 91 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG---------GSTTEEEEECCTTTCHHHHHHHHH--H
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc---------cCCCeEEEeCccCCCHHHHHHHhc--c
Confidence 3589999999999999999999998 999999999876543211 1358999999999 9999999998 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC-------CCCC
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-------QAMN 151 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~-------~~~~ 151 (347)
+|+|||+||.........++...+++|+.++.+++++|++.+ +||||+||..+||.....+++|+.+. .|.+
T Consensus 92 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~ 170 (372)
T 3slg_A 92 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRW 170 (372)
T ss_dssp CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTH
T ss_pred CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCC
Confidence 999999999766544556777899999999999999999998 89999999999998877788877654 5677
Q ss_pred chhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCc
Q 040584 152 PYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
.|+.+|.++|.+++.++.+ +++++++||+++|||...+...........+..++.++..+. .+.++| +++
T Consensus 171 ~Y~~sK~~~E~~~~~~~~~--g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~g~ 240 (372)
T 3slg_A 171 IYACSKQLMDRVIWGYGME--GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGE--NISLVD------GGS 240 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTT--TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTC--CEEEGG------GGC
T ss_pred cHHHHHHHHHHHHHHHHHC--CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCC--CcEEeC------CCc
Confidence 9999999999999999876 899999999999999643321111111122334667777765 455566 678
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC-CCcccHHHHHHHHHHHhCCCCCcccCCCC--------------
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGT-GKGTSVLEMVAAFEKASGKKIPLVKSGRR-------------- 296 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------------- 296 (347)
+.++|+|++|+|++++.++++.. ....+++||+++ ++.+|+.|+++.+++.+|.+.++...+..
T Consensus 241 ~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (372)
T 3slg_A 241 QKRAFTYVDDGISALMKIIENSN-GVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGN 319 (372)
T ss_dssp CEEECEEHHHHHHHHHHHHHCGG-GTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC--------
T ss_pred eEEEEEEHHHHHHHHHHHHhccc-CcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccC
Confidence 99999999999999999998722 114679999999 48999999999999999977654322100
Q ss_pred -CCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 297 -PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 297 -~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
........+|++|+++.|||+|+++++++|+++++||+++.
T Consensus 320 ~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 361 (372)
T 3slg_A 320 GYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHV 361 (372)
T ss_dssp -----CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCH
T ss_pred CccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 02344567899999999999999999999999999998763
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=352.20 Aligned_cols=305 Identities=25% Similarity=0.385 Sum_probs=245.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||+||||||+||||++|+++|+++|+.|.+..|+...... ...++.++.+|++| +++.++++ ++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~-~~~~~~~~--~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEF-----------VNEAARLVKADLAA-DDIKDYLK--GAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGG-----------SCTTEEEECCCTTT-SCCHHHHT--TCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhh-----------cCCCcEEEECcCCh-HHHHHHhc--CCCE
Confidence 4789999999999999999999999555444443332211 13478899999999 88999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+|+......+.+++...+++|+.++.+++++|++.++++||++||..+||.....+++|+.+..|.+.|+.+|.++|
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e 146 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACE 146 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHH
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 99999976555566778889999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
.+++.++.+. +++++++||+++|||... ...+..++.++..+. ..+.++| ++++.++|+|++|
T Consensus 147 ~~~~~~~~~~-g~~~~ilRp~~v~G~~~~---------~~~~~~~~~~~~~~~-~~~~~~~------~g~~~~~~i~v~D 209 (313)
T 3ehe_A 147 ALIESYCHTF-DMQAWIYRFANVIGRRST---------HGVIYDFIMKLKRNP-EELEILG------NGEQNKSYIYISD 209 (313)
T ss_dssp HHHHHHHHHT-TCEEEEEECSCEESTTCC---------CSHHHHHHHHHHHCT-TEEEEST------TSCCEECCEEHHH
T ss_pred HHHHHHHHhc-CCCEEEEeeccccCcCCC---------cChHHHHHHHHHcCC-CceEEeC------CCCeEEeEEEHHH
Confidence 9999998886 999999999999998421 122444666666553 2455666 7889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC---CCCCchhhccChHHHHHhcCCcc
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR---RPGDAEIVYASTEKAERELNWKA 318 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~d~~k~~~~lg~~p 318 (347)
+|++++.+++. ...+++||+++++++|+.|+++.+++.+|.++.+...+. .........+|++|++ .|||+|
T Consensus 210 va~a~~~~~~~----~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p 284 (313)
T 3ehe_A 210 CVDAMLFGLRG----DERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLK-RLGWKP 284 (313)
T ss_dssp HHHHHHHHTTC----CSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHH-HHTCCC
T ss_pred HHHHHHHHhcc----CCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHH-HcCCCC
Confidence 99999998873 356699999999999999999999999998876554332 2233455778999995 589999
Q ss_pred cccHHHHHHHHHHHHhhCCCCCCC
Q 040584 319 KYGIDEMCRDQWNWASKNPYGYES 342 (347)
Q Consensus 319 ~~~~~~~i~~~~~~~~~~~~~~~~ 342 (347)
+++++++|+++++||++++....+
T Consensus 285 ~~~~~e~l~~~~~~~~~~~~~~~~ 308 (313)
T 3ehe_A 285 RYNSEEAVRMAVRDLVEDLDEEGH 308 (313)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHhCcccccc
Confidence 999999999999999998655444
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-48 Score=351.73 Aligned_cols=317 Identities=24% Similarity=0.345 Sum_probs=253.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhcc-CCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY-QGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+|||||||||||++|+++|+++|++|++++|+........+.+...... ...++.++.+|+.|.+++.++++ ++|
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d 104 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GVD 104 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--CCC
Confidence 579999999999999999999999999999999765322222222111100 02478899999999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+||........+++...+++|+.++.+++++|++.++++||++||..+||.....+++|+.+..|.+.|+.+|.++
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~ 184 (352)
T 1sb8_A 105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVN 184 (352)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHH
T ss_pred EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 99999997543334456778899999999999999999999999999999999987777889999988999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++.++.+. +++++++||+++|||... .......+. .++..+..+.. +.++| ++++.++|+|+
T Consensus 185 e~~~~~~~~~~-g~~~~ilRp~~v~G~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~g------~g~~~~~~i~v 250 (352)
T 1sb8_A 185 ELYADVFSRCY-GFSTIGLRYFNVFGRRQD-----PNGAYAAVIPKWTSSMIQGDD--VYING------DGETSRDFCYI 250 (352)
T ss_dssp HHHHHHHHHHH-CCCCEEEEECCEECTTCC-----CCSTTCCHHHHHHHHHHHTCC--CEEES------SSCCEECCEEH
T ss_pred HHHHHHHHHHc-CCCEEEEEECceeCcCCC-----CCcchhhHHHHHHHHHHCCCC--cEEeC------CCCceEeeEEH
Confidence 99999988775 899999999999998421 111111233 35666666653 34455 67889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHh---CCCCCc--ccCCCCCCCchhhccChHHHHHhc
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKAS---GKKIPL--VKSGRRPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~---g~~~~~--~~~~~~~~~~~~~~~d~~k~~~~l 314 (347)
+|+|++++.++... +...+++||+++++++|+.|+++.+.+.+ |.+.+. ...+..+.......+|++|+++.|
T Consensus 251 ~Dva~a~~~~~~~~--~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 328 (352)
T 1sb8_A 251 ENTVQANLLAATAG--LDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLL 328 (352)
T ss_dssp HHHHHHHHHHHTCC--GGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHT
T ss_pred HHHHHHHHHHHhcc--ccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHh
Confidence 99999999888751 12456999999999999999999999999 877652 223333444456778999999999
Q ss_pred CCcccccHHHHHHHHHHHHhhC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~ 336 (347)
||+|+++++++|+++++||+++
T Consensus 329 G~~p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 329 GYAPKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999865
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=347.23 Aligned_cols=301 Identities=21% Similarity=0.218 Sum_probs=246.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|||||||||||++|+++|+++|+ +.... ...++.+.+|+.|.+.+.+++++.++|
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~---------------~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAG------LPGED---------------WVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE---------------EEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc---------------ccccCceecccCCHHHHHHHHhhcCCC
Confidence 468999999999999999999999998 11111 113344578999999999999866699
Q ss_pred EEEEccccccC-CccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC----CCCCCC-chh
Q 040584 81 AVIHFAGLKAV-GESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF----PLQAMN-PYG 154 (347)
Q Consensus 81 ~vih~a~~~~~-~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~----~~~~~~-~Y~ 154 (347)
+|||+|+.... ....+++...+++|+.++.+++++|++.++++|||+||..+||.....+++|+. +..|.+ +|+
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~ 143 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYS 143 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHH
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHH
Confidence 99999997542 234566778899999999999999999999999999999999988888899986 555655 599
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHH----HHcCCCCceEEecccCCCCC
Q 040584 155 RSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQ----VAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~g~~~~~~~ 229 (347)
.+|.++|.+++.++++. +++++++||+++|||..... .....+.+ ++.+ +..+. .+.++| +
T Consensus 144 ~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~Gp~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~ 209 (319)
T 4b8w_A 144 YAKRMIDVQNRAYFQQY-GCTFTAVIPTNVFGPHDNFN-----IEDGHVLPGLIHKVHLAKSSGS--ALTVWG------T 209 (319)
T ss_dssp HHHHHHHHHHHHHHHHH-CCEEEEEEECEEECTTCCCC-----TTTSCHHHHHHHHHHHHHHHTC--CEEEES------C
T ss_pred HHHHHHHHHHHHHHHhh-CCCEEEEeeccccCCCCCCC-----CccccccHHHHHHHHHHhccCC--ceEEeC------C
Confidence 99999999999998876 89999999999999853211 11122333 4554 45554 456666 7
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHH
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEK 309 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 309 (347)
+++.++|+|++|+|+++..++++.. ...+++||+++++++|+.|+++.+.+.+|.+.++...+..+.......+|++|
T Consensus 210 g~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 287 (319)
T 4b8w_A 210 GNPRRQFIYSLDLAQLFIWVLREYN--EVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSK 287 (319)
T ss_dssp SCCEECEEEHHHHHHHHHHHHHHCC--CSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHH
T ss_pred CCeeEEEEeHHHHHHHHHHHHhccc--cCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHH
Confidence 8899999999999999999998722 23468999999999999999999999999888776666555556667899999
Q ss_pred HHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 310 AERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 310 ~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+++.|||.|.++++++|+++++||+++..
T Consensus 288 ~~~~lg~~p~~~~~~~l~~~~~~~~~~~~ 316 (319)
T 4b8w_A 288 LRTYLPDFRFTPFKQAVKETCAWFTDNYE 316 (319)
T ss_dssp HHHHCTTCCCCCHHHHHHHHHHHHHHSCS
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998854
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=345.81 Aligned_cols=302 Identities=21% Similarity=0.299 Sum_probs=248.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|++++|+... .. .++.++.+|++|.+++.++++..++|+
T Consensus 12 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-------------l~~~~~~~Dl~d~~~~~~~~~~~~~d~ 77 (321)
T 2pk3_A 12 SMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-------------PNVEMISLDIMDSQRVKKVISDIKPDY 77 (321)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-------------TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred cceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-------------ceeeEEECCCCCHHHHHHHHHhcCCCE
Confidence 4789999999999999999999999999999987654 11 057889999999999999998535899
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCCC--CCCCCCCCCCCCCCCchhhhHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGWP--KVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~~--~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
|||+||........+++...+++|+.++.+++++|++. ++++||++||..+||.. ...+++|+.+..+.+.|+.+|.
T Consensus 78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~ 157 (321)
T 2pk3_A 78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKA 157 (321)
T ss_dssp EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHH
T ss_pred EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHH
Confidence 99999976543345567889999999999999999876 58899999999999876 6678899999889999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc---CCCCceEEecccCCCCCCceeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV---GRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
++|.+++.++.+. +++++++||+++|||.. ... ..+..++..+.. |....+..++ ++++.++
T Consensus 158 ~~E~~~~~~~~~~-gi~~~ilrp~~v~g~~~-----~~~---~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~ 222 (321)
T 2pk3_A 158 SVGMLARQYVKAY-GMDIIHTRTFNHIGPGQ-----SLG---FVTQDFAKQIVDIEMEKQEPIIKVG------NLEAVRD 222 (321)
T ss_dssp HHHHHHHHHHHHH-CCEEEEEEECEEECTTC-----CTT---SHHHHHHHHHHHHHTTSSCSEEEES------CSSCEEE
T ss_pred HHHHHHHHHHHHc-CCCEEEEEeCcccCcCC-----CCC---chHHHHHHHHHHHhcCCCCCeEEeC------CCCcEEe
Confidence 9999999988775 89999999999999842 111 112234444444 5212344555 6788999
Q ss_pred eeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCC--CCCCCchhhccChHHHHHh
Q 040584 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG--RRPGDAEIVYASTEKAERE 313 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~d~~k~~~~ 313 (347)
++|++|+|++++.+++. + ..+++||+++++.+|+.|+++.+.+.+|.+.++...+ .++.......+|++|+++.
T Consensus 223 ~v~v~Dva~a~~~~~~~---~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~ 298 (321)
T 2pk3_A 223 FTDVRDIVQAYWLLSQY---G-KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDS 298 (321)
T ss_dssp EEEHHHHHHHHHHHHHH---C-CTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHH
T ss_pred eEEHHHHHHHHHHHHhC---C-CCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHH
Confidence 99999999999999987 2 3568999999999999999999999999876654444 2334445678999999999
Q ss_pred cCCcccccHHHHHHHHHHHHhhC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|||+|+++++++|+++++||+++
T Consensus 299 lG~~p~~~~~e~l~~~~~~~~~~ 321 (321)
T 2pk3_A 299 TGWKPRIPLEKSLFEILQSYRQA 321 (321)
T ss_dssp HCCCCCSCHHHHHHHHHHHHHTC
T ss_pred cCCCcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999864
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-48 Score=346.70 Aligned_cols=302 Identities=34% Similarity=0.499 Sum_probs=247.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+||||||+||||++++++|+++|++|++++|....... .+ ..++.++.+|++|.+++.++++..++|+|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~------~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 70 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE------NV----PKGVPFFRVDLRDKEGVERAFREFRPTHV 70 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG------GS----CTTCCEECCCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh------hc----ccCeEEEECCCCCHHHHHHHHHhcCCCEE
Confidence 589999999999999999999999999999885432210 00 13677889999999999999874459999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc-cccCC-CCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA-TAYGW-PKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~-~~yg~-~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
||+|+......+.+++...+++|+.++.+++++|++.++++||++||. .+||. ....+++|+.+..|.++|+.+|.++
T Consensus 71 i~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~ 150 (311)
T 2p5y_A 71 SHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAF 150 (311)
T ss_dssp EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHHHH
T ss_pred EECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHHHH
Confidence 999997543334456778899999999999999999888999999999 99987 5556788988888899999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEe-----cccCCCCCCceee
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVF-----GTDYSTKDGTVVR 234 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~ 234 (347)
|.+++.++++. +++++++||+++|||... ... ...+.+ ++.++..+. .+.++ | ++.+.+
T Consensus 151 e~~~~~~~~~~-~~~~~~lrp~~v~Gp~~~-----~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~g~~~~ 215 (311)
T 2p5y_A 151 EHYLSVYGQSY-GLKWVSLRYGNVYGPRQD-----PHG-EAGVVAIFAERVLKGL--PVTLYARKTPG------DEGCVR 215 (311)
T ss_dssp HHHHHHHHHHH-CCCEEEEEECEEECTTCC-----SSS-TTHHHHHHHHHHHHTC--CEEEECSSSTT------SCCCEE
T ss_pred HHHHHHHHHHc-CCCEEEEeeccccCcCCC-----CCC-cCcHHHHHHHHHHcCC--CcEEEecccCC------CCCeEE
Confidence 99999988775 899999999999998421 111 012333 556665654 34444 5 678899
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhc
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 314 (347)
+|+|++|+|+++..+++. + +++||+++++++|+.|+++.+++.+|.+.++...+..+.......+|++|+++ |
T Consensus 216 ~~i~v~Dva~a~~~~~~~---~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-l 288 (311)
T 2p5y_A 216 DYVYVGDVAEAHALALFS---L---EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMA-H 288 (311)
T ss_dssp CEEEHHHHHHHHHHHHHH---C---CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHT-T
T ss_pred eeEEHHHHHHHHHHHHhC---C---CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHH-C
Confidence 999999999999999987 2 58999999999999999999999999887765555555555677899999999 9
Q ss_pred CCcccccHHHHHHHHHHHHhhC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~ 336 (347)
||+|+++++++|+++++||+++
T Consensus 289 g~~p~~~~~~~l~~~~~~~~~~ 310 (311)
T 2p5y_A 289 GWRPKVGFQEGIRLTVDHFRGA 310 (311)
T ss_dssp TCCCSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999764
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=346.41 Aligned_cols=314 Identities=20% Similarity=0.254 Sum_probs=249.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+||||||+||||++|+++|+++|++|++++|+...... ..+..+. ...++.++.+|+.|.+++.+++++.++|
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLRELG--IEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc--cchhhcc--ccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999997654210 1111110 1246889999999999999999854579
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC-CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
+|||+||......+.+++...+++|+.++.+++++|++.++ ++||++||..+||.....+++|+.+..|.+.|+.+|.+
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~ 168 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLY 168 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHH
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHHH
Confidence 99999997543334556778999999999999999999886 89999999999998777789999999999999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
+|.+++.++.++ +++++++||+++|||.. ........+..++.++..+.... ..+| ++++.++|+|+
T Consensus 169 ~e~~~~~~~~~~-~~~~~i~r~~~v~Gp~~-----~~~~~~~~~~~~~~~~~~g~~~~-~~~g------~g~~~~~~i~v 235 (335)
T 1rpn_A 169 GHWITVNYRESF-GLHASSGILFNHESPLR-----GIEFVTRKVTDAVARIKLGKQQE-LRLG------NVDAKRDWGFA 235 (335)
T ss_dssp HHHHHHHHHHHH-CCCEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHTTSCSC-EEES------CTTCEEECEEH
T ss_pred HHHHHHHHHHHc-CCcEEEEeeCcccCCCC-----CCCcchHHHHHHHHHHHcCCCce-EEeC------CCcceeceEEH
Confidence 999999988775 89999999999999842 11100111333555666665433 2345 67899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC--ccc--CCCCCCCchhhccChHHHHHhcC
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP--LVK--SGRRPGDAEIVYASTEKAERELN 315 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~--~~~--~~~~~~~~~~~~~d~~k~~~~lg 315 (347)
+|+|++++.++++. . +++||+++++++|+.|+++.+.+.+|.+.+ +.. ...++.......+|++|+++.||
T Consensus 236 ~Dva~a~~~~~~~~---~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 310 (335)
T 1rpn_A 236 GDYVEAMWLMLQQD---K--ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLG 310 (335)
T ss_dssp HHHHHHHHHHHHSS---S--CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHC
T ss_pred HHHHHHHHHHHhcC---C--CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcC
Confidence 99999999999872 1 389999999999999999999999998642 111 11233344556789999999999
Q ss_pred CcccccHHHHHHHHHHHHhhC
Q 040584 316 WKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 316 ~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|+|+++++++|+++++|++++
T Consensus 311 ~~p~~~l~e~l~~~~~~~~~~ 331 (335)
T 1rpn_A 311 WKPRTSLDELIRMMVEADLRR 331 (335)
T ss_dssp CCCCSCHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=346.16 Aligned_cols=318 Identities=23% Similarity=0.338 Sum_probs=249.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
||+|||||||||||++|+++|+++|++|++++|... ......+.+.. ..++.++.+|++|.+++.+++++.++|
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~~d 75 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-----LGNFEFVHGDIRNKNDVTRLITKYMPD 75 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-----TCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc-----CCceEEEEcCCCCHHHHHHHHhccCCC
Confidence 478999999999999999999999999999998542 22222222221 236889999999999999999843499
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccccccCCCCCC----------------CCCC
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKVV----------------PCTE 143 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~~yg~~~~~----------------~~~e 143 (347)
+|||+||........+++...+++|+.++.+++++|++.+++ +||++||..+||..... +++|
T Consensus 76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e 155 (347)
T 1orr_A 76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDE 155 (347)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCT
T ss_pred EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccc
Confidence 999999975433334567789999999999999999998875 99999999999865433 2567
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCC---CceEE
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR---PALTV 220 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 220 (347)
+.+..+.+.|+.+|.++|.+++.++.+. +++++++||++||||..... .....+..++.+...+.. ..+.+
T Consensus 156 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilrp~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (347)
T 1orr_A 156 STQLDFHSPYGCSKGAADQYMLDYARIF-GLNTVVFRHSSMYGGRQFAT-----YDQGWVGWFCQKAVEIKNGINKPFTI 229 (347)
T ss_dssp TSCCCCCHHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECCEECTTCCCB-----TTBCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHh-CCcEEEEccCceeCcCCCCC-----CcCcHHHHHHHHHHhCcccCCCCeEE
Confidence 7777788999999999999999998876 89999999999999842111 001123335555544431 13555
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC--cccHHHHHHHHHHHhCCCCCcccCCCCCC
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK--GTSVLEMVAAFEKASGKKIPLVKSGRRPG 298 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~--~~s~~e~~~~i~~~~g~~~~~~~~~~~~~ 298 (347)
+| ++++.++|+|++|+|++++.+++.. ....+++||+++++ ++|+.|+++.+.+.+|.+.++...+.++.
T Consensus 230 ~g------~g~~~~~~i~v~Dva~a~~~~~~~~--~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~ 301 (347)
T 1orr_A 230 SG------NGKQVRDVLHAEDMISLYFTALANV--SKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRES 301 (347)
T ss_dssp ES------SSCCEEECEEHHHHHHHHHHHHHTH--HHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSS
T ss_pred ec------CCcceEeeEEHHHHHHHHHHHHhcc--ccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCCC
Confidence 66 6889999999999999999998741 12356899999886 49999999999999998877665555555
Q ss_pred CchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 299 DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 299 ~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
......+|++|+++.|||+|+++++++|+++++|++++.-
T Consensus 302 ~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 302 DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred CcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 5556778999999999999999999999999999998853
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=350.78 Aligned_cols=308 Identities=20% Similarity=0.293 Sum_probs=243.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHh--CCCeEEEEeCCCchhHHHHHH---HHHhhccCCCCeEEEecCCCCHHHHHHH-Hc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL--GGYKTVVVDNLDNASEIAVAK---VKELAGYQGNNMTFHKLDLRDKAALEVV-FA 75 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~--~g~~v~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~ 75 (347)
+|+||||||+||||++|+++|++ .|++|++++|+.......... +.........++.++.+|++|.+++.++ ..
T Consensus 10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 89 (362)
T 3sxp_A 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKL 89 (362)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHTTS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhhcc
Confidence 37999999999999999999999 999999999876521100000 0000111234678999999999999998 54
Q ss_pred cCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhh
Q 040584 76 GTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGR 155 (347)
Q Consensus 76 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~ 155 (347)
++|+|||+||.... ...++...+++|+.++.+++++|++.+++ ||++||+.+||.... +++|+.+..|.++|+.
T Consensus 90 --~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~-~~~E~~~~~p~~~Y~~ 163 (362)
T 3sxp_A 90 --HFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA-PNVVGKNESPENVYGF 163 (362)
T ss_dssp --CCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS-SBCTTSCCCCSSHHHH
T ss_pred --CCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC-CCCCCCCCCCCChhHH
Confidence 79999999996542 45677889999999999999999998885 999999999998766 8999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCC-CccHHHHHHHHcCCCCceEEecccCCCCCCceee
Q 040584 156 SKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIP-NNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 234 (347)
+|.++|.+++.++.+ ++++++||+++|||+.. ..... ..+..++..+..+. .+.++| ++++.+
T Consensus 164 sK~~~E~~~~~~~~~---~~~~~lR~~~v~Gp~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~------~g~~~~ 227 (362)
T 3sxp_A 164 SKLCMDEFVLSHSND---NVQVGLRYFNVYGPREF-----YKEKTASMVLQLALGAMAFK--EVKLFE------FGEQLR 227 (362)
T ss_dssp HHHHHHHHHHHTTTT---SCEEEEEECSEESTTCG-----GGGGGSCHHHHHHHHHHTTS--EEECSG------GGCCEE
T ss_pred HHHHHHHHHHHHhcc---CCEEEEEeCceeCcCCC-----CCCcchhHHHHHHHHHHhCC--CeEEEC------CCCeEE
Confidence 999999999988654 78999999999998421 11111 22334666666654 345445 678899
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC-CCCchhhccChHHHHHh
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR-PGDAEIVYASTEKAERE 313 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~ 313 (347)
+|+|++|+|++++.+++. + ..+ +||+++++++|+.|+++.+++.+| +.++...+.. ........+|++|+++.
T Consensus 228 ~~i~v~Dva~ai~~~~~~---~-~~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 301 (362)
T 3sxp_A 228 DFVYIEDVIQANVKAMKA---Q-KSG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTILD 301 (362)
T ss_dssp ECEEHHHHHHHHHHHTTC---S-SCE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHHHHH
T ss_pred ccEEHHHHHHHHHHHHhc---C-CCC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHHHHH
Confidence 999999999999999886 2 334 999999999999999999999999 6665555544 44556778999999999
Q ss_pred cCCcccccHHHHHHHHHHHHhhCC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
|||+|+++++++|+++++||+++.
T Consensus 302 lG~~p~~~l~e~l~~~~~~~~~~~ 325 (362)
T 3sxp_A 302 LDYTPLYDLESGIKDYLPHIHAIF 325 (362)
T ss_dssp HCCCCCCCHHHHHHHHHHHHTCC-
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998763
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=347.50 Aligned_cols=296 Identities=24% Similarity=0.328 Sum_probs=246.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|||||||||||++|+++|+++|++|++++|+... .++.++.+|+.|.+.+.++++ ++|+
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----------------~~~~~~~~Dl~d~~~~~~~~~--~~d~ 80 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG----------------TGGEEVVGSLEDGQALSDAIM--GVSA 80 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS----------------SCCSEEESCTTCHHHHHHHHT--TCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC----------------CCccEEecCcCCHHHHHHHHh--CCCE
Confidence 4789999999999999999999999999999987654 267889999999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC--CCCCCCCCCCCCCCCCchhhhHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW--PKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~--~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|||+|+...... ......+++|+.++.+++++|++.++++|||+||..+||. ....+++|+.+..+.+.|+.+|.+
T Consensus 81 vih~A~~~~~~~--~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~ 158 (347)
T 4id9_A 81 VLHLGAFMSWAP--ADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLL 158 (347)
T ss_dssp EEECCCCCCSSG--GGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHH
T ss_pred EEECCcccCcch--hhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHH
Confidence 999999765432 2237789999999999999999999999999999999998 567789999999999999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeeccccc-------------CCCCCCCCCCCCC-------CCCccH-HHHHHHHcCCCCce
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPV-------------GAHPSGKGEDPRG-------IPNNLM-PFVTQVAVGRRPAL 218 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~-------------G~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~ 218 (347)
+|.+++.++++. +++++++||+++| ||.. .... ....+. .++..+..+. .+
T Consensus 159 ~E~~~~~~~~~~-~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 230 (347)
T 4id9_A 159 GEELVRFHQRSG-AMETVILRFSHTQDATELLDEDSFFSGPRF-----FLRPRIHQQQNFGNAAIAELLQSRDIGE--PS 230 (347)
T ss_dssp HHHHHHHHHHHS-SSEEEEEEECEEECGGGTTCTTSSSHHHHH-----BHHHHHHHHHHHTCHHHHHHHHHHCCSS--CC
T ss_pred HHHHHHHHHHhc-CCceEEEccceEeecccccccccccCCCCc-----ccccccccccccchhHHHHHHHHHHcCC--Ce
Confidence 999999998875 9999999999999 6521 0000 001233 3555655554 34
Q ss_pred EEecccCCCCCCceeeee----eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCC
Q 040584 219 TVFGTDYSTKDGTVVRDY----IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG 294 (347)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~----i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (347)
.++| ++.+.++| +|++|+|++++.++++ +...+++||+++++++|+.|+++.+++.+|.+.++...+
T Consensus 231 ~~~g------~~~~~~~~~~~~i~v~Dva~ai~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p 301 (347)
T 4id9_A 231 HILA------RNENGRPFRMHITDTRDMVAGILLALDH---PEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFP 301 (347)
T ss_dssp EEEE------ECTTCCBCEECEEEHHHHHHHHHHHHHC---GGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECS
T ss_pred EEeC------CCCcccCCccCcEeHHHHHHHHHHHhcC---cccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCC
Confidence 4555 57788889 9999999999999987 224579999999999999999999999999887665444
Q ss_pred CCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 295 RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 295 ~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
..+. ...+|++|+++.|||+|+++++++|+++++|++++.
T Consensus 302 ~~~~---~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 341 (347)
T 4id9_A 302 GDGV---YYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRL 341 (347)
T ss_dssp SCCC---BCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred Cccc---ccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 3333 677899999999999999999999999999998764
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=341.52 Aligned_cols=307 Identities=27% Similarity=0.407 Sum_probs=245.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|+||||||+||||++|+++|+++| ++|++++|....... +.+..+. ...++.++.+|++|.+++.+++. ++
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~--~~ 76 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNP--ANLKDLE--DDPRYTFVKGDVADYELVKELVR--KV 76 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG--GGGTTTT--TCTTEEEEECCTTCHHHHHHHHH--TC
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCch--hHHhhhc--cCCceEEEEcCCCCHHHHHHHhh--CC
Confidence 3789999999999999999999986 999999986421100 0111110 13478899999999999999996 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC-CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
|+|||+||......+.+++...+++|+.++.+++++|++.+. ++||++||..+||.....+++|+.+..+.+.|+.+|.
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~ 156 (336)
T 2hun_A 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKA 156 (336)
T ss_dssp SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHHHH
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHHHH
Confidence 999999997543334456778999999999999999998874 6999999999999876778899999889999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
++|.+++.++.+. +++++++||+++|||.. .. ..+. .++.++..+. .+.++| ++.+.++++
T Consensus 157 ~~e~~~~~~~~~~-~~~~~ilrp~~v~g~~~-----~~----~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~i 218 (336)
T 2hun_A 157 ASDMLVLGWTRTY-NLNASITRCTNNYGPYQ-----FP----EKLIPKTIIRASLGL--KIPIYG------TGKNVRDWL 218 (336)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEEECEEESTTC-----CT----TSHHHHHHHHHHTTC--CEEEET------C---CEEEE
T ss_pred HHHHHHHHHHHHh-CCCEEEEeeeeeeCcCC-----Cc----CchHHHHHHHHHcCC--CceEeC------CCCceeeeE
Confidence 9999999998875 89999999999999842 11 1233 3556666654 355556 678899999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-cccCCCCCCCchhhccChHHHHHhcCC
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-LVKSGRRPGDAEIVYASTEKAERELNW 316 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lg~ 316 (347)
|++|+|++++.+++. ...+++||+++++++|+.|+++.+++.+|.+.+ +...+..+.......+|++|+++.|||
T Consensus 219 ~v~Dva~~~~~~~~~----~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 294 (336)
T 2hun_A 219 YVEDHVRAIELVLLK----GESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKW 294 (336)
T ss_dssp EHHHHHHHHHHHHHH----CCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCC
T ss_pred EHHHHHHHHHHHHhC----CCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCC
Confidence 999999999999987 235689999999999999999999999998754 333333333334567899999999999
Q ss_pred cccccHHHHHHHHHHHHhhC
Q 040584 317 KAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~~~~~ 336 (347)
+|+++++++|+++++||+++
T Consensus 295 ~p~~~~~~~l~~~~~~~~~~ 314 (336)
T 2hun_A 295 RPKYTFDEGIKKTIDWYLKN 314 (336)
T ss_dssp CCSSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999876
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=340.77 Aligned_cols=308 Identities=29% Similarity=0.427 Sum_probs=249.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC---C---CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG---G---YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~---g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
|+||||||+||||++|+++|+++ | ++|++++|....... +.+..+. ...++.++.+|++|.+++.+++.
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~- 75 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPVD--ADPRLRFVHGDIRDAGLLARELR- 75 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGGT--TCTTEEEEECCTTCHHHHHHHTT-
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch--hhhhhcc--cCCCeEEEEcCCCCHHHHHHHhc-
Confidence 58999999999999999999997 8 999999986531100 0111111 13478899999999999999996
Q ss_pred CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhh
Q 040584 77 TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRS 156 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~s 156 (347)
++|+|||+||......+.+++...+++|+.++.+++++|++.++++||++||..+||.....+++|+.+..+.+.|+.+
T Consensus 76 -~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~s 154 (337)
T 1r6d_A 76 -GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAAS 154 (337)
T ss_dssp -TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHH
T ss_pred -CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHH
Confidence 6999999999754333345677899999999999999999999999999999999997766788999998899999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
|.++|.+++.++++. +++++++||+++|||.. .. ..+. .++.++..+. .+.++| ++++.++
T Consensus 155 K~~~e~~~~~~~~~~-g~~~~ilrp~~v~G~~~-----~~----~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~ 216 (337)
T 1r6d_A 155 KAGSDLVARAYHRTY-GLDVRITRCCNNYGPYQ-----HP----EKLIPLFVTNLLDGG--TLPLYG------DGANVRE 216 (337)
T ss_dssp HHHHHHHHHHHHHHH-CCCEEEEEECEEECTTC-----CT----TSHHHHHHHHHHTTC--CEEEET------TSCCEEE
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeeeeECCCC-----CC----CChHHHHHHHHhcCC--CcEEeC------CCCeeEe
Confidence 999999999988775 89999999999999842 11 1233 3556666554 345556 6788999
Q ss_pred eeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-cccCCCCCCCchhhccChHHHHHhc
Q 040584 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-LVKSGRRPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~l 314 (347)
++|++|+|+++..+++. ...+++||+++++++|+.|+++.+++.+|.+.+ +...+..+.....+.+|++|+++.|
T Consensus 217 ~i~v~Dva~a~~~~~~~----~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (337)
T 1r6d_A 217 WVHTDDHCRGIALVLAG----GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIEREL 292 (337)
T ss_dssp EEEHHHHHHHHHHHHHH----CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHH
T ss_pred eEeHHHHHHHHHHHHhC----CCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHc
Confidence 99999999999999987 235689999999999999999999999998753 2233323333344568999999999
Q ss_pred CCcccccHHHHHHHHHHHHhhCCC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
||+|+++++++|+++++||+++..
T Consensus 293 G~~p~~~~~e~l~~~~~~~~~~~~ 316 (337)
T 1r6d_A 293 GYRPQVSFADGLARTVRWYRENRG 316 (337)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhchh
Confidence 999999999999999999988743
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=339.94 Aligned_cols=307 Identities=25% Similarity=0.353 Sum_probs=247.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||+||||||+||||++|+++|+++ |++|++++|....... +.+..+ ...++.++.+|++|.+++.++++ ++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~--~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~--~~ 76 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK--ANLEAI---LGDRVELVVGDIADAELVDKLAA--KA 76 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG--GGTGGG---CSSSEEEEECCTTCHHHHHHHHT--TC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh--hHHhhh---ccCCeEEEECCCCCHHHHHHHhh--cC
Confidence 479999999999999999999998 8999999986532110 011111 12578899999999999999998 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCC------------CCCCCCCCC
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKV------------VPCTEEFPL 147 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~------------~~~~e~~~~ 147 (347)
|+|||+||......+..++...+++|+.++.+++++|++.++ +||++||..+||.... .+++|+.+.
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~ 155 (348)
T 1oc2_A 77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155 (348)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred CEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence 999999997643334456788999999999999999999888 9999999999986532 678898888
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
.+.+.|+.+|.++|.+++.++.+. +++++++||+++|||.. ... ..+..++..+..+.. +.+++
T Consensus 156 ~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~ilrp~~v~G~~~-----~~~---~~~~~~~~~~~~~~~--~~~~~----- 219 (348)
T 1oc2_A 156 NPSSPYSSTKAASDLIVKAWVRSF-GVKATISNCSNNYGPYQ-----HIE---KFIPRQITNILAGIK--PKLYG----- 219 (348)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECCEESTTC-----CTT---SHHHHHHHHHHHTCC--CEEET-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHh-CCCEEEEeeceeeCCCC-----Ccc---chHHHHHHHHHcCCC--ceEec-----
Confidence 899999999999999999998776 89999999999999842 111 122335666666653 34455
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-cccCCCCCCCchhhccC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-LVKSGRRPGDAEIVYAS 306 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d 306 (347)
++.+.++++|++|+|++++.+++. ...+++||+++++++|+.|+++.+.+.+|.+.+ +...+..+.......+|
T Consensus 220 -~~~~~~~~i~v~Dva~~~~~~~~~----~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 294 (348)
T 1oc2_A 220 -EGKNVRDWIHTNDHSTGVWAILTK----GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAID 294 (348)
T ss_dssp -TSCCEEECEEHHHHHHHHHHHHHH----CCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBC
T ss_pred -CCCceEeeEEHHHHHHHHHHHhhC----CCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccC
Confidence 678899999999999999999987 235689999999999999999999999998754 33333333333456789
Q ss_pred hHHHHHhcCCccccc-HHHHHHHHHHHHhhCC
Q 040584 307 TEKAERELNWKAKYG-IDEMCRDQWNWASKNP 337 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~-~~~~i~~~~~~~~~~~ 337 (347)
++|+++.|||+|+++ ++++|+++++||+++.
T Consensus 295 ~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 295 ASKLRDELGWTPQFTDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp CHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhh
Confidence 999999999999998 9999999999998763
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=342.70 Aligned_cols=319 Identities=18% Similarity=0.249 Sum_probs=246.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d 80 (347)
|+|||||||||||++|+++|+++ |++|++++|+........ ...++.++.+|+.| .+.+.++++ ++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~--~~d 69 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL---------NHPHFHFVEGDISIHSEWIEYHVK--KCD 69 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT---------TCTTEEEEECCTTTCSHHHHHHHH--HCS
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh---------cCCCeEEEeccccCcHHHHHhhcc--CCC
Confidence 58999999999999999999998 899999999866532110 13478899999998 456888887 599
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC-------CCCCch
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-------QAMNPY 153 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~-------~~~~~Y 153 (347)
+|||+||.........++...+++|+.++.+++++|++.+ ++||++||..+||.....+++|+.+. .|.+.|
T Consensus 70 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y 148 (345)
T 2bll_A 70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (345)
T ss_dssp EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred EEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCccccc
Confidence 9999999754323344667789999999999999999988 89999999999998776677887653 344589
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
+.+|.++|.+++.++++. +++++++||+++|||...............+..++..+..+. .+.+++ ++++.
T Consensus 149 ~~sK~~~e~~~~~~~~~~-~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~g~~~ 219 (345)
T 2bll_A 149 SVSKQLLDRVIWAYGEKE-GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGS--PIKLID------GGKQK 219 (345)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTC--CEEEGG------GSCCE
T ss_pred HHHHHHHHHHHHHHHHhc-CCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCC--CcEEEC------CCCEE
Confidence 999999999999988775 899999999999998532110000000112334666666665 345555 67889
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC-cccHHHHHHHHHHHhCCCCCcccCCCCC---------------
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK-GTSVLEMVAAFEKASGKKIPLVKSGRRP--------------- 297 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------- 297 (347)
++|+|++|+|++++.+++... ....+++||+++++ .+|+.|+++.+++.+|.+.+....+...
T Consensus 220 ~~~i~v~Dva~a~~~~~~~~~-~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (345)
T 2bll_A 220 RCFTDIRDGIEALYRIIENAG-NRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGY 298 (345)
T ss_dssp EECEEHHHHHHHHHHHHHCGG-GTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC----------
T ss_pred EEEEEHHHHHHHHHHHHhhcc-ccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccc
Confidence 999999999999999998621 11456899999886 8999999999999999765432222111
Q ss_pred CCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCCCCCC
Q 040584 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESP 343 (347)
Q Consensus 298 ~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~~~~~ 343 (347)
.......+|++|+++.|||+|+++++++|+++++||+++....++|
T Consensus 299 ~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~~~~~ 344 (345)
T 2bll_A 299 QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKP 344 (345)
T ss_dssp --CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCTTC--
T ss_pred cchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCCCCCC
Confidence 1224567899999999999999999999999999999887766665
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=369.28 Aligned_cols=338 Identities=52% Similarity=0.929 Sum_probs=259.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|++++|.........+.+..+. ..++.++.+|++|.+++.+++++.++|+
T Consensus 11 ~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~~~D~ 87 (699)
T 1z45_A 11 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT---KHHIPFYEVDLCDRKGLEKVFKEYKIDS 87 (699)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH---TSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc---CCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence 4799999999999999999999999999999987654332223332221 3468889999999999999998556999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCC----CCCCCCCCCCCCCCchhhhH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPK----VVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~----~~~~~e~~~~~~~~~Y~~sK 157 (347)
|||+||........+.+...+++|+.++.+++++|++.++++||++||.++||... ..+++|+.+..+.+.|+.+|
T Consensus 88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK 167 (699)
T 1z45_A 88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTK 167 (699)
T ss_dssp EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHH
T ss_pred EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCCChHHHHH
Confidence 99999976433334456678999999999999999998899999999999998642 25678888888899999999
Q ss_pred HHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 158 LFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 158 ~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
.++|.+++.++.+. .+++++++||+++|||++.+. |....+....+.+++.+...+....+.++|.....+++++.++
T Consensus 168 ~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 247 (699)
T 1z45_A 168 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 247 (699)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCeeEe
Confidence 99999999887653 489999999999999977654 4333233345667666666554333444442111124788999
Q ss_pred eeeHHHHHHHHHHHHHhcC---CCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHH
Q 040584 236 YIHVVDLADGHIAALRKLD---DPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAER 312 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~---~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 312 (347)
|||++|+|++++.+++... .....+++||+++++.+|+.|+++.+++.+|.+.++...+..........+|++|+++
T Consensus 248 ~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ka~~ 327 (699)
T 1z45_A 248 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKR 327 (699)
T ss_dssp EEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHHH
T ss_pred eEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccCCHHHHHH
Confidence 9999999999999987521 1122358999999999999999999999999887665544444445567899999999
Q ss_pred hcCCcccccHHHHHHHHHHHHhhCCCCCCC
Q 040584 313 ELNWKAKYGIDEMCRDQWNWASKNPYGYES 342 (347)
Q Consensus 313 ~lg~~p~~~~~~~i~~~~~~~~~~~~~~~~ 342 (347)
.|||+|+++++++|+++++||++++..|.-
T Consensus 328 ~LG~~p~~~l~egl~~~~~w~~~~~~~~~~ 357 (699)
T 1z45_A 328 ELKWQTELQVEDSCKDLWKWTTENPFGYQL 357 (699)
T ss_dssp HTCCCCCCCHHHHHHHHHHHHHHCTTCSCC
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhCCcchhh
Confidence 999999999999999999999999887764
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=344.81 Aligned_cols=317 Identities=22% Similarity=0.259 Sum_probs=246.8
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhcc----CCCCeEEEecCCCCHHHHHHHHcc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY----QGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
|+|+||||||+||||++|+++|+++|++|++++|+...... ..+..+... ...++.++.+|++|.+++.+++++
T Consensus 23 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (375)
T 1t2a_A 23 MRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNT--GRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINE 100 (375)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--TTTGGGC---------CEEEEECCTTCHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccch--hhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHh
Confidence 56899999999999999999999999999999987653100 000000000 124688899999999999999985
Q ss_pred CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC---CeEEEeccccccCCCCCCCCCCCCCCCCCCch
Q 040584 77 TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC---KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPY 153 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~---~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y 153 (347)
.++|+|||+||......+.+++...+++|+.++.+++++|++.++ ++||++||..+||.....+++|+.+..|.+.|
T Consensus 101 ~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y 180 (375)
T 1t2a_A 101 VKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPY 180 (375)
T ss_dssp HCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHH
T ss_pred cCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCCCChh
Confidence 457999999997543333456778899999999999999999887 79999999999998777789999998899999
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
+.+|.++|.+++.++.++ +++++++|++++|||.. ........+..++.++..+.... ..+| ++++.
T Consensus 181 ~~sK~~~e~~~~~~~~~~-~~~~~i~r~~~~~gp~~-----~~~~~~~~~~~~~~~~~~g~~~~-~~~g------~~~~~ 247 (375)
T 1t2a_A 181 GAAKLYAYWIVVNFREAY-NLFAVNGILFNHESPRR-----GANFVTRKISRSVAKIYLGQLEC-FSLG------NLDAK 247 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCEEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHHTSCSC-EEES------CTTCE
T ss_pred HHHHHHHHHHHHHHHHHh-CCCEEEEecccccCCCC-----CCCcchHHHHHHHHHHHcCCCce-eEeC------CCCce
Confidence 999999999999998775 89999999999999842 11100111233555556665332 2345 67899
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcc-------------------cCC
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-------------------KSG 294 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~-------------------~~~ 294 (347)
++|+|++|+|++++.+++.. . +++||+++++++|+.|+++.+++.+|.+.++. ..+
T Consensus 248 ~~~i~v~Dva~a~~~~~~~~---~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 322 (375)
T 1t2a_A 248 RDWGHAKDYVEAMWLMLQND---E--PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDL 322 (375)
T ss_dssp ECCEEHHHHHHHHHHHHHSS---S--CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECG
T ss_pred eeeEEHHHHHHHHHHHHhcC---C--CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCc
Confidence 99999999999999999862 1 38999999999999999999999999864321 001
Q ss_pred --CCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 295 --RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 295 --~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
.++.......+|++|+++.|||+|+++++++|+++++|+++..
T Consensus 323 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 367 (375)
T 1t2a_A 323 KYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 367 (375)
T ss_dssp GGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCCcccchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhh
Confidence 1223334566899999999999999999999999999998753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=343.53 Aligned_cols=313 Identities=20% Similarity=0.256 Sum_probs=246.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|++++|+..........+. ...++.++.+|+.|.+++.++++..++|+
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 83 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-----VADGMQSEIGDIRDQNKLLESIREFQPEI 83 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-----TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc-----cCCceEEEEccccCHHHHHHHHHhcCCCE
Confidence 4799999999999999999999999999999998765433222211 13478899999999999999998545899
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCC-CCCCCCCCCCCCCchhhhHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKV-VPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~-~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|||+||........+++...+++|+.++.+++++|++.+ +++||++||..+||.... .+++|+.+..+.+.|+.+|.+
T Consensus 84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~ 163 (357)
T 1rkx_A 84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGC 163 (357)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHH
T ss_pred EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHHH
Confidence 999999643323445677889999999999999999886 889999999999987553 467888888889999999999
Q ss_pred HHHHHHHHhhhcC--------CceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCC
Q 040584 160 IEEICRDVHRSDS--------EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 160 ~e~~~~~~~~~~~--------~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
+|.+++.++.++. +++++++||+++|||.. .. ...+. .++..+..+.. +.+ + ++
T Consensus 164 ~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~-----~~---~~~~~~~~~~~~~~g~~--~~~-~------~~ 226 (357)
T 1rkx_A 164 AELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD-----WA---LDRIVPDILRAFEQSQP--VII-R------NP 226 (357)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTC-----CC---SSCHHHHHHHHHHTTCC--EEC-S------CT
T ss_pred HHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCC-----Cc---cccHHHHHHHHHhcCCC--EEE-C------CC
Confidence 9999999876542 89999999999999842 11 11244 45666666653 332 2 46
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcC-CCCCCCeeEEccCC--CcccHHHHHHHHHHHhCCCCCcccCCC-CCCCchhhccC
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLD-DPKVGCEVYNLGTG--KGTSVLEMVAAFEKASGKKIPLVKSGR-RPGDAEIVYAS 306 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~-~~~~~~~~~nv~~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d 306 (347)
++.++|+|++|+|++++.+++... .+...+++||++++ +++|+.|+++.+.+.+|.+.++...+. .+.......+|
T Consensus 227 ~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 306 (357)
T 1rkx_A 227 HAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLD 306 (357)
T ss_dssp TCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBC
T ss_pred CCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCC
Confidence 788999999999999999887421 11234689999874 689999999999999998766443321 23334567799
Q ss_pred hHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 307 TEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
++|+++.|||+|+++++++|+++++||+++
T Consensus 307 ~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 336 (357)
T 1rkx_A 307 CSKAKMQLGWHPRWNLNTTLEYIVGWHKNW 336 (357)
T ss_dssp CHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=344.12 Aligned_cols=301 Identities=26% Similarity=0.435 Sum_probs=242.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|||||||||||++|+++|+++|++|++++|+..........+..+ ....+++++.+|+. ++|
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~------------~~d 71 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKF--LEKPVLELEERDLS------------DVR 71 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEE--ECSCGGGCCHHHHT------------TEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhh--ccCCCeeEEeCccc------------cCC
Confidence 3689999999999999999999999999999998765210000000000 00123344444443 599
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+|+.........++...++ |+.++.+++++|++.++++|||+||..+||.....+++|+.+..|.+.|+.+|.++
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~ 150 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGL 150 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHHHHH
Confidence 99999997654445566677788 99999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHhhhcCCc-eEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEW-KIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~-~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++.++.+. ++ +++++||+++|||.. .. ...+..++..+..+. .+.++| ++++.++|+|+
T Consensus 151 E~~~~~~~~~~-~~~~~~ilRp~~v~G~~~-----~~---~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~v~v 213 (321)
T 3vps_A 151 EMVAGAHQRAS-VAPEVGIVRFFNVYGPGE-----RP---DALVPRLCANLLTRN--ELPVEG------DGEQRRDFTYI 213 (321)
T ss_dssp HHHHHHHHHSS-SSCEEEEEEECEEECTTC-----CT---TSHHHHHHHHHHHHS--EEEEET------TSCCEECEEEH
T ss_pred HHHHHHHHHHc-CCCceEEEEeccccCcCC-----CC---CChHHHHHHHHHcCC--CeEEeC------CCCceEceEEH
Confidence 99999998875 88 999999999999842 11 112334566666654 455666 68899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcc-
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKA- 318 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p- 318 (347)
+|+|+++..++.+ +. .+ +||+++++++|+.|+++.+. .+|.+.++...+..+.......+|++|+++.|||+|
T Consensus 214 ~Dva~~~~~~~~~---~~-~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 287 (321)
T 3vps_A 214 TDVVDKLVALANR---PL-PS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSG 287 (321)
T ss_dssp HHHHHHHHHGGGS---CC-CS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHhc---CC-CC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCC
Confidence 9999999999987 22 24 99999999999999999999 999988777666666677788999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCCC
Q 040584 319 KYGIDEMCRDQWNWASKNPYG 339 (347)
Q Consensus 319 ~~~~~~~i~~~~~~~~~~~~~ 339 (347)
+++++++|+++++||+++...
T Consensus 288 ~~~~~~~l~~~~~~~~~~~~~ 308 (321)
T 3vps_A 288 GIGIEEGIRLTLEWWQSRDLD 308 (321)
T ss_dssp CCCHHHHHHHHHHHHHTSCTT
T ss_pred cCCHHHHHHHHHHHHHhCCCc
Confidence 889999999999999988654
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-47 Score=348.75 Aligned_cols=311 Identities=30% Similarity=0.446 Sum_probs=240.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+||||||+||||++|+++|+++| ++|++++|+........ . ...+++++.+|+.|.+++.++++ ++|
T Consensus 32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l---~-----~~~~v~~~~~Dl~d~~~l~~~~~--~~d 101 (377)
T 2q1s_A 32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINV---P-----DHPAVRFSETSITDDALLASLQD--EYD 101 (377)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGS---C-----CCTTEEEECSCTTCHHHHHHCCS--CCS
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhc---c-----CCCceEEEECCCCCHHHHHHHhh--CCC
Confidence 4789999999999999999999999 99999998765421100 0 13478899999999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCCCCCCCCC--CCC---CC-CCCCch
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGWPKVVPCT--EEF---PL-QAMNPY 153 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~~~~~~~~--e~~---~~-~~~~~Y 153 (347)
+|||+||......+..++...+++|+.++.+++++|++. ++++||++||..+||.....+++ |+. +. .|.++|
T Consensus 102 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y 181 (377)
T 2q1s_A 102 YVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPY 181 (377)
T ss_dssp EEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHH
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCch
Confidence 999999975433334567789999999999999999998 88999999999999987666777 877 66 788999
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCC-CC---CCCCCCCccH-HHHHHHHcCCCCceEEecccCCCC
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GE---DPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
+.+|.++|.+++.++.+. +++++++||+++|||...+. |. ........+. .++..+..+.. +.++|
T Consensus 182 ~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~g------ 252 (377)
T 2q1s_A 182 SMSKIFGEFYSVYYHKQH-QLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMP--LPLEN------ 252 (377)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCC--CCCSG------
T ss_pred HHHHHHHHHHHHHHHHHh-CCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCC--eEEeC------
Confidence 999999999999988775 89999999999999853110 00 1000001233 35666666653 33344
Q ss_pred CCceeeeeeeHHHHHHH-HHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCch-hhccC
Q 040584 229 DGTVVRDYIHVVDLADG-HIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE-IVYAS 306 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a-~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~d 306 (347)
++++.++|+|++|+|++ ++.+++. +. .+ +||+++++++|+.|+++.+.+.+|.+.++...+.++.... ...+|
T Consensus 253 ~g~~~~~~i~v~Dva~a~i~~~~~~---~~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d 327 (377)
T 2q1s_A 253 GGVATRDFIFVEDVANGLIACAADG---TP-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGS 327 (377)
T ss_dssp GGCCEECCEEHHHHHHHHHHHHHHC---CT-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCC
T ss_pred CCCeEEeeEEHHHHHHHHHHHHHhc---CC-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccC
Confidence 57889999999999999 9999887 22 44 9999999999999999999999998876555554444445 67899
Q ss_pred hHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 307 TEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
++|+++.|||+|+++++++|+++++||+++
T Consensus 328 ~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 357 (377)
T 2q1s_A 328 PEKARRELGFSADVSIDDGLRKTIEWTKAN 357 (377)
T ss_dssp CHHHHHHHCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=338.75 Aligned_cols=300 Identities=20% Similarity=0.305 Sum_probs=240.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|+++.|+. .+|+.|.+++.++++..++|+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~------------------------~~D~~d~~~~~~~~~~~~~d~ 58 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD------------------------ELNLLDSRAVHDFFASERIDQ 58 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT------------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc------------------------cCCccCHHHHHHHHHhcCCCE
Confidence 47999999999999999999999999999887641 269999999999997445999
Q ss_pred EEEccccccC-CccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC----CCCCC-Cchhh
Q 040584 82 VIHFAGLKAV-GESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF----PLQAM-NPYGR 155 (347)
Q Consensus 82 vih~a~~~~~-~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~----~~~~~-~~Y~~ 155 (347)
|||+|+.... .....++...+++|+.++.+++++|++.++++||++||..+||.....+++|++ +..|. +.|+.
T Consensus 59 vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~ 138 (321)
T 1e6u_A 59 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 138 (321)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHH
Confidence 9999997532 123456678899999999999999999999999999999999987777888886 44553 58999
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcC---CCCceEEecccCCCCCCc
Q 040584 156 SKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVG---RRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~g~~~~~~~~~ 231 (347)
+|.++|.+++.++++. +++++++||+++|||...+. .....+. .++.++..+ ....+.++| +++
T Consensus 139 sK~~~E~~~~~~~~~~-~~~~~ilrp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~g~ 206 (321)
T 1e6u_A 139 AKIAGIKLCESYNRQY-GRDYRSVMPTNLYGPHDNFH-----PSNSHVIPALLRRFHEATAQKAPDVVVWG------SGT 206 (321)
T ss_dssp HHHHHHHHHHHHHHHH-CCEEEEEEECEEESTTCCCC-----TTCSSHHHHHHHHHHHHHHHTCSEEEEES------CSC
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEeCCcCCcCCCCC-----CCCCccHHHHHHHHHHhhhcCCCceEEcC------CCC
Confidence 9999999999988775 89999999999999853211 1111233 355555432 112455566 688
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCC-----CCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccC
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDP-----KVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYAS 306 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~-----~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d 306 (347)
+.++|+|++|+|++++.++++.... ...+++||+++++++|+.|+++.+++.+|.+.++...+..+.......+|
T Consensus 207 ~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d 286 (321)
T 1e6u_A 207 PMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLD 286 (321)
T ss_dssp CEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBC
T ss_pred EEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCC
Confidence 9999999999999999999862110 01258999999999999999999999999887655545444445567899
Q ss_pred hHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 307 TEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
++|+++ |||+|+++++++|+++++||+++..
T Consensus 287 ~~k~~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 287 VTRLHQ-LGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp CHHHHH-TTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHh-cCCccCCcHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999998753
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-46 Score=342.80 Aligned_cols=305 Identities=21% Similarity=0.259 Sum_probs=246.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||+||||||+||||++|+++|+++||+|++++|+....... ...+++++.+|+.|.+++.++++ ++|+
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~v~~~~~Dl~d~~~~~~~~~--~~d~ 96 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE----------DMFCDEFHLVDLRVMENCLKVTE--GVDH 96 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG----------GGTCSEEEECCTTSHHHHHHHHT--TCSE
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh----------ccCCceEEECCCCCHHHHHHHhC--CCCE
Confidence 58999999999999999999999999999999976543210 02367899999999999999998 6999
Q ss_pred EEEccccccCCcc-ccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCC-----CCCCCCCC--CCCCCCch
Q 040584 82 VIHFAGLKAVGES-VQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPK-----VVPCTEEF--PLQAMNPY 153 (347)
Q Consensus 82 vih~a~~~~~~~~-~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~-----~~~~~e~~--~~~~~~~Y 153 (347)
|||+|+....... .+++...+++|+.++.+++++|++.++++||++||..+|+... ..+++|++ +..+.+.|
T Consensus 97 Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y 176 (379)
T 2c5a_A 97 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF 176 (379)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHH
T ss_pred EEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChh
Confidence 9999997543222 4567789999999999999999999999999999999998532 23467766 66778899
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
+.+|.++|.+++.++++. +++++++||+++|||.....+ +....+..++.++..+.. .+.++| ++++.
T Consensus 177 ~~sK~~~E~~~~~~~~~~-gi~~~ilrp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~g------~g~~~ 244 (379)
T 2c5a_A 177 GLEKLATEELCKHYNKDF-GIECRIGRFHNIYGPFGTWKG----GREKAPAAFCRKAQTSTD-RFEMWG------DGLQT 244 (379)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCEEEEEEECCEECTTSCCSS----SCCCHHHHHHHHHHHCSS-CEEEES------CSCCE
T ss_pred HHHHHHHHHHHHHHHHHH-CCCEEEEEeCceeCcCCCccc----ccccHHHHHHHHHHhCCC-ceEEeC------CCCee
Confidence 999999999999988775 899999999999998432110 111123346666666543 355566 67889
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHh
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERE 313 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 313 (347)
++|+|++|+|++++.+++. + .+++||+++++.+|+.|+++.+.+.+|.+.++...+... ......+|++|+++.
T Consensus 245 ~~~i~v~Dva~ai~~~l~~---~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~-~~~~~~~d~~k~~~~ 318 (379)
T 2c5a_A 245 RSFTFIDECVEGVLRLTKS---D--FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEK 318 (379)
T ss_dssp ECCEEHHHHHHHHHHHHHS---S--CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHHHHH
T ss_pred EEEEEHHHHHHHHHHHhhc---c--CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC-CcccccCCHHHHHHH
Confidence 9999999999999999986 2 358999999999999999999999999887655444322 234567899999999
Q ss_pred cCCcccccHHHHHHHHHHHHhhC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|||+|+++++++|+++++||+++
T Consensus 319 lG~~p~~~l~e~l~~~~~~~~~~ 341 (379)
T 2c5a_A 319 LGWAPNMRLKEGLRITYFWIKEQ 341 (379)
T ss_dssp HSCCCCCCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999765
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=333.56 Aligned_cols=278 Identities=15% Similarity=0.159 Sum_probs=233.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|||||||||||+++++.|+++||+|++++|. .+|+.|.+.+.++++..++|
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-------------------------~~D~~d~~~~~~~~~~~~~d 58 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKK-------------------------LLDITNISQVQQVVQEIRPH 58 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-------------------------TSCTTCHHHHHHHHHHHCCS
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-------------------------ccCCCCHHHHHHHHHhcCCC
Confidence 55699999999999999999999999999999872 27999999999999855699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+||........+++...+++|+.++.+++++|++.++ ||||+||..+||.....+++|+++..|.+.|+.+|.++
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~ 137 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAG 137 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHHH
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 99999998765445567888999999999999999999988 89999999999988888999999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++.+.. +++++||+++|||.. ..+.+ ++..+..+. .+.++| ++.++++|+
T Consensus 138 E~~~~~~~~-----~~~ilR~~~v~G~~~-----------~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~i~v 191 (287)
T 3sc6_A 138 EQFVKELHN-----KYFIVRTSWLYGKYG-----------NNFVKTMIRLGKERE--EISVVA--------DQIGSPTYV 191 (287)
T ss_dssp HHHHHHHCS-----SEEEEEECSEECSSS-----------CCHHHHHHHHHTTCS--EEEEEC--------SCEECCEEH
T ss_pred HHHHHHhCC-----CcEEEeeeeecCCCC-----------CcHHHHHHHHHHcCC--CeEeec--------CcccCceEH
Confidence 999998743 579999999999841 12333 455544443 455443 488999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccC-----CCCCCCchhhccChHHHHHhc
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS-----GRRPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~-----~~~~~~~~~~~~d~~k~~~~l 314 (347)
+|+|+++..++++ +. +++||+++++++|+.|+++.+++.+|.+.++... +..........+|++|++ .|
T Consensus 192 ~Dva~~~~~~~~~---~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~l 265 (287)
T 3sc6_A 192 ADLNVMINKLIHT---SL--YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LN 265 (287)
T ss_dssp HHHHHHHHHHHTS---CC--CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HT
T ss_pred HHHHHHHHHHHhC---CC--CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hh
Confidence 9999999999987 22 6899999999999999999999999987665433 233344556789999998 89
Q ss_pred CCcccccHHHHHHHHHHHHhhC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~ 336 (347)
||.|.++++++|+++++|++.+
T Consensus 266 g~~p~~~~~~~l~~~~~~~~~~ 287 (287)
T 3sc6_A 266 GFLQMPSWEEGLERFFIETKSH 287 (287)
T ss_dssp TCCCCCBHHHHHHHHHHHTC--
T ss_pred CCCCCccHHHHHHHHHHHHhcC
Confidence 9999999999999999998754
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=335.25 Aligned_cols=306 Identities=17% Similarity=0.213 Sum_probs=238.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|+|+||||||+||||++|+++|+++ |++|++++|+...... . .++.++.+|+.|.+++.+++++.+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~-----------~~~~~~~~D~~d~~~~~~~~~~~~ 68 (312)
T 2yy7_A 1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV-V-----------NSGPFEVVNALDFNQIEHLVEVHK 68 (312)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH-H-----------HSSCEEECCTTCHHHHHHHHHHTT
T ss_pred CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc-c-----------CCCceEEecCCCHHHHHHHHhhcC
Confidence 8899999999999999999999999 8999999987665321 1 156789999999999999998556
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCC-CCCCCCCCCCCCCCchhhhH
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPK-VVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~-~~~~~e~~~~~~~~~Y~~sK 157 (347)
+|+|||+||.... ....++...+++|+.++.+++++|++.++++||++||..+||... ..+.+|+.+..|.++|+.+|
T Consensus 69 ~d~vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK 147 (312)
T 2yy7_A 69 ITDIYLMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISK 147 (312)
T ss_dssp CCEEEECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHH
T ss_pred CCEEEECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHH
Confidence 9999999996542 223566788999999999999999998899999999999998743 35678888888999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
.++|.+++.++.+. +++++++||+++|||...+. . .....+...+.+...+. .+..++ ++++.++|+
T Consensus 148 ~~~e~~~~~~~~~~-~~~~~~lrp~~v~g~~~~~~-~---~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~i 214 (312)
T 2yy7_A 148 QAGERWCEYYHNIY-GVDVRSIRYPGLISWSTPPG-G---GTTDYAVDIFYKAIADK--KYECFL------SSETKMPMM 214 (312)
T ss_dssp HHHHHHHHHHHHHH-CCEEECEEECEEECSSSCCC-S---CTTTHHHHHHHHHHHTS--EEEESS------CTTCCEEEE
T ss_pred HHHHHHHHHHHHhc-CCcEEEEeCCeEecCCCCCC-C---chhhhHHHHHHHHHcCC--CeEEec------CCCceeeee
Confidence 99999999988775 89999999999999742111 0 11122444444433333 244445 678899999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCC---CchhhccChHHHHHhc
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPG---DAEIVYASTEKAEREL 314 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~d~~k~~~~l 314 (347)
|++|+|+++..++++.......+++||+++ +.+|+.|+++.+.+.+|. ..+...+.... ......+|++|+++.|
T Consensus 215 ~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (312)
T 2yy7_A 215 YMDDAIDATINIMKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPDFRQKIADSWPASIDDSQAREDW 292 (312)
T ss_dssp EHHHHHHHHHHHHHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCCTHHHHHTTSCSSBCCHHHHHHH
T ss_pred eHHHHHHHHHHHHhCcccccccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccCccccccccccccCCHHHHHHHc
Confidence 999999999999987211001248999986 789999999999999983 22222221110 0112467999999999
Q ss_pred CCcccccHHHHHHHHHHHHh
Q 040584 315 NWKAKYGIDEMCRDQWNWAS 334 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~ 334 (347)
||+|+++++++|+++++||+
T Consensus 293 G~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 293 DWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp CCCCCCCHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999985
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=341.02 Aligned_cols=317 Identities=21% Similarity=0.257 Sum_probs=243.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH-HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE-IAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
||+||||||+||||++++++|+++|++|++++|+..... ...+.+.........++.++.+|++|.+++.+++++.++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999998754311 1111111000001247888999999999999999854589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC---CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC---KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~---~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK 157 (347)
+|||+||........+++...+++|+.++.+++++|++.++ ++||++||..+||.....+++|+.+..|.+.|+.+|
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~Y~~sK 160 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCChHHHHH
Confidence 99999997655445566777889999999999999999887 799999999999987777889999988999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
.++|.+++.++.++ +++++++|++++|||.. ........+..++..+..|.... ..+| ++++.++|+
T Consensus 161 ~~~e~~~~~~~~~~-~~~~~~~r~~~~~gp~~-----~~~~~~~~~~~~~~~~~~g~~~~-~~~g------~~~~~~~~i 227 (372)
T 1db3_A 161 LYAYWITVNYRESY-GMYACNGILFNHESPRR-----GETFVTRKITRAIANIAQGLESC-LYLG------NMDSLRDWG 227 (372)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHTTSCCC-EEES------CTTCEECCE
T ss_pred HHHHHHHHHHHHHh-CCCeEEEEECCccCCCC-----CCcchhhHHHHHHHHHHcCCCCc-eeec------CCCceeeee
Confidence 99999999998775 89999999999999842 11100111233455556665332 3345 678999999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCccc-------------------------
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK------------------------- 292 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~------------------------- 292 (347)
|++|+|++++.++++ + .+++||+++++++|+.|+++.+++.+|.+.++..
T Consensus 228 ~v~Dva~a~~~~~~~---~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 302 (372)
T 1db3_A 228 HAKDYVKMQWMMLQQ---E--QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDV 302 (372)
T ss_dssp EHHHHHHHHHHTTSS---S--SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCE
T ss_pred EHHHHHHHHHHHHhc---C--CCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccc
Confidence 999999999988875 1 1389999999999999999999999997543210
Q ss_pred ----CC--CCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 293 ----SG--RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 293 ----~~--~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
.+ .++.......+|++|+++.|||+|+++++++|+++++||+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 352 (372)
T 1db3_A 303 IIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEA 352 (372)
T ss_dssp EEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred eeeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHh
Confidence 01 122333456689999999999999999999999999999775
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=335.31 Aligned_cols=314 Identities=22% Similarity=0.264 Sum_probs=248.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|++++|+...... ..+..+. ...++.++.+|++|.+++.+++++.++|+
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELG--IENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTT--CTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhcc--ccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 4899999999999999999999999999999998765321 1122221 12468889999999999999998545799
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC-CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
|||+||......+.+++...+++|+.++.+++++|++.++ ++||++||..+||.....+++|+.+..+.++|+.+|.++
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 158 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFG 158 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHH
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHHHHH
Confidence 9999997643334566778999999999999999998886 799999999999988777889999988999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|.+++.++.++ +++++++|++++|||+. ........+..++.++..+.... ..+| ++.+.++++|++
T Consensus 159 e~~~~~~~~~~-~~~~~~~r~~~~~gpg~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~v~ 225 (345)
T 2z1m_A 159 HWITVNYREAY-NMFACSGILFNHESPLR-----GIEFVTRKITYSLARIKYGLQDK-LVLG------NLNAKRDWGYAP 225 (345)
T ss_dssp HHHHHHHHHHH-CCCEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHTTSCSC-EEES------CTTCEECCEEHH
T ss_pred HHHHHHHHHHh-CCceEeeeeeeecCCCC-----CCcchhHHHHHHHHHHHcCCCCe-eeeC------CCCceeeeEEHH
Confidence 99999998876 88999999999999842 11111111222344555554322 2334 577889999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcc-------------------cC--CCCCCC
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV-------------------KS--GRRPGD 299 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~-------------------~~--~~~~~~ 299 (347)
|+|+++..++++. .+++||+++++++|+.|+++.+++.+|.+.++. .. ..++..
T Consensus 226 Dva~a~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 2z1m_A 226 EYVEAMWLMMQQP-----EPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAE 300 (345)
T ss_dssp HHHHHHHHHHTSS-----SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSC
T ss_pred HHHHHHHHHHhCC-----CCceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCC
Confidence 9999999999761 137999999999999999999999999874321 00 012223
Q ss_pred chhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 300 ~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
.....+|++|+++.|||+|+++++++|+++++|++++.
T Consensus 301 ~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 338 (345)
T 2z1m_A 301 VDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRV 338 (345)
T ss_dssp CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHh
Confidence 34556799999999999999999999999999998764
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=339.13 Aligned_cols=324 Identities=24% Similarity=0.267 Sum_probs=244.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH-------------HHHHHHhhccCCCCeEEEecCCCCHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA-------------VAKVKELAGYQGNNMTFHKLDLRDKA 68 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Dl~d~~ 68 (347)
+++||||||+||||++|+++|+++|++|++++|........ .+.+..+......++.++.+|++|.+
T Consensus 11 ~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~~ 90 (404)
T 1i24_A 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 90 (404)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCHH
Confidence 47999999999999999999999999999998864321100 11111111111357889999999999
Q ss_pred HHHHHHccCCCcEEEEccccccCCccccCcc---hhhhhhhhHHHHHHHHHHHcCC-CeEEEeccccccCCCCCCCCCCC
Q 040584 69 ALEVVFAGTKFDAVIHFAGLKAVGESVQKPL---PYFDNNLTGTITLLEVMAAHGC-KNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 69 ~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~---~~~~~nv~~~~~l~~~~~~~~~-~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++.+++++.++|+|||+||.........++. ..+++|+.++.+++++|++.++ ++||++||.++||... .+++|+
T Consensus 91 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~E~ 169 (404)
T 1i24_A 91 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIEEG 169 (404)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBCSS
T ss_pred HHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCCcc
Confidence 9999998445999999999754322233332 4789999999999999999887 5999999999998654 456665
Q ss_pred --------------CCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCC--------CCCCC-CC
Q 040584 145 --------------FPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGE--------DPRGI-PN 201 (347)
Q Consensus 145 --------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~--------~~~~~-~~ 201 (347)
.+..+.++|+.+|.++|.+++.++.++ +++++++||++||||.....+. ...+. ..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~ 248 (404)
T 1i24_A 170 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 248 (404)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCC
T ss_pred ccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc-CCeEEEEecceeeCCCCCccccccccccccccccchhh
Confidence 366788999999999999999988776 8999999999999995321100 00111 12
Q ss_pred ccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCC--eeEEccCCCcccHHHHHHH
Q 040584 202 NLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGC--EVYNLGTGKGTSVLEMVAA 279 (347)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~--~~~nv~~~~~~s~~e~~~~ 279 (347)
.+..++.++..+. .+.++| ++++.++|+|++|+|++++.++++ +...+ ++||+++ +++|+.|+++.
T Consensus 249 ~~~~~~~~~~~g~--~~~~~g------~g~~~~~~i~v~Dva~a~~~~l~~---~~~~g~~~~yni~~-~~~s~~e~~~~ 316 (404)
T 1i24_A 249 ALNRFCVQAAVGH--PLTVYG------KGGQTRGYLDIRDTVQCVEIAIAN---PAKAGEFRVFNQFT-EQFSVNELASL 316 (404)
T ss_dssp HHHHHHHHHHHTC--CEEEET------TSCCEEEEEEHHHHHHHHHHHHHS---CCCTTCEEEEEECS-EEEEHHHHHHH
T ss_pred HHHHHHHHHHcCC--eeEEeC------CCCceECcEEHHHHHHHHHHHHhC---cccCCCceEEEECC-CCCcHHHHHHH
Confidence 2445677777765 345556 678999999999999999999987 22334 7999987 88999999999
Q ss_pred HHHH---hCCCCCcccCCCCCC--CchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCCC
Q 040584 280 FEKA---SGKKIPLVKSGRRPG--DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340 (347)
Q Consensus 280 i~~~---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~~ 340 (347)
+++. +|.+.++...+.... ......+|++|++ .|||+|+++++++++++++|++.++..+
T Consensus 317 i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~~~ 381 (404)
T 1i24_A 317 VTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDRV 381 (404)
T ss_dssp HHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhhcc
Confidence 9998 787766544443222 2234567999997 6999999999999999999998765443
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=338.00 Aligned_cols=306 Identities=25% Similarity=0.386 Sum_probs=245.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCc--hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDN--ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+||||||+||||++|+++|+++ |++|++++|... .... +..+. ...++.++.+|++|.+++.++++..++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~----~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES----LSDIS--ESNRYNFEHADICDSAEITRIFEQYQP 74 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGG----GTTTT--TCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhh----hhhhh--cCCCeEEEECCCCCHHHHHHHHhhcCC
Confidence 47999999999999999999998 799999998652 1111 11111 134788999999999999999974459
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc--CCC-------eEEEeccccccCCCCC--C--------C
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH--GCK-------NLVFSSSATAYGWPKV--V--------P 140 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~-------~iv~~SS~~~yg~~~~--~--------~ 140 (347)
|+|||+||......+.+++...+++|+.++.+++++|++. +++ +||++||..+||.... . +
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~ 154 (361)
T 1kew_A 75 DAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPL 154 (361)
T ss_dssp SEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCC
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCC
Confidence 9999999976433344567889999999999999999988 876 9999999999986532 1 7
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceE
Q 040584 141 CTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALT 219 (347)
Q Consensus 141 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 219 (347)
++|+.+..+.+.|+.+|.++|.+++.++.++ +++++++||++||||.. .. ..+. .++.++..+. .+.
T Consensus 155 ~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~vrp~~v~G~~~-----~~----~~~~~~~~~~~~~~~--~~~ 222 (361)
T 1kew_A 155 FTETTAYAPSSPYSASKASSDHLVRAWRRTY-GLPTIVTNCSNNYGPYH-----FP----EKLIPLVILNALEGK--PLP 222 (361)
T ss_dssp BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECEEESTTC-----CT----TSHHHHHHHHHHHTC--CEE
T ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-CCcEEEEeeceeECCCC-----Cc----ccHHHHHHHHHHcCC--Cce
Confidence 8898888899999999999999999998876 89999999999999842 11 1233 3566666665 355
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc--------c
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL--------V 291 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~--------~ 291 (347)
++| ++.+.++++|++|+|++++.+++. ...+++||+++++++|+.|+++.+++.+|.+.+. .
T Consensus 223 ~~~------~~~~~~~~i~v~Dva~a~~~~~~~----~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~ 292 (361)
T 1kew_A 223 IYG------KGDQIRDWLYVEDHARALHMVVTE----GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQIT 292 (361)
T ss_dssp EET------TSCCEEEEEEHHHHHHHHHHHHHH----CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEE
T ss_pred EcC------CCceeEeeEEHHHHHHHHHHHHhC----CCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCcccccccccee
Confidence 556 678899999999999999999987 2456899999999999999999999999865431 1
Q ss_pred cCCCCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 292 KSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 292 ~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
..+.++.......+|++|+++.|||+|+++++++|+++++||+++
T Consensus 293 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 293 YVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp EECCCTTCCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ecCCCCcccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 122222233456789999999999999999999999999999876
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=342.03 Aligned_cols=313 Identities=20% Similarity=0.187 Sum_probs=243.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-----HHHHHHHHHhhccCCC-CeEEEecCCCCHHHHHHHH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-----EIAVAKVKELAGYQGN-NMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~ 74 (347)
|+|+||||||+||||++|+++|+++|++|++++|+.... ........ .... ++.++.+|+.|.+++.+++
T Consensus 27 M~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~ 102 (381)
T 1n7h_A 27 PRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPH----NVNKALMKLHYADLTDASSLRRWI 102 (381)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC------------CCEEEEECCTTCHHHHHHHH
T ss_pred hCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccc----cccccceEEEECCCCCHHHHHHHH
Confidence 457999999999999999999999999999999876531 11000000 0012 6888999999999999999
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-----eEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-----NLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-----~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
+..++|+|||+||......+.+++...+++|+.++.+++++|++.+++ +||++||..+||.... +++|+.+..|
T Consensus 103 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~~~ 181 (381)
T 1n7h_A 103 DVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPFHP 181 (381)
T ss_dssp HHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCCCC
T ss_pred HhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCCCC
Confidence 854579999999976543334567788999999999999999987654 9999999999998766 8899999899
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.+.|+.+|.++|.+++.++.++ +++++++|++++|||.. ........+..++.++..+.... ..+| +
T Consensus 182 ~~~Y~~sK~~~E~~~~~~~~~~-~~~~~~~r~~~~~gp~~-----~~~~~~~~~~~~~~~~~~g~~~~-~~~g------~ 248 (381)
T 1n7h_A 182 RSPYAASKCAAHWYTVNYREAY-GLFACNGILFNHESPRR-----GENFVTRKITRALGRIKVGLQTK-LFLG------N 248 (381)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHHTSCCC-EEES------C
T ss_pred CCchHHHHHHHHHHHHHHHHHh-CCcEEEEEeCceeCCCC-----CCcchhHHHHHHHHHHHcCCCCe-EEeC------C
Confidence 9999999999999999998775 88999999999999842 11100011233455555665332 2344 6
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC--cccC--CCCCCCchhhcc
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP--LVKS--GRRPGDAEIVYA 305 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~--~~~~--~~~~~~~~~~~~ 305 (347)
+++.++|+|++|+|++++.+++.. .+++||+++++++|+.|+++.+.+.+|.+.+ +... ..++.......+
T Consensus 249 ~~~~~~~v~v~Dva~a~~~~~~~~-----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 323 (381)
T 1n7h_A 249 LQASRDWGFAGDYVEAMWLMLQQE-----KPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG 323 (381)
T ss_dssp TTCEEECEEHHHHHHHHHHHHTSS-----SCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCB
T ss_pred CCceeeeEEHHHHHHHHHHHHhCC-----CCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccC
Confidence 788999999999999999999762 1389999999999999999999999997642 1111 122333455678
Q ss_pred ChHHHHHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 306 STEKAERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 306 d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|++|+++.|||+|+++++++|+++++||.++
T Consensus 324 d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 354 (381)
T 1n7h_A 324 DASKAKEVLGWKPQVGFEKLVKMMVDEDLEL 354 (381)
T ss_dssp CCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999775
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=327.92 Aligned_cols=293 Identities=17% Similarity=0.192 Sum_probs=231.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|++++|+....... . ..+++++.+|+.|.+++.++++ ++|+
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l----~------~~~~~~~~~Dl~d~~~~~~~~~--~~d~ 80 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL----A------YLEPECRVAEMLDHAGLERALR--GLDG 80 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG----G------GGCCEEEECCTTCHHHHHHHTT--TCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh----c------cCCeEEEEecCCCHHHHHHHHc--CCCE
Confidence 46999999999999999999999999999999987654211 1 1267899999999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCC--CCCCCCCCCCC----CCchhh
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKV--VPCTEEFPLQA----MNPYGR 155 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~--~~~~e~~~~~~----~~~Y~~ 155 (347)
|||+||... ...+++...+++|+.++.+++++|++.++++||++||..+|+.... .+ +|+.+..| .+.|+.
T Consensus 81 vih~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~~~~p~~~~~~~Y~~ 157 (342)
T 2x4g_A 81 VIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGLFYDSLPSGKSSYVL 157 (342)
T ss_dssp EEEC--------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTCCCSSCCTTSCHHHH
T ss_pred EEECCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCCCCCccccccChHHH
Confidence 999999654 2345677899999999999999999999999999999999987554 44 88888888 899999
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 156 SKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
+|.++|.+++.+++. +++++++||+++|||... . .. +..++.++..+....+ | ++.++
T Consensus 158 sK~~~e~~~~~~~~~--g~~~~ilrp~~v~g~~~~----~----~~-~~~~~~~~~~~~~~~~---~--------~~~~~ 215 (342)
T 2x4g_A 158 CKWALDEQAREQARN--GLPVVIGIPGMVLGELDI----G----PT-TGRVITAIGNGEMTHY---V--------AGQRN 215 (342)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEEECEEECSCCS----S----CS-TTHHHHHHHTTCCCEE---E--------CCEEE
T ss_pred HHHHHHHHHHHHhhc--CCcEEEEeCCceECCCCc----c----cc-HHHHHHHHHcCCCccc---c--------CCCcc
Confidence 999999999998764 899999999999998420 1 01 3345666666653322 3 56789
Q ss_pred eeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC-------------------
Q 040584 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR------------------- 296 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------------- 296 (347)
++|++|+|+++..++++. .. +++||+++++ +|+.|+++.+.+.+|.+.++ ..+..
T Consensus 216 ~i~v~Dva~~~~~~~~~~---~~-g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~ 289 (342)
T 2x4g_A 216 VIDAAEAGRGLLMALERG---RI-GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQL 289 (342)
T ss_dssp EEEHHHHHHHHHHHHHHS---CT-TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC--------
T ss_pred eeeHHHHHHHHHHHHhCC---CC-CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999872 23 6899999999 99999999999999987654 22210
Q ss_pred ----CC----CchhhccChHHHHHhcCC-cccccHHHHHHHHHHHHhhCCC
Q 040584 297 ----PG----DAEIVYASTEKAERELNW-KAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 297 ----~~----~~~~~~~d~~k~~~~lg~-~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+. ......+|++|+++.||| +| ++++++++++++||+++++
T Consensus 290 ~~~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g~ 339 (342)
T 2x4g_A 290 PLLDETAIEVMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNGY 339 (342)
T ss_dssp --------CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcCC
Confidence 00 023566899999999999 99 7999999999999998865
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=331.59 Aligned_cols=302 Identities=24% Similarity=0.398 Sum_probs=241.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|||||||||||++|+++|+++|++|++++|........ +..+. ...++.++.+|+.+.. +. ++|+
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~~D~~~~~-----~~--~~d~ 94 (343)
T 2b69_A 27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN---VEHWI--GHENFELINHDVVEPL-----YI--EVDQ 94 (343)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---TGGGT--TCTTEEEEECCTTSCC-----CC--CCSE
T ss_pred CCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhh---hhhhc--cCCceEEEeCccCChh-----hc--CCCE
Confidence 47899999999999999999999999999999865432111 11111 1346889999998753 34 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCC-----CCCCCCCchhhh
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEE-----FPLQAMNPYGRS 156 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~-----~~~~~~~~Y~~s 156 (347)
|||+||.........++...+++|+.++.+++++|++.++ +||++||..+||.....+++|+ .+..+.+.|+.+
T Consensus 95 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~s 173 (343)
T 2b69_A 95 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEG 173 (343)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHH
T ss_pred EEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHH
Confidence 9999997543333456678899999999999999999886 9999999999998776777777 456677889999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
|.++|.+++.++++. +++++++||+++|||... ... ...+..++.++..+. .+.++| ++++.++|
T Consensus 174 K~~~E~~~~~~~~~~-~~~~~ilrp~~v~G~~~~-----~~~-~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~ 238 (343)
T 2b69_A 174 KRVAETMCYAYMKQE-GVEVRVARIFNTFGPRMH-----MND-GRVVSNFILQALQGE--PLTVYG------SGSQTRAF 238 (343)
T ss_dssp HHHHHHHHHHHHHHH-CCCEEEEEECCEECTTCC-----TTC-CCHHHHHHHHHHHTC--CEEEES------SSCCEEEC
T ss_pred HHHHHHHHHHHHHHh-CCcEEEEEEcceeCcCCC-----CCc-ccHHHHHHHHHHcCC--CceEcC------CCCeEEee
Confidence 999999999988775 899999999999998421 110 112334566666665 345556 67889999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNW 316 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~ 316 (347)
+|++|+|++++.+++. + .+++||+++++++|+.|+++.+++.+|.+.++...+..........+|++|+++.|||
T Consensus 239 v~v~Dva~a~~~~~~~---~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~ 313 (343)
T 2b69_A 239 QYVSDLVNGLVALMNS---N--VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGW 313 (343)
T ss_dssp EEHHHHHHHHHHHHTS---S--CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCC
T ss_pred EeHHHHHHHHHHHHhc---C--CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCC
Confidence 9999999999988875 1 2579999999999999999999999998876655554444455677899999999999
Q ss_pred cccccHHHHHHHHHHHHhhC
Q 040584 317 KAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~~~~~ 336 (347)
+|+++++++|+++++||+++
T Consensus 314 ~p~~~l~e~l~~~~~~~~~~ 333 (343)
T 2b69_A 314 EPVVPLEEGLNKAIHYFRKE 333 (343)
T ss_dssp CCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=327.25 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=230.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
++|+||||| +||||++|+++|+++|++|+++.|+.... ..+++++.+|+.|.+.+.++++. ++|
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------------~~~~~~~~~Dl~d~~~~~~~~~~-~~d 65 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM--------------PAGVQTLIADVTRPDTLASIVHL-RPE 65 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC--------------CTTCCEEECCTTCGGGCTTGGGG-CCS
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc--------------ccCCceEEccCCChHHHHHhhcC-CCC
Confidence 147999999 59999999999999999999999986642 34788999999999999999884 499
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+||... .++...+++|+.++.+++++|++.++++|||+||..+||.....+++|+.+..|.+.|+.+|.++
T Consensus 66 ~vih~a~~~~-----~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 140 (286)
T 3gpi_A 66 ILVYCVAASE-----YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEA 140 (286)
T ss_dssp EEEECHHHHH-----HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHHHHHHH
T ss_pred EEEEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhHHHHHH
Confidence 9999998642 35567889999999999999999889999999999999998888899999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|.+ +.+ ++++++||+++|||.. . .++.++.. + .. .+ ++++.++|+|++
T Consensus 141 E~~-~~~------~~~~ilR~~~v~G~~~-----------~---~~~~~~~~-~-~~---~~------~~~~~~~~i~v~ 188 (286)
T 3gpi_A 141 EAL-LAA------YSSTILRFSGIYGPGR-----------L---RMIRQAQT-P-EQ---WP------ARNAWTNRIHRD 188 (286)
T ss_dssp HHH-GGG------SSEEEEEECEEEBTTB-----------C---HHHHHTTC-G-GG---SC------SSBCEECEEEHH
T ss_pred HHH-Hhc------CCeEEEecccccCCCc-----------h---hHHHHHHh-c-cc---CC------CcCceeEEEEHH
Confidence 998 542 7899999999999841 1 23344333 1 11 12 678899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY 320 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~ 320 (347)
|+|+++..++++.. ....+++||+++++++|+.|+++.+++.+|.+.++...+ .......+|++|++ .|||+|++
T Consensus 189 Dva~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~d~~k~~-~lG~~p~~ 263 (286)
T 3gpi_A 189 DGAAFIAYLIQQRS-HAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---PVQGNKKLSNARLL-ASGYQLIY 263 (286)
T ss_dssp HHHHHHHHHHHHHT-TSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---CBCSSCEECCHHHH-HTTCCCSS
T ss_pred HHHHHHHHHHhhhc-cCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---ccCCCeEeeHHHHH-HcCCCCcC
Confidence 99999999998832 135579999999999999999999999999887655433 34567789999997 89999999
Q ss_pred -cHHHHHHHHHHHHhhCCC
Q 040584 321 -GIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 321 -~~~~~i~~~~~~~~~~~~ 338 (347)
+++++|+++++|+..+..
T Consensus 264 ~~l~e~l~~~~~~~~~~~~ 282 (286)
T 3gpi_A 264 PDYVSGYGALLAAMREGHH 282 (286)
T ss_dssp CSHHHHHHHHHHHHTC---
T ss_pred CcHHHHHHHHHHHHhcccc
Confidence 799999999999987643
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=326.58 Aligned_cols=294 Identities=17% Similarity=0.107 Sum_probs=206.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|||||||||||++|+++|+++|++|++++|+... ++ ++.+|++|.+++.+++++.++|
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----------------~~--~~~~Dl~d~~~~~~~~~~~~~d 62 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR----------------PK--FEQVNLLDSNAVHHIIHDFQPH 62 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------------------------CHHHHHHHCCS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC----------------CC--eEEecCCCHHHHHHHHHhhCCC
Confidence 88999999999999999999999999999999876432 02 5678999999999988754589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+||......+..++...+++|+.++.+++++|++.++ +||++||..+|+. ...+++|+.+..|.+.|+.+|.++
T Consensus 63 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~-~~~~~~E~~~~~~~~~Y~~sK~~~ 140 (315)
T 2ydy_A 63 VIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG-TNPPYREEDIPAPLNLYGKTKLDG 140 (315)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS-SSCSBCTTSCCCCCSHHHHHHHHH
T ss_pred EEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC-CCCCCCCCCCCCCcCHHHHHHHHH
Confidence 99999997654444567788999999999999999999887 9999999999987 567789999888999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH-cCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA-VGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++.+ +.+++++||+.||||.... . ...+..++..+. .+. .+.+ .+++.++++|+
T Consensus 141 e~~~~~~-----~~~~~~lR~~~v~G~~~~~-----~--~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~i~v 198 (315)
T 2ydy_A 141 EKAVLEN-----NLGAAVLRIPILYGEVEKL-----E--ESAVTVMFDKVQFSNK--SANM--------DHWQQRFPTHV 198 (315)
T ss_dssp HHHHHHH-----CTTCEEEEECSEECSCSSG-----G--GSTTGGGHHHHHCCSS--CEEE--------ECSSBBCCEEH
T ss_pred HHHHHHh-----CCCeEEEeeeeeeCCCCcc-----c--ccHHHHHHHHHHhcCC--Ceee--------ccCceECcEEH
Confidence 9999886 3467999999999984210 0 011222344444 443 2332 24577899999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-cccCCC----CCCCchhhccChHHHHHhc
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-LVKSGR----RPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-~~~~~~----~~~~~~~~~~d~~k~~~~l 314 (347)
+|+|++++.++++.......+++||+++++++|+.|+++.+.+.+|.+.+ +...+. .........+|++|+++.
T Consensus 199 ~Dva~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~- 277 (315)
T 2ydy_A 199 KDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL- 277 (315)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-
T ss_pred HHHHHHHHHHHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-
Confidence 99999999998863111245699999999999999999999999998754 222221 122334677899999988
Q ss_pred CCcccccHHHHHHHHHHHHhhCC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
||+|.++++++|+++++||++++
T Consensus 278 G~~p~~~~~~~l~~~~~~~~~~~ 300 (315)
T 2ydy_A 278 GIGQRTPFRIGIKESLWPFLIDK 300 (315)
T ss_dssp TCCCCCCHHHHHHHHHGGGCC--
T ss_pred CCCCCCCHHHHHHHHHHHHccch
Confidence 99999999999999999999884
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-44 Score=317.08 Aligned_cols=274 Identities=17% Similarity=0.153 Sum_probs=227.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||||||||||++|+++|+++|++|++++|+ .+|+.|.+++.+++++.++|+|
T Consensus 13 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-------------------------~~Dl~d~~~~~~~~~~~~~d~v 67 (292)
T 1vl0_A 13 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-------------------------DLDITNVLAVNKFFNEKKPNVV 67 (292)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-------------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred ceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-------------------------cCCCCCHHHHHHHHHhcCCCEE
Confidence 789999999999999999999999999999874 2699999999999974459999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+||........+++...+++|+.++.+++++|++.++ +||++||..+||.....+++|+.+..|.+.|+.+|.++|.
T Consensus 68 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~ 146 (292)
T 1vl0_A 68 INCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGEN 146 (292)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred EECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHHHHHHHHH
Confidence 999997543333456778999999999999999999888 9999999999998777789999998999999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
+++.+. .+++++||+.+|||. . .+.. ++..+..+. .+.+. +++.++++|++|
T Consensus 147 ~~~~~~-----~~~~~lR~~~v~G~~-~-----------~~~~~~~~~~~~~~--~~~~~--------~~~~~~~i~v~D 199 (292)
T 1vl0_A 147 FVKALN-----PKYYIVRTAWLYGDG-N-----------NFVKTMINLGKTHD--ELKVV--------HDQVGTPTSTVD 199 (292)
T ss_dssp HHHHHC-----SSEEEEEECSEESSS-S-----------CHHHHHHHHHHHCS--EEEEE--------SSCEECCEEHHH
T ss_pred HHHhhC-----CCeEEEeeeeeeCCC-c-----------ChHHHHHHHHhcCC--cEEee--------cCeeeCCccHHH
Confidence 998864 358999999999972 1 1333 445555543 33333 357889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC-----CCCCchhhccChHHHHHhcCC
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR-----RPGDAEIVYASTEKAERELNW 316 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~lg~ 316 (347)
+|++++.+++. + .+++||+++++++|+.|+++.+.+.+|.+.++...+. .........+|++|+++.|||
T Consensus 200 va~~~~~~~~~---~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 274 (292)
T 1vl0_A 200 LARVVLKVIDE---K--NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGD 274 (292)
T ss_dssp HHHHHHHHHHH---T--CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCC
T ss_pred HHHHHHHHHhc---C--CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCC
Confidence 99999999988 2 5699999999999999999999999998765433221 122344677999999999999
Q ss_pred cccccHHHHHHHHHHHHhh
Q 040584 317 KAKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~~~~ 335 (347)
+|+ +++++|+++++||++
T Consensus 275 ~p~-~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 275 ITR-EWKESLKEYIDLLQM 292 (292)
T ss_dssp CCC-BHHHHHHHHHHHHTC
T ss_pred CCC-CHHHHHHHHHHHhcC
Confidence 999 999999999999863
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=320.43 Aligned_cols=298 Identities=23% Similarity=0.302 Sum_probs=221.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---CC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---KF 79 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~~ 79 (347)
+||||||+||||++|+++|+++| ++|++++|....... ..+. ++. +.+|+.|.+.+.+++++. ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~--------~~~-~~~d~~~~~~~~~~~~~~~~~~~ 69 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNLV--------DLN-IADYMDKEDFLIQIMAGEEFGDV 69 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HHHH--------TSC-CSEEEEHHHHHHHHHTTCCCSSC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchh--hhcC--------cce-eccccccHHHHHHHHhccccCCC
Confidence 58999999999999999999999 999999987664311 1111 222 678999999999988731 49
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||+||.... ...++...+++|+.++.+++++|++.++ +||++||..+||.....+++|+.+..|.++|+.+|.+
T Consensus 70 d~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~ 146 (310)
T 1eq2_A 70 EAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFL 146 (310)
T ss_dssp CEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHH
T ss_pred cEEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHHH
Confidence 999999997543 3456778899999999999999999999 9999999999998777788999988999999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCce-eeeee
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTV-VRDYI 237 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~i 237 (347)
+|.+++.++.+. +++++++||+++|||...+ ......+. .++.++..+.. +.++| ++++ .++|+
T Consensus 147 ~e~~~~~~~~~~-g~~~~~lrp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~------~g~~~~~~~i 212 (310)
T 1eq2_A 147 FDEYVRQILPEA-NSQIVGFRYFNVYGPREGH-----KGSMASVAFHLNTQLNNGES--PKLFE------GSENFKRDFV 212 (310)
T ss_dssp HHHHHHHHGGGC-SSCEEEEEECEEESSSCGG-----GGGGSCHHHHHHHHHHC---------------------CBCEE
T ss_pred HHHHHHHHHHHc-CCCEEEEeCCcEECcCCCC-----CCccchHHHHHHHHHHcCCC--cEEec------CCCcceEccE
Confidence 999999998775 8999999999999984211 00011233 35666666553 33344 5778 89999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC----CCchhhccChHHHHHh
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP----GDAEIVYASTEKAERE 313 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~ 313 (347)
|++|+|++++.++++ +. +++||+++++++|+.|+++.+.+.+|.+ .+...+... .......+|++|+++
T Consensus 213 ~v~Dva~~~~~~~~~---~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 285 (310)
T 1eq2_A 213 YVGDVADVNLWFLEN---GV--SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA- 285 (310)
T ss_dssp EHHHHHHHHHHHHHH---CC--CEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-
T ss_pred EHHHHHHHHHHHHhc---CC--CCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-
Confidence 999999999999987 22 6999999999999999999999999976 222222111 112345689999976
Q ss_pred cCC-cccccHHHHHHHHHHHHhhC
Q 040584 314 LNW-KAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 314 lg~-~p~~~~~~~i~~~~~~~~~~ 336 (347)
||| .|.++++++|+++++||+++
T Consensus 286 lG~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 286 AGYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp TTCCCCCCCHHHHHHHHHHHTC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhc
Confidence 899 78889999999999999754
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=323.19 Aligned_cols=299 Identities=23% Similarity=0.301 Sum_probs=237.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---K 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---~ 78 (347)
|+||||||+||||++|+++|+++| ++|++++|+...... ..+ .++. +.+|+.|.+.+.++++.. +
T Consensus 47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-----~~~-----~~~~-~~~d~~~~~~~~~~~~~~~~~~ 115 (357)
T 2x6t_A 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-----VNL-----VDLN-IADYMDKEDFLIQIMAGEEFGD 115 (357)
T ss_dssp -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGG-----GGT-----TTSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchh-----hcc-----cCce-EeeecCcHHHHHHHHhhcccCC
Confidence 789999999999999999999999 999999987654210 111 1233 678999999999988731 4
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHH
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
+|+|||+||.... ...++...+++|+.++.+++++|++.++ +||++||..+||.....+++|+.+..|.+.|+.+|.
T Consensus 116 ~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~ 192 (357)
T 2x6t_A 116 VEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKF 192 (357)
T ss_dssp CCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHHHHH
T ss_pred CCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHHHHH
Confidence 9999999997543 3456678899999999999999999888 999999999999877778999999899999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCce-eeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTV-VRDY 236 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~ 236 (347)
++|.+++.++.+. +++++++||++||||.... ......+. .++..+..+.. +.++| ++++ .++|
T Consensus 193 ~~E~~~~~~~~~~-g~~~~ilRp~~v~Gp~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~ 258 (357)
T 2x6t_A 193 LFDEYVRQILPEA-NSQIVGFRYFNVYGPREGH-----KGSMASVAFHLNTQLNNGES--PKLFE------GSENFKRDF 258 (357)
T ss_dssp HHHHHHHHHGGGC-SSCEEEEEECEEESSSCTT-----CGGGSCHHHHHHHHHHTTCC--CEEET------TGGGCEECE
T ss_pred HHHHHHHHHHHHc-CCCEEEEecCeEECCCCCC-----CcccchHHHHHHHHHHcCCC--cEEeC------CCCcceEcc
Confidence 9999999998775 8999999999999984211 11111233 35666666653 34455 6778 8999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC----CCchhhccChHHHHH
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP----GDAEIVYASTEKAER 312 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~ 312 (347)
+|++|+|++++.+++. +. +++||+++++++|+.|+++.+.+.+|.+ .+...+... .......+|++|+++
T Consensus 259 i~v~Dva~ai~~~~~~---~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 332 (357)
T 2x6t_A 259 VYVGDVADVNLWFLEN---GV--SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA 332 (357)
T ss_dssp EEHHHHHHHHHHHHHH---CC--CEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHHHH
T ss_pred EEHHHHHHHHHHHHhc---CC--CCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHHHH
Confidence 9999999999999987 22 6999999999999999999999999987 322222111 112346689999976
Q ss_pred hcCC-cccccHHHHHHHHHHHHhhC
Q 040584 313 ELNW-KAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 313 ~lg~-~p~~~~~~~i~~~~~~~~~~ 336 (347)
||| .|..+++++|+++++||+++
T Consensus 333 -lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 333 -AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp -TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred -cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 899 78889999999999999753
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=320.82 Aligned_cols=284 Identities=18% Similarity=0.112 Sum_probs=230.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+||||||+||||++|+++|+ +||+|++++|+.. .+.+|+.|.+++.+++++.++|+|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~---------------------~~~~D~~d~~~~~~~~~~~~~d~v 58 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK---------------------EFCGDFSNPKGVAETVRKLRPDVI 58 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS---------------------SSCCCTTCHHHHHHHHHHHCCSEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc---------------------cccccCCCHHHHHHHHHhcCCCEE
Confidence 589999999999999999999 8999999988641 246899999999999984459999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+||.........++...+++|+.++.+++++|++.++ ||||+||..+||.....+++|+.+..|.+.|+.+|.++|.
T Consensus 59 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 137 (299)
T 1n2s_A 59 VNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEK 137 (299)
T ss_dssp EECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHH
T ss_pred EECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHHHHH
Confidence 999997654334567788999999999999999998887 8999999999998777789999999999999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
+++.+. .+++++||+++|||.. ..+.+ ++..+..+. .+.++| ++.++++|++|
T Consensus 138 ~~~~~~-----~~~~ilRp~~v~G~~~-----------~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~i~v~D 191 (299)
T 1n2s_A 138 ALQDNC-----PKHLIFRTSWVYAGKG-----------NNFAKTMLRLAKERQ--TLSVIN--------DQYGAPTGAEL 191 (299)
T ss_dssp HHHHHC-----SSEEEEEECSEECSSS-----------CCHHHHHHHHHHHCS--EEEEEC--------SCEECCEEHHH
T ss_pred HHHHhC-----CCeEEEeeeeecCCCc-----------CcHHHHHHHHHhcCC--CEEeec--------CcccCCeeHHH
Confidence 998864 2789999999999841 12333 555555554 344433 47899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CCeeEEccCCCcccHHHHHHHHHHHhCCCC------CcccCCC-----CCCCchhhccChHH
Q 040584 242 LADGHIAALRKLDDPKV-GCEVYNLGTGKGTSVLEMVAAFEKASGKKI------PLVKSGR-----RPGDAEIVYASTEK 309 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~-~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~------~~~~~~~-----~~~~~~~~~~d~~k 309 (347)
+|+++..++++... .. .+++||+++++++|+.|+++.+.+.+|.+. .+...+. .........+|++|
T Consensus 192 va~~~~~~~~~~~~-~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 270 (299)
T 1n2s_A 192 LADCTAHAIRVALN-KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEK 270 (299)
T ss_dssp HHHHHHHHHHHHHH-CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHH
T ss_pred HHHHHHHHHHHhcc-ccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHH
Confidence 99999999987210 12 368999999999999999999999998652 2222211 11224567789999
Q ss_pred HHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 310 AERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 310 ~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
+++.|||+|+ +++++|+++++||+++.
T Consensus 271 ~~~~lG~~p~-~~~~~l~~~~~~~~~~~ 297 (299)
T 1n2s_A 271 FQRNFDLILP-QWELGVKRMLTEMFTTT 297 (299)
T ss_dssp HHHHHTCCCC-BHHHHHHHHHHHHHSCC
T ss_pred HHHhcCCCCC-CHHHHHHHHHHHHHhcC
Confidence 9999999999 89999999999998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=320.87 Aligned_cols=292 Identities=22% Similarity=0.297 Sum_probs=231.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++|++|++++|+........+ . -.++.++.+|++|.+++.++++..++|+
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~-----l~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 91 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP---P-----VAGLSVIEGSVTDAGLLERAFDSFKPTH 91 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSC---S-----CTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhh---c-----cCCceEEEeeCCCHHHHHHHHhhcCCCE
Confidence 4799999999999999999999999999999986543221000 0 1368899999999999999997445999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCC--CCCCCCCCCCCCchhhhHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVV--PCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~--~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|||+||..... +.+++. +++|+.++.+++++|++.++++||++||..+||..... +++|+. .+.+.|+.+|.+
T Consensus 92 vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~--~~~~~Y~~sK~~ 166 (330)
T 2pzm_A 92 VVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT--APFTSYGISKTA 166 (330)
T ss_dssp EEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC--CCCSHHHHHHHH
T ss_pred EEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC--CCCChHHHHHHH
Confidence 99999976432 222333 89999999999999999888999999999999875544 777776 677899999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
+|.+++.+ +++++++||+++|||+ . . ...+..++.++..+. . .++ ++. .++++|+
T Consensus 167 ~e~~~~~~-----~~~~~~iR~~~v~gp~-----~-~---~~~~~~~~~~~~~~~-~---~~~------~~~-~~~~i~~ 221 (330)
T 2pzm_A 167 GEAFLMMS-----DVPVVSLRLANVTGPR-----L-A---IGPIPTFYKRLKAGQ-K---CFC------SDT-VRDFLDM 221 (330)
T ss_dssp HHHHHHTC-----SSCEEEEEECEEECTT-----C-C---SSHHHHHHHHHHTTC-C---CCE------ESC-EECEEEH
T ss_pred HHHHHHHc-----CCCEEEEeeeeeECcC-----C-C---CCHHHHHHHHHHcCC-E---EeC------CCC-EecceeH
Confidence 99998764 7789999999999984 1 1 112233555555554 2 222 455 8899999
Q ss_pred HHHHH-HHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHH-----HHh
Q 040584 240 VDLAD-GHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKA-----ERE 313 (347)
Q Consensus 240 ~D~a~-a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~-----~~~ 313 (347)
+|+|+ +++.+++. +. +++||+++++++|+.|+++.+++.+|.+ ++...+..+ ......+|++|+ ++
T Consensus 222 ~Dva~~a~~~~~~~---~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~d~~k~~~~~l~~- 293 (330)
T 2pzm_A 222 SDFLAIADLSLQEG---RP--TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA-PGADDVPSVVLDPSKTETE- 293 (330)
T ss_dssp HHHHHHHHHHTSTT---CC--CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC-CCTTSCSEECBCCHHHHHH-
T ss_pred HHHHHHHHHHHhhc---CC--CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc-chhhccCCHHHHhhchHHH-
Confidence 99999 99988876 22 7999999999999999999999999987 444433332 345667888888 77
Q ss_pred cCCcccccHHHHHHHHHHHHhhCCCC
Q 040584 314 LNWKAKYGIDEMCRDQWNWASKNPYG 339 (347)
Q Consensus 314 lg~~p~~~~~~~i~~~~~~~~~~~~~ 339 (347)
|||+|+++++++|+++++||+++++.
T Consensus 294 lG~~p~~~~~~~l~~~~~~~~~~~~~ 319 (330)
T 2pzm_A 294 FGWKAKVDFKDTITGQLAWYDKYGVT 319 (330)
T ss_dssp HCCCCCCCHHHHHHHHHHHHHHHCSC
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999987543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=316.01 Aligned_cols=304 Identities=15% Similarity=0.174 Sum_probs=235.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+||||||+||||++|+++|+++ |++|++++|+..... ++.++.+|+.|.+++.++++..++|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---------------~~~~~~~D~~d~~~~~~~~~~~~~d~ 65 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG---------------GIKFITLDVSNRDEIDRAVEKYSIDA 65 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT---------------TCCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------------CceEEEecCCCHHHHHHHHhhcCCcE
Confidence 5899999999999999999998 899999988754321 45688999999999999997556999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC-CCCCCCCCCCCCCCCchhhhHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP-KVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~-~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
|||+|+.... ....++...+++|+.++.+++++|++.++++||++||..+||.. ...+.+|+.+..|.+.|+.+|.++
T Consensus 66 vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~ 144 (317)
T 3ajr_A 66 IFHLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAA 144 (317)
T ss_dssp EEECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHH
T ss_pred EEECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHH
Confidence 9999996532 22346678899999999999999999999999999999999864 345677888888999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|.+++.++++. +++++++||+++||+..... . .....+...+.+...+. .+..++ ++++.++|+|++
T Consensus 145 e~~~~~~~~~~-~~~~~~lR~~~~~g~~~~~~-~---~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~i~v~ 211 (317)
T 3ajr_A 145 ELLGQYYYEKF-GLDVRSLRYPGIISYKAEPT-A---GTTDYAVEIFYYAVKRE--KYKCYL------APNRALPMMYMP 211 (317)
T ss_dssp HHHHHHHHHHH-CCEEEEEEECEEECSSSCCC-S---CSSTHHHHHHHHHHTTC--CEEECS------CTTCCEEEEEHH
T ss_pred HHHHHHHHHhc-CCeEEEEecCcEeccCCCCC-C---cchhHHHHHHHHHHhCC--Cceeec------CccceeeeeEHH
Confidence 99999887775 89999999999999742111 0 11122344444444333 234444 567889999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCC---CchhhccChHHHHHhcCCc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPG---DAEIVYASTEKAERELNWK 317 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~d~~k~~~~lg~~ 317 (347)
|+|++++.++++.......+++||+++ +.+|+.|+++.+.+.+|. ..+...+.... ......+|++|+++.|||+
T Consensus 212 Dva~a~~~~l~~~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 289 (317)
T 3ajr_A 212 DALKALVDLYEADRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESLDSSEASNEWGFS 289 (317)
T ss_dssp HHHHHHHHHHHCCGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCccccccCceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhccccccccCHHHHHHHcCCC
Confidence 999999999986221111358999985 579999999999999883 22222221000 0112357999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCC
Q 040584 318 AKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 318 p~~~~~~~i~~~~~~~~~~~~ 338 (347)
|+++++++|+++++|++++..
T Consensus 290 p~~~~~~~l~~~~~~~~~~~~ 310 (317)
T 3ajr_A 290 IEYDLDRTIDDMIDHISEKLG 310 (317)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999987644
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=314.44 Aligned_cols=288 Identities=20% Similarity=0.232 Sum_probs=227.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||+||||||+||||++|+++|+++|++|++++|+....... +.. -.++.++.+|++|.+++.+++++.++|+
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---l~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~~D~ 92 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREH---LKD-----HPNLTFVEGSIADHALVNQLIGDLQPDA 92 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG---SCC-----CTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhh---Hhh-----cCCceEEEEeCCCHHHHHHHHhccCCcE
Confidence 58999999999999999999999999999999875432110 000 1368899999999999999998434999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC----CCCCCCCCCCCCCCCC-Cchhhh
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG----WPKVVPCTEEFPLQAM-NPYGRS 156 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg----~~~~~~~~e~~~~~~~-~~Y~~s 156 (347)
|||+||..... ...++. +++|+.++.+++++|++.++++||++||..+|| .... +++|+. .|. +.|+.+
T Consensus 93 vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~--~p~~~~Y~~s 166 (333)
T 2q1w_A 93 VVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR--NPANSSYAIS 166 (333)
T ss_dssp EEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC--CCTTCHHHHH
T ss_pred EEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC--CCCCCchHHH
Confidence 99999976532 222333 899999999999999998889999999999998 5444 777776 666 899999
Q ss_pred HHHHHHHHHH-HhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceee
Q 040584 157 KLFIEEICRD-VHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVR 234 (347)
Q Consensus 157 K~~~e~~~~~-~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 234 (347)
|.++|.+++. ++ +++++||+++|||. . . ..+.+ ++..+..+. . +. + +++.+
T Consensus 167 K~~~E~~~~~s~~------~~~ilR~~~v~gp~-----~-~----~~~~~~~~~~~~~~~-~-~~--~-------~~~~~ 219 (333)
T 2q1w_A 167 KSANEDYLEYSGL------DFVTFRLANVVGPR-----N-V----SGPLPIFFQRLSEGK-K-CF--V-------TKARR 219 (333)
T ss_dssp HHHHHHHHHHHTC------CEEEEEESEEESTT-----C-C----SSHHHHHHHHHHTTC-C-CE--E-------EECEE
T ss_pred HHHHHHHHHhhhC------CeEEEeeceEECcC-----C-c----CcHHHHHHHHHHcCC-e-ee--C-------CCceE
Confidence 9999999987 53 68999999999983 1 0 12333 555665554 2 21 1 35678
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC----CCchhhccChHHH
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP----GDAEIVYASTEKA 310 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~ 310 (347)
+++|++|+|++++.+++. +. +++||+++++.+|+.|+++.+.+.+|.+ ++...+..+ .......+|++|+
T Consensus 220 ~~i~v~Dva~ai~~~~~~---~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~ 293 (333)
T 2q1w_A 220 DFVFVKDLARATVRAVDG---VG--HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTI 293 (333)
T ss_dssp CEEEHHHHHHHHHHHHTT---CC--CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHH
T ss_pred eeEEHHHHHHHHHHHHhc---CC--CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHH
Confidence 999999999999999986 22 7999999999999999999999999987 433322111 1124677899999
Q ss_pred HHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 311 ERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 311 ~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
++. ||+|.++++++|+++++||++++
T Consensus 294 ~~~-G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 294 QDF-GKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp HHH-CCCCCCCHHHHHHHHHHHHHHHC
T ss_pred Hhc-CCCcCCCHHHHHHHHHHHHHHHC
Confidence 998 99999999999999999998764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=309.75 Aligned_cols=269 Identities=16% Similarity=0.158 Sum_probs=215.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||+|||||| ||||++|+++|+++||+|+++.|++....... ..+++++.+|+.|.+ +. ++|
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~~D~~d~~-----~~--~~d 65 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----------ASGAEPLLWPGEEPS-----LD--GVT 65 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----------HTTEEEEESSSSCCC-----CT--TCC
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----------hCCCeEEEecccccc-----cC--CCC
Confidence 7899999998 99999999999999999999999876543322 137899999999844 44 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHH--cCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA--HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~--~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
+|||+|+..... ...+.++++++++ .++++|||+||..+||.....+++|+.+..|.+.|+.+|.
T Consensus 66 ~vi~~a~~~~~~-------------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~ 132 (286)
T 3ius_A 66 HLLISTAPDSGG-------------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRV 132 (286)
T ss_dssp EEEECCCCBTTB-------------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHH
T ss_pred EEEECCCccccc-------------cHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHH
Confidence 999999865321 1235688999988 6789999999999999888888999999999999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
++|++++.+ .+++++++||+++|||.... +.++..+.. ..+. .+.+.++|+|
T Consensus 133 ~~E~~~~~~----~~~~~~ilRp~~v~G~~~~~---------------~~~~~~~~~--~~~~-------~~~~~~~~i~ 184 (286)
T 3ius_A 133 MAEQQWQAV----PNLPLHVFRLAGIYGPGRGP---------------FSKLGKGGI--RRII-------KPGQVFSRIH 184 (286)
T ss_dssp HHHHHHHHS----TTCCEEEEEECEEEBTTBSS---------------STTSSSSCC--CEEE-------CTTCCBCEEE
T ss_pred HHHHHHHhh----cCCCEEEEeccceECCCchH---------------HHHHhcCCc--cccC-------CCCcccceEE
Confidence 999999886 38999999999999984221 112233432 2332 3467899999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccC--CCCCCC------chhhccChHHH
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS--GRRPGD------AEIVYASTEKA 310 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~--~~~~~~------~~~~~~d~~k~ 310 (347)
++|+|+++..++++ + ..+++||+++++++|+.|+++.+.+.+|.+.+.... ...... .....+|++|+
T Consensus 185 v~Dva~a~~~~~~~---~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 260 (286)
T 3ius_A 185 VEDIAQVLAASMAR---P-DPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRI 260 (286)
T ss_dssp HHHHHHHHHHHHHS---C-CTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHH
T ss_pred HHHHHHHHHHHHhC---C-CCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHH
Confidence 99999999999987 2 256899999999999999999999999987653221 111111 14566899999
Q ss_pred HHhcCCcccc-cHHHHHHHHHHH
Q 040584 311 ERELNWKAKY-GIDEMCRDQWNW 332 (347)
Q Consensus 311 ~~~lg~~p~~-~~~~~i~~~~~~ 332 (347)
++.|||+|++ +++++|+++++.
T Consensus 261 ~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 261 KEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp HHTTCCCCSCSSHHHHHHHHHHT
T ss_pred HHHhCCCCCcCCHHHHHHHHHHh
Confidence 9999999999 799999999874
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=344.39 Aligned_cols=319 Identities=17% Similarity=0.244 Sum_probs=245.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHH-HHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAA-LEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~~~ 79 (347)
+|+|||||||||||++|+++|+++ |++|++++|+........ ...++.++.+|++|.++ +.++++ ++
T Consensus 315 ~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~---------~~~~v~~v~~Dl~d~~~~~~~~~~--~~ 383 (660)
T 1z7e_A 315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL---------NHPHFHFVEGDISIHSEWIEYHVK--KC 383 (660)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT---------TCTTEEEEECCTTTCHHHHHHHHH--HC
T ss_pred CceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc---------cCCceEEEECCCCCcHHHHHHhhc--CC
Confidence 478999999999999999999998 899999999865432110 13478899999998765 777887 59
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC-------CCCCc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-------QAMNP 152 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~-------~~~~~ 152 (347)
|+|||+||.........++...+++|+.++.+++++|++.+ ++||++||..+||.....+++|+++. .|.+.
T Consensus 384 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~ 462 (660)
T 1z7e_A 384 DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWI 462 (660)
T ss_dssp SEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHH
T ss_pred CEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCC
Confidence 99999999765433445677889999999999999999988 89999999999998777778887652 45668
Q ss_pred hhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 153 YGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
|+.+|.++|.+++.++++. +++++++||+++|||..........+....+..++.++..+. .+.++| ++++
T Consensus 463 Y~~sK~~~E~~~~~~~~~~-gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g------~g~~ 533 (660)
T 1z7e_A 463 YSVSKQLLDRVIWAYGEKE-GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGS--PIKLID------GGKQ 533 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTC--CEEEEG------GGCC
T ss_pred cHHHHHHHHHHHHHHHHHc-CCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCC--CcEEeC------CCCe
Confidence 9999999999999988775 899999999999998532100000000112334666666665 345555 5788
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC-cccHHHHHHHHHHHhCCCCCcccCCCC---------------
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK-GTSVLEMVAAFEKASGKKIPLVKSGRR--------------- 296 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~--------------- 296 (347)
.++|+|++|+|++++.++++.. ....+++||+++++ ++|+.|+++.+.+.+|.+......+..
T Consensus 534 ~~~~i~v~Dva~ai~~~l~~~~-~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~ 612 (660)
T 1z7e_A 534 KRCFTDIRDGIEALYRIIENAG-NRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKG 612 (660)
T ss_dssp EEECEEHHHHHHHHHHHHHCGG-GTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTT
T ss_pred EEEEEEHHHHHHHHHHHHhCcc-ccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhcccccccc
Confidence 9999999999999999998621 11356899999886 899999999999999865432221211
Q ss_pred CCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCCCCC
Q 040584 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 342 (347)
Q Consensus 297 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~~~~ 342 (347)
........+|++|+++.|||+|+++++++|+++++||+++..-.+.
T Consensus 613 ~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~~~~~ 658 (660)
T 1z7e_A 613 YQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDK 658 (660)
T ss_dssp CCCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSCCC--
T ss_pred ccchhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhcccccC
Confidence 0123456789999999999999999999999999999988543333
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=313.38 Aligned_cols=306 Identities=17% Similarity=0.164 Sum_probs=235.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-------CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-------YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
+|+||||||+||||++|+++|+++| ++|++++|....... ....++.++.+|++|.+++.+++
T Consensus 14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~----------~~~~~~~~~~~Dl~d~~~~~~~~ 83 (342)
T 2hrz_A 14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA----------GFSGAVDARAADLSAPGEAEKLV 83 (342)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT----------TCCSEEEEEECCTTSTTHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc----------ccCCceeEEEcCCCCHHHHHHHH
Confidence 4789999999999999999999999 899999987653211 01346788999999999999998
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-----CCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-----CKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-----~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
+. ++|+|||+||.... ...+++...+++|+.++.+++++|++.+ +++||++||..+||.....+++|+++..+
T Consensus 84 ~~-~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~ 161 (342)
T 2hrz_A 84 EA-RPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTP 161 (342)
T ss_dssp HT-CCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCCC
T ss_pred hc-CCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCCC
Confidence 53 69999999997542 2345677889999999999999999876 78999999999998766678899999889
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccC-CCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVG-AHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
.++|+.+|.++|.++++++.+. +++.+++|++.+|| |+ .........+..++.....+.. ..+++
T Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~ir~~~v~g~pg-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~------ 227 (342)
T 2hrz_A 162 LTSYGTQKAICELLLSDYSRRG-FFDGIGIRLPTICIRPG-----KPNAAASGFFSNILREPLVGQE--AVLPV------ 227 (342)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTT-SCEEEEEEECEETTCCS-----SCCCSGGGHHHHHHHHHHTTCC--EEECS------
T ss_pred cchHHHHHHHHHHHHHHHHHhc-CCCceeEEeeeEEecCC-----CCcchhHHHHHHHHHHHhcCCC--eeccC------
Confidence 9999999999999999988764 78999999999999 52 1111111122335566666653 23333
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC--cccCCCCCC-C---chh
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP--LVKSGRRPG-D---AEI 302 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~~~~~-~---~~~ 302 (347)
.+...++++|++|+|++++.+++........+++||++ ++.+|+.|+++.+.+.+|.+.+ +...+.... . ...
T Consensus 228 ~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (342)
T 2hrz_A 228 PESIRHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWA 306 (342)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSC
T ss_pred CCccceeeEehHHHHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccc
Confidence 34667889999999999999998621000145899995 5789999999999999996542 222221100 0 011
Q ss_pred hccChHHHHHhcCCcccccHHHHHHHHHHHHhh
Q 040584 303 VYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 303 ~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~ 335 (347)
..+|++|+++ |||+|+++++++|+++++|++.
T Consensus 307 ~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~~ 338 (342)
T 2hrz_A 307 PGFEAKRARE-LGFTAESSFEEIIQVHIEDELG 338 (342)
T ss_dssp CCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHST
T ss_pred cccChHHHHH-cCCCCCCCHHHHHHHHHHHhcC
Confidence 2479999998 9999999999999999999973
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-42 Score=311.12 Aligned_cols=312 Identities=20% Similarity=0.228 Sum_probs=214.0
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+||||||+||||++|+++|+++||+|+++.|+....... ..+..+. ...+++++.+|++|.+++.++++ ++|
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~-~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~--~~D 82 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKV-SHLLELQ--ELGDLKIFRADLTDELSFEAPIA--GCD 82 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTT-HHHHHHG--GGSCEEEEECCTTTSSSSHHHHT--TCS
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhH-HHHHhcC--CCCcEEEEecCCCChHHHHHHHc--CCC
Confidence 568999999999999999999999999999988875532110 1111111 12468889999999999999998 699
Q ss_pred EEEEccccccCCccccCc-chhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccc-cCCC---CCCCCCCCCCC-------
Q 040584 81 AVIHFAGLKAVGESVQKP-LPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATA-YGWP---KVVPCTEEFPL------- 147 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~-yg~~---~~~~~~e~~~~------- 147 (347)
+|||+|+.... ...++ ...+++|+.++.+++++|++.+ ++|||++||..+ |+.. ...+++|+.+.
T Consensus 83 ~Vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (338)
T 2rh8_A 83 FVFHVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTS 160 (338)
T ss_dssp EEEEESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-----
T ss_pred EEEEeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccc
Confidence 99999986532 22233 3488999999999999999985 899999999874 4321 11367776532
Q ss_pred -CC-CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 -QA-MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 -~~-~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+ .++|+.||.++|.+++.+++++ +++++++||+++|||... .. .. .....+.....|....+.... ..
T Consensus 161 ~~~~~~~Y~~sK~~~E~~~~~~~~~~-gi~~~~lrp~~v~Gp~~~-----~~-~~-~~~~~~~~~~~g~~~~~~~~~-~~ 231 (338)
T 2rh8_A 161 AKPPTWGYPASKTLAEKAAWKFAEEN-NIDLITVIPTLMAGSSLT-----SD-VP-SSIGLAMSLITGNEFLINGMK-GM 231 (338)
T ss_dssp --CCCCCCTTSCCHHHHHHHHHHHHH-TCCEEEEEECEEESCCSS-----SS-CC-HHHHHHHHHHHTCHHHHHHHH-HH
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHc-CCcEEEEeCCceECCCCC-----CC-CC-chHHHHHHHHcCCcccccccc-cc
Confidence 11 2369999999999999987664 899999999999998421 11 11 112222222333211110000 00
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC-CCCcccCCCCCCCchhhc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVKSGRRPGDAEIVY 304 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~ 304 (347)
..+...++|+|++|+|++++.++++ + ..++.||+++ ..+|+.|+++.+.+.++. +.+....+. +.. ....
T Consensus 232 --~~~~~~~~~i~v~Dva~a~~~~~~~---~-~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~ 302 (338)
T 2rh8_A 232 --QMLSGSVSIAHVEDVCRAHIFVAEK---E-SASGRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGDF-PPK-SKLI 302 (338)
T ss_dssp --HHHHSSEEEEEHHHHHHHHHHHHHC---T-TCCEEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTTS-CSS-CSCC
T ss_pred --ccccCcccEEEHHHHHHHHHHHHcC---C-CcCCcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCCC-CcC-ccee
Confidence 0001234899999999999999876 2 2246788865 469999999999998762 332222111 111 1267
Q ss_pred cChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 305 ASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 305 ~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+|++|+ +.|||+|+++++++|+++++||+++.+
T Consensus 303 ~d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~~~ 335 (338)
T 2rh8_A 303 ISSEKL-VKEGFSFKYGIEEIYDESVEYFKAKGL 335 (338)
T ss_dssp CCCHHH-HHHTCCCSCCHHHHHHHHHHHHHHTTC
T ss_pred echHHH-HHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 899999 669999999999999999999998753
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=308.35 Aligned_cols=305 Identities=18% Similarity=0.160 Sum_probs=227.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEE-ecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH-KLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+||||||+||||++|+++|+++|++|++++|+........+.+... ...++.++ .+|++|.+++.++++ ++|
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~--~~d 85 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK---YPGRFETAVVEDMLKQGAYDEVIK--GAA 85 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---STTTEEEEECSCTTSTTTTTTTTT--TCS
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhcc---CCCceEEEEecCCcChHHHHHHHc--CCC
Confidence 479999999999999999999999999999998765443333322221 12468888 899999999998887 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHH-cCCCeEEEeccccccCCCCC----CCCCCCC----------
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA-HGCKNLVFSSSATAYGWPKV----VPCTEEF---------- 145 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~-~~~~~iv~~SS~~~yg~~~~----~~~~e~~---------- 145 (347)
+|||+||..... .++...+++|+.++.+++++|++ .++++||++||..+|+.... .+++|++
T Consensus 86 ~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 162 (342)
T 1y1p_A 86 GVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAK 162 (342)
T ss_dssp EEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHH
T ss_pred EEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhc
Confidence 999999976432 45677899999999999999985 56889999999999864321 4667765
Q ss_pred ------CCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCce
Q 040584 146 ------PLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPAL 218 (347)
Q Consensus 146 ------~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (347)
+..+.+.|+.+|.++|.+++.+++++ .+++++++||+++|||..... .....+..++.++..++...
T Consensus 163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~- 236 (342)
T 1y1p_A 163 TLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPE-----TQSGSTSGWMMSLFNGEVSP- 236 (342)
T ss_dssp HSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTT-----TCCCHHHHHHHHHHTTCCCH-
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCC-----CCCccHHHHHHHHHcCCCcc-
Confidence 23456789999999999999988764 378899999999999843211 00012444677777765432
Q ss_pred EEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCC
Q 040584 219 TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPG 298 (347)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~ 298 (347)
+++ ++ +.++|+|++|+|++++.+++. +...++.+. ++++.+|+.|+++.+.+.+|.. .+.. +....
T Consensus 237 -~~~------~~-~~~~~v~v~Dva~a~~~~~~~---~~~~g~~~~-~~g~~~s~~e~~~~i~~~~~~~-~~~~-~~~~~ 302 (342)
T 1y1p_A 237 -ALA------LM-PPQYYVSAVDIGLLHLGCLVL---PQIERRRVY-GTAGTFDWNTVLATFRKLYPSK-TFPA-DFPDQ 302 (342)
T ss_dssp -HHH------TC-CSEEEEEHHHHHHHHHHHHHC---TTCCSCEEE-ECCEEECHHHHHHHHHHHCTTS-CCCC-CCCCC
T ss_pred -ccc------cC-CcCCEeEHHHHHHHHHHHHcC---cccCCceEE-EeCCCCCHHHHHHHHHHHCCCc-cCCC-CCCcc
Confidence 223 23 678999999999999999986 223344443 4567899999999999999964 2111 11111
Q ss_pred CchhhccChHHHHHhcCC---cccccHHHHHHHHHHHHh
Q 040584 299 DAEIVYASTEKAERELNW---KAKYGIDEMCRDQWNWAS 334 (347)
Q Consensus 299 ~~~~~~~d~~k~~~~lg~---~p~~~~~~~i~~~~~~~~ 334 (347)
......+|++|+++.||| .+..+++++|+++++||+
T Consensus 303 ~~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 303 GQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp CCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred ccccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 123467899999998887 455699999999999875
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=303.98 Aligned_cols=303 Identities=19% Similarity=0.251 Sum_probs=216.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+||||||+||||++|+++|+++||+|+++.|+....... ..+..+.. ...+++++.+|++|.+++.++++ ++|+
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~--~~d~ 80 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKV-KHLLDLPK-AETHLTLWKADLADEGSFDEAIK--GCTG 80 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHH-HHHHTSTT-HHHHEEEEECCTTSTTTTHHHHT--TCSE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHH-HHHHhccc-CCCeEEEEEcCCCCHHHHHHHHc--CCCE
Confidence 48999999999999999999999999999988876533211 11111100 01257889999999999999998 6999
Q ss_pred EEEccccccCCccccCc-chhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccc-cCCCC-CCCCCCCCCC---------C
Q 040584 82 VIHFAGLKAVGESVQKP-LPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATA-YGWPK-VVPCTEEFPL---------Q 148 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~-yg~~~-~~~~~e~~~~---------~ 148 (347)
|||+|+.... ...++ ...+++|+.++.+++++|++.+ ++|||++||..+ |+... ..+++|+.+. .
T Consensus 81 Vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 158 (337)
T 2c29_D 81 VFHVATPMDF--ESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKM 158 (337)
T ss_dssp EEECCCCCCS--SCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCC
T ss_pred EEEeccccCC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCC
Confidence 9999986521 22233 3588999999999999999887 899999999874 44322 2345666432 1
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHH---HHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQ---VAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~ 225 (347)
+.++|+.||.++|.+++.+++++ +++++++||++||||... .. +...+.. ...|....+ +
T Consensus 159 ~~~~Y~~sK~~~E~~~~~~~~~~-gi~~~~lrp~~v~Gp~~~-----~~-----~~~~~~~~~~~~~g~~~~~---~--- 221 (337)
T 2c29_D 159 TAWMYFVSKTLAEQAAWKYAKEN-NIDFITIIPTLVVGPFIM-----SS-----MPPSLITALSPITGNEAHY---S--- 221 (337)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECEEESCCSC-----SS-----CCHHHHHHTHHHHTCGGGH---H---
T ss_pred ccchHHHHHHHHHHHHHHHHHHc-CCcEEEEeCCceECCCCC-----CC-----CCchHHHHHHHHcCCCccc---c---
Confidence 44579999999999999887665 899999999999998421 11 1112211 123332111 1
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC-CCCcccCCCCCCCchhhc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVKSGRRPGDAEIVY 304 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~ 304 (347)
.+ ....|+|++|+|++++.+++. + ..++.|++++ ..+|+.|+++.+.+.++. +.+....+ .........
T Consensus 222 ---~~-~~~~~i~v~Dva~a~~~~~~~---~-~~~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~ 291 (337)
T 2c29_D 222 ---II-RQGQFVHLDDLCNAHIYLFEN---P-KAEGRYICSS-HDCIILDLAKMLREKYPEYNIPTEFKG-VDENLKSVC 291 (337)
T ss_dssp ---HH-TEEEEEEHHHHHHHHHHHHHC---T-TCCEEEEECC-EEEEHHHHHHHHHHHCTTSCCCSCCTT-CCTTCCCCE
T ss_pred ---cc-CCCCEEEHHHHHHHHHHHhcC---c-ccCceEEEeC-CCCCHHHHHHHHHHHCCCccCCCCCCc-ccCCCcccc
Confidence 11 234599999999999999876 2 2246787654 568999999999998742 33322211 112234567
Q ss_pred cChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 305 ASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 305 ~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
+|++|+ +.|||+|+++++++|+++++|++++..
T Consensus 292 ~d~~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~~ 324 (337)
T 2c29_D 292 FSSKKL-TDLGFEFKYSLEDMFTGAVDTCRAKGL 324 (337)
T ss_dssp ECCHHH-HHHTCCCCCCHHHHHHHHHHHHHHTTS
T ss_pred ccHHHH-HHcCCCcCCCHHHHHHHHHHHHHHcCC
Confidence 899999 789999999999999999999998754
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=300.05 Aligned_cols=298 Identities=16% Similarity=0.149 Sum_probs=230.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-----CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-----YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
+|+|||||||||||++|+++|+++| ++|++++|+..... . ...+++++.+|+.|.+++.+++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~--------~---~~~~~~~~~~Dl~d~~~~~~~~~~ 69 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW--------H---EDNPINYVQCDISDPDDSQAKLSP 69 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC--------C---CSSCCEEEECCTTSHHHHHHHHTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc--------c---ccCceEEEEeecCCHHHHHHHHhc
Confidence 4799999999999999999999999 99999999866432 0 134788999999999999999985
Q ss_pred CC-CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEE-------EeccccccCCC--CCCCCCCC
Q 040584 77 TK-FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLV-------FSSSATAYGWP--KVVPCTEE 144 (347)
Q Consensus 77 ~~-~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv-------~~SS~~~yg~~--~~~~~~e~ 144 (347)
.+ +|+|||+||... .++...+++|+.++.+++++|++. +++++| |+||..+||.. ...+++|+
T Consensus 70 ~~~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~ 144 (364)
T 2v6g_A 70 LTDVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTED 144 (364)
T ss_dssp CTTCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTT
T ss_pred CCCCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcc
Confidence 44 999999999652 356778999999999999999987 788998 89999999874 34678888
Q ss_pred CCCCC-CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHH--HHHH--HcCCCCceE
Q 040584 145 FPLQA-MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPF--VTQV--AVGRRPALT 219 (347)
Q Consensus 145 ~~~~~-~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~ 219 (347)
.+..+ .+.| ..+|+++++++++.++++++++||+++|||... .....+.+. +..+ ..+. .+.
T Consensus 145 ~~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~-------~~~~~~~~~~~~~~~~~~~g~--~~~ 211 (364)
T 2v6g_A 145 LPRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPY-------SMMNLVGTLCVYAAICKHEGK--VLR 211 (364)
T ss_dssp SCCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTT-------CSSCHHHHHHHHHHHHHHHTC--CBC
T ss_pred ccCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCC-------cccchHHHHHHHHHHHHhcCC--cee
Confidence 77655 6677 468999998876652399999999999998532 111223332 2323 2444 233
Q ss_pred EecccCCCCCC---ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcc--cCC
Q 040584 220 VFGTDYSTKDG---TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV--KSG 294 (347)
Q Consensus 220 ~~g~~~~~~~~---~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~--~~~ 294 (347)
++| ++ ....+++|++|+|++++.++++ +...+++||+++++++|+.|+++.+++.+|.+.+.. ..|
T Consensus 212 ~~g------~~~~~~~~~~~~~v~Dva~a~~~~~~~---~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p 282 (364)
T 2v6g_A 212 FTG------CKAAWDGYSDCSDADLIAEHHIWAAVD---PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVD 282 (364)
T ss_dssp CCS------CHHHHHSCBCCEEHHHHHHHHHHHHHC---GGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCC
T ss_pred cCC------CcccccccCCCCcHHHHHHHHHHHHhC---CCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 344 44 3457889999999999999986 223568999999999999999999999999775432 222
Q ss_pred CC----------------------CCCc--------------hh-hccChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 295 RR----------------------PGDA--------------EI-VYASTEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 295 ~~----------------------~~~~--------------~~-~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
.. +... .. ..+|++|+++ |||+|.++++++++++++||++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~g 361 (364)
T 2v6g_A 283 LKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAYK 361 (364)
T ss_dssp CCHHHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHcC
Confidence 11 1111 22 4789999988 999999999999999999999875
Q ss_pred C
Q 040584 338 Y 338 (347)
Q Consensus 338 ~ 338 (347)
+
T Consensus 362 ~ 362 (364)
T 2v6g_A 362 I 362 (364)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=295.69 Aligned_cols=304 Identities=20% Similarity=0.263 Sum_probs=211.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC-CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+||||||+||||++|+++|+++||+|+++.| ++..... ...+..+.. ...++.++.+|++|.+++.++++ ++|
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~--~~d 76 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD-VSFLTNLPG-ASEKLHFFNADLSNPDSFAAAIE--GCV 76 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CC-CHHHHTSTT-HHHHEEECCCCTTCGGGGHHHHT--TCS
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhH-HHHHHhhhc-cCCceEEEecCCCCHHHHHHHHc--CCC
Confidence 478999999999999999999999999999887 4321000 001111100 01246788899999999999998 699
Q ss_pred EEEEccccccCCccccCc-chhhhhhhhHHHHHHHHHHHc-CCCeEEEecccccc-CCC-CCCCCCCCCCC--------C
Q 040584 81 AVIHFAGLKAVGESVQKP-LPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAY-GWP-KVVPCTEEFPL--------Q 148 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~-~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~y-g~~-~~~~~~e~~~~--------~ 148 (347)
+|||+|+... ....++ ..++++|+.++.+++++|++. ++++||++||..++ +.. ...+++|+.+. .
T Consensus 77 ~vih~A~~~~--~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 154 (322)
T 2p4h_X 77 GIFHTASPID--FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVK 154 (322)
T ss_dssp EEEECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHC
T ss_pred EEEEcCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccC
Confidence 9999997532 222232 458999999999999999987 78899999998754 332 22355666532 2
Q ss_pred CCC-chhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 149 AMN-PYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 149 ~~~-~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
|.. .|+.||..+|.+++++++.. +++++++||+++|||... .. .. .....+.....+....+ +
T Consensus 155 p~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~lrp~~v~g~~~~-----~~-~~-~~~~~~~~~~~g~~~~~---~----- 218 (322)
T 2p4h_X 155 PFGWNYAVSKTLAEKAVLEFGEQN-GIDVVTLILPFIVGRFVC-----PK-LP-DSIEKALVLVLGKKEQI---G----- 218 (322)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEECEEESCCCS-----SS-CC-HHHHHHTHHHHSCGGGC---C-----
T ss_pred cccccHHHHHHHHHHHHHHHHHhc-CCcEEEEcCCceECCCCC-----CC-CC-chHHHHHHHHhCCCccC---c-----
Confidence 233 69999999999999987764 899999999999998421 10 11 11222222234432111 1
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC-CCCccc-CCCCCCCchhhcc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVK-SGRRPGDAEIVYA 305 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~-~~~~~~-~~~~~~~~~~~~~ 305 (347)
. ..++|+|++|+|++++.+++. +... +.|| ++++.+|+.|+++.+.+.++. +.+... ...... .....+
T Consensus 219 -~--~~~~~i~v~Dva~a~~~~~~~---~~~~-g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 289 (322)
T 2p4h_X 219 -V--TRFHMVHVDDVARAHIYLLEN---SVPG-GRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKG-ARLPDL 289 (322)
T ss_dssp -E--EEEEEEEHHHHHHHHHHHHHS---CCCC-EEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCC-EECCEE
T ss_pred -C--CCcCEEEHHHHHHHHHHHhhC---cCCC-CCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCC-Ccceec
Confidence 2 334899999999999999976 2233 4599 567889999999999988752 222110 000111 145678
Q ss_pred ChHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 306 STEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 306 d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
|++|+ +.|||+|+++++++|+++++|++++.
T Consensus 290 d~~k~-~~lG~~p~~~~~~~l~~~~~~~~~~~ 320 (322)
T 2p4h_X 290 NTKKL-VDAGFDFKYTIEDMFDDAIQCCKEKG 320 (322)
T ss_dssp CCHHH-HHTTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred ccHHH-HHhCCccCCCHHHHHHHHHHHHHhcC
Confidence 99999 66999999999999999999998753
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=287.58 Aligned_cols=277 Identities=16% Similarity=0.149 Sum_probs=208.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|||||||||||||++|+++|+++||+|+++.|++... . +..| +...+.++ ++|+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~----------------~---~~~~----~~~~~~l~--~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG----------------R---ITWD----ELAASGLP--SCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT----------------E---EEHH----HHHHHCCC--SCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC----------------e---eecc----hhhHhhcc--CCCEE
Confidence 7899999999999999999999999999999975432 1 1122 22234455 69999
Q ss_pred EEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcCC--CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhh
Q 040584 83 IHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGC--KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRS 156 (347)
Q Consensus 83 ih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~--~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~s 156 (347)
||+|+...... +......+++.|+.++.+++++++..+. .++|+.||+++||.....+.+|++|..+.+.|+..
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~~~~ 135 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNL 135 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHHHHH
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCccccchhHHH
Confidence 99998542221 1223345788899999999999998764 36999999999999999999999999898889888
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
|...|.... ... .+++++++|++.||||.. ..+..++.....+... .+| ++++.++|
T Consensus 136 ~~~~e~~~~--~~~-~~~~~~~~r~~~v~g~~~-----------~~~~~~~~~~~~~~~~---~~g------~g~~~~~~ 192 (298)
T 4b4o_A 136 VTKWEAAAR--LPG-DSTRQVVVRSGVVLGRGG-----------GAMGHMLLPFRLGLGG---PIG------SGHQFFPW 192 (298)
T ss_dssp HHHHHHHHC--CSS-SSSEEEEEEECEEECTTS-----------HHHHHHHHHHHTTCCC---CBT------TSCSBCCE
T ss_pred HHHHHHHHH--hhc-cCCceeeeeeeeEEcCCC-----------CchhHHHHHHhcCCcc---eec------ccCceeec
Confidence 877776432 223 488999999999999831 1233455555555432 234 78999999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC-----C-C-----chhhcc
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP-----G-D-----AEIVYA 305 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-----~-~-----~~~~~~ 305 (347)
||++|+++++..++++ + ...++||+++++++|+.|+++.+++.+|++..+ +.|... + . .....+
T Consensus 193 ihv~Dva~a~~~~~~~---~-~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~-pvP~~~~~~~~g~~~~~~~l~~~rv 267 (298)
T 4b4o_A 193 IHIGDLAGILTHALEA---N-HVHGVLNGVAPSSATNAEFAQTFGAALGRRAFI-PLPSAVVQAVFGRQRAIMLLEGQKV 267 (298)
T ss_dssp EEHHHHHHHHHHHHHC---T-TCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCC-CBCHHHHHHHHCHHHHHHHHCCCCB
T ss_pred CcHHHHHHHHHHHHhC---C-CCCCeEEEECCCccCHHHHHHHHHHHhCcCCcc-cCCHHHHHHHhcchhHHHhhCCCEE
Confidence 9999999999999987 2 344799999999999999999999999976532 222110 0 0 012346
Q ss_pred ChHHHHHhcCCcccc-cHHHHHHHHHHHH
Q 040584 306 STEKAERELNWKAKY-GIDEMCRDQWNWA 333 (347)
Q Consensus 306 d~~k~~~~lg~~p~~-~~~~~i~~~~~~~ 333 (347)
+++|++ .+||+++| +++++|+++++.+
T Consensus 268 ~~~kl~-~~Gf~f~yp~l~~al~~l~~~l 295 (298)
T 4b4o_A 268 IPRRTL-ATGYQYSFPELGAALKEIAENL 295 (298)
T ss_dssp CCHHHH-HTTCCCSCCSHHHHHHHHHHCC
T ss_pred cHHHHH-HCCCCCCCCCHHHHHHHHHHhh
Confidence 788985 58999998 7999999998743
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=280.13 Aligned_cols=266 Identities=17% Similarity=0.134 Sum_probs=212.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+||||+||||++++++|++ |++|++++|+.... .+ +.+|++|.+++.+++++.++|+|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~---------------~~---~~~Dl~~~~~~~~~~~~~~~d~v 61 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ---------------GG---YKLDLTDFPRLEDFIIKKRPDVI 61 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT---------------TC---EECCTTSHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC---------------CC---ceeccCCHHHHHHHHHhcCCCEE
Confidence 4799999999999999999994 89999999876421 12 78999999999999985459999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+||........+++...+++|+.++.+++++|++.+. +||++||..+|+.... +++|+.+..|.+.|+.+|.++|.
T Consensus 62 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~-~~~e~~~~~~~~~Y~~sK~~~e~ 139 (273)
T 2ggs_A 62 INAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKG-NYKEEDIPNPINYYGLSKLLGET 139 (273)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSC-SBCTTSCCCCSSHHHHHHHHHHH
T ss_pred EECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCC-CcCCCCCCCCCCHHHHHHHHHHH
Confidence 999997654333456778999999999999999998876 9999999999976543 78888888888999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
+++. ++++++||+.+||+. .+.. ++.....+. .+.+++ + .++++|++|
T Consensus 140 ~~~~-------~~~~~iR~~~v~G~~-------------~~~~~~~~~~~~~~--~~~~~~--------~-~~~~~~~~d 188 (273)
T 2ggs_A 140 FALQ-------DDSLIIRTSGIFRNK-------------GFPIYVYKTLKEGK--TVFAFK--------G-YYSPISARK 188 (273)
T ss_dssp HHCC-------TTCEEEEECCCBSSS-------------SHHHHHHHHHHTTC--CEEEES--------C-EECCCBHHH
T ss_pred HHhC-------CCeEEEecccccccc-------------HHHHHHHHHHHcCC--CEEeec--------C-CCCceEHHH
Confidence 8865 457999999999831 2333 334444544 233333 2 789999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccC----CCCCCCchhhccChHHHHHhcCCc
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS----GRRPGDAEIVYASTEKAERELNWK 317 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~----~~~~~~~~~~~~d~~k~~~~lg~~ 317 (347)
+|+++..++++. . +++||+++ +.+|+.|+++.+.+.+|.+.++... ...+.......+|++|+++.|||+
T Consensus 189 va~~i~~~~~~~----~-~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 262 (273)
T 2ggs_A 189 LASAILELLELR----K-TGIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTD 262 (273)
T ss_dssp HHHHHHHHHHHT----C-CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSC
T ss_pred HHHHHHHHHhcC----c-CCeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCC
Confidence 999999999872 2 46999998 9999999999999999988654321 112233456789999999999999
Q ss_pred c-cccHHHHH
Q 040584 318 A-KYGIDEMC 326 (347)
Q Consensus 318 p-~~~~~~~i 326 (347)
| .+++++++
T Consensus 263 p~~~~l~~~~ 272 (273)
T 2ggs_A 263 FYTLDLDGMV 272 (273)
T ss_dssp CCSCCGGGCC
T ss_pred CCCccccccc
Confidence 9 67888765
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-38 Score=298.84 Aligned_cols=281 Identities=16% Similarity=0.159 Sum_probs=205.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|||||||||||++|++.|+++||+|++++|+.... ..+.+|+.+. +.++++ ++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~------------------~~v~~d~~~~--~~~~l~--~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP------------------GKRFWDPLNP--ASDLLD--GADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT------------------TCEECCTTSC--CTTTTT--TCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc------------------cceeecccch--hHHhcC--CCCE
Confidence 57999999999999999999999999999999986643 1256777643 345555 6999
Q ss_pred EEEccccccCCc-cccCcchhhhhhhhHHHHHHHH-HHHcCCCeEEEeccccccC-CCCCCCCCCCCCCCCCCchhhhHH
Q 040584 82 VIHFAGLKAVGE-SVQKPLPYFDNNLTGTITLLEV-MAAHGCKNLVFSSSATAYG-WPKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 82 vih~a~~~~~~~-~~~~~~~~~~~nv~~~~~l~~~-~~~~~~~~iv~~SS~~~yg-~~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
|||+||...... ....+..++++|+.++.+++++ +++.++++||++||+++|| .....+++|+.+. +.+.|+.+|.
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~-~~~~y~~~~~ 283 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES-GDDFLAEVCR 283 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC-CSSHHHHHHH
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC-CcChHHHHHH
Confidence 999999754322 3345567889999999999999 5666788999999999998 4555678888876 7789999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
..|.++..+.. .+++++++||++||||. ..+.+ ++..+..+.. ..+| ++++.++||
T Consensus 284 ~~E~~~~~~~~--~gi~~~ilRp~~v~Gp~------------~~~~~~~~~~~~~g~~---~~~g------~g~~~~~~i 340 (516)
T 3oh8_A 284 DWEHATAPASD--AGKRVAFIRTGVALSGR------------GGMLPLLKTLFSTGLG---GKFG------DGTSWFSWI 340 (516)
T ss_dssp HHHHTTHHHHH--TTCEEEEEEECEEEBTT------------BSHHHHHHHTTC---C---CCCT------TSCCEECEE
T ss_pred HHHHHHHHHHh--CCCCEEEEEeeEEECCC------------CChHHHHHHHHHhCCC---cccC------CCCceEceE
Confidence 99988765433 38999999999999983 11333 3333333322 1233 788999999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC----CCC-------chhhccC
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR----PGD-------AEIVYAS 306 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----~~~-------~~~~~~d 306 (347)
|++|+|++++.++++ + ..+++||+++++++|+.|+++.+++.+|.+..+...... ... .....++
T Consensus 341 ~v~Dva~ai~~~l~~---~-~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~ 416 (516)
T 3oh8_A 341 AIDDLTDIYYRAIVD---A-QISGPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTA 416 (516)
T ss_dssp EHHHHHHHHHHHHHC---T-TCCEEEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEEC
T ss_pred eHHHHHHHHHHHHhC---c-ccCCcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeec
Confidence 999999999999987 2 234799999999999999999999999976532211110 011 1233468
Q ss_pred hHHHHHhcCCccccc-HHHHHHHHHHHH
Q 040584 307 TEKAERELNWKAKYG-IDEMCRDQWNWA 333 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~-~~~~i~~~~~~~ 333 (347)
++|++ .|||+|+++ ++++|+++++..
T Consensus 417 ~~kl~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 417 PAALE-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp CHHHH-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred hHHHH-HCCCCCCCCCHHHHHHHHhCcc
Confidence 89997 689999996 999999999754
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=288.80 Aligned_cols=308 Identities=14% Similarity=0.108 Sum_probs=219.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH---HHHHHHHHh-----hccCCCCeEEEecCCCCHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE---IAVAKVKEL-----AGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
+|+|||||||||||++|+++|++.|++|+++.|+..... ...+.+... ......++.++.+|++|.+.+. .
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~ 147 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-L 147 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC-C
T ss_pred CCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC-C
Confidence 468999999999999999999999999999999887332 222222221 0111358999999999988777 4
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC-----CCCCCCCCCCC--
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW-----PKVVPCTEEFP-- 146 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~-----~~~~~~~e~~~-- 146 (347)
+. ++|+|||+||.... ..++...+++|+.++.+++++|++ ++++||++||..+ |. ....+++|+++
T Consensus 148 ~~--~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~ 220 (427)
T 4f6c_A 148 PE--NMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK 220 (427)
T ss_dssp SS--CCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCS
T ss_pred cC--CCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCcccccccccc
Confidence 44 79999999997642 345678899999999999999999 7889999999998 54 23456778776
Q ss_pred -CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 147 -LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 147 -~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
..+.+.|+.+|+++|.+++.+++. +++++++||++||||...+..... .....+..++.....+. .++. +
T Consensus 221 ~~~~~~~Y~~sK~~~E~~~~~~~~~--g~~~~ivRpg~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-~--- 291 (427)
T 4f6c_A 221 GQLLTSPYTRSKFYSELKVLEAVNN--GLDGRIVRVGNLTSPYNGRWHMRN-IKTNRFSMVMNDLLQLD--CIGV-S--- 291 (427)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHHHT--TCCEEEEEECCEESCSSSCCCCTT-GGGCHHHHHHHHHHHSS--EEEH-H---
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHc--CCCEEEEeCCeeecCCCCCccccC-cchHHHHHHHHHHHhcC--CCCC-c---
Confidence 557899999999999999998653 899999999999998543221100 00112334566655543 2221 1
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCC-C-----CCC-
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG-R-----RPG- 298 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~-----~~~- 298 (347)
.++..++|++++|+|++++.++.. +. .+++||+++++++++.|+++.+.+ +| .+....+ + ...
T Consensus 292 ---~~~~~~~~v~v~DvA~ai~~~~~~---~~-~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~~~ 361 (427)
T 4f6c_A 292 ---MAEMPVDFSFVDTTARQIVALAQV---NT-PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQDM 361 (427)
T ss_dssp ---HHTCEECCEEHHHHHHHHHHHTTS---CC-CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHTTC
T ss_pred ---cccceEEEeeHHHHHHHHHHHHcC---CC-CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhcCc
Confidence 357889999999999999999887 23 679999999999999999999998 56 2111100 0 000
Q ss_pred -----------CchhhccChHHHH---HhcCCcccccHHHHHHHHHHHHhhC
Q 040584 299 -----------DAEIVYASTEKAE---RELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 299 -----------~~~~~~~d~~k~~---~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
......+|+++.. +.+||.+...-++.++++++++.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~ 413 (427)
T 4f6c_A 362 YETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 413 (427)
T ss_dssp HHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 0113456777766 5569988866667899999988775
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=267.35 Aligned_cols=259 Identities=14% Similarity=0.166 Sum_probs=202.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|||||||||||++++++|+++ |++|++++|++.+..... ..+++++.+|+.|.+++.++++ ++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~----------~~~~~~~~~D~~d~~~l~~~~~--~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA----------DQGVEVRHGDYNQPESLQKAFA--GVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH----------HTTCEEEECCTTCHHHHHHHTT--TCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh----------hcCCeEEEeccCCHHHHHHHHh--cCC
Confidence 57999999999999999999999 999999999876543221 1367899999999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+|+... .. ++|+.++.+++++|++.+++|||++||..+|.. ..+|+.+|.++
T Consensus 69 ~vi~~a~~~~--------~~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~--------------~~~y~~~K~~~ 124 (287)
T 2jl1_A 69 KLLFISGPHY--------DN--TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES--------------IIPLAHVHLAT 124 (287)
T ss_dssp EEEECCCCCS--------CH--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC--------------CSTHHHHHHHH
T ss_pred EEEEcCCCCc--------Cc--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC--------------CCchHHHHHHH
Confidence 9999998521 11 569999999999999999999999999988621 13799999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH-cCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA-VGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++. .+++++++||+.++|+. ... ++.... .+. .. .+ .++..++++|+
T Consensus 125 E~~~~~-----~~~~~~ilrp~~~~~~~----------~~~----~~~~~~~~~~---~~-~~------~~~~~~~~i~~ 175 (287)
T 2jl1_A 125 EYAIRT-----TNIPYTFLRNALYTDFF----------VNE----GLRASTESGA---IV-TN------AGSGIVNSVTR 175 (287)
T ss_dssp HHHHHH-----TTCCEEEEEECCBHHHH----------SSG----GGHHHHHHTE---EE-ES------CTTCCBCCBCH
T ss_pred HHHHHH-----cCCCeEEEECCEecccc----------chh----hHHHHhhCCc---ee-cc------CCCCccCccCH
Confidence 999864 38999999999888752 011 122222 222 22 22 46778899999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC-----------CCCc--------
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR-----------PGDA-------- 300 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----------~~~~-------- 300 (347)
+|+|+++..++++ +...+++||+++++.+|+.|+++.+.+.+|.+.++...+.. +...
T Consensus 176 ~Dva~~~~~~~~~---~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (287)
T 2jl1_A 176 NELALAAATVLTE---EGHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIY 252 (287)
T ss_dssp HHHHHHHHHHHTS---SSCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999976 23456899999999999999999999999988665443311 1100
Q ss_pred -----hhhccChHHHHHhcCCcccccHHHHHHHHHH
Q 040584 301 -----EIVYASTEKAERELNWKAKYGIDEMCRDQWN 331 (347)
Q Consensus 301 -----~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~ 331 (347)
.....|++|+++.|| |..+++|+++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 253 DAISKGEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp HHHHTTTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred HHHhCCCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 123567899999999 66699999999875
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=266.91 Aligned_cols=259 Identities=14% Similarity=0.151 Sum_probs=196.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|||||||||++++++|+++ |++|++++|++.+..... ..++.++.+|+.|.+++.++++ ++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~--~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA----------AQGITVRQADYGDEAALTSALQ--GVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH----------HTTCEEEECCTTCHHHHHHHTT--TCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh----------cCCCeEEEcCCCCHHHHHHHHh--CCCE
Confidence 5899999999999999999999 999999999876543221 1367889999999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+|+... ..|+.++.+++++|++.++++||++||..+|. ...+|+.+|.++|
T Consensus 69 vi~~a~~~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~--------------~~~~y~~sK~~~e 122 (286)
T 2zcu_A 69 LLLISSSEV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT--------------SPLGLADEHIETE 122 (286)
T ss_dssp EEECC--------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT--------------CCSTTHHHHHHHH
T ss_pred EEEeCCCCc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC--------------CcchhHHHHHHHH
Confidence 999998521 14788999999999999999999999998861 1147999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
.+++. .+++++++||+.++++. ..++.+...+. .+. ++ .++..++++|++|
T Consensus 123 ~~~~~-----~~~~~~ilrp~~~~~~~---------------~~~~~~~~~~~--~~~-~~------~~~~~~~~i~~~D 173 (286)
T 2zcu_A 123 KMLAD-----SGIVYTLLRNGWYSENY---------------LASAPAALEHG--VFI-GA------AGDGKIASATRAD 173 (286)
T ss_dssp HHHHH-----HCSEEEEEEECCBHHHH---------------HTTHHHHHHHT--EEE-ES------CTTCCBCCBCHHH
T ss_pred HHHHH-----cCCCeEEEeChHHhhhh---------------HHHhHHhhcCC--cee-cc------CCCCccccccHHH
Confidence 99875 28999999998766531 11222222222 222 23 5678899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC--------CCc-------------
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP--------GDA------------- 300 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~------------- 300 (347)
+|+++..++.+ +...+++||+++++.+|+.|+++.+.+.+|.+.++...+... ..+
T Consensus 174 va~~~~~~~~~---~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (286)
T 2zcu_A 174 YAAAAARVISE---AGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVG 250 (286)
T ss_dssp HHHHHHHHHHS---SSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999987 234678999999989999999999999999876544433210 101
Q ss_pred ---hhhccChHHHHHhcCCcccccHHHHHHHHHHHH
Q 040584 301 ---EIVYASTEKAERELNWKAKYGIDEMCRDQWNWA 333 (347)
Q Consensus 301 ---~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~ 333 (347)
.....|++|+++.|||+|. +++++|+++++||
T Consensus 251 ~~~~~~~~~~~~~~~~lg~~~~-~~~e~l~~~~~~~ 285 (286)
T 2zcu_A 251 ASKGGLFDDSKTLSKLIGHPTT-TLAESVSHLFNVN 285 (286)
T ss_dssp HHTTTTCCCCCHHHHHHTSCCC-CHHHHHHGGGC--
T ss_pred HhCCCCccCchHHHHHhCcCCC-CHHHHHHHHHhhc
Confidence 0144678999999998555 9999999999887
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=263.51 Aligned_cols=237 Identities=21% Similarity=0.276 Sum_probs=195.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||+||||||+||||++|+++|+++|++|++++|+..... ..++.++.+|++|.+++.++++ ++|
T Consensus 1 M~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~--~~d 65 (267)
T 3ay3_A 1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-------------EAHEEIVACDLADAQAVHDLVK--DCD 65 (267)
T ss_dssp CEEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-------------CTTEEECCCCTTCHHHHHHHHT--TCS
T ss_pred CCceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-------------CCCccEEEccCCCHHHHHHHHc--CCC
Confidence 7889999999999999999999999999999998765321 1357889999999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC-CCCCCCCCCCCCCCCchhhhHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP-KVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~-~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
+|||+||... ...+...+++|+.++.++++++++.++++||++||..+|+.. ...+++|+.+..|.+.|+.+|.+
T Consensus 66 ~vi~~a~~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~ 141 (267)
T 3ay3_A 66 GIIHLGGVSV----ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCF 141 (267)
T ss_dssp EEEECCSCCS----CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHHHHH
T ss_pred EEEECCcCCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHHHHH
Confidence 9999999752 234567889999999999999999888999999999999864 45678999999999999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
+|.+++.+.++. +++++++||+++|+. + . ++...++++|+
T Consensus 142 ~e~~~~~~~~~~-gi~~~~lrp~~v~~~-~-------~-------------------------------~~~~~~~~~~~ 181 (267)
T 3ay3_A 142 GEDLASLYYHKF-DIETLNIRIGSCFPK-P-------K-------------------------------DARMMATWLSV 181 (267)
T ss_dssp HHHHHHHHHHTT-CCCEEEEEECBCSSS-C-------C-------------------------------SHHHHHHBCCH
T ss_pred HHHHHHHHHHHc-CCCEEEEeceeecCC-C-------C-------------------------------CCCeeeccccH
Confidence 999999887664 899999999999942 0 0 12334578999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCccc
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAK 319 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~ 319 (347)
+|+|+++..+++. +...+++|++.++. ...+.|..++ +.|||+|+
T Consensus 182 ~dva~~~~~~~~~---~~~~~~~~~~~~~~-------------------------------~~~~~d~~~~-~~lg~~p~ 226 (267)
T 3ay3_A 182 DDFMRLMKRAFVA---PKLGCTVVYGASAN-------------------------------TESWWDNDKS-AFLGWVPQ 226 (267)
T ss_dssp HHHHHHHHHHHHS---SCCCEEEEEECCSC-------------------------------SSCCBCCGGG-GGGCCCCC
T ss_pred HHHHHHHHHHHhC---CCCCceeEecCCCc-------------------------------cccccCHHHH-HHcCCCCC
Confidence 9999999999987 22335778775432 1233577777 88999999
Q ss_pred ccHHHHHHHHHH
Q 040584 320 YGIDEMCRDQWN 331 (347)
Q Consensus 320 ~~~~~~i~~~~~ 331 (347)
++++++++++.+
T Consensus 227 ~~~~~~~~~~~~ 238 (267)
T 3ay3_A 227 DSSEIWREEIEQ 238 (267)
T ss_dssp CCGGGGHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 999999988875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=277.44 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=204.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC---CCeEEEEeCCCchhHHHHHHHHHhhc------------cCCCCeEEEecCCC-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG---GYKTVVVDNLDNASEIAVAKVKELAG------------YQGNNMTFHKLDLR- 65 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Dl~- 65 (347)
+|+|||||||||||++|+++|++. |++|+++.|+...... ...+.+... ....++.++.+|++
T Consensus 73 ~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~ 151 (478)
T 4dqv_A 73 LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE 151 (478)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence 589999999999999999999999 9999999998765432 222221111 11358999999998
Q ss_pred -----CHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCC
Q 040584 66 -----DKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVP 140 (347)
Q Consensus 66 -----d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~ 140 (347)
|.+.+.++++ ++|+|||+||.... ..+...+++|+.++.+++++|++.++++||++||.++|+.....+
T Consensus 152 ~~~gld~~~~~~~~~--~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 152 PDLGLDQPMWRRLAE--TVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp GGGGCCHHHHHHHHH--HCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTT
T ss_pred cccCCCHHHHHHHHc--CCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCC
Confidence 6778999998 69999999997653 456788999999999999999999999999999999999877778
Q ss_pred CCCCCCCCCCC-----------chhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHH
Q 040584 141 CTEEFPLQAMN-----------PYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQ 209 (347)
Q Consensus 141 ~~e~~~~~~~~-----------~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 209 (347)
++|+.+..+.+ .|+.+|.++|.+++.++.+. +++++++||++|||+.... +. ......+..++..
T Consensus 226 ~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ivRpg~v~G~~~~~-g~--~~~~~~~~~l~~~ 301 (478)
T 4dqv_A 226 FTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC-ALPVAVFRCGMILADTSYA-GQ--LNMSDWVTRMVLS 301 (478)
T ss_dssp CCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH-CCCEEEEEECEEECCSSSS-SC--CCTTBHHHHHHHH
T ss_pred cCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh-CCCeEEEECceeeCCCccC-Cc--CCHHHHHHHHHHH
Confidence 88887654443 49999999999999998765 8999999999999984211 10 0111223334443
Q ss_pred HH-cCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCC-CCCCCeeEEccCCCc--ccHHHHHHHHHHHhC
Q 040584 210 VA-VGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDD-PKVGCEVYNLGTGKG--TSVLEMVAAFEKASG 285 (347)
Q Consensus 210 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~-~~~~~~~~nv~~~~~--~s~~e~~~~i~~~~g 285 (347)
.. .|..+. .+++.....+.++..++++|++|+|++++.++.+... +...+++||+++++. +|+.|+++.+.+. |
T Consensus 302 ~~~~g~~P~-~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~-g 379 (478)
T 4dqv_A 302 LMATGIAPR-SFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA-G 379 (478)
T ss_dssp HHHHCEEES-CSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT-T
T ss_pred HHHcCcccc-cccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc-C
Confidence 32 232111 1111000000126789999999999999999875211 235679999999987 9999999999985 7
Q ss_pred CCCC
Q 040584 286 KKIP 289 (347)
Q Consensus 286 ~~~~ 289 (347)
.+.+
T Consensus 380 ~~~~ 383 (478)
T 4dqv_A 380 YPIR 383 (478)
T ss_dssp CSCE
T ss_pred CCcc
Confidence 6653
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=287.17 Aligned_cols=310 Identities=13% Similarity=0.091 Sum_probs=220.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH---HHHHHHHh-----hccCCCCeEEEecCCCCHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI---AVAKVKEL-----AGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
+|+|||||||||||++|+++|++.|++|+++.|+...... ..+.+... ......++.++.+|+.|.+.+. +
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~ 228 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-L 228 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-C
T ss_pred CCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-C
Confidence 3789999999999999999999999999999998874322 22222211 1112468999999999977777 4
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC-----CCCCCCCCCCC--
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW-----PKVVPCTEEFP-- 146 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~-----~~~~~~~e~~~-- 146 (347)
+. ++|+|||+||... ....+...+++|+.++.+++++|++ +.++|||+||..+ |. ....+++|+++
T Consensus 229 ~~--~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~ 301 (508)
T 4f6l_B 229 PE--NMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK 301 (508)
T ss_dssp SS--CCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCS
T ss_pred cc--CCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCcccccccccc
Confidence 44 7999999999764 2345577889999999999999998 6789999999999 43 23456777766
Q ss_pred -CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 147 -LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 147 -~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
..+.+.|+.+|+.+|.+++.+.+ .+++++++||++||||...+..... .....+..++.....+. .++.
T Consensus 302 ~~~~~~~Y~~sK~~~E~~~~~~~~--~gi~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~i~~~~~~~--~~~~----- 371 (508)
T 4f6l_B 302 GQLLTSPYTRSKFYSELKVLEAVN--NGLDGRIVRVGNLTSPYNGRWHMRN-IKTNRFSMVMNDLLQLD--CIGV----- 371 (508)
T ss_dssp SBCCCSHHHHHHHHHHHHHHHHHH--TTCEEEEEEECCEESCSSSCCCCTT-CTTCHHHHHHHHHTTCS--EEET-----
T ss_pred cccCCCcHHHHHHHHHHHHHHHHH--cCCCEEEEecceeccCCCCCcccCC-cchHHHHHHHHHHHHcC--CCCC-----
Confidence 44789999999999999999865 3999999999999998643321100 01112344555554432 2221
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc-c-c----CCCC---
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL-V-K----SGRR--- 296 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~-~-~----~~~~--- 296 (347)
+.+++.++|+|++|+|++++.++.. +. .+++||+++++++|+.|+++.+.+.. .+... . + ....
T Consensus 372 --~~g~~~~~~v~v~DvA~ai~~~~~~---~~-~~~~~nl~~~~~~s~~el~~~i~~~~-~~~~~~~~w~~~l~~~~~~~ 444 (508)
T 4f6l_B 372 --SMAEMPVDFSFVDTTARQIVALAQV---NT-PQIIYHVLSPNKMPVKSLLECVKRKE-IELVSDESFNEILQKQDMYE 444 (508)
T ss_dssp --TGGGSEEECEEHHHHHHHHHHHTTB---CC-SCSEEEESCSCEEEHHHHHHHHHSSC-CEEECHHHHHHHHHTTCCHH
T ss_pred --CccCceEEEEcHHHHHHHHHHHHhC---CC-CCCEEEeCCCCCCCHHHHHHHHHHcC-CcccCHHHHHHHHHhcCCcc
Confidence 1368899999999999999999987 23 67999999999999999999998754 11100 0 0 0000
Q ss_pred -------CCCchhhccChHHHH---HhcCCcccccHHHHHHHHHHHHhhC
Q 040584 297 -------PGDAEIVYASTEKAE---RELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 297 -------~~~~~~~~~d~~k~~---~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
........+|+++.. +.+||.+...-++.++++++|+.+.
T Consensus 445 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 445 TIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 494 (508)
T ss_dssp HHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHH
T ss_pred chhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 001123446766665 4569998877788899999988775
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=264.70 Aligned_cols=268 Identities=21% Similarity=0.308 Sum_probs=202.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|+|||||||||||++++++|+++ |+ +|++++|+..+.......+. ..++.++.+|++|.+.+.++++ ++
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~v~~~~~Dl~d~~~l~~~~~--~~ 92 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN------DPRMRFFIGDVRDLERLNYALE--GV 92 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC------CTTEEEEECCTTCHHHHHHHTT--TC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc------CCCEEEEECCCCCHHHHHHHHh--cC
Confidence 479999999999999999999999 97 99999997554433332221 2578999999999999999998 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||+||.........++...+++|+.++.+++++|++.++++||++||..++ .|.++|+.+|.+
T Consensus 93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~--------------~p~~~Y~~sK~~ 158 (344)
T 2gn4_A 93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA--------------NPINLYGATKLC 158 (344)
T ss_dssp SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS--------------SCCSHHHHHHHH
T ss_pred CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC--------------CCccHHHHHHHH
Confidence 999999997653334456778999999999999999999999999999998764 346799999999
Q ss_pred HHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 160 IEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 160 ~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
+|.+++.++++. .+++++++|||+||||. ..+.+ ++.++..|+. .+.+. +++..++|
T Consensus 159 ~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~------------~~~i~~~~~~~~~g~~-~~~i~-------~~~~~r~~ 218 (344)
T 2gn4_A 159 SDKLFVSANNFKGSSQTQFSVVRYGNVVGSR------------GSVVPFFKKLVQNKAS-EIPIT-------DIRMTRFW 218 (344)
T ss_dssp HHHHHHHGGGCCCSSCCEEEEECCCEETTCT------------TSHHHHHHHHHHHTCC-CEEES-------CTTCEEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeccEECCC------------CCHHHHHHHHHHcCCC-ceEEe-------CCCeEEee
Confidence 999999887642 37999999999999973 12444 4555556541 23322 46778999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCC-chhhccChHHHHHhcC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGD-AEIVYASTEKAERELN 315 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~d~~k~~~~lg 315 (347)
+|++|+|++++.++++ ...+++||++++ .+|+.|+++.+.+.++. ...+.++.+ .....++..+.++.++
T Consensus 219 i~v~D~a~~v~~~l~~----~~~g~~~~~~~~-~~s~~el~~~i~~~~~~----~~~~~~~~e~~~e~~~~~~~~~~~~~ 289 (344)
T 2gn4_A 219 ITLDEGVSFVLKSLKR----MHGGEIFVPKIP-SMKMTDLAKALAPNTPT----KIIGIRPGEKLHEVMIPKDESHLALE 289 (344)
T ss_dssp ECHHHHHHHHHHHHHH----CCSSCEEEECCC-EEEHHHHHHHHCTTCCE----EECCCCTTCCSSCEEECGGGGGGEEE
T ss_pred EEHHHHHHHHHHHHhh----ccCCCEEecCCC-cEEHHHHHHHHHHhCCe----eEcCCCCCccHhhhccCHhHHHhhcc
Confidence 9999999999999987 235689998765 69999999999865432 222222221 1223345555555555
Q ss_pred Ccccc
Q 040584 316 WKAKY 320 (347)
Q Consensus 316 ~~p~~ 320 (347)
|..-+
T Consensus 290 ~~~~~ 294 (344)
T 2gn4_A 290 FEDFF 294 (344)
T ss_dssp CSSEE
T ss_pred CCCEE
Confidence 55443
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=249.62 Aligned_cols=224 Identities=17% Similarity=0.162 Sum_probs=175.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||+|+|||||||||++++++|+++|++|++++|++..... ...++.++.+|+.|.+++.++++ ++|+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------~~~~~~~~~~Dl~d~~~~~~~~~--~~d~ 70 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI-----------ENEHLKVKKADVSSLDEVCEVCK--GADA 70 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC-----------CCTTEEEECCCTTCHHHHHHHHT--TCSE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh-----------ccCceEEEEecCCCHHHHHHHhc--CCCE
Confidence 4799999999999999999999999999999998664321 12578999999999999999999 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+||.... . ...+++|+.++.+++++|++.+++|||++||..+|+..... ..|+.+..|.+.|+.+|.++|
T Consensus 71 vi~~a~~~~~-----~-~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~-~~~~~~~~p~~~Y~~sK~~~e 143 (227)
T 3dhn_A 71 VISAFNPGWN-----N-PDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGL-RLMDSGEVPENILPGVKALGE 143 (227)
T ss_dssp EEECCCC------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTE-EGGGTTCSCGGGHHHHHHHHH
T ss_pred EEEeCcCCCC-----C-hhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCC-ccccCCcchHHHHHHHHHHHH
Confidence 9999986421 1 23788999999999999999999999999999987543322 244566678899999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
.+++.++++. +++++++||+++|||... ... + ..+....+. .++. ++++|++|
T Consensus 144 ~~~~~~~~~~-~~~~~ilrp~~v~g~~~~-----~~~----~-------~~~~~~~~~---------~~~~-~~~i~~~D 196 (227)
T 3dhn_A 144 FYLNFLMKEK-EIDWVFFSPAADMRPGVR-----TGR----Y-------RLGKDDMIV---------DIVG-NSHISVED 196 (227)
T ss_dssp HHHHTGGGCC-SSEEEEEECCSEEESCCC-----CCC----C-------EEESSBCCC---------CTTS-CCEEEHHH
T ss_pred HHHHHHhhcc-CccEEEEeCCcccCCCcc-----ccc----e-------eecCCCccc---------CCCC-CcEEeHHH
Confidence 9998887664 999999999999998421 110 0 011111111 2222 79999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
+|++++.++++ +...+++|+++++++.++.+
T Consensus 197 va~ai~~~l~~---~~~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 197 YAAAMIDELEH---PKHHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp HHHHHHHHHHS---CCCCSEEEEEECCSCCC---
T ss_pred HHHHHHHHHhC---ccccCcEEEEEeehhcccCC
Confidence 99999999998 45678999999999988753
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=266.54 Aligned_cols=252 Identities=19% Similarity=0.183 Sum_probs=196.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|+|||||||||||++|+++|+++|+ +|++++|+ .|.+++.++++ ++|+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-----------------------------~d~~~l~~~~~--~~d~ 49 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-----------------------------TKEEELESALL--KADF 49 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-----------------------------CCHHHHHHHHH--HCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-----------------------------CCHHHHHHHhc--cCCE
Confidence 6899999999999999999999998 77776442 56788888888 5999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
|||+||.... +++...+++|+.++.+++++|++.+++ +||++||..+|+ .+.|+.+|.++
T Consensus 50 Vih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~---------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 50 IVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ---------------DNPYGESKLQG 110 (369)
T ss_dssp EEECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS---------------CSHHHHHHHHH
T ss_pred EEECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC---------------CCCchHHHHHH
Confidence 9999997542 356778899999999999999999887 999999999985 57899999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|++++.++++. +++++++||+++|||... + ....+.. ++..+..+....+ + ++++.++++|+
T Consensus 111 E~~~~~~~~~~-g~~~~i~R~~~v~G~~~~-----~--~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~i~v 173 (369)
T 3st7_A 111 EQLLREYAEEY-GNTVYIYRWPNLFGKWCK-----P--NYNSVIATFCYKIARNEEIQV---N------DRNVELTLNYV 173 (369)
T ss_dssp HHHHHHHHHHH-CCCEEEEEECEEECTTCC-----T--TSSCHHHHHHHHHHTTCCCCC---S------CTTCEEEEEEH
T ss_pred HHHHHHHHHHh-CCCEEEEECCceeCCCCC-----C--CcchHHHHHHHHHHcCCCeEe---c------CCCeEEEEEEH
Confidence 99999998875 899999999999998421 1 1123444 5666666654322 2 57889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcc
Q 040584 240 VDLADGHIAALRKLDDPKVG-CEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKA 318 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~-~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p 318 (347)
+|+|+++..+++. +... +++||+++++.+|+.|+++.+++.+|.+.++...+. +. . ..-......++|.|
T Consensus 174 ~Dva~~~~~~l~~---~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~-~~-~----~~~~l~~~~l~~~p 244 (369)
T 3st7_A 174 DDIVAEIKRAIEG---TPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKL-DN-L----FEKDLYSTYLSYLP 244 (369)
T ss_dssp HHHHHHHHHHHHT---CCCEETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCT-TS-H----HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhC---CcccCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCC-CC-H----HHHHHHHHHhcccC
Confidence 9999999999987 2222 699999999999999999999999997644332111 11 1 11123334579999
Q ss_pred cccHHHHHHHHH
Q 040584 319 KYGIDEMCRDQW 330 (347)
Q Consensus 319 ~~~~~~~i~~~~ 330 (347)
..+++++++...
T Consensus 245 ~~~~~~~l~~~~ 256 (369)
T 3st7_A 245 STDFSYPLLMNV 256 (369)
T ss_dssp TTCSCCCCCEEE
T ss_pred Ccceeechhhcc
Confidence 887776654433
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=253.44 Aligned_cols=281 Identities=15% Similarity=0.160 Sum_probs=204.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||||||||||++|++.|++.|++|+++.|+........+.+..+. ..+++++.+|+.|.+++.+++++.++|+|
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~---~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE---DKGAIIVYGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH---HTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH---hCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence 689999999999999999999999999999998743332223222222 24789999999999999999996669999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
||+|+.. |+.++.+++++|++.+ +++||+ | +||. ..+|..+..|.+.|+.+|..+|
T Consensus 88 i~~a~~~---------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~~~~~p~~~y~~sK~~~e 144 (346)
T 3i6i_A 88 VSTVGGE---------------SILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRADPVEPGLNMYREKRRVR 144 (346)
T ss_dssp EECCCGG---------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTCCCCTTHHHHHHHHHHHH
T ss_pred EECCchh---------------hHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCccCcCCCcchHHHHHHHHH
Confidence 9999862 8889999999999999 999885 4 3553 2456667778889999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
+++++ .+++++++||+.+||..... +..... .......+.++| +++..++|+|++|
T Consensus 145 ~~l~~-----~g~~~tivrpg~~~g~~~~~-----------~~~~~~--~~~~~~~~~~~g------~g~~~~~~i~~~D 200 (346)
T 3i6i_A 145 QLVEE-----SGIPFTYICCNSIASWPYYN-----------NIHPSE--VLPPTDFFQIYG------DGNVKAYFVAGTD 200 (346)
T ss_dssp HHHHH-----TTCCBEEEECCEESSCCCSC-----------C-------CCCCSSCEEEET------TSCCCEEEECHHH
T ss_pred HHHHH-----cCCCEEEEEecccccccCcc-----------cccccc--ccCCCceEEEcc------CCCceEEecCHHH
Confidence 99876 38999999999999963111 111110 112223466667 7889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccC-CCcccHHHHHHHHHHHhCCCCCcccCCCCC--------CCchh----------
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGT-GKGTSVLEMVAAFEKASGKKIPLVKSGRRP--------GDAEI---------- 302 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------~~~~~---------- 302 (347)
+|+++..++.. +...+++|++++ ++.+|+.|+++.+.+.+|.+.++...+... ..+..
T Consensus 201 va~~~~~~l~~---~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 277 (346)
T 3i6i_A 201 IGKFTMKTVDD---VRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIF 277 (346)
T ss_dssp HHHHHHHHTTC---GGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---ccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHh
Confidence 99999999987 334568899975 588999999999999999887654432110 00000
Q ss_pred -----hccCh-----HHHHHh-cCCcccccHHHHHHHHHHHHhhCC
Q 040584 303 -----VYAST-----EKAERE-LNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 303 -----~~~d~-----~k~~~~-lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
..++. .++.+. -+++|+ +++|.++++++|+..+.
T Consensus 278 ~~g~~~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~ 322 (346)
T 3i6i_A 278 IKGCQVNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQ 322 (346)
T ss_dssp TTCTTTSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC-----
T ss_pred ccCCCcccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccc
Confidence 00111 123333 367777 99999999999998763
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=247.45 Aligned_cols=214 Identities=23% Similarity=0.291 Sum_probs=181.4
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+ |+|+||||+|+||++++++|+++|++|++++|+..+.. ..++.++.+|++|.+++.++++ ++
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~--~~ 65 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-------------GPNEECVQCDLADANAVNAMVA--GC 65 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-------------CTTEEEEECCTTCHHHHHHHHT--TC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-------------CCCCEEEEcCCCCHHHHHHHHc--CC
Confidence 54 68999999999999999999999999999999876542 3578999999999999999999 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC-CCCCCCCCCCCCCCCCchhhhHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW-PKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~-~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
|+||||||.. ..+.+...+++|+.++.++++++++.+.++||++||..+||. ....+++|+.+..+.+.|+.||.
T Consensus 66 D~vi~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~ 141 (267)
T 3rft_A 66 DGIVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKC 141 (267)
T ss_dssp SEEEECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHH
T ss_pred CEEEECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHH
Confidence 9999999973 334567889999999999999999999899999999999974 45567889999999999999999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
++|.+++.+++++ +++++++||+.|||+. + ++...++|++
T Consensus 142 ~~e~~~~~~a~~~-g~~~~~vr~~~v~~~~---------------------------------~------~~~~~~~~~~ 181 (267)
T 3rft_A 142 FGENLARMYFDKF-GQETALVRIGSCTPEP---------------------------------N------NYRMLSTWFS 181 (267)
T ss_dssp HHHHHHHHHHHHH-CCCEEEEEECBCSSSC---------------------------------C------STTHHHHBCC
T ss_pred HHHHHHHHHHHHh-CCeEEEEEeecccCCC---------------------------------C------CCCceeeEEc
Confidence 9999999998876 8999999999999851 0 2345567899
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHH
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEM 276 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~ 276 (347)
++|+++++..+++. +.....+++++++++.++.++
T Consensus 182 ~~d~a~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~ 216 (267)
T 3rft_A 182 HDDFVSLIEAVFRA---PVLGCPVVWGASANDAGWWDN 216 (267)
T ss_dssp HHHHHHHHHHHHHC---SCCCSCEEEECCCCTTCCBCC
T ss_pred HHHHHHHHHHHHhC---CCCCceEEEEeCCCCCCcccC
Confidence 99999999999987 334456788877776665444
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=242.70 Aligned_cols=258 Identities=15% Similarity=0.214 Sum_probs=188.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|+|||||||||||++++++|++. |++|+++.|++.+.... ...+++++.+|+.|.+++.++++ ++|+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~----------~~~~v~~~~~D~~d~~~l~~~~~--~~d~ 68 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD----------WRGKVSVRQLDYFNQESMVEAFK--GMDT 68 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG----------GBTTBEEEECCTTCHHHHHHHTT--TCSE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh----------hhCCCEEEEcCCCCHHHHHHHHh--CCCE
Confidence 57999999999999999999998 99999999987654211 13578999999999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+|+.... ...|+.++.+++++|++.+++|||++||... .. ..+. .+...+..+|
T Consensus 69 vi~~a~~~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~---~~------~~~~----~~~~~~~~~e 125 (289)
T 3e48_A 69 VVFIPSIIHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD---QH------NNPF----HMSPYFGYAS 125 (289)
T ss_dssp EEECCCCCCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC---ST------TCCS----TTHHHHHHHH
T ss_pred EEEeCCCCcc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC---CC------CCCC----ccchhHHHHH
Confidence 9999986431 1348999999999999999999999999432 11 1111 1222233455
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
..++. . +++++++||+.+||+ +..++........ ..++ .++..+++++++|
T Consensus 126 ~~~~~----~-g~~~~ilrp~~~~~~---------------~~~~~~~~~~~~~---~~~~------~g~~~~~~i~~~D 176 (289)
T 3e48_A 126 RLLST----S-GIDYTYVRMAMYMDP---------------LKPYLPELMNMHK---LIYP------AGDGRINYITRND 176 (289)
T ss_dssp HHHHH----H-CCEEEEEEECEESTT---------------HHHHHHHHHHHTE---ECCC------CTTCEEEEECHHH
T ss_pred HHHHH----c-CCCEEEEeccccccc---------------cHHHHHHHHHCCC---EecC------CCCceeeeEEHHH
Confidence 54443 2 899999999999986 3334444333221 1122 5788999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC--------C-CCCch-----------
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR--------R-PGDAE----------- 301 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--------~-~~~~~----------- 301 (347)
+|+++..++.. +...+++||++ ++.+|+.|+++.+.+.+|.+..+...+. . .....
T Consensus 177 va~~~~~~l~~---~~~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 252 (289)
T 3e48_A 177 IARGVIAIIKN---PDTWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGAR 252 (289)
T ss_dssp HHHHHHHHHHC---GGGTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC---CCcCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHC
Confidence 99999999987 23337899999 9999999999999999998765433221 0 11100
Q ss_pred -hhccChHHHHHhcCCcccccHHHHHHHH
Q 040584 302 -IVYASTEKAERELNWKAKYGIDEMCRDQ 329 (347)
Q Consensus 302 -~~~~d~~k~~~~lg~~p~~~~~~~i~~~ 329 (347)
....+++.+++.+|++|+ ++++.+++.
T Consensus 253 g~~~~~~~~~~~~~G~~p~-~~~~~~~~~ 280 (289)
T 3e48_A 253 GLLDQESNDFKQLVNDQPQ-TLQSFLQEN 280 (289)
T ss_dssp TTTCCCCSHHHHHHSSCCC-CHHHHHHC-
T ss_pred CCccccCchHHHHhCCCCC-CHHHHHHHH
Confidence 112456677888999999 888776543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=236.38 Aligned_cols=209 Identities=15% Similarity=0.181 Sum_probs=170.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~ 81 (347)
|+|+||||+||||++++++|+++|++|+++.|+..+... ..+++++.+|++| .+++.++++ ++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~------------~~~~~~~~~D~~d~~~~~~~~~~--~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ------------YNNVKAVHFDVDWTPEEMAKQLH--GMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC------------CTTEEEEECCTTSCHHHHHTTTT--TCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh------------cCCceEEEecccCCHHHHHHHHc--CCCE
Confidence 489999999999999999999999999999998765421 1478999999999 999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+||... ...+++|+.++.+++++|++.++++||++||.++++. .+.+| .+..+.+.|+.+|.++|
T Consensus 67 vi~~ag~~~--------~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~---~~~~e-~~~~~~~~Y~~sK~~~e 134 (219)
T 3dqp_A 67 IINVSGSGG--------KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQP---EKWIG-AGFDALKDYYIAKHFAD 134 (219)
T ss_dssp EEECCCCTT--------SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCG---GGCCS-HHHHHTHHHHHHHHHHH
T ss_pred EEECCcCCC--------CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCC---Ccccc-cccccccHHHHHHHHHH
Confidence 999999754 2367889999999999999999999999999887753 23344 44456789999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
.+++ +. .+++++++||+.+||+... + .+. .++..+++++++|
T Consensus 135 ~~~~---~~-~~i~~~ilrp~~v~g~~~~----------------------~---~~~---------~~~~~~~~i~~~D 176 (219)
T 3dqp_A 135 LYLT---KE-TNLDYTIIQPGALTEEEAT----------------------G---LID---------INDEVSASNTIGD 176 (219)
T ss_dssp HHHH---HS-CCCEEEEEEECSEECSCCC----------------------S---EEE---------ESSSCCCCEEHHH
T ss_pred HHHH---hc-cCCcEEEEeCceEecCCCC----------------------C---ccc---------cCCCcCCcccHHH
Confidence 9986 23 4899999999999997310 0 111 1245678999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHH
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAA 279 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~ 279 (347)
+|+++..++++ +...+++||+++++ .++.|+++.
T Consensus 177 va~~i~~~l~~---~~~~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 177 VADTIKELVMT---DHSIGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp HHHHHHHHHTC---GGGTTEEEEEEECS-EEHHHHHHT
T ss_pred HHHHHHHHHhC---ccccCcEEEeCCCC-ccHHHHHHH
Confidence 99999999987 33457999998775 999998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=234.09 Aligned_cols=214 Identities=17% Similarity=0.177 Sum_probs=170.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCe-EEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNM-TFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+|+||||||+||++++++|+++|++|++++|+..+...... .++ +++.+|++ +.+.+++. ++|
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~--~~~~~~~~--~~D 86 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----------RGASDIVVANLE--EDFSHAFA--SID 86 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----------TTCSEEEECCTT--SCCGGGGT--TCS
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----------CCCceEEEcccH--HHHHHHHc--CCC
Confidence 5899999999999999999999999999999998766543221 267 89999999 66777787 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+||... .+.+...+++|+.++.+++++|++.++++||++||...+.. +..+ .+.+.|+.+|.++
T Consensus 87 ~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~~~-~~~~~Y~~sK~~~ 154 (236)
T 3e8x_A 87 AVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQGP-MNMRHYLVAKRLA 154 (236)
T ss_dssp EEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GGSC-GGGHHHHHHHHHH
T ss_pred EEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CCCh-hhhhhHHHHHHHH
Confidence 9999999753 24567899999999999999999999999999999655421 1122 5667899999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|.+++ . .+++++++||+.+||+... + .+...+ .+...+++++++
T Consensus 155 e~~~~----~-~gi~~~~lrpg~v~~~~~~----------------------~---~~~~~~------~~~~~~~~i~~~ 198 (236)
T 3e8x_A 155 DDELK----R-SSLDYTIVRPGPLSNEEST----------------------G---KVTVSP------HFSEITRSITRH 198 (236)
T ss_dssp HHHHH----H-SSSEEEEEEECSEECSCCC----------------------S---EEEEES------SCSCCCCCEEHH
T ss_pred HHHHH----H-CCCCEEEEeCCcccCCCCC----------------------C---eEEecc------CCCcccCcEeHH
Confidence 99887 2 3899999999999997310 0 112112 344567899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHH
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFE 281 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~ 281 (347)
|+|+++..++++ +...+++||++++ ..++.|+++.++
T Consensus 199 Dva~~~~~~~~~---~~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 199 DVAKVIAELVDQ---QHTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp HHHHHHHHHTTC---GGGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred HHHHHHHHHhcC---ccccCCeEEEeCC-CcCHHHHHHHhc
Confidence 999999999987 3356799999887 599999998764
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=235.53 Aligned_cols=273 Identities=19% Similarity=0.152 Sum_probs=194.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+|+||||||+||++++++|+++| ++|+++.|++.+... ..+. ..+++++.+|+.|.+++.++++ ++|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~------~~~~~~~~~D~~d~~~l~~~~~--~~d 74 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELR------LQGAEVVQGDQDDQVIMELALN--GAY 74 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHH------HTTCEEEECCTTCHHHHHHHHT--TCS
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHH------HCCCEEEEecCCCHHHHHHHHh--cCC
Confidence 4799999999999999999999998 999999998765321 1121 1368899999999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+|||+|+.... ...+.|+.++.+++++|++.++++||++||..+|+... ..+...|+.+|.++
T Consensus 75 ~vi~~a~~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~---------~~~~~~y~~sK~~~ 137 (299)
T 2wm3_A 75 ATFIVTNYWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA---------GRLAAAHFDGKGEV 137 (299)
T ss_dssp EEEECCCHHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT---------TSCCCHHHHHHHHH
T ss_pred EEEEeCCCCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC---------CcccCchhhHHHHH
Confidence 99999985321 12356888999999999999999999998888875321 12346899999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
|.+++.. +++++++||+.+||+.... +.+. ....++...+. ++.++..++++|++
T Consensus 138 e~~~~~~-----gi~~~ilrp~~~~~~~~~~-----------~~~~--~~~~g~~~~~~-------~~~~~~~~~~i~~~ 192 (299)
T 2wm3_A 138 EEYFRDI-----GVPMTSVRLPCYFENLLSH-----------FLPQ--KAPDGKSYLLS-------LPTGDVPMDGMSVS 192 (299)
T ss_dssp HHHHHHH-----TCCEEEEECCEEGGGGGTT-----------TCCE--ECTTSSSEEEC-------CCCTTSCEEEECGG
T ss_pred HHHHHHC-----CCCEEEEeecHHhhhchhh-----------cCCc--ccCCCCEEEEE-------ecCCCCccceecHH
Confidence 9998752 8899999999999963110 0000 00112110111 12467789999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC-------CC--Cchh---h----c
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR-------PG--DAEI---V----Y 304 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------~~--~~~~---~----~ 304 (347)
|+|+++..++.+.. ...+++||+++ +.+|+.|+++.+.+.+|.+.++...+.. +. .... + .
T Consensus 193 Dva~~~~~~l~~~~--~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 269 (299)
T 2wm3_A 193 DLGPVVLSLLKMPE--KYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRP 269 (299)
T ss_dssp GHHHHHHHHHHSHH--HHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcChh--hhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 99999999997521 12468999975 6799999999999999987654332211 10 0000 0 0
Q ss_pred cChHHHHHhcCCcccccHHHHHHHHH
Q 040584 305 ASTEKAERELNWKAKYGIDEMCRDQW 330 (347)
Q Consensus 305 ~d~~k~~~~lg~~p~~~~~~~i~~~~ 330 (347)
.......+.+|-+|+ +|++.+++..
T Consensus 270 ~~~~~~~~~~g~~~~-~~~~~~~~~~ 294 (299)
T 2wm3_A 270 DRDIELTLRLNPKAL-TLDQWLEQHK 294 (299)
T ss_dssp CCCHHHHHHHCTTCC-CHHHHHHHHG
T ss_pred CCCHHHHHHhCCCCC-CHHHHHHhCh
Confidence 112234456787776 8888887654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=230.49 Aligned_cols=230 Identities=17% Similarity=0.187 Sum_probs=171.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|+|+|+||||+||||++++++|+++ |++|+++.|++.+.. .+ ..++.++.+|++|.+++.++++ +
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~-------~~----~~~~~~~~~D~~d~~~~~~~~~--~ 69 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE-------KI----GGEADVFIGDITDADSINPAFQ--G 69 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHH-------HT----TCCTTEEECCTTSHHHHHHHHT--T
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchh-------hc----CCCeeEEEecCCCHHHHHHHHc--C
Confidence 4689999999999999999999999 899999998743321 11 2467889999999999999998 6
Q ss_pred CcEEEEccccccCCc-------------cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVGE-------------SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 79 ~d~vih~a~~~~~~~-------------~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
+|+|||+||...... ..+.....+++|+.++.++++++++.++++||++||..++.. ..
T Consensus 70 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~--------~~ 141 (253)
T 1xq6_A 70 IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP--------DH 141 (253)
T ss_dssp CSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT--------TC
T ss_pred CCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCC--------CC
Confidence 999999999653210 112223467899999999999999999999999999987521 11
Q ss_pred CCCC--CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQA--MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~--~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+..+ .+.|+.+|.++|.+++. .+++++++||+.+||+.... .. +. .+....+ ++
T Consensus 142 ~~~~~~~~~y~~sK~~~e~~~~~-----~~i~~~~vrpg~v~~~~~~~--------~~-~~-------~~~~~~~--~~- 197 (253)
T 1xq6_A 142 PLNKLGNGNILVWKRKAEQYLAD-----SGTPYTIIRAGGLLDKEGGV--------RE-LL-------VGKDDEL--LQ- 197 (253)
T ss_dssp GGGGGGGCCHHHHHHHHHHHHHT-----SSSCEEEEEECEEECSCSSS--------SC-EE-------EESTTGG--GG-
T ss_pred ccccccchhHHHHHHHHHHHHHh-----CCCceEEEecceeecCCcch--------hh-hh-------ccCCcCC--cC-
Confidence 2111 13577799999998864 38999999999999984210 00 00 0111111 11
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC---cccHHHHHHHHHHHhCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK---GTSVLEMVAAFEKASGK 286 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~---~~s~~e~~~~i~~~~g~ 286 (347)
...++++++|+|++++.++++ +...+++||+++++ ++|+.|+++.+++.+|+
T Consensus 198 --------~~~~~~~~~Dva~~~~~~~~~---~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 198 --------TDTKTVPRADVAEVCIQALLF---EEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp --------SSCCEEEHHHHHHHHHHHTTC---GGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred --------CCCcEEcHHHHHHHHHHHHcC---ccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 124689999999999999876 23456899998864 59999999999998885
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=221.75 Aligned_cols=219 Identities=13% Similarity=0.146 Sum_probs=146.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+|||||||||++++++|+++|++|+++.|++.+... + ..+++++.+|++|.++ +++. ++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-------~----~~~~~~~~~D~~d~~~--~~~~--~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ-------T----HKDINILQKDIFDLTL--SDLS--DQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH-------H----CSSSEEEECCGGGCCH--HHHT--TCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh-------c----cCCCeEEeccccChhh--hhhc--CCCEE
Confidence 589999999999999999999999999999998654322 1 1478999999999887 6676 69999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccccc-CCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAY-GWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~y-g~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
||+||... ...+.|+.++.+++++|++.+++|+|++||..+| +.....+..|+.+..+.+.|+.+|..+|
T Consensus 66 i~~ag~~~---------~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e 136 (221)
T 3ew7_A 66 VDAYGISP---------DEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAK 136 (221)
T ss_dssp EECCCSST---------TTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHH
T ss_pred EECCcCCc---------cccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHH
Confidence 99999732 1246699999999999999888999999998765 4444445667777778889999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
.+. .+.....+++++++||+.+|||.+. . .. + ..+. ..+...+ .+ .++++++|
T Consensus 137 ~~~-~~~~~~~gi~~~ivrp~~v~g~~~~-----~----~~---~----~~~~-~~~~~~~------~~---~~~i~~~D 189 (221)
T 3ew7_A 137 QLE-HLKSHQAEFSWTYISPSAMFEPGER-----T----GD---Y----QIGK-DHLLFGS------DG---NSFISMED 189 (221)
T ss_dssp HHH-HHHTTTTTSCEEEEECSSCCCCC-----------------------------------------------CCCHHH
T ss_pred HHH-HHHhhccCccEEEEeCcceecCCCc-----c----Cc---e----Eecc-ccceecC------CC---CceEeHHH
Confidence 863 3332124899999999999997310 0 00 0 0111 1122212 12 36899999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
+|++++.++++ +...+++||+++..+.+.+|
T Consensus 190 va~~~~~~l~~---~~~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 190 YAIAVLDEIER---PNHLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp HHHHHHHHHHS---CSCTTSEEECCC--------
T ss_pred HHHHHHHHHhC---ccccCCEEEECCCCcccccc
Confidence 99999999998 45677999999988777655
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=221.33 Aligned_cols=217 Identities=13% Similarity=0.044 Sum_probs=159.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||||||||||++++++|+++|++|+++.|+..+.... ...+++++.+|++|.++ +++. ++|+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~~~D~~d~~~--~~~~--~~d~v 66 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR----------LGATVATLVKEPLVLTE--ADLD--SVDAV 66 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----------TCTTSEEEECCGGGCCH--HHHT--TCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc----------cCCCceEEecccccccH--hhcc--cCCEE
Confidence 5799999999999999999999999999999975543211 13578999999999887 6776 69999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC-CC--CCCCCCCCCCCCCchhhhHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP-KV--VPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~-~~--~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
||+||.... ....++|+.++.+++++|++.+ +|||++||+.++... .. .+.+|.....|.+.|+.+|..
T Consensus 67 i~~ag~~~~-------~~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~ 138 (224)
T 3h2s_A 67 VDALSVPWG-------SGRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQ 138 (224)
T ss_dssp EECCCCCTT-------SSCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHH
T ss_pred EECCccCCC-------cchhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHH
Confidence 999997521 1235779999999999999998 899999998665432 22 233444444557899999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
+|.+ ..+.++ .+++++++||+.+|||.+. . + +. .+.. .+. .+...++++++
T Consensus 139 ~e~~-~~~~~~-~~i~~~ivrp~~v~g~~~~-----~-~----~~-------~~~~-~~~---------~~~~~~~~i~~ 189 (224)
T 3h2s_A 139 YYEY-QFLQMN-ANVNWIGISPSEAFPSGPA-----T-S----YV-------AGKD-TLL---------VGEDGQSHITT 189 (224)
T ss_dssp HHHH-HHHTTC-TTSCEEEEEECSBCCCCCC-----C-C----EE-------EESS-BCC---------CCTTSCCBCCH
T ss_pred HHHH-HHHHhc-CCCcEEEEcCccccCCCcc-----c-C----ce-------eccc-ccc---------cCCCCCceEeH
Confidence 9954 445444 4899999999999997320 0 0 00 1110 111 23345689999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
+|+|++++.++++ +...+++|++++.+....
T Consensus 190 ~DvA~~~~~~l~~---~~~~g~~~~~~~~~~~~~ 220 (224)
T 3h2s_A 190 GNMALAILDQLEH---PTAIRDRIVVRDADLEHH 220 (224)
T ss_dssp HHHHHHHHHHHHS---CCCTTSEEEEEECC----
T ss_pred HHHHHHHHHHhcC---ccccCCEEEEecCcchhc
Confidence 9999999999998 456679999988765544
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=231.32 Aligned_cols=235 Identities=15% Similarity=0.127 Sum_probs=174.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecC-CCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD-LRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~~~~~~~~~~~d 80 (347)
+|+|+|||||||||++|+++|+++|++|+++.|+..... ...+.. ..+++++.+| ++|.+++.++++ ++|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~-----~~~v~~v~~D~l~d~~~l~~~~~--~~d 75 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA-----IPNVTLFQGPLLNNVPLMDTLFE--GAH 75 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT-----STTEEEEESCCTTCHHHHHHHHT--TCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh-----cCCcEEEECCccCCHHHHHHHHh--cCC
Confidence 478999999999999999999999999999999876542 111211 2368899999 999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEecccc--ccCCCCCCCCCCCCCCCCCCchhhhH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSAT--AYGWPKVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~--~yg~~~~~~~~e~~~~~~~~~Y~~sK 157 (347)
+|||+++... .+.|..+ .+++++|++.+ +++||++||.. .|+. .+.+.|+.+|
T Consensus 76 ~Vi~~a~~~~-----------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~------------~~~~~y~~sK 131 (352)
T 1xgk_A 76 LAFINTTSQA-----------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP------------WPAVPMWAPK 131 (352)
T ss_dssp EEEECCCSTT-----------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS------------CCCCTTTHHH
T ss_pred EEEEcCCCCC-----------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC------------CCCccHHHHH
Confidence 9999987421 1346766 99999999998 99999999985 3421 2346799999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHH--HcCCCCceEEecccCCCCCCceeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQV--AVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
.++|++++. . +++++++||+ +||+..... +.+++... ..+. ..+.+++ ++++.++
T Consensus 132 ~~~E~~~~~----~-gi~~~ivrpg-~~g~~~~~~----------~~~~~~~~~~~~g~-~~~~~~~------~~~~~~~ 188 (352)
T 1xgk_A 132 FTVENYVRQ----L-GLPSTFVYAG-IYNNNFTSL----------PYPLFQMELMPDGT-FEWHAPF------DPDIPLP 188 (352)
T ss_dssp HHHHHHHHT----S-SSCEEEEEEC-EEGGGCBSS----------SCSSCBEEECTTSC-EEEEESS------CTTSCEE
T ss_pred HHHHHHHHH----c-CCCEEEEecc-eecCCchhc----------ccccccccccCCCc-eEEeecc------CCCCcee
Confidence 999999875 2 8899999976 688742110 00111000 1121 1123344 5678899
Q ss_pred eeeH-HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCC
Q 040584 236 YIHV-VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG 294 (347)
Q Consensus 236 ~i~v-~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~ 294 (347)
++|+ +|+|+++..++.... ....+++||+++ +.+|+.|+++.+++.+|.+.++...|
T Consensus 189 ~i~v~~Dva~ai~~~l~~~~-~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp 246 (352)
T 1xgk_A 189 WLDAEHDVGPALLQIFKDGP-QKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 246 (352)
T ss_dssp EECHHHHHHHHHHHHHHHCH-HHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred eEecHHHHHHHHHHHHhCCc-hhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECC
Confidence 9999 899999999998710 012468999985 67999999999999999887655544
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=222.77 Aligned_cols=241 Identities=17% Similarity=0.205 Sum_probs=173.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+|+|+|||||||||+++++.|+++|++|+++.|+.... +...+.+..+. ..+++++.+|+.|.+++.++++ ++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~l~~~~~--~~d 78 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK---QLGAKLIEASLDDHQRLVDALK--QVD 78 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH---TTTCEEECCCSSCHHHHHHHHT--TCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH---hCCeEEEeCCCCCHHHHHHHHh--CCC
Confidence 47899999999999999999999999999999986432 11122222221 3478899999999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCCCCCCCCCCC-CCchhhhHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGRSKL 158 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~-~~~Y~~sK~ 158 (347)
+|||+|+.... ..|+.++.+++++|++.+ ++|||+ | +||.....+ +.+..| ...| .+|.
T Consensus 79 ~vi~~a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~---~~~~~p~~~~y-~sK~ 139 (313)
T 1qyd_A 79 VVISALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM---EHALQPGSITF-IDKR 139 (313)
T ss_dssp EEEECCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC---CCCCSSTTHHH-HHHH
T ss_pred EEEECCccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc---ccCCCCCcchH-HHHH
Confidence 99999986432 127888999999999998 999985 3 455322211 122233 4568 9999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
++|++++. .+++++++||+.++|+..... ..... ........+.+++ +++..++++|
T Consensus 140 ~~e~~~~~-----~g~~~~ilrp~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~------~g~~~~~~i~ 196 (313)
T 1qyd_A 140 KVRRAIEA-----ASIPYTYVSSNMFAGYFAGSL-----------AQLDG-HMMPPRDKVLIYG------DGNVKGIWVD 196 (313)
T ss_dssp HHHHHHHH-----TTCCBCEEECCEEHHHHTTTS-----------SCTTC-CSSCCSSEECCBT------TSCSEEEEEC
T ss_pred HHHHHHHh-----cCCCeEEEEeceecccccccc-----------ccccc-cccCCCCeEEEeC------CCCceEEEEE
Confidence 99998864 288999999998887421100 00000 0000111233444 6788999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCC-CcccHHHHHHHHHHHhCCCCCccc
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTG-KGTSVLEMVAAFEKASGKKIPLVK 292 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~-~~~s~~e~~~~i~~~~g~~~~~~~ 292 (347)
++|+|+++..++.+ +...+++|+++++ +.+|+.|+++.+.+.+|.+.++..
T Consensus 197 ~~Dva~~~~~~l~~---~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~ 248 (313)
T 1qyd_A 197 EDDVGTYTIKSIDD---PQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIY 248 (313)
T ss_dssp HHHHHHHHHHHTTC---GGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECC
T ss_pred HHHHHHHHHHHHhC---cccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEE
Confidence 99999999999876 2334677887664 789999999999999998765443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=220.72 Aligned_cols=230 Identities=20% Similarity=0.249 Sum_probs=170.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+++|+||||||+||++++++|+++|++|+++.|+........+.+. ..+++++.+|+.|.+++.++++ ++|
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~------~~~v~~v~~Dl~d~~~l~~a~~--~~d 81 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQ------SLGAIIVKGELDEHEKLVELMK--KVD 81 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHH------HTTCEEEECCTTCHHHHHHHHT--TCS
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhh------cCCCEEEEecCCCHHHHHHHHc--CCC
Confidence 45689999999999999999999999999999998752222222221 1368899999999999999998 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCCCCCCCCCCC-CCchhhhHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGRSKL 158 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~-~~~Y~~sK~ 158 (347)
+|||+|+... +.++.+++++|++.+ +++||+ | +||.. .+|..+..| ...| .+|.
T Consensus 82 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~~~~~~~p~~~~y-~sK~ 137 (318)
T 2r6j_A 82 VVISALAFPQ---------------ILDQFKILEAIKVAGNIKRFLP-S---DFGVE----EDRINALPPFEALI-ERKR 137 (318)
T ss_dssp EEEECCCGGG---------------STTHHHHHHHHHHHCCCCEEEC-S---CCSSC----TTTCCCCHHHHHHH-HHHH
T ss_pred EEEECCchhh---------------hHHHHHHHHHHHhcCCCCEEEe-e---ccccC----cccccCCCCcchhH-HHHH
Confidence 9999998531 456789999999998 999984 3 35532 122223233 3468 9999
Q ss_pred HHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 159 FIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
.+|.+++. .+++++++||+.+++. +.+.+.... -....+.+++ +++..+++++
T Consensus 138 ~~e~~~~~-----~~~~~~~lr~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~------~~~~~~~~i~ 190 (318)
T 2r6j_A 138 MIRRAIEE-----ANIPYTYVSANCFASY---------------FINYLLRPY-DPKDEITVYG------TGEAKFAMNY 190 (318)
T ss_dssp HHHHHHHH-----TTCCBEEEECCEEHHH---------------HHHHHHCTT-CCCSEEEEET------TSCCEEEEEC
T ss_pred HHHHHHHh-----cCCCeEEEEcceehhh---------------hhhhhcccc-CCCCceEEec------CCCceeeEee
Confidence 99998864 2889999999877753 222211110 1122445555 6788999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccC-CCcccHHHHHHHHHHHhCCCCCccc
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGT-GKGTSVLEMVAAFEKASGKKIPLVK 292 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~-~~~~s~~e~~~~i~~~~g~~~~~~~ 292 (347)
++|+++++..++.+ +...+++|++++ ++.+|+.|+++.+.+.+|.+.++..
T Consensus 191 ~~Dva~~~~~~l~~---~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~ 242 (318)
T 2r6j_A 191 EQDIGLYTIKVATD---PRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIH 242 (318)
T ss_dssp HHHHHHHHHHHTTC---GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHhcC---ccccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceee
Confidence 99999999999876 233467888765 5789999999999999998866443
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=220.10 Aligned_cols=234 Identities=18% Similarity=0.205 Sum_probs=171.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|||+|+||||||+||++++++|+++|++|++++|+. ... ....+.+..+. ..+++++.+|+.|.+++.++++ +
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~---~~~v~~v~~D~~d~~~l~~a~~--~ 77 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR---SMGVTIIEGEMEEHEKMVSVLK--Q 77 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH---HTTCEEEECCTTCHHHHHHHHT--T
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh---cCCcEEEEecCCCHHHHHHHHc--C
Confidence 578999999999999999999999999999999986 211 11111222111 2478899999999999999999 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCCCCCCCCCCC-CCchhhh
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGRS 156 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~-~~~Y~~s 156 (347)
+|+|||+|+... +.++.+++++|++.+ ++|||+ | +||... +|..+..| .+.| .+
T Consensus 78 ~d~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~~~~~p~~~~y-~s 133 (321)
T 3c1o_A 78 VDIVISALPFPM---------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCEE----DRIKPLPPFESVL-EK 133 (321)
T ss_dssp CSEEEECCCGGG---------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSCG----GGCCCCHHHHHHH-HH
T ss_pred CCEEEECCCccc---------------hhhHHHHHHHHHHhCCccEEec-c---ccccCc----cccccCCCcchHH-HH
Confidence 999999998532 556789999999998 999982 3 354321 22223233 4579 99
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHH--HcCCCCceEEecccCCCCCCceee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQV--AVGRRPALTVFGTDYSTKDGTVVR 234 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~ 234 (347)
|..+|.+++.. +++++++||+.++++ +.+.+... ..-....+.+++ +++..+
T Consensus 134 K~~~e~~~~~~-----~~~~~~lrp~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 187 (321)
T 3c1o_A 134 KRIIRRAIEAA-----ALPYTYVSANCFGAY---------------FVNYLLHPSPHPNRNDDIVIYG------TGETKF 187 (321)
T ss_dssp HHHHHHHHHHH-----TCCBEEEECCEEHHH---------------HHHHHHCCCSSCCTTSCEEEET------TSCCEE
T ss_pred HHHHHHHHHHc-----CCCeEEEEeceeccc---------------cccccccccccccccCceEEec------CCCcce
Confidence 99999988742 789999999888764 22211110 001112345555 678899
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC-CCcccHHHHHHHHHHHhCCCCCccc
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGT-GKGTSVLEMVAAFEKASGKKIPLVK 292 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~-~~~~s~~e~~~~i~~~~g~~~~~~~ 292 (347)
++++++|+|+++..++.. +...+++|++++ ++.+|+.|+++.+.+.+|.+.++..
T Consensus 188 ~~i~~~Dva~~~~~~l~~---~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~ 243 (321)
T 3c1o_A 188 VLNYEEDIAKYTIKVACD---PRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVH 243 (321)
T ss_dssp EEECHHHHHHHHHHHHHC---GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEE
T ss_pred eEeeHHHHHHHHHHHHhC---ccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeee
Confidence 999999999999999986 234568888875 5789999999999999998866543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=217.95 Aligned_cols=248 Identities=17% Similarity=0.097 Sum_probs=176.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+. ...++.++.+|++|.+++.++++..
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA-------YPDRAEAISLDVTDGERIDVVAADVLARY 77 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-------ccCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999987765543332 1357889999999999999888643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHH----HHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTIT----LLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~----l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+++...+++|+.++.+ +++.+++.+.++||++||...+. +..
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~ 146 (281)
T 3m1a_A 78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL-----------SFA 146 (281)
T ss_dssp SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------CCT
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC-----------CCC
Confidence 6999999999754322 234456688999999554 45555666778999999988762 445
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.||.++|.+++.++.+. .++++++++||.+.+|...............+......... +.
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------- 214 (281)
T 3m1a_A 147 GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQ-----LV------- 214 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHH-----HH-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHH-----HH-------
Confidence 67899999999999999988773 38999999999998864221110000001111111111000 00
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASG 285 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g 285 (347)
......++.+++|+|++++++++.. ..+..|+++++....+.+.+..+.+.++
T Consensus 215 --~~~~~~~~~~~~dva~a~~~~~~~~----~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 215 --QGSDGSQPGDPAKAAAAIRLALDTE----KTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp --HC-----CBCHHHHHHHHHHHHHSS----SCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred --hhccCCCCCCHHHHHHHHHHHHhCC----CCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 1122345788999999999999872 3347899988877777887777776655
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=219.42 Aligned_cols=206 Identities=15% Similarity=0.091 Sum_probs=159.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|+|+|+||||+|+||++++++|+++|+ +|++++|++... ..++.++.+|+.|.+++.+++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~--------------~~~~~~~~~D~~~~~~~~~~~---- 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE--------------HPRLDNPVGPLAELLPQLDGS---- 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC--------------CTTEECCBSCHHHHGGGCCSC----
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCccc--------------CCCceEEeccccCHHHHHHhh----
Confidence 458999999999999999999999998 999999876541 246788889998887766655
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHH
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKL 158 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~ 158 (347)
+|+|||+||.... ....+...+++|+.++.+++++|++.++++||++||..+|+. +.+.|+.+|.
T Consensus 66 ~d~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~-------------~~~~y~~sK~ 130 (215)
T 2a35_A 66 IDTAFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK-------------SSIFYNRVKG 130 (215)
T ss_dssp CSEEEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHH
T ss_pred hcEEEECeeeccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC-------------CccHHHHHHH
Confidence 8999999996532 234567789999999999999999999999999999998742 3568999999
Q ss_pred HHHHHHHHHhhhcCCce-EEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 159 FIEEICRDVHRSDSEWK-IILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 159 ~~e~~~~~~~~~~~~~~-~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
++|.+++. .+++ ++++||+.+|||... ..+.. .+. +.. .++ + ++ .++++
T Consensus 131 ~~e~~~~~-----~~~~~~~~vrp~~v~g~~~~----------~~~~~---~~~-~~~--~~~-~------~~--~~~~i 180 (215)
T 2a35_A 131 ELEQALQE-----QGWPQLTIARPSLLFGPREE----------FRLAE---ILA-API--ARI-L------PG--KYHGI 180 (215)
T ss_dssp HHHHHHTT-----SCCSEEEEEECCSEESTTSC----------EEGGG---GTT-CCC--C-----------C--HHHHH
T ss_pred HHHHHHHH-----cCCCeEEEEeCceeeCCCCc----------chHHH---HHH-Hhh--hhc-c------CC--CcCcE
Confidence 99998874 2788 999999999998421 01111 111 111 111 1 22 67899
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHH
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVL 274 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~ 274 (347)
|++|+|+++..++++ + .+++||+++++..++.
T Consensus 181 ~~~Dva~~~~~~~~~---~--~~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 181 EACDLARALWRLALE---E--GKGVRFVESDELRKLG 212 (215)
T ss_dssp HHHHHHHHHHHHHTC---C--CSEEEEEEHHHHHHHH
T ss_pred eHHHHHHHHHHHHhc---C--CCCceEEcHHHHHHhh
Confidence 999999999999987 2 2689999887665543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=204.29 Aligned_cols=204 Identities=22% Similarity=0.222 Sum_probs=156.3
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+ |+|+||||+|+||++++++|+++|++|++++|++.+.... ...++.++.+|+.|.+++.++++ ++
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~--~~ 68 (206)
T 1hdo_A 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE----------GPRPAHVVVGDVLQAADVDKTVA--GQ 68 (206)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS----------SCCCSEEEESCTTSHHHHHHHHT--TC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc----------cCCceEEEEecCCCHHHHHHHHc--CC
Confidence 55 8999999999999999999999999999999976543210 13478899999999999999998 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||+||.... .. ..++|+.++.++++++++.++++||++||..+|+.....+ .+...|+.+|.+
T Consensus 69 d~vi~~a~~~~~----~~---~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-------~~~~~y~~~K~~ 134 (206)
T 1hdo_A 69 DAVIVLLGTRND----LS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP-------PRLQAVTDDHIR 134 (206)
T ss_dssp SEEEECCCCTTC----CS---CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSC-------GGGHHHHHHHHH
T ss_pred CEEEECccCCCC----CC---ccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccccc-------ccchhHHHHHHH
Confidence 999999996542 11 2358999999999999999999999999999987533211 156789999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
+|.+++. .+++++++||+.+ ++.+. . + .+. ..+.+ .+. .+++++
T Consensus 135 ~e~~~~~-----~~i~~~~lrp~~~-~~~~~-----~-~---~~~-------------~~~~~------~~~--~~~i~~ 178 (206)
T 1hdo_A 135 MHKVLRE-----SGLKYVAVMPPHI-GDQPL-----T-G---AYT-------------VTLDG------RGP--SRVISK 178 (206)
T ss_dssp HHHHHHH-----TCSEEEEECCSEE-ECCCC-----C-S---CCE-------------EESSS------CSS--CSEEEH
T ss_pred HHHHHHh-----CCCCEEEEeCCcc-cCCCC-----C-c---ceE-------------ecccC------CCC--CCccCH
Confidence 9998853 3899999999997 43210 0 0 000 00000 011 479999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+|+|+++..++++ +...+++||+++++
T Consensus 179 ~Dva~~~~~~~~~---~~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 179 HDLGHFMLRCLTT---DEYDGHSTYPSHQY 205 (206)
T ss_dssp HHHHHHHHHTTSC---STTTTCEEEEECCC
T ss_pred HHHHHHHHHHhcC---ccccccceeeeccc
Confidence 9999999999987 34567999998774
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=216.54 Aligned_cols=236 Identities=19% Similarity=0.242 Sum_probs=170.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-ch-hH-HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NA-SE-IAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+||+|+||||||+||++++++|+++|++|+++.|+. .. .. ...+.+..+. ..+++++.+|+.|.+++.++++
T Consensus 1 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~---~~~v~~v~~D~~d~~~l~~~~~-- 75 (307)
T 2gas_A 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQ---SLGVILLEGDINDHETLVKAIK-- 75 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHH---HTTCEEEECCTTCHHHHHHHHT--
T ss_pred CCcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHH---hCCCEEEEeCCCCHHHHHHHHh--
Confidence 468999999999999999999999999999999986 11 00 1111122211 2368899999999999999998
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCCCCCCCCCCC-CCchhh
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGR 155 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~-~~~Y~~ 155 (347)
++|+|||+|+... +.++.+++++|++.+ ++|||+ | +||... ++..+..| .+.| .
T Consensus 76 ~~d~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~~~~~p~~~~y-~ 131 (307)
T 2gas_A 76 QVDIVICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV----DRHDAVEPVRQVF-E 131 (307)
T ss_dssp TCSEEEECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSCCCCTTHHHHH-H
T ss_pred CCCEEEECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccCc----ccccCCCcchhHH-H
Confidence 6999999998532 456789999999998 999983 3 355321 22233333 4578 9
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 156 SKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
+|..+|.+++.. +++++++||+.++++.... +..... .......+.++| +++..++
T Consensus 132 sK~~~e~~~~~~-----~i~~~~lrp~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~------~~~~~~~ 187 (307)
T 2gas_A 132 EKASIRRVIEAE-----GVPYTYLCCHAFTGYFLRN-----------LAQLDA--TDPPRDKVVILG------DGNVKGA 187 (307)
T ss_dssp HHHHHHHHHHHH-----TCCBEEEECCEETTTTGGG-----------TTCTTC--SSCCSSEEEEET------TSCSEEE
T ss_pred HHHHHHHHHHHc-----CCCeEEEEcceeecccccc-----------cccccc--ccCCCCeEEEec------CCCcceE
Confidence 999999988642 7899999999988752100 000000 000112345555 6788999
Q ss_pred eeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC-CCcccHHHHHHHHHHHhCCCCCccc
Q 040584 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGT-GKGTSVLEMVAAFEKASGKKIPLVK 292 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~-~~~~s~~e~~~~i~~~~g~~~~~~~ 292 (347)
+++++|+|+++..++.. +...+++|++.+ ++.+|+.|+++.+.+.+|.+.++..
T Consensus 188 ~i~~~Dva~~~~~~l~~---~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~ 242 (307)
T 2gas_A 188 YVTEADVGTFTIRAAND---PNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTY 242 (307)
T ss_dssp EECHHHHHHHHHHHHTC---GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEE
T ss_pred EeeHHHHHHHHHHHHcC---ccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceee
Confidence 99999999999999976 233467788765 4689999999999999998876543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=219.38 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=171.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh--HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS--EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||+|+|||||||||+++++.|+++|++|+++.|+.... ....+.+..+. ..+++++.+|+.|.+++.++++ ++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~---~~~v~~v~~D~~d~~~l~~~~~--~~ 78 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK---ASGANIVHGSIDDHASLVEAVK--NV 78 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH---TTTCEEECCCTTCHHHHHHHHH--TC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH---hCCCEEEEeccCCHHHHHHHHc--CC
Confidence 47899999999999999999999999999999986532 22222222221 3478999999999999999999 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCCCCCCCCCCC-CCchhhhH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQA-MNPYGRSK 157 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~-~~~Y~~sK 157 (347)
|+|||+|+... +.++.+++++|++.+ ++|||+ |+ ||.. .+|..+..| ...| .+|
T Consensus 79 d~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~----~~~~~~~~p~~~~y-~sK 134 (308)
T 1qyc_A 79 DVVISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP-SE---FGND----VDNVHAVEPAKSVF-EVK 134 (308)
T ss_dssp SEEEECCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC-SC---CSSC----TTSCCCCTTHHHHH-HHH
T ss_pred CEEEECCcchh---------------hhhHHHHHHHHHhcCCCceEee-cc---cccC----ccccccCCcchhHH-HHH
Confidence 99999998531 455678999999998 999984 43 5422 122233334 3568 999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
..+|.+++.. +++++++||+.++|+..... ...... ......+.++| +++..++++
T Consensus 135 ~~~e~~~~~~-----~~~~~~~r~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~~~------~~~~~~~~i 190 (308)
T 1qyc_A 135 AKVRRAIEAE-----GIPYTYVSSNCFAGYFLRSL-----------AQAGLT--APPRDKVVILG------DGNARVVFV 190 (308)
T ss_dssp HHHHHHHHHH-----TCCBEEEECCEEHHHHTTTT-----------TCTTCS--SCCSSEEEEET------TSCCEEEEE
T ss_pred HHHHHHHHhc-----CCCeEEEEeceecccccccc-----------cccccc--CCCCCceEEec------CCCceEEEe
Confidence 9999988752 78999999999887521100 000000 00112345555 678899999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccC-CCcccHHHHHHHHHHHhCCCCCccc
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGT-GKGTSVLEMVAAFEKASGKKIPLVK 292 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~-~~~~s~~e~~~~i~~~~g~~~~~~~ 292 (347)
|++|+++++..++.+ +...+++|++++ ++.+|+.|+++.+.+.+|.+.++..
T Consensus 191 ~~~Dva~~~~~~l~~---~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~ 243 (308)
T 1qyc_A 191 KEEDIGTFTIKAVDD---PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAY 243 (308)
T ss_dssp CHHHHHHHHHTTSSC---GGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEE
T ss_pred cHHHHHHHHHHHHhC---ccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEe
Confidence 999999999988875 233468888865 4789999999999999998876543
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=213.55 Aligned_cols=245 Identities=15% Similarity=0.135 Sum_probs=179.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+........+.+ . ...++.++.+|++|.+++.++++..
T Consensus 16 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 16 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI----G-SPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----C-CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHh----C-CCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998755433332222 1 1236889999999999999888632
Q ss_pred -CCcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||..... ...+.+...+++|+.++.++++++... +.++||++||..+|...
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 160 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG---------- 160 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC----------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC----------
Confidence 699999999965321 122345668999999999999887753 56799999999887421
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
..+...|+.+|.+.|.+++.++.+. .+++++++|||.++++..... ...............
T Consensus 161 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~~---------- 223 (278)
T 2bgk_A 161 EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDV-------FGVDSSRVEELAHQA---------- 223 (278)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTS-------SSCCHHHHHHHHHHT----------
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhh-------cccchhHHHHhhhcc----------
Confidence 1145689999999999999887763 389999999999999742111 000112222222211
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHh
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKAS 284 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~ 284 (347)
+.....+++++|+|+++++++.... ....+++|++.++..+++.|+++.+.+.+
T Consensus 224 -----~~~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 224 -----ANLKGTLLRAEDVADAVAYLAGDES-KYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp -----CSSCSCCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred -----cccccccCCHHHHHHHHHHHcCccc-ccCCCCEEEECCcccccCCccchhhhhhc
Confidence 1112347899999999999986522 23568999999999999999999876543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-28 Score=208.94 Aligned_cols=229 Identities=15% Similarity=0.157 Sum_probs=171.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999866554444444332 347888999999999999887632
Q ss_pred -CCcEEEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +..+
T Consensus 87 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~ 155 (255)
T 1fmc_A 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-----------KNIN 155 (255)
T ss_dssp SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------CCTT
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC-----------CCCC
Confidence 5999999999754322 233456788999999999988775 44677999999998873 3345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.+|.+.|.+++.++.+. .+++++++|||.++++... ..+.+ +......+.
T Consensus 156 ~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~----------~~~~~~~~~~~~~~~------------ 213 (255)
T 1fmc_A 156 MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK----------SVITPEIEQKMLQHT------------ 213 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH----------TTCCHHHHHHHHHTC------------
T ss_pred CcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhh----------hccChHHHHHHHhcC------------
Confidence 6789999999999999887764 4899999999999986210 00112 223333221
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
....+++++|+|+++.+++.... ....+++|+++++...|+
T Consensus 214 -----~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 214 -----PIRRLGQPQDIANAALFLCSPAA-SWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp -----SSCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTSCCCC
T ss_pred -----CcccCCCHHHHHHHHHHHhCCcc-ccCCCcEEEECCceeccC
Confidence 11247799999999999986521 224678999999887764
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=212.31 Aligned_cols=228 Identities=15% Similarity=0.022 Sum_probs=164.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--CC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--KF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~ 79 (347)
||+|+||||+||||++++++|+++|++|++++|+..... . .+.+|++|.+++.++++.. ++
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------------~--~~~~D~~~~~~~~~~~~~~~~~~ 63 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE---------------A--DLSTPGGRETAVAAVLDRCGGVL 63 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE---------------C--CTTSHHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc---------------c--cccCCcccHHHHHHHHHHcCCCc
Confidence 478999999999999999999999999999999765431 0 1568999999999888733 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCC-C-------CCCC--
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVP-C-------TEEF-- 145 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~-~-------~e~~-- 145 (347)
|+||||||.... ...+...+++|+.++.++++++... +.++||++||..+|+.....+ . +|+.
T Consensus 64 d~vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (255)
T 2dkn_A 64 DGLVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAI 140 (255)
T ss_dssp SEEEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHH
T ss_pred cEEEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhh
Confidence 999999997541 3456789999999999999987654 567999999999986431110 0 0110
Q ss_pred -----CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc-
Q 040584 146 -----PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA- 217 (347)
Q Consensus 146 -----~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (347)
+..+.+.|+.+|.++|.+++.++++. .+++++++||+.++||. ....+. ......
T Consensus 141 ~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~--------------~~~~~~---~~~~~~~ 203 (255)
T 2dkn_A 141 ELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPL--------------LQASKA---DPRYGES 203 (255)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHH--------------HHHHHH---CTTTHHH
T ss_pred hhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchh--------------hhhccc---chhhHHH
Confidence 01355789999999999999887662 48999999999999862 011101 000000
Q ss_pred eEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 218 LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 218 ~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
...+ .+ ..+++++++|+|++++.++.... ....++.|+++++..++++|
T Consensus 204 ~~~~-------~~-~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 204 TRRF-------VA-PLGRGSEPREVAEAIAFLLGPQA-SFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp HHSC-------CC-TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTHHHHHCT
T ss_pred HHHH-------HH-HhcCCCCHHHHHHHHHHHhCCCc-ccceeeEEEecCCeEeeeec
Confidence 0000 01 33468999999999999998621 13567899999988777654
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=213.50 Aligned_cols=249 Identities=19% Similarity=0.189 Sum_probs=183.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+..... ...++.++.+|++|.+++.++++..
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (281)
T 3svt_A 11 DRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA-NGGAIRYEPTDITNEDETARAVDAVTAWH 89 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC-SSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999987766655555543311 1236888999999999999888643
Q ss_pred -CCcEEEEcccccc-CC----ccccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKA-VG----ESVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||... .. .+.+.+...+++|+.++.++++++... +.++||++||...+. +.
T Consensus 90 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 158 (281)
T 3svt_A 90 GRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN-----------TH 158 (281)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-----------CC
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC-----------CC
Confidence 6899999999632 21 133445678999999999998876543 445999999988763 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+++.++.++ .++++.+++||.+.++..... ..............
T Consensus 159 ~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--------~~~~~~~~~~~~~~----------- 219 (281)
T 3svt_A 159 RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAI--------TESAELSSDYAMCT----------- 219 (281)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH--------HTCHHHHHHHHHHC-----------
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhc--------ccCHHHHHHHHhcC-----------
Confidence 456789999999999999988775 369999999999988620000 00001112222111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc-HHHHHHHHHHHhCCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS-VLEMVAAFEKASGKKI 288 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s-~~e~~~~i~~~~g~~~ 288 (347)
....+.+++|+|+++.+++.... ....+++|++.+|..++ ..++++.+.+.+|.+.
T Consensus 220 ------p~~r~~~~~dva~~~~~l~s~~~-~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 220 ------PLPRQGEVEDVANMAMFLLSDAA-SFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp ------SSSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred ------CCCCCCCHHHHHHHHHHHhCccc-CCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 11236789999999999987622 24578999999888777 7788888888888654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=206.82 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=154.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|+|+||||+|+||++++++|+++|+ +|++++|++....... ..++.++.+|++|.+++.++++ ++
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~--~~ 85 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA----------YKNVNQEVVDFEKLDDYASAFQ--GH 85 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG----------GGGCEEEECCGGGGGGGGGGGS--SC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc----------cCCceEEecCcCCHHHHHHHhc--CC
Confidence 47899999999999999999999999 9999999876432110 1257889999999999999998 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+||||||..... ..+...+++|+.++.++++++++.++++||++||..+|+. +.+.|+.+|.+
T Consensus 86 d~vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-------------~~~~Y~~sK~~ 149 (242)
T 2bka_A 86 DVGFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-------------SNFLYLQVKGE 149 (242)
T ss_dssp SEEEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-------------CSSHHHHHHHH
T ss_pred CEEEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC-------------CcchHHHHHHH
Confidence 9999999964321 2346788999999999999999988899999999998752 34689999999
Q ss_pred HHHHHHHHhhhcCCc-eEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 160 IEEICRDVHRSDSEW-KIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~-~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
+|.+++.+ ++ +++++||+.+|||.. . ......+.....+..+. ......+++
T Consensus 150 ~e~~~~~~-----~~~~~~~vrpg~v~~~~~-----~-----~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 202 (242)
T 2bka_A 150 VEAKVEEL-----KFDRYSVFRPGVLLCDRQ-----E-----SRPGEWLVRKFFGSLPD------------SWASGHSVP 202 (242)
T ss_dssp HHHHHHTT-----CCSEEEEEECCEEECTTG-----G-----GSHHHHHHHHHHCSCCT------------TGGGGTEEE
T ss_pred HHHHHHhc-----CCCCeEEEcCceecCCCC-----C-----CcHHHHHHHHhhcccCc------------cccCCcccC
Confidence 99998753 66 699999999999831 0 11222222222221110 001124899
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
++|+|++++.++.+ ...++.+++.
T Consensus 203 ~~dva~~~~~~~~~----~~~~~~~~~~ 226 (242)
T 2bka_A 203 VVTVVRAMLNNVVR----PRDKQMELLE 226 (242)
T ss_dssp HHHHHHHHHHHHTS----CCCSSEEEEE
T ss_pred HHHHHHHHHHHHhC----ccccCeeEee
Confidence 99999999999987 2233556553
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=199.43 Aligned_cols=224 Identities=17% Similarity=0.123 Sum_probs=164.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+. ..+++++.+|++|.+++.++++.. ++|
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~id 78 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE--------CPGIEPVCVDLGDWDATEKALGGIGPVD 78 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--------ccCCCcEEecCCCHHHHHHHHHHcCCCC
Confidence 37899999999999999999999999999999875443322221 135677899999999999999754 489
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
+|||+||...... ..+.+...+++|+.++.++++++... + .++||++||...|. +..+..
T Consensus 79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~~ 147 (244)
T 1cyd_A 79 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV-----------TFPNLI 147 (244)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------CCTTBH
T ss_pred EEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC-----------CCCCcc
Confidence 9999999654322 23345668899999999998876653 4 57999999998874 233456
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.+|.+.|.+++.++.+. .+++++++||+.++++.... . .....++.++..+.
T Consensus 148 ~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~-----~---~~~~~~~~~~~~~~--------------- 204 (244)
T 1cyd_A 148 TYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKK-----V---SADPEFARKLKERH--------------- 204 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHH-----H---TCCHHHHHHHHHHS---------------
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccc-----c---ccCHHHHHHHHhcC---------------
Confidence 89999999999999888773 37999999999999862100 0 00111223322211
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
..+++++++|+|+++++++.... ....++.+++.+|..
T Consensus 205 --~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 205 --PLRKFAEVEDVVNSILFLLSDRS-ASTSGGGILVDAGYL 242 (244)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGGG-TTCCSSEEEESTTGG
T ss_pred --CccCCCCHHHHHHHHHHHhCchh-hcccCCEEEECCCcc
Confidence 12468999999999999997622 235678899987754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=207.45 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=169.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+........+.+ ..++.++.+|++|.+++.++++..
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-------GPAAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999998766554433332 346789999999999998887643
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++... + .++||++||...+. +..
T Consensus 82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 150 (259)
T 4e6p_A 82 GLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR-----------GEA 150 (259)
T ss_dssp SCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------CCT
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc-----------CCC
Confidence 6999999999765433 23455668889999999998876543 2 45999999988762 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCC-CceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR-PALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~ 225 (347)
....|+.||.+.+.+++.++.++ .++++.+++||.+++|.. ..+...+........ .....++
T Consensus 151 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--- 216 (259)
T 4e6p_A 151 LVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHW-----------DGVDALFARYENRPRGEKKRLVG--- 216 (259)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTH-----------HHHHHHHHHHHTCCTTHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchh-----------hhhhhhhhhhccCChHHHHHHHh---
Confidence 56789999999999999988764 379999999999998720 011111111111110 0011111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+.+.+++|+|+++++++.... ....|++|++.+|..+|
T Consensus 217 ---~~~p~~r~~~~~dva~~v~~L~s~~~-~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 217 ---EAVPFGRMGTAEDLTGMAIFLASAES-DYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp ---HHSTTSSCBCTHHHHHHHHHTTSGGG-TTCCSCEEEESTTSSCC
T ss_pred ---ccCCCCCCcCHHHHHHHHHHHhCCcc-CCCCCCEEEECcChhcC
Confidence 12234568899999999998886522 34568999999887654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=198.78 Aligned_cols=225 Identities=16% Similarity=0.133 Sum_probs=168.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+|+++||||+|+||++++++|+++|++|+++.|.. ...+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK----GVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999887754 3333334444332 457889999999999999888643
Q ss_pred ---CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||...... +.+++...+++|+.++.++++++ ++.+.++||++||...+. +
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~ 147 (246)
T 3osu_A 79 QFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV-----------G 147 (246)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------C
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC-----------C
Confidence 6999999999764332 33445668999999999999987 455667999999987652 3
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 223 (347)
..+...|+.||.+.+.+.+.++.++ .++++.+++||.+.++.. ..+.+ .......+.
T Consensus 148 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~-----------~~~~~~~~~~~~~~~--------- 207 (246)
T 3osu_A 148 NPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMT-----------DALSDELKEQMLTQI--------- 207 (246)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCC-----------SCSCHHHHHHHHTTC---------
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcc-----------cccCHHHHHHHHhcC---------
Confidence 3456789999999999999888753 379999999999998731 11222 333333221
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+.+.+|+|+++.+++.... ....|++|++.+|.
T Consensus 208 --------p~~r~~~~~dva~~v~~l~s~~~-~~itG~~i~vdgG~ 244 (246)
T 3osu_A 208 --------PLARFGQDTDIANTVAFLASDKA-KYITGQTIHVNGGM 244 (246)
T ss_dssp --------TTCSCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTS
T ss_pred --------CCCCCcCHHHHHHHHHHHhCccc-cCCCCCEEEeCCCc
Confidence 11236788999999999887522 24568999998774
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=206.36 Aligned_cols=251 Identities=14% Similarity=0.095 Sum_probs=164.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.+...+.+.... ..+.++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG-VSEQNVNSVVADVTTDAGQDEILSTTLGKF 84 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-cCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999997655544443331111 11246788999999999999888632
Q ss_pred -CCcEEEEccccccCCc--------cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccc-cCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE--------SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATA-YGWPKVVPCTE 143 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~-yg~~~~~~~~e 143 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... + ++||++||... +.
T Consensus 85 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~--------- 154 (278)
T 1spx_A 85 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLH--------- 154 (278)
T ss_dssp SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSS---------
T ss_pred CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEeccccccc---------
Confidence 6999999999754322 33445678999999999998877653 5 79999999876 52
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+..+...|+.||.+.+.+++.++.+. .++++++++||.++++........... ...+........... +
T Consensus 155 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~----p-- 225 (278)
T 1spx_A 155 --ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEET-SKKFYSTMATMKECV----P-- 225 (278)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC---------------HHHHHHHHHHC----T--
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchh-hhhhhHHHHHHHhcC----C--
Confidence 23345689999999999999887663 389999999999998732110000000 000111122211110 0
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCC-CCCeeEEccCCCcccHHHHHHHHHHHh
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPK-VGCEVYNLGTGKGTSVLEMVAAFEKAS 284 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~-~~~~~~nv~~~~~~s~~e~~~~i~~~~ 284 (347)
...+++++|+|+++.+++.... .. ..+++|++.+|..+++.|+++.+.+++
T Consensus 226 -----------~~~~~~~~dvA~~v~~l~s~~~-~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 -----------AGVMGQPQDIAEVIAFLADRKT-SSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp -----------TSSCBCHHHHHHHHHHHHCHHH-HTTCCSCEEEESTTGGGC------------
T ss_pred -----------CcCCCCHHHHHHHHHHHcCccc-cCcccCcEEEECCCcccccCcccccHHHHh
Confidence 1137899999999999886521 12 467999999999999999999988754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=209.89 Aligned_cols=246 Identities=13% Similarity=0.049 Sum_probs=178.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+........+.+.... +.++.++.+|++|.+++.++++..
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT---GNKVHAIQCDVRDPDMVQNTVSELIKVA 102 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc---CCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999998765554444443321 347889999999999999887643
Q ss_pred -CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHH-----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAA-----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~-----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||..... ...+.+...+++|+.++.++++++.. .+.++||++||...+. +.
T Consensus 103 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~ 171 (302)
T 1w6u_A 103 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-----------GS 171 (302)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----------CC
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc-----------CC
Confidence 579999999965432 22345567899999999999887653 2346999999987763 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.+|.+++.+++.++.+. .+++++++|||.++++... . ....... .........
T Consensus 172 ~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~---~---~~~~~~~-~~~~~~~~~----------- 233 (302)
T 1w6u_A 172 GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAF---S---RLDPTGT-FEKEMIGRI----------- 233 (302)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------------CCTTSH-HHHHHHTTC-----------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchh---h---hcccchh-hHHHHHhcC-----------
Confidence 456789999999999999988773 3899999999999986210 0 0000011 111222211
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK 286 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~ 286 (347)
....+++++|+|+++.+++.... ....+++|++.+|..+++.++++.+.+..|.
T Consensus 234 ------p~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 234 ------PCGRLGTVEELANLAAFLCSDYA-SWINGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp ------TTSSCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred ------CcCCCCCHHHHHHHHHHHcCCcc-cccCCCEEEECCCeeeccCCccccchhhccc
Confidence 11236789999999999886521 2346789999999888888888877766553
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=198.92 Aligned_cols=216 Identities=12% Similarity=0.072 Sum_probs=165.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..... ..++.++.+|++|.+++.+++++.
T Consensus 28 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 94 (260)
T 3un1_A 28 QKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA-------------DPDIHTVAGDISKPETADRIVREGIERF 94 (260)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS-------------STTEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------------cCceEEEEccCCCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999999999999866432 246889999999999999888643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||...+.. .+..
T Consensus 95 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------~~~~ 165 (260)
T 3un1_A 95 GRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP---------MVGM 165 (260)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC---------BTTC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC---------CCCC
Confidence 6999999999765432 33445678889999999998876 4556779999999876532 2334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.||.+.+.+++.++.++ .++++.+++||.+++|.. .... ...... .
T Consensus 166 ~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~----------~~~~---~~~~~~-~------------ 219 (260)
T 3un1_A 166 PSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMH----------PAET---HSTLAG-L------------ 219 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTS----------CGGG---HHHHHT-T------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCC----------CHHH---HHHHhc-c------------
Confidence 56789999999999999998886 379999999999998731 0111 111111 1
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+.+++|+|++++++.+. ....|++|++.+|...+
T Consensus 220 ----~p~~r~~~~~dva~av~~L~~~---~~itG~~i~vdGG~~~~ 258 (260)
T 3un1_A 220 ----HPVGRMGEIRDVVDAVLYLEHA---GFITGEILHVDGGQNAG 258 (260)
T ss_dssp ----STTSSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTGGGC
T ss_pred ----CCCCCCcCHHHHHHHHHHhccc---CCCCCcEEEECCCeecc
Confidence 1122467899999999998443 45678999998886543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=197.67 Aligned_cols=229 Identities=14% Similarity=0.084 Sum_probs=165.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+....+...+.+. ...+.++.++.+|++|.+++.+++++.
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHW---HAYADKVLRVRADVADEGDVNAAIAATMEQ 77 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHS---TTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---HhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999987655443333321 111346888999999999999888632
Q ss_pred --CCcEEEEccccccCCc-------cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE-------SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~-------~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+.
T Consensus 78 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 147 (250)
T 2cfc_A 78 FGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV---------- 147 (250)
T ss_dssp HSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred hCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc----------
Confidence 6999999999754322 233456788999999987766543 44678999999988763
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+..+...|+.+|.+.+.+++.++.+. .+++++++|||.+++|..... .. ...+...+....
T Consensus 148 -~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~------~~--~~~~~~~~~~~~-------- 210 (250)
T 2cfc_A 148 -AFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWR------LD--QPELRDQVLARI-------- 210 (250)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHH------HT--SHHHHHHHHTTC--------
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccc------cC--CHHHHHHHHhcC--------
Confidence 23456789999999999999887764 389999999999999731000 00 011222222211
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+.+.+|+|+++.+++.... ....++++++.+|.
T Consensus 211 ---------~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 211 ---------PQKEIGTAAQVADAVMFLAGEDA-TYVNGAALVMDGAY 247 (250)
T ss_dssp ---------TTCSCBCHHHHHHHHHHHHSTTC-TTCCSCEEEESTTG
T ss_pred ---------CCCCCcCHHHHHHHHHHHcCchh-hcccCCEEEECCce
Confidence 11236799999999999987621 23568899998774
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=198.45 Aligned_cols=224 Identities=15% Similarity=0.101 Sum_probs=163.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
++|+||||+|+||++++++|+++|++|++++|+....+...+. . .+.+++.+|++|.+++.++++.. ++|+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~ 79 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE---C-----PGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S-----TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---c-----CCCCEEEEeCCCHHHHHHHHHHcCCCCE
Confidence 6899999999999999999999999999999875443322221 1 24677899999999999999754 5899
Q ss_pred EEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 82 VIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 82 vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
|||+||...... ..+.+...+++|+.++.++++++... + .++||++||...+. +..+...
T Consensus 80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~~~ 148 (244)
T 3d3w_A 80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR-----------AVTNHSV 148 (244)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------CCTTBHH
T ss_pred EEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc-----------CCCCCch
Confidence 999999754332 22345678999999999988876643 4 57999999988763 3345678
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
|+.||.++|.+++.++.+. .+++++++|||.++++...... . .. ..........
T Consensus 149 Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~--~---~~---~~~~~~~~~~---------------- 204 (244)
T 3d3w_A 149 YCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATW--S---DP---HKAKTMLNRI---------------- 204 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHS--C---ST---THHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhc--c---Ch---HHHHHHHhhC----------------
Confidence 9999999999999888764 3799999999999986310000 0 00 0112222111
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+++++|+|+++++++.... ....+++|++.+|...
T Consensus 205 -~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~~~ 243 (244)
T 3d3w_A 205 -PLGKFAEVEHVVNAILFLLSDRS-GMTTGSTLPVEGGFWA 243 (244)
T ss_dssp -TTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGG
T ss_pred -CCCCCcCHHHHHHHHHHHcCccc-cCCCCCEEEECCCccC
Confidence 12357899999999999997521 2356789999887543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=196.80 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=166.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+|+||||+|+||++++++|+++|++|++++|+........+.+... +.++.++.+|++|.+++.++++..
T Consensus 14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME----GHDVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999866554444444332 347889999999999999887632
Q ss_pred CCcEEEEcccccc-CCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKA-VGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~-~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||... ... ..+.+...+++|+.++.++++++.. .+.++||++||...+.. .+..
T Consensus 90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------~~~~ 160 (260)
T 3awd_A 90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV---------NRPQ 160 (260)
T ss_dssp CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------CSSS
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhccc---------CCCC
Confidence 6999999999654 221 2233466889999999999888764 35679999999876532 1223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|.+.|.+++.++.+. .+++++++|||.+++|... . .. ....+...+..+.
T Consensus 161 ~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~-----~-~~--~~~~~~~~~~~~~------------ 220 (260)
T 3awd_A 161 QQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTR-----F-GM--EKPELYDAWIAGT------------ 220 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTH-----H-HH--TCHHHHHHHHHTC------------
T ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhh-----c-cc--CChHHHHHHHhcC------------
Confidence 34789999999999999888773 3899999999999997310 0 00 0011223332221
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++..++.... ....+++|++.+|.
T Consensus 221 -----~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 221 -----PMGRVGQPDEVASVVQFLASDAA-SLMTGAIVNVDAGF 257 (260)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTT
T ss_pred -----CcCCCCCHHHHHHHHHHHhCchh-ccCCCcEEEECCce
Confidence 11237899999999999987522 23567899998775
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=200.52 Aligned_cols=226 Identities=15% Similarity=0.094 Sum_probs=153.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+|+||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++.
T Consensus 14 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (266)
T 1xq1_A 14 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK----GFQVTGSVCDASLRPEREKLMQTVSSMF 89 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999999766554444444332 34688899999999999888753
Q ss_pred -CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+|||+||...... ..+.+...+++|+.++.++++++ ++.+.++||++||...+. +.
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~ 158 (266)
T 1xq1_A 90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV-----------SA 158 (266)
T ss_dssp TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc-----------CC
Confidence 26999999999754322 23345668899999999998887 455678999999988763 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.+...|+.+|.+.+.+++.++.+. .+++++++|||.+++|..... ..+ +......
T Consensus 159 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----------~~~~~~~~~~~------------ 216 (266)
T 1xq1_A 159 SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV----------YDDEFKKVVIS------------ 216 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------------------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh----------cCHHHHHHHHh------------
Confidence 456789999999999999887764 389999999999998731100 000 0011000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......+++++|+|+++.+++.... ....+++|++.+|..
T Consensus 217 -----~~~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 217 -----RKPLGRFGEPEEVSSLVAFLCMPAA-SYITGQTICVDGGLT 256 (266)
T ss_dssp ------------CCGGGGHHHHHHHTSGGG-TTCCSCEEECCCCEE
T ss_pred -----cCCCCCCcCHHHHHHHHHHHcCccc-cCccCcEEEEcCCcc
Confidence 1112247899999999999886521 235679999988754
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=199.90 Aligned_cols=229 Identities=17% Similarity=0.138 Sum_probs=172.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA----GGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999876666555555443 457889999999999998887643
Q ss_pred -CCcEEEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... +.++++..+++|+.++.++++++. +.+.++||++||...+. +..+
T Consensus 88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 156 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN-----------TNVR 156 (256)
T ss_dssp SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC-----------CCTT
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC-----------CCCC
Confidence 6999999999765422 334556789999999999988864 44567999999988762 3445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.||.+.+.+++.++.++ .++++.+++||.+..+.. .....+ ........
T Consensus 157 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~----------~~~~~~~~~~~~~~~------------- 213 (256)
T 3gaf_A 157 MASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDAL----------ATVLTPEIERAMLKH------------- 213 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHH----------HHHCCHHHHHHHHTT-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchh----------hhccCHHHHHHHHhc-------------
Confidence 6789999999999999888775 379999999999887510 000011 11122211
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
.....+.+++|+|+++++++... .....|+++++.+|...++
T Consensus 214 ----~p~~r~~~~~dva~~~~~L~s~~-~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 214 ----TPLGRLGEAQDIANAALFLCSPA-AAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp ----CTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSCCC-
T ss_pred ----CCCCCCCCHHHHHHHHHHHcCCc-ccCccCCEEEECCCccccC
Confidence 11234678999999999998752 2346789999998877654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=198.04 Aligned_cols=222 Identities=15% Similarity=0.107 Sum_probs=159.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-------GAAVRFRNADVTNEADATAALAFAKQEFG 80 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-------------------CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-------CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999887655444332 346788999999999999888643
Q ss_pred CCcEEEEccccccCCc--------cccCcchhhhhhhhHHHHHHHHHHHc----------CCCeEEEeccccccCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE--------SVQKPLPYFDNNLTGTITLLEVMAAH----------GCKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~~~~~----------~~~~iv~~SS~~~yg~~~~~ 139 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 81 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~----- 155 (257)
T 3tpc_A 81 HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD----- 155 (257)
T ss_dssp CCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-----
T ss_pred CCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc-----
Confidence 6999999999764321 23455678899999999999987753 345899999988763
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA 217 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (347)
+..+...|+.||.+.+.+.+.++.+. .++++.+++||.+.++... .+.+........
T Consensus 156 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~-----------~~~~~~~~~~~~---- 214 (257)
T 3tpc_A 156 ------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMA-----------GMPQDVQDALAA---- 214 (257)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC-------------------------C----
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhc-----------cCCHHHHHHHHh----
Confidence 33456789999999999998888773 3799999999999986311 011111111110
Q ss_pred eEEecccCCCCCCcee-eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 218 LTVFGTDYSTKDGTVV-RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 218 ~~~~g~~~~~~~~~~~-~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.... ..+.+.+|+|+++.+++.. +...|+++++.+|..++
T Consensus 215 ------------~~p~~~r~~~~~dva~~v~~l~s~---~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 215 ------------SVPFPPRLGRAEEYAALVKHICEN---TMLNGEVIRLDGALRMA 255 (257)
T ss_dssp ------------CSSSSCSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTCCC-
T ss_pred ------------cCCCCCCCCCHHHHHHHHHHHccc---CCcCCcEEEECCCccCC
Confidence 1111 2478899999999999975 45788999998887654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=195.84 Aligned_cols=223 Identities=21% Similarity=0.154 Sum_probs=168.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+ +.++.++.+|++|.+++.++++..
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (271)
T 3tzq_B 11 NKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-------GRGAVHHVVDLTNEVSVRALIDFTIDTF 83 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-------CCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999887765544433 347888999999999999888743
Q ss_pred -CCcEEEEccccccC------CccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV------GESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~------~~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||.... ..+.+.+...+++|+.++.++++++ ++.+.++||++||...+. +
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-----------~ 152 (271)
T 3tzq_B 84 GRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA-----------A 152 (271)
T ss_dssp SCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-----------B
T ss_pred CCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC-----------C
Confidence 69999999997632 1133445678999999999999987 556677999999988762 3
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
..+...|+.||.+.+.+++.++.+. .++++.+++||.+++|... . .. -...........
T Consensus 153 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~-----~-~~---~~~~~~~~~~~~---------- 213 (271)
T 3tzq_B 153 YDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLE-----V-GL---PQPIVDIFATHH---------- 213 (271)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC------------CHHHHHHHHTTS----------
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCcccc-----c-cC---CHHHHHHHHhcC----------
Confidence 4456789999999999999988874 3799999999999987311 0 00 111222222211
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+|+++.+++.... ....|+++++.+|.
T Consensus 214 -------~~~r~~~p~dvA~~v~~L~s~~~-~~itG~~i~vdGG~ 250 (271)
T 3tzq_B 214 -------LAGRIGEPHEIAELVCFLASDRA-AFITGQVIAADSGL 250 (271)
T ss_dssp -------TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTT
T ss_pred -------CCCCCcCHHHHHHHHHHHhCccc-CCcCCCEEEECCCc
Confidence 11236789999999999987622 34678999998873
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=196.54 Aligned_cols=239 Identities=14% Similarity=0.112 Sum_probs=167.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+..+.+...+.+.... +.++.++.+|++|.+++.++++..
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF---GVRVLEVAVDVATPEGVDAVVESVRSSFG 84 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999999998665544444443221 346888999999999998888632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +..+
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 153 (263)
T 3ai3_A 85 GADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQ-----------PLWY 153 (263)
T ss_dssp SCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCTT
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC-----------CCCC
Confidence 6999999999754322 233456788999999999888764 34667999999998874 2344
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCC-CCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGED-PRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.||.+.+.+++.++.+. .++++++++||.+++|........ ...................
T Consensus 154 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 221 (263)
T 3ai3_A 154 EPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH------------ 221 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH------------
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC------------
Confidence 5689999999999999888763 389999999999998620000000 0000000000111111100
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+++++|+|+++.+++... .....+++|++.+|...|
T Consensus 222 ----~p~~~~~~~~dvA~~~~~l~s~~-~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 ----APIKRFASPEELANFFVFLCSER-ATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHTSTT-CTTCCSCEEEESTTCCCC
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCcc-ccCCCCcEEEECCCcccc
Confidence 01134789999999999888752 223568999998887654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=195.27 Aligned_cols=227 Identities=13% Similarity=0.058 Sum_probs=170.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK----GFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999876665555554443 457889999999999999887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 149 (247)
T 3lyl_A 81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA-----------GNP 149 (247)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------CCT
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc-----------CCC
Confidence 5899999999765432 3345567899999999999887643 4556999999987762 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.++ .++++.+++||.+..+.. ..+.+.........
T Consensus 150 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~-----------~~~~~~~~~~~~~~------------ 206 (247)
T 3lyl_A 150 GQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMT-----------DKLTDEQKSFIATK------------ 206 (247)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTT-----------TTSCHHHHHHHHTT------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccc-----------hhccHHHHHHHhhc------------
Confidence 56789999999999999888764 479999999999987621 11222222222211
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.....+.+++|+|+++.+++.... ....|++|++.+|..+
T Consensus 207 ----~~~~~~~~~~dva~~i~~l~s~~~-~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 207 ----IPSGQIGEPKDIAAAVAFLASEEA-KYITGQTLHVNGGMYM 246 (247)
T ss_dssp ----STTCCCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTSSC
T ss_pred ----CCCCCCcCHHHHHHHHHHHhCCCc-CCccCCEEEECCCEec
Confidence 112347899999999999887522 3457899999888654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=200.78 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=164.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.. ......+.+... ...++.++.+|++|.+++.++++..
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL---SSGTVLHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT---CSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc---cCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999988543 333333333221 2457889999999999999888642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||...+. +.
T Consensus 102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 170 (281)
T 3v2h_A 102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV-----------AS 170 (281)
T ss_dssp TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CC
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc-----------CC
Confidence 6999999999765433 33445678999999999998886 445567999999988762 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHH-HHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQ-VAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 224 (347)
.....|+.||.+.+.+++.++.++ .++++.+++||.+.+|..... ....... ...........+.
T Consensus 171 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-- 238 (281)
T 3v2h_A 171 PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQ----------IPDQARTRGITEEQVINEVML-- 238 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------------------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhh----------cchhhhhcCCCHHHHHHHHHH--
Confidence 455789999999999999888774 379999999999998631100 0000000 0000000000111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.+.....+++++|+|+++++++.... ....|+++++.+|.
T Consensus 239 ----~~~p~~r~~~~edvA~~v~~L~s~~a-~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 239 ----KGQPTKKFITVEQVASLALYLAGDDA-AQITGTHVSMDGGW 278 (281)
T ss_dssp -----CCTTCSCBCHHHHHHHHHHHHSSGG-GGCCSCEEEESTTG
T ss_pred ----hcCCCCCccCHHHHHHHHHHHcCCCc-CCCCCcEEEECCCc
Confidence 23344568999999999999887521 23578999998774
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=197.83 Aligned_cols=244 Identities=17% Similarity=0.153 Sum_probs=168.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh--------HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS--------EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
+|+++||||+|+||++++++|+++|++|++++|+.... ....+.........+.++.++.+|++|.+++.++
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 89 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESF 89 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 37899999999999999999999999999999874320 1111111111111246788999999999999988
Q ss_pred HccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCC
Q 040584 74 FAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVP 140 (347)
Q Consensus 74 ~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~ 140 (347)
+++. ++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||...+.
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 163 (281)
T 3s55_A 90 VAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS------ 163 (281)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS------
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC------
Confidence 8643 6999999999765332 33455678899999999998885 344567999999988762
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCC---CCCCCCCCccHHHHHHHHcCCC
Q 040584 141 CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKG---EDPRGIPNNLMPFVTQVAVGRR 215 (347)
Q Consensus 141 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 215 (347)
+..+...|+.||.+.+.+.+.++.++ .++++.+++||.+++|...... ....................
T Consensus 164 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (281)
T 3s55_A 164 -----ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFAS-- 236 (281)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHHH--
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHHHh--
Confidence 34456789999999999999998874 3799999999999987321000 00000000000000110000
Q ss_pred CceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 216 PALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.......+++++|+|+++++++.... ....|+++++.+|...+
T Consensus 237 -------------~~~~~~~~~~p~dvA~~v~~L~s~~~-~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 237 -------------LHLQYAPFLKPEEVTRAVLFLVDEAS-SHITGTVLPIDAGATAR 279 (281)
T ss_dssp -------------HCSSSCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGG
T ss_pred -------------hhccCcCCCCHHHHHHHHHHHcCCcc-cCCCCCEEEECCCcccC
Confidence 01112458899999999999997622 24578999998887654
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=197.25 Aligned_cols=216 Identities=19% Similarity=0.156 Sum_probs=162.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+|+||||+|+||++++++|+++|++|++++|+.. . ..+.++.+|++|.+++.+++++.
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~---------------~~~~~~~~D~~~~~~~~~~~~~~~~~ 64 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G---------------EDLIYVEGDVTREEDVRRAVARAQEE 64 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S---------------SSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c---------------cceEEEeCCCCCHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999998765 2 24578999999999999888732
Q ss_pred -CCcEEEEccccccCCccc----c----CcchhhhhhhhHHHHHHHHHHHc----C------CCeEEEeccccccCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESV----Q----KPLPYFDNNLTGTITLLEVMAAH----G------CKNLVFSSSATAYGWPKV 138 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~----~----~~~~~~~~nv~~~~~l~~~~~~~----~------~~~iv~~SS~~~yg~~~~ 138 (347)
++|+|||+||........ + .+...+++|+.++.++++++... + .++||++||...+.
T Consensus 65 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---- 140 (242)
T 1uay_A 65 APLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE---- 140 (242)
T ss_dssp SCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH----
T ss_pred CCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc----
Confidence 589999999975433211 1 45678899999999999987753 1 12999999998874
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
+..+...|+.+|.+.+.+++.++.+. .+++++++|||.++++... . ....+...+....
T Consensus 141 -------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~-------~---~~~~~~~~~~~~~-- 201 (242)
T 1uay_A 141 -------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQ-------G---LPEKAKASLAAQV-- 201 (242)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHH-------T---SCHHHHHHHHTTC--
T ss_pred -------CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhh-------c---cchhHHHHHHhhC--
Confidence 23456789999999999998887663 3799999999999986210 0 0111222222211
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
++ ...+++++|+|+++++++.. +...++.|++.+|..++
T Consensus 202 ~~--------------~~~~~~~~dva~~~~~l~~~---~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 202 PF--------------PPRLGRPEEYAALVLHILEN---PMLNGEVVRLDGALRMA 240 (242)
T ss_dssp CS--------------SCSCCCHHHHHHHHHHHHHC---TTCCSCEEEESTTCCCC
T ss_pred CC--------------cccCCCHHHHHHHHHHHhcC---CCCCCcEEEEcCCeecC
Confidence 00 02378899999999999986 34678999998886543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-26 Score=197.48 Aligned_cols=232 Identities=14% Similarity=0.111 Sum_probs=166.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|+++.|+....... +.+.....+.++.++.+|++|.+++.+++++.
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMET---MKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH---HHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHH---HHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999987766543322 22222222457889999999999999888743
Q ss_pred --CCcEEEEcccc--ccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGL--KAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 --~~d~vih~a~~--~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||. ..... ..+.+...+++|+.++.++++++ ++.+.++||++||...++. .
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~---------~ 153 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSA---------P 153 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGC---------C
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhccc---------C
Confidence 69999999994 22111 23445678999999999999987 5556779999999865421 1
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+..+...|+.+|.+.+.+++.++.+. .++++++++||.++++.. ....+.......
T Consensus 154 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~-----------~~~~~~~~~~~~----------- 211 (264)
T 3i4f_A 154 GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMK-----------EATIQEARQLKE----------- 211 (264)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGG-----------SCCHHHHHHC-------------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccc-----------hhccHHHHHHHh-----------
Confidence 33456789999999999999888773 379999999999998621 112222111111
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.......+.+.+|+|+++.+++.... ....|++|++.+|....
T Consensus 212 -----~~~p~~r~~~~~dva~~v~~l~s~~~-~~itG~~i~vdGG~~~~ 254 (264)
T 3i4f_A 212 -----HNTPIGRSGTGEDIARTISFLCEDDS-DMITGTIIEVTGAVDVI 254 (264)
T ss_dssp -----------CCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESCSCCCC
T ss_pred -----hcCCCCCCcCHHHHHHHHHHHcCccc-CCCCCcEEEEcCceeec
Confidence 01122346789999999999997622 24578999998886544
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=201.22 Aligned_cols=234 Identities=15% Similarity=0.016 Sum_probs=161.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc---cCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG---YQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
+++|+||||+|+||+++++.|+++|++|++++|+....+...+.+..... ....++.++.+|++|.+++.++++..
T Consensus 7 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (264)
T 2pd6_A 7 SALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQVQ 86 (264)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHHH
Confidence 37899999999999999999999999999999876554433322221100 00146788999999999998887642
Q ss_pred ----CC-cEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCC
Q 040584 78 ----KF-DAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 ----~~-d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++ |+||||||...... ..+.+...+++|+.++.++++++... + .++||++||...+.
T Consensus 87 ~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 157 (264)
T 2pd6_A 87 ACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV--------- 157 (264)
T ss_dssp HHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH---------
T ss_pred HHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc---------
Confidence 34 99999999754322 33455678999999999999887653 4 46999999986542
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEE
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTV 220 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 220 (347)
+..+...|+.+|.+++.+++.++.+. .+++++++|||.+++|.... +.+ +......+
T Consensus 158 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----------~~~~~~~~~~~~------- 217 (264)
T 2pd6_A 158 --GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK-----------VPQKVVDKITEM------- 217 (264)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC---------------------CTGGG-------
T ss_pred --CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh-----------cCHHHHHHHHHh-------
Confidence 23455789999999999999887763 38999999999999973110 101 11111110
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
.....+++++|+|+++..++.... ....++.+++.+|..++...
T Consensus 218 ----------~~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~~~~~~~ 261 (264)
T 2pd6_A 218 ----------IPMGHLGDPEDVADVVAFLASEDS-GYITGTSVEVTGGLFMAENL 261 (264)
T ss_dssp ----------CTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC------
T ss_pred ----------CCCCCCCCHHHHHHHHHHHcCCcc-cCCCCCEEEECCCceecccc
Confidence 011246789999999999987522 24568999998887665544
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=197.03 Aligned_cols=224 Identities=14% Similarity=0.102 Sum_probs=162.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+... .+.++.++.+|++|.+++.+++++.
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANK---YGVKAHGVEMNLLSEESINKAFEEIYNLVD 84 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhh---cCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999765554444443321 1347888999999999999888632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||...... ..+.+...+++|+.++.+++++ +++.+.++||++||...+. +..+
T Consensus 85 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~~ 153 (248)
T 2pnf_A 85 GIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFT-----------GNVG 153 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHH-----------CCTT
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcC-----------CCCC
Confidence 6999999999754322 2334567899999999776664 4455678999999976542 2234
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHH-HHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFV-TQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.+|.+.+.+++.++.+. .+++++++|||.++++... .+.... .......
T Consensus 154 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~~~~~------------ 210 (248)
T 2pnf_A 154 QVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTA-----------VLSEEIKQKYKEQI------------ 210 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG-----------GSCHHHHHHHHHTC------------
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhh-----------hccHHHHHHHHhcC------------
Confidence 5689999999999999887764 3799999999999986310 111111 1111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++.+++.... ....+++|++++|.
T Consensus 211 -----~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 211 -----PLGRFGSPEEVANVVLFLCSELA-SYITGEVIHVNGGM 247 (248)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC
T ss_pred -----CCCCccCHHHHHHHHHHHhCchh-hcCCCcEEEeCCCc
Confidence 11247899999999999987521 23567899998763
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=196.73 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=163.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|+++ .|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----GGQAITFGGDVSKEADVEAMMKTAIDA 76 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999985 67655544444444332 346888999999999999888642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +.
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~~ 145 (244)
T 1edo_A 77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI-----------GN 145 (244)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------CC
T ss_pred cCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcC-----------CC
Confidence 5999999999765322 2334566889999999999887765 3567999999986642 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.+...|+.+|.+.+.+++.++.+. .+++++++|||.++++... .+.+ ....... ..
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~~~-~~--------- 204 (244)
T 1edo_A 146 IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA-----------KLGEDMEKKILG-TI--------- 204 (244)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH-----------TTCHHHHHHHHT-SC---------
T ss_pred CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhh-----------hcChHHHHHHhh-cC---------
Confidence 345789999999999998887764 4899999999999986210 0111 2222221 10
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++.+++.........+++|++.+|.
T Consensus 205 -------~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 205 -------PLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp -------TTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred -------CCCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 11237899999999999985422223467899998774
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=194.71 Aligned_cols=223 Identities=13% Similarity=0.078 Sum_probs=154.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|+++ .|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA----GINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT----TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999998 56655554444444332 357889999999999999887642
Q ss_pred --CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccc-cCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATA-YGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~-yg~~~~~~~~e~~~ 146 (347)
++|+||||||..... ...+.+...+++|+.++.++++++.. .+.++||++||... |+
T Consensus 81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 148 (247)
T 2hq1_A 81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIG------------ 148 (247)
T ss_dssp HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC------------
Confidence 699999999975432 23456678999999999888877653 46679999999754 42
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 223 (347)
..+...|+.+|.+.+.+++.++.+. .++++++++||.+.++.. ..+.. .......+
T Consensus 149 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-----------~~~~~~~~~~~~~~---------- 207 (247)
T 2hq1_A 149 NAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMT-----------DVLPDKVKEMYLNN---------- 207 (247)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-----------HTSCHHHHHHHHTT----------
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccch-----------hhcchHHHHHHHhh----------
Confidence 2345789999999999999887764 378999999998876510 00111 11222221
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+++++|+|+++.+++.... ....+++|++++|.
T Consensus 208 -------~~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 208 -------IPLKRFGTPEEVANVVGFLASDDS-NYITGQVINIDGGL 245 (247)
T ss_dssp -------STTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC
T ss_pred -------CCCCCCCCHHHHHHHHHHHcCccc-ccccCcEEEeCCCc
Confidence 111247899999999998887521 23467899998775
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=197.95 Aligned_cols=233 Identities=15% Similarity=0.060 Sum_probs=167.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++.
T Consensus 9 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK----GFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999866555444444332 34678899999999999888752
Q ss_pred -CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 153 (260)
T 2ae2_A 85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-----------AV 153 (260)
T ss_dssp TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS-----------CC
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc-----------CC
Confidence 26999999999754322 233456688999999999988874 45567999999987753 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+++.++.+. .++++++++||.+.++..... . . .......+......
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~-~-~~~~~~~~~~~~~~------------ 216 (260)
T 2ae2_A 154 PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMT---I-Q-DPEQKENLNKLIDR------------ 216 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHH---T-T-SHHHHHHHHHHHHT------------
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhh---c-c-ChhhHHHHHHHHhc------------
Confidence 445789999999999999988775 379999999999887510000 0 0 00000001111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+++++|+|+++.+++.... ....++++++.+|...+
T Consensus 217 -----~~~~~~~~~~dvA~~v~~l~s~~~-~~~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 217 -----CALRRMGEPKELAAMVAFLCFPAA-SYVTGQIIYVDGGLMAN 257 (260)
T ss_dssp -----STTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGC
T ss_pred -----CCCCCCCCHHHHHHHHHHHcCccc-cCCCCCEEEECCCcccc
Confidence 112247899999999999886521 23568999998876543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=194.12 Aligned_cols=231 Identities=11% Similarity=0.071 Sum_probs=168.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ----FPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC----STTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999987665554444432 2457889999999999999887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH-----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA-----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~-----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... +.+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 150 (257)
T 3imf_A 82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD-----------AG 150 (257)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS-----------CC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc-----------CC
Confidence 6999999999654332 234456789999999999988873 33457999999988762 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhcC---CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSDS---EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~~---~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.||.+.+.+.+.++.++. ++++.+++||.+.++..... ......+ .......
T Consensus 151 ~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~----~~~~~~~---~~~~~~~----------- 212 (257)
T 3imf_A 151 PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADK----LWISEEM---AKRTIQS----------- 212 (257)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-----------CC---SHHHHTT-----------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhh----cccCHHH---HHHHHhc-----------
Confidence 4567899999999999998886642 89999999999998731100 0000001 1111111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+...+|+|+++++++.... ....|+++++.+|..++
T Consensus 213 ------~p~~r~~~pedvA~~v~~L~s~~~-~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 213 ------VPLGRLGTPEEIAGLAYYLCSDEA-AYINGTCMTMDGGQHLH 253 (257)
T ss_dssp ------STTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTTSC
T ss_pred ------CCCCCCcCHHHHHHHHHHHcCchh-cCccCCEEEECCCcccC
Confidence 111236789999999999987622 24578999998887554
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=193.19 Aligned_cols=222 Identities=14% Similarity=0.055 Sum_probs=161.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+++|+||||+|+||++++++|+++|++|++++|+....+...+.+ ..++.++.+|++|.+++.+++++. ++|
T Consensus 14 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~id 86 (249)
T 3f9i_A 14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-------KDNYTIEVCNLANKEECSNLISKTSNLD 86 (249)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-------ccCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence 478999999999999999999999999999999765544433332 347888999999999999998865 699
Q ss_pred EEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 81 AVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 81 ~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
+||||||..... ...+.+...+++|+.++.++++++. +.+.++||++||...+. +..+...
T Consensus 87 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~ 155 (249)
T 3f9i_A 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA-----------GNPGQAN 155 (249)
T ss_dssp EEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC-------------CCSCSHH
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc-----------CCCCCch
Confidence 999999975432 2345677899999999999988764 34567999999988763 3345678
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
|+.||.+.+.+++.++.++ .++++.+++||.+.++.. ..+.. .......+
T Consensus 156 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~-----------~~~~~~~~~~~~~~---------------- 208 (249)
T 3f9i_A 156 YCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMT-----------DKLNEKQREAIVQK---------------- 208 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC-----------------CCHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcc-----------cccCHHHHHHHHhc----------------
Confidence 9999999999999887764 379999999999987621 11111 22222211
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....+.+++|+|+++.+++.... ....|++|++.+|..
T Consensus 209 -~~~~~~~~~~dva~~~~~l~s~~~-~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 209 -IPLGTYGIPEDVAYAVAFLASNNA-SYITGQTLHVNGGML 247 (249)
T ss_dssp -CTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTSS
T ss_pred -CCCCCCcCHHHHHHHHHHHcCCcc-CCccCcEEEECCCEe
Confidence 112347889999999999997632 235789999988754
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=201.53 Aligned_cols=230 Identities=16% Similarity=0.106 Sum_probs=167.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++..+.+|++|.+++.++++..
T Consensus 14 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 89 (260)
T 2zat_A 14 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE----GLSVTGTVCHVGKAEDRERLVAMAVNLH 89 (260)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999766554444444332 346888999999999988877632
Q ss_pred -CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||.... . ...+.+...+++|+.++.++++++. +.+.++||++||...|. +.
T Consensus 90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 158 (260)
T 2zat_A 90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH-----------PF 158 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-----------CC
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC-----------CC
Confidence 69999999996431 1 1233456788999999998888764 45667999999998873 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.+|.+.+.+++.++.+. .++++++++||.+.++.... .... .........
T Consensus 159 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------~~~~--~~~~~~~~~------------- 217 (260)
T 2zat_A 159 PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQV------LWMD--KARKEYMKE------------- 217 (260)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHH------HHSS--HHHHHHHHH-------------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchh------cccC--hHHHHHHHh-------------
Confidence 456789999999999999887764 37999999999998762100 0000 000011110
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
......+++++|+|+++.+++.... ....+++|++.+|...|
T Consensus 218 ----~~~~~~~~~~~dva~~v~~l~s~~~-~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 218 ----SLRIRRLGNPEDCAGIVSFLCSEDA-SYITGETVVVGGGTASR 259 (260)
T ss_dssp ----HHTCSSCBCGGGGHHHHHHHTSGGG-TTCCSCEEEESTTCCCC
T ss_pred ----cCCCCCCCCHHHHHHHHHHHcCccc-CCccCCEEEECCCcccc
Confidence 0112347899999999999886521 23468999999887665
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=188.15 Aligned_cols=204 Identities=11% Similarity=0.079 Sum_probs=147.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHH-hCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~-~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
||++|+||||+|+||++++++|+ ++|++|+++.|++. ..+... . ...++.++.+|++|.+++.++++ +
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~----~~~~~~~~~~D~~d~~~~~~~~~--~ 73 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----I----DHERVTVIEGSFQNPGXLEQAVT--N 73 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----H----TSTTEEEEECCTTCHHHHHHHHT--T
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----c----CCCceEEEECCCCCHHHHHHHHc--C
Confidence 45669999999999999999999 89999999999755 433221 0 14578999999999999999998 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCC-chhhhH
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN-PYGRSK 157 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~-~Y~~sK 157 (347)
+|+|||+||.. |+. ++++++++++.+++|||++||..+|+..... ..+. ...... .|+.+|
T Consensus 74 ~d~vv~~ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~-~~~~-~~~~~~~~y~~~K 135 (221)
T 3r6d_A 74 AEVVFVGAMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA-LEKW-TFDNLPISYVQGE 135 (221)
T ss_dssp CSEEEESCCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH-HHHH-HHHTSCHHHHHHH
T ss_pred CCEEEEcCCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc-cccc-cccccccHHHHHH
Confidence 99999999852 445 8899999999999999999999998632110 0000 001223 799999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
..+|.+++. .+++++++||+.++++... . . +..... .......++
T Consensus 136 ~~~e~~~~~-----~~i~~~~vrpg~v~~~~~~-------~---------------~---~~~~~~-----~~~~~~~~~ 180 (221)
T 3r6d_A 136 RQARNVLRE-----SNLNYTILRLTWLYNDPEX-------T---------------D---YELIPE-----GAQFNDAQV 180 (221)
T ss_dssp HHHHHHHHH-----SCSEEEEEEECEEECCTTC-------C---------------C---CEEECT-----TSCCCCCEE
T ss_pred HHHHHHHHh-----CCCCEEEEechhhcCCCCC-------c---------------c---eeeccC-----CccCCCcee
Confidence 999998864 3899999999999986210 0 0 000000 001112379
Q ss_pred eHHHHHHHHHHHH--HhcCCCCCCCeeEEccCCC
Q 040584 238 HVVDLADGHIAAL--RKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 238 ~v~D~a~a~~~~~--~~~~~~~~~~~~~nv~~~~ 269 (347)
+.+|+|+++++++ ... ....++.+.++++.
T Consensus 181 ~~~dvA~~~~~l~~~~~~--~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 181 SREAVVKAIFDILHAADE--TPFHRTSIGVGEPG 212 (221)
T ss_dssp EHHHHHHHHHHHHTCSCC--GGGTTEEEEEECTT
T ss_pred eHHHHHHHHHHHHHhcCh--hhhhcceeeecCCC
Confidence 9999999999999 652 22456778776543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=194.72 Aligned_cols=225 Identities=19% Similarity=0.154 Sum_probs=143.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... ..++.++.+|++|.+++.++++..
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999877666555555443 457889999999999999888643
Q ss_pred -CCcEEEEcccccc---CC----ccccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKA---VG----ESVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -~~d~vih~a~~~~---~~----~~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||... .. ...+.+...+++|+.++.+++++ +++.+.++||++||...|.
T Consensus 85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 153 (253)
T 3qiv_A 85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL----------- 153 (253)
T ss_dssp SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------------
T ss_pred CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC-----------
Confidence 6999999999732 11 13344567899999997766665 4445667999999998762
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+...|+.||.+.+.+++.++.++ .++++.+++||.++++..... . ...+...+..
T Consensus 154 ---~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~----~~~~~~~~~~----------- 210 (253)
T 3qiv_A 154 ---YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT-----T----PKEMVDDIVK----------- 210 (253)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC------------------------------------------
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc-----C----cHHHHHHHhc-----------
Confidence 33569999999999999998885 379999999999998631100 0 0001111111
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
+.....+.+++|+|+++.+++.... ....|++|++.+|..+
T Consensus 211 ------~~~~~~~~~~~dva~~~~~l~s~~~-~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 211 ------GLPLSRMGTPDDLVGMCLFLLSDEA-SWITGQIFNVDGGQII 251 (253)
T ss_dssp ---------------CCHHHHHHHHHHSGGG-TTCCSCEEEC------
T ss_pred ------cCCCCCCCCHHHHHHHHHHHcCccc-cCCCCCEEEECCCeec
Confidence 1222346678999999999987522 2457899999888654
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=195.80 Aligned_cols=229 Identities=15% Similarity=0.121 Sum_probs=168.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|+++ .|+........+.+... +.++.++.+|++|.+++.++++..
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL----GVKVLVVKANVGQPAKIKEMFQQIDET 79 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999886 67655554444444332 457889999999999999888643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~ 148 (258)
T 3oid_A 80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR-----------YL 148 (258)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS-----------BC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC-----------CC
Confidence 6899999999654332 233455689999999999988774 34566999999988762 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+++.++.++ .++++.+++||.+..+..... . .............
T Consensus 149 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-------~-~~~~~~~~~~~~~----------- 209 (258)
T 3oid_A 149 ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHF-------P-NREDLLEDARQNT----------- 209 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGC-------T-THHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhc-------c-cCHHHHHHHHhcC-----------
Confidence 556789999999999999998875 379999999999987621100 0 0011222222211
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+.+++|+|+++++++... .....|+++++.+|...
T Consensus 210 ------p~~r~~~~~dva~~v~~L~s~~-~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 210 ------PAGRMVEIKDMVDTVEFLVSSK-ADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp ------TTSSCBCHHHHHHHHHHHTSST-TTTCCSCEEEESTTGGG
T ss_pred ------CCCCCcCHHHHHHHHHHHhCcc-cCCccCCEEEECCCccC
Confidence 1123678999999999988762 23467899999888643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=194.45 Aligned_cols=229 Identities=16% Similarity=0.114 Sum_probs=170.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... ...++.++.+|++|.+++.++++..
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL---GSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT---SSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh---CCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999876665555554432 1257889999999999999887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++... +.++||++||...+. .+..
T Consensus 87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------~~~~ 156 (262)
T 3pk0_A 87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI----------TGYP 156 (262)
T ss_dssp SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT----------BCCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc----------CCCC
Confidence 6999999999765332 33445667899999999998876654 677999999976521 1234
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.||.+.+.+++.++.++ .++++.+++||.++++... ..............
T Consensus 157 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~----------~~~~~~~~~~~~~~------------ 214 (262)
T 3pk0_A 157 GWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLL----------ENGEEYIASMARSI------------ 214 (262)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHH----------TTCHHHHHHHHTTS------------
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccc----------ccCHHHHHHHHhcC------------
Confidence 56789999999999999988874 3899999999999986210 00112222222211
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+...+|+|+++.+++.... ....|+++++.+|..+
T Consensus 215 -----p~~r~~~p~dva~~v~~L~s~~~-~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 215 -----PAGALGTPEDIGHLAAFLATKEA-GYITGQAIAVDGGQVL 253 (262)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTTC
T ss_pred -----CCCCCcCHHHHHHHHHHHhCccc-cCCcCCEEEECCCeec
Confidence 11136789999999999987522 3467899999888654
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=195.00 Aligned_cols=224 Identities=16% Similarity=0.109 Sum_probs=166.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|+++.|... ..+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA----GGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999887443 333333333332 457889999999999999887643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... +.+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 172 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM-----------GN 172 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH-----------CC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC-----------CC
Confidence 6999999999765432 334556789999999999988764 34567999999987652 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHH-HHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFV-TQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.||.+.+.+.+.++.++ .++++.+++||.+.++. ..... .......
T Consensus 173 ~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~--------------~~~~~~~~~~~~~---------- 228 (269)
T 4dmm_A 173 PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM--------------TSELAAEKLLEVI---------- 228 (269)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSC--------------SCHHHHHHHGGGC----------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcc--------------cccccHHHHHhcC----------
Confidence 445789999999999999888764 37999999999998762 11111 1111111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+.+.+|+|+++.+++..+......|++|++.+|..+
T Consensus 229 -------p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 229 -------PLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp -------TTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred -------CCCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 1123678999999999999762223467899999888654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=195.71 Aligned_cols=231 Identities=14% Similarity=0.136 Sum_probs=166.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+ +.++.++.+|++|.+++.++++..
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-------GSKAFGVRVDVSSAKDAESMVEKTTAKW 99 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998765544433332 457889999999999999888643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 100 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 168 (277)
T 4dqx_A 100 GRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS-----------AIA 168 (277)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc-----------CCC
Confidence 6999999999754432 2334556788999999999887653 3456999999988762 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.||.+.+.+++.++.++ .++++.+++||.+..+........ .............
T Consensus 169 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~----~~~~~~~~~~~~~-------------- 230 (277)
T 4dqx_A 169 DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAE----AKDPAKLRSDFNA-------------- 230 (277)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHT----CSCHHHHHHHHHT--------------
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhccc----ccchhHHHHHHHh--------------
Confidence 56789999999999999888775 379999999999887510000000 0000001111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
......+.+++|+|+++++++.... ....|+++++.+|..++
T Consensus 231 ---~~~~~r~~~pedvA~~v~~L~s~~~-~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 231 ---RAVMDRMGTAEEIAEAMLFLASDRS-RFATGSILTVDGGSSIG 272 (277)
T ss_dssp ---TSTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESSSSSSC
T ss_pred ---cCcccCCcCHHHHHHHHHHHhCCcc-CCCcCCEEEECCchhhh
Confidence 1122346789999999999987622 24678999998887554
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=195.26 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=164.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 1 m~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~ 76 (256)
T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----GGHAVAVKVDVSDRDQVFAAVEQARKT 76 (256)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999766555444444332 346888999999999998887632
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+ .++||++||...+. +
T Consensus 77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~ 145 (256)
T 1geg_A 77 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV-----------G 145 (256)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------C
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC-----------C
Confidence 6999999999754322 2334556899999999888776553 34 56999999987652 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc--CC-CCc-eEE
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV--GR-RPA-LTV 220 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~ 220 (347)
......|+.||.+.+.+++.++.+. .++++++++||.+.++. .......... +. ... ...
T Consensus 146 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~--------------~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
T 1geg_A 146 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM--------------WAEIDRQVSEAAGKPLGYGTAE 211 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH--------------HHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccch--------------hhhhhhhccccccCChHHHHHH
Confidence 2345689999999999999887764 37999999999998751 0011000000 00 000 000
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+. .......+.+.+|+|+++.+++.... ....++++++.+|..
T Consensus 212 ~~------~~~p~~r~~~p~dvA~~v~~l~s~~~-~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 212 FA------KRITLGRLSEPEDVAACVSYLASPDS-DYMTGQSLLIDGGMV 254 (256)
T ss_dssp HH------TTCTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESSSSS
T ss_pred HH------hcCCCCCCcCHHHHHHHHHHHhCccc-cCCCCCEEEeCCCcc
Confidence 00 00011237899999999999987522 245789999987754
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=197.36 Aligned_cols=234 Identities=18% Similarity=0.152 Sum_probs=164.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC-CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++| +....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 21 ~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 21 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988 433333333333332 457888999999999998888632
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEecccccc-CCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAY-GWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~y-g~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++... + ++||++||...+ . +.
T Consensus 97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~-----------~~ 164 (274)
T 1ja9_A 97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMT-----------GI 164 (274)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCC-----------SC
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccC-----------CC
Confidence 6999999999754322 23344678999999999999988764 4 699999998876 3 12
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCC--CCCCCCCcc-HHHHHHHHcCCCCceEEec
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGE--DPRGIPNNL-MPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 222 (347)
.+...|+.+|.++|.+++.++.+. .+++++++|||.++++....... .+....... .........
T Consensus 165 ~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 234 (274)
T 1ja9_A 165 PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLAN---------- 234 (274)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHH----------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHh----------
Confidence 345679999999999999887764 38999999999998752100000 000000000 111111111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+.....+++++|+|+++.+++.... ....+++|++++|.
T Consensus 235 -------~~~~~~~~~~~dva~~i~~l~~~~~-~~~~G~~~~v~gG~ 273 (274)
T 1ja9_A 235 -------MNPLKRIGYPADIGRAVSALCQEES-EWINGQVIKLTGGG 273 (274)
T ss_dssp -------TSTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC
T ss_pred -------cCCCCCccCHHHHHHHHHHHhCccc-ccccCcEEEecCCc
Confidence 1122358899999999999987521 22467899998763
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=187.91 Aligned_cols=189 Identities=12% Similarity=0.091 Sum_probs=148.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
|+|+||||+|+||++++++|+ +|++|++++|+.. .+.+|++|.+++.+++++. ++|+
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~---------------------~~~~D~~~~~~~~~~~~~~~~~d~ 61 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG---------------------DVTVDITNIDSIKKMYEQVGKVDA 61 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS---------------------SEECCTTCHHHHHHHHHHHCCEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc---------------------ceeeecCCHHHHHHHHHHhCCCCE
Confidence 589999999999999999999 9999999998643 3678999999999988753 4899
Q ss_pred EEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchh
Q 040584 82 VIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYG 154 (347)
Q Consensus 82 vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~ 154 (347)
|||+||....... .+.+...+++|+.++.++++++... + ++||++||...+. +..+...|+
T Consensus 62 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~-----------~~~~~~~Y~ 129 (202)
T 3d7l_A 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMED-----------PIVQGASAA 129 (202)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTS-----------CCTTCHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcC-----------CCCccHHHH
Confidence 9999996543322 2334567789999999999998775 3 6999999987753 334567899
Q ss_pred hhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 155 RSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
.+|.++|.+++.++.+. .+++++++||+.++++. . .... ....
T Consensus 130 ~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~---------------~----~~~~-----------------~~~~ 173 (202)
T 3d7l_A 130 MANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESW---------------D----KLEP-----------------FFEG 173 (202)
T ss_dssp HHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGH---------------H----HHGG-----------------GSTT
T ss_pred HHHHHHHHHHHHHHHHccCCeEEEEEecCccCCch---------------h----hhhh-----------------hccc
Confidence 99999999999988764 48999999999999861 1 1111 1123
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
+++++++|+|++++.++.. ...+++||+
T Consensus 174 ~~~~~~~dva~~~~~~~~~----~~~G~~~~v 201 (202)
T 3d7l_A 174 FLPVPAAKVARAFEKSVFG----AQTGESYQV 201 (202)
T ss_dssp CCCBCHHHHHHHHHHHHHS----CCCSCEEEE
T ss_pred cCCCCHHHHHHHHHHhhhc----cccCceEec
Confidence 4689999999999888843 456688887
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=193.28 Aligned_cols=223 Identities=18% Similarity=0.195 Sum_probs=161.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-------GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998755443322221 236788999999999998887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++..+++ .+++.+.++||++||...+. +..
T Consensus 78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 146 (254)
T 1hdc_A 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM-----------GLA 146 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc-----------CCC
Confidence 6999999999754322 234456788999999985544 45555677999999988763 234
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|.+.+.+++.++.+. .++++++++||.++++. ...........+.
T Consensus 147 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~------------------~~~~~~~~~~~~~------- 201 (254)
T 1hdc_A 147 LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM------------------TAETGIRQGEGNY------- 201 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH------------------HHHHTCCCSTTSC-------
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcc------------------ccccchhHHHHHH-------
Confidence 55789999999999999887764 37999999999998851 1111100000000
Q ss_pred CCCCceeeeee-eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYI-HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i-~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.......+. +.+|+|+++++++.... ....++++++.+|..
T Consensus 202 --~~~p~~~~~~~~~dvA~~v~~l~s~~~-~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 202 --PNTPMGRVGNEPGEIAGAVVKLLSDTS-SYVTGAELAVDGGWT 243 (254)
T ss_dssp --TTSTTSSCB-CHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTT
T ss_pred --hcCCCCCCCCCHHHHHHHHHHHhCchh-cCCCCCEEEECCCcc
Confidence 001112367 89999999999987522 245689999987753
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=193.76 Aligned_cols=235 Identities=14% Similarity=0.159 Sum_probs=165.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+... .....+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (258)
T 3a28_C 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA----ADQKAVFVGLDVTDKANFDSAIDEAA 76 (258)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999987665 3333333332 1357888999999999998887632
Q ss_pred ----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCC-CeEEEeccccccCCCCCCCCCCC
Q 040584 78 ----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGC-KNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~-~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+. ++||++||...+.
T Consensus 77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 146 (258)
T 3a28_C 77 EKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ---------- 146 (258)
T ss_dssp HHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS----------
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc----------
Confidence 6999999999754332 2344567899999999999887664 355 7999999987752
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH--cCC--CCce
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA--VGR--RPAL 218 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~ 218 (347)
+..+...|+.||.+.+.+.+.++.++ .++++++++||.+..+. ......... .+. ....
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~--------------~~~~~~~~~~~~~~~~~~~~ 211 (258)
T 3a28_C 147 -GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGM--------------WEQIDAELSKINGKPIGENF 211 (258)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHH--------------HHHHHHHHHHHHCCCTTHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChh--------------hhhhhhhhccccCCchHHHH
Confidence 33445789999999999999887764 37999999999987651 000010000 000 0000
Q ss_pred EEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 219 TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
..+. .......+.+.+|+|+++.+++.... ....++++++.+|..+
T Consensus 212 ~~~~------~~~p~~r~~~p~dvA~~v~~l~s~~~-~~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 212 KEYS------SSIALGRPSVPEDVAGLVSFLASENS-NYVTGQVMLVDGGMLY 257 (258)
T ss_dssp HHHH------TTCTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESSSSCC
T ss_pred HHHH------hcCCCCCccCHHHHHHHHHHHhCccc-CCCCCCEEEECCCEec
Confidence 0000 00011237899999999999987522 2457899999887543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=188.69 Aligned_cols=202 Identities=16% Similarity=0.036 Sum_probs=140.5
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|||+||||||+|+||++++++|+++| ++|+++.|++.+.... ...++.++.+|++|.+++.++++ ++
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~----------~~~~~~~~~~Dl~d~~~~~~~~~--~~ 89 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP----------YPTNSQIIMGDVLNHAALKQAMQ--GQ 89 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS----------CCTTEEEEECCTTCHHHHHHHHT--TC
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc----------ccCCcEEEEecCCCHHHHHHHhc--CC
Confidence 46889999999999999999999999 9999999986653211 13478899999999999999999 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCC--CCCCCCCCCCCchhhhH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVP--CTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~--~~e~~~~~~~~~Y~~sK 157 (347)
|+|||+|+... ....+.++++++++.++++||++||..+|+...... ..+..+.. +...+
T Consensus 90 D~vv~~a~~~~--------------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~----~~~~~ 151 (236)
T 3qvo_A 90 DIVYANLTGED--------------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGE----PLKPF 151 (236)
T ss_dssp SEEEEECCSTT--------------HHHHHHHHHHHHHHTTCCEEEEECCCCC----------------CG----GGHHH
T ss_pred CEEEEcCCCCc--------------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccc----hHHHH
Confidence 99999998521 113466899999999999999999999997543321 22222222 33334
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
..+|..++ . .+++++++||+.++++....+ ... .. .......++
T Consensus 152 ~~~~~~l~----~-~gi~~~~vrPg~i~~~~~~~~------------------------~~~-~~------~~~~~~~~i 195 (236)
T 3qvo_A 152 RRAADAIE----A-SGLEYTILRPAWLTDEDIIDY------------------------ELT-SR------NEPFKGTIV 195 (236)
T ss_dssp HHHHHHHH----T-SCSEEEEEEECEEECCSCCCC------------------------EEE-CT------TSCCSCSEE
T ss_pred HHHHHHHH----H-CCCCEEEEeCCcccCCCCcce------------------------EEe-cc------CCCCCCcEE
Confidence 45555543 2 389999999999998631100 000 00 001113589
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+++|+|+++++++.... ...+++|++++++.
T Consensus 196 ~~~DvA~~i~~ll~~~~--~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 196 SRKSVAALITDIIDKPE--KHIGENIGINQPGT 226 (236)
T ss_dssp EHHHHHHHHHHHHHSTT--TTTTEEEEEECSSC
T ss_pred CHHHHHHHHHHHHcCcc--cccCeeEEecCCCC
Confidence 99999999999998722 25689999988763
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=191.45 Aligned_cols=231 Identities=18% Similarity=0.135 Sum_probs=163.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.. ....+.+... +.++.++.+|++|.+++.++++..
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH----GVKAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTT----SCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhc----CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998765 2233333221 346788999999999999888632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++ ++.+.++||++||...+. +..
T Consensus 78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 146 (255)
T 2q2v_A 78 GGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLV-----------GST 146 (255)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhcc-----------CCC
Confidence 5999999999754322 23345678999999877776654 556677999999988763 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHH-HHHcCCCC--ceEEe-c
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVT-QVAVGRRP--ALTVF-G 222 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~-g 222 (347)
....|+.+|.+.+.+.+.++.+. .++++++++||.+++|. ...... ....+... ....+ .
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 212 (255)
T 2q2v_A 147 GKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPL--------------VQKQIDDRAANGGDPLQAQHDLLA 212 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHH--------------HHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcc--------------hhhhcccccccccchHHHHHHHHh
Confidence 45689999999999999988875 37999999999999861 011110 00000000 00000 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.......+++++|+|+++.+++.... ....+++|++.+|..
T Consensus 213 ------~~~p~~~~~~~~dvA~~~~~l~s~~~-~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 213 ------EKQPSLAFVTPEHLGELVLFLCSEAG-SQVRGAAWNVDGGWL 253 (255)
T ss_dssp ------TTCTTCCCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTGG
T ss_pred ------ccCCCCCCcCHHHHHHHHHHHhCCcc-CCCCCCEEEECCCcc
Confidence 11122358899999999999886522 235689999987753
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=193.64 Aligned_cols=223 Identities=18% Similarity=0.204 Sum_probs=164.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+........+.+ +.++.++.+|++|.+++.++++..
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-------GNNCVFAPADVTSEKDVQTALALAKGKF 84 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh-------CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 378999999999999999999999999999999877655444332 347889999999999999888632
Q ss_pred -CCcEEEEccccccCCc----------cccCcchhhhhhhhHHHHHHHHHHHc----------CCCeEEEeccccccCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----------SVQKPLPYFDNNLTGTITLLEVMAAH----------GCKNLVFSSSATAYGWP 136 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----------~~~~~~~~~~~nv~~~~~l~~~~~~~----------~~~~iv~~SS~~~yg~~ 136 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-- 162 (265)
T 2o23_A 85 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE-- 162 (265)
T ss_dssp SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH--
T ss_pred CCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC--
Confidence 6999999999754321 22345678899999999999987764 557999999988763
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCC
Q 040584 137 KVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGR 214 (347)
Q Consensus 137 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (347)
+..+...|+.+|.+.+.+++.++.+. .++++++++||.+.++.... .... ........
T Consensus 163 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~~~~---~~~~~~~~- 222 (265)
T 2o23_A 163 ---------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS-------LPEK---VCNFLASQ- 222 (265)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------------CHHHHT-
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc-------cCHH---HHHHHHHc-
Confidence 33456789999999999998887764 37999999999998762110 0000 00011110
Q ss_pred CCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 215 RPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.+ . ...+++.+|+|+++++++.+ +...++++++.+|..+
T Consensus 223 ---~~---------~---~~~~~~~~dva~~~~~l~~~---~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 223 ---VP---------F---PSRLGDPAEYAHLVQAIIEN---PFLNGEVIRLDGAIRM 261 (265)
T ss_dssp ---CS---------S---SCSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTCCC
T ss_pred ---CC---------C---cCCCCCHHHHHHHHHHHhhc---CccCceEEEECCCEec
Confidence 00 0 02367899999999999875 4567899999887644
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=196.24 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=168.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc------------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN------------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAA 69 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (347)
+|+++||||+|+||++++++|+++|++|++++|+.. ......+.+... +.++.++.+|++|.++
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI----GSRIVARQADVRDRES 88 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH----TCCEEEEECCTTCHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc----CCeEEEEeCCCCCHHH
Confidence 478999999999999999999999999999998732 222222222222 4588999999999999
Q ss_pred HHHHHccC-----CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCC
Q 040584 70 LEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 70 ~~~~~~~~-----~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~ 139 (347)
+.++++.. ++|+||||||........+.+...+++|+.++.++++++.. .+ .++||++||...+....
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 166 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG-- 166 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC--
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc--
Confidence 99888642 69999999998665445566778999999999999887643 23 46999999987753210
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCC
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRP 216 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 216 (347)
.+..+...|+.||.+.+.+++.++.++ .++++.+++||.+.+|.. ..... ..+........
T Consensus 167 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~----------~~~~~~~~~~~~~~~~~- 230 (278)
T 3sx2_A 167 -----SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMI----------NNEFTREWLAKMAAATD- 230 (278)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTT----------SSHHHHHHHHHHHHHCC-
T ss_pred -----cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccc----------hhhhHHHHHhhccchhh-
Confidence 112334679999999999999888775 379999999999998621 11111 12222111110
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....++ .... ..+++++|+|+++++++.... ....|+++++.+|.
T Consensus 231 ~~~~~~------~~~p-~~~~~p~dvA~~v~~l~s~~~-~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 231 TPGAMG------NAMP-VEVLAPEDVANAVAWLVSDQA-RYITGVTLPVDAGF 275 (278)
T ss_dssp --CTTS------CSSS-CSSBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTT
T ss_pred hhhhhh------hhcC-cCcCCHHHHHHHHHHHhCccc-ccccCCEEeECCCc
Confidence 011111 1222 568899999999999887522 34678999998775
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=197.54 Aligned_cols=229 Identities=17% Similarity=0.115 Sum_probs=170.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+... ...++.++.+|++|.+++.++++..
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGEL---GAGNVIGVRLDVSDPGSCADAARTVVDAF 117 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS---SSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh---CCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999887776655555432 1247889999999999988887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||...+. .+..
T Consensus 118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~----------~~~~ 187 (293)
T 3rih_A 118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV----------TGYP 187 (293)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT----------BBCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc----------CCCC
Confidence 6899999999765432 33455678999999999998886 355667999999986531 1233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.||.+.+.+++.++.++ .++++.+++||.+++|... .....+........ +
T Consensus 188 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~----------~~~~~~~~~~~~~~--p--------- 246 (293)
T 3rih_A 188 GWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLV----------DMGEEYISGMARSI--P--------- 246 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHH----------HTCHHHHHHHHTTS--T---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchh----------hccHHHHHHHHhcC--C---------
Confidence 55789999999999999888774 3899999999999986200 00111222222211 1
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
...+...+|+|+++.+++... .....|+++++.+|..+
T Consensus 247 ------~~r~~~p~dvA~~v~fL~s~~-a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 247 ------MGMLGSPVDIGHLAAFLATDE-AGYITGQAIVVDGGQVL 284 (293)
T ss_dssp ------TSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTTC
T ss_pred ------CCCCCCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCccC
Confidence 112567899999999998752 23467899999888654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=195.04 Aligned_cols=231 Identities=16% Similarity=0.112 Sum_probs=170.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 9 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999765544433332 247889999999999998877532
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
++|+||||||...... +.+.+...+++|+.++.++++++... ..++||++||...+. +..+..
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~ 150 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG-----------GHPGMS 150 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS-----------BCTTBH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC-----------CCCCch
Confidence 6999999999765433 33455678999999999999998764 234899999988763 334567
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHH-HHHHcCCCCceEEecccCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFV-TQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 228 (347)
.|+.||.+.+.+.+.++.++ .++++.+++||.+..|.... ........... .......
T Consensus 151 ~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~~~~~~~~~~~~~~~~~~-------------- 211 (255)
T 4eso_A 151 VYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGV-----AGITEAERAEFKTLGDNIT-------------- 211 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTC-----TTSCHHHHHHHHHHHHHHS--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCccccc-----ccCChhhHHHHHHHHhccC--------------
Confidence 89999999999999988875 37999999999999863111 01111111111 1111110
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
....+.+.+|+|+++++++.. .....|+++++.+|...++.+
T Consensus 212 ---p~~r~~~pedvA~~v~~L~s~--~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 212 ---PMKRNGTADEVARAVLFLAFE--ATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHHT--CTTCCSCEEEESTTTTTTBCC
T ss_pred ---CCCCCcCHHHHHHHHHHHcCc--CcCccCCEEEECCCccccCcC
Confidence 112356899999999998875 335678999999887766543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=193.80 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=161.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+ ..++.++.+|++|.+++.++++..
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-------ADAARYVHLDVTQPAQWKAAVDTAVTAF 79 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-------GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------hcCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999998765444332222 124778899999999999888632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.+++++ +++.+.++||++||...+. +..
T Consensus 80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 148 (260)
T 1nff_A 80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA-----------GTV 148 (260)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcC-----------CCC
Confidence 5999999999754322 2334567899999999766554 4455677999999998763 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|.+.+.+++.++.+. .+++++++|||.++++... .. .. .+. .
T Consensus 149 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--------~~------------~~--~~~--~---- 200 (260)
T 1nff_A 149 ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--------WV------------PE--DIF--Q---- 200 (260)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--------TS------------CT--TCS--C----
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--------cc------------hh--hHH--h----
Confidence 45689999999999999887763 3899999999999987310 00 00 000 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.....+++++|+|+++.+++.... ....+++|++.+|...
T Consensus 201 ----~~~~~~~~~~dvA~~v~~l~s~~~-~~~~G~~~~v~gG~~~ 240 (260)
T 1nff_A 201 ----TALGRAAEPVEVSNLVVYLASDES-SYSTGAEFVVDGGTVA 240 (260)
T ss_dssp ----CSSSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGG
T ss_pred ----CccCCCCCHHHHHHHHHHHhCccc-cCCcCCEEEECCCeec
Confidence 011236789999999999987522 2356799999887643
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=191.72 Aligned_cols=229 Identities=16% Similarity=0.144 Sum_probs=162.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+... ....+.+ . . .++.+|++|.+++.++++..
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~-------~-~-~~~~~D~~~~~~~~~~~~~~~~~~ 75 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI-------G-G-AFFQVDLEDERERVRFVEEAAYAL 75 (256)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH-------T-C-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh-------h-C-CEEEeeCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999998765 4333322 1 3 67899999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 76 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~ 144 (256)
T 2d1y_A 76 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF-----------AEQ 144 (256)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS-----------BCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC-----------CCC
Confidence 6899999999764332 2234467889999999999887653 4567999999987652 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.||.+.+.+++.++.+. .++++++++||.+.++. ....+....... .....+.
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~--------------~~~~~~~~~~~~-~~~~~~~---- 205 (256)
T 2d1y_A 145 ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA--------------VLEAIALSPDPE-RTRRDWE---- 205 (256)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH--------------HHHHHC---------CHHHH----
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch--------------hhhccccccCCH-HHHHHHH----
Confidence 45689999999999999888764 37999999999887641 000100000000 0000000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
.......+++++|+|+++++++.... ....+++|++.+|...+.
T Consensus 206 --~~~~~~~~~~~~dvA~~~~~l~s~~~-~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 206 --DLHALRRLGKPEEVAEAVLFLASEKA-SFITGAILPVDGGMTASF 249 (256)
T ss_dssp --TTSTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGBC
T ss_pred --hcCCCCCCcCHHHHHHHHHHHhCchh-cCCCCCEEEECCCccccc
Confidence 11123458899999999999987622 235678999988876554
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=199.10 Aligned_cols=226 Identities=14% Similarity=0.062 Sum_probs=168.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++..+.+|++|.+++.++++..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA----GLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH----TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999876665555555443 347788999999999999887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 172 (270)
T 3ftp_A 104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA-----------GNP 172 (270)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------CCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC-----------CCC
Confidence 6999999999765432 334556789999999999988765 33456999999987752 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.||.+.+.+.+.++.++ .++++.+++||.+..+.. ..+.. ....... .
T Consensus 173 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~-----------~~~~~~~~~~~~~-~----------- 229 (270)
T 3ftp_A 173 GQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMT-----------KGLPQEQQTALKT-Q----------- 229 (270)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHH-----------HHSCHHHHHHHHT-T-----------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcch-----------hhcCHHHHHHHHh-c-----------
Confidence 55789999999999999888774 379999999999887510 00111 1111111 1
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.....+.+.+|+|+++.+++... .....|+++++.+|..+
T Consensus 230 -----~p~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 230 -----IPLGRLGSPEDIAHAVAFLASPQ-AGYITGTTLHVNGGMFM 269 (270)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSSC
T ss_pred -----CCCCCCCCHHHHHHHHHHHhCCC-cCCccCcEEEECCCccc
Confidence 11224678999999999988642 23467899999888654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=194.95 Aligned_cols=227 Identities=14% Similarity=0.132 Sum_probs=165.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC-CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL-DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+ ....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD----GGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998 55555444444332 347889999999999999888632
Q ss_pred --CCcEEEEcccc-ccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC--C---CeEEEeccccccCCCCCCCC
Q 040584 78 --KFDAVIHFAGL-KAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG--C---KNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 78 --~~d~vih~a~~-~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~--~---~~iv~~SS~~~yg~~~~~~~ 141 (347)
++|+|||+||. ..... ..+.+...+++|+.++.++++++.. .+ . ++||++||...+..
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------ 156 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG------ 156 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC------
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC------
Confidence 59999999996 33222 2233456889999999998886542 22 2 69999999877631
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
+..+...|+.+|.+.|.+++.++.+. .+++++++|||.++++... . ....+...+..+.
T Consensus 157 ----~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~-------~---~~~~~~~~~~~~~----- 217 (258)
T 3afn_B 157 ----GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHA-------D---KTQDVRDRISNGI----- 217 (258)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGT-------T---CCHHHHHHHHTTC-----
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccc-------c---cCHHHHHHHhccC-----
Confidence 23356789999999999999887664 3799999999999987311 0 0112233333221
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++.+++.........+++|++++|.
T Consensus 218 ------------~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 218 ------------PMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp ------------TTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred ------------CCCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 12247899999999999887521103467999998775
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-26 Score=194.99 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=160.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEE-EecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTF-HKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~d~~~~~~~~~~~-- 77 (347)
||+|+||||+|+||++++++|+++|++|+++ +|+....+...+.+... +.++.. +.+|++|.+++.+++++.
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR----GSPLVAVLGANLLEAEAATALVHQAAE 76 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT----TCSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----CCceEEEEeccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999988 77655544443433332 345666 899999999998886531
Q ss_pred ---CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||...... ..+.+...+++|+.++.++++ .+++.+.++||++||...+. +
T Consensus 77 ~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~ 145 (245)
T 2ph3_A 77 VLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGIL-----------G 145 (245)
T ss_dssp HHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------C
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhcc-----------C
Confidence 6999999999754322 233456788999999665554 45556778999999986542 2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
..+...|+.+|.+.+.+++.++.+. .+++++++|||.++++... .. ............
T Consensus 146 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-------~~---~~~~~~~~~~~~---------- 205 (245)
T 2ph3_A 146 NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTE-------RL---PQEVKEAYLKQI---------- 205 (245)
T ss_dssp CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-------TS---CHHHHHHHHHTC----------
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchh-------hc---CHHHHHHHHhcC----------
Confidence 2345689999999999998887764 3799999999999986210 00 011222222211
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++..++.... ....+++|++.+|.
T Consensus 206 -------~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 206 -------PAGRFGRPEEVAEAVAFLVSEKA-GYITGQTLCVDGGL 242 (245)
T ss_dssp -------TTCSCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTC
T ss_pred -------CCCCCcCHHHHHHHHHHHhCccc-ccccCCEEEECCCC
Confidence 11247899999999999887521 23467899998764
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=194.16 Aligned_cols=231 Identities=17% Similarity=0.076 Sum_probs=166.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-------GCGAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------CSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-------CCcceEEEecCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999998766554433332 357889999999999998887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 102 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-----------~~~ 170 (277)
T 3gvc_A 102 GGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV-----------AVG 170 (277)
T ss_dssp SSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc-----------CCC
Confidence 6999999999764432 3345667899999999999887654 4556999999987752 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE-EecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT-VFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 225 (347)
+...|+.||.+.+.+++.++.+. .++++.+++||.+++|. ............. ......
T Consensus 171 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~------------------~~~~~~~~~~~~~~~~~~~~ 232 (277)
T 3gvc_A 171 GTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPM------------------QQTAMAMFDGALGAGGARSM 232 (277)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH------------------HHHHHTCC------CCHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCch------------------HHHhhhcchhhHHHHhhhhh
Confidence 56789999999999999888774 37999999999998761 1111100000000 000000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.......+.+.+|+|+++++++.... ....|+++++.+|...+
T Consensus 233 ---~~~~~~r~~~pedvA~~v~~L~s~~a-~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 233 ---IARLQGRMAAPEEMAGIVVFLLSDDA-SMITGTTQIADGGTIAA 275 (277)
T ss_dssp ---HHHHHSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGS
T ss_pred ---hhccccCCCCHHHHHHHHHHHcCCcc-CCccCcEEEECCcchhc
Confidence 00112246789999999999997522 34678999998886544
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-25 Score=191.20 Aligned_cols=224 Identities=15% Similarity=0.061 Sum_probs=163.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC-CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+|+||||+|+||++++++|+++|++|++++| +....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV----GGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999999999999998 544443333444332 346788999999999998887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+ .++||++||...+. +.
T Consensus 84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~ 152 (261)
T 1gee_A 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-----------PW 152 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------CC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-----------CC
Confidence 6999999999754322 2334567889999999988777554 34 56999999987652 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH--H-HHHHHHcCCCCceEEec
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM--P-FVTQVAVGRRPALTVFG 222 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g 222 (347)
.+...|+.+|.+.+.+++.++.+. .+++++++|||.+++|.. .... + ....+...
T Consensus 153 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-----------~~~~~~~~~~~~~~~~--------- 212 (261)
T 1gee_A 153 PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPIN-----------AEKFADPEQRADVESM--------- 212 (261)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGG-----------HHHHHSHHHHHHHHTT---------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchh-----------hhcccChhHHHHHHhc---------
Confidence 566789999999999998887664 379999999999998620 0010 1 11111111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....+++++|+|+++++++.... ....++++++.++..
T Consensus 213 --------~~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 213 --------IPMGYIGEPEEIAAVAAWLASSEA-SYVTGITLFADGGMT 251 (261)
T ss_dssp --------CTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGG
T ss_pred --------CCCCCCcCHHHHHHHHHHHhCccc-cCCCCcEEEEcCCcc
Confidence 011247899999999999986522 235678999988754
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=192.29 Aligned_cols=232 Identities=14% Similarity=0.086 Sum_probs=164.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++.
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999866554444444332 34788899999999999888742
Q ss_pred -CCCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 -TKFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~ 165 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS-----------AL 165 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-----------CC
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcC-----------CC
Confidence 26999999999754332 233456688899999999988764 44567999999998874 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.+|.+.+.+.+.++.+. .++++++++||.+++|...... ..... ............
T Consensus 166 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~-~~~~~~~~~~~~----------- 230 (273)
T 1ae1_A 166 PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAI---KKNPH-QKEEIDNFIVKT----------- 230 (273)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-----------------CHHHHHHHHHHS-----------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhh---hcccC-cHHHHHHHHhcC-----------
Confidence 455789999999999999887764 3899999999999987311100 00000 011112221110
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+.+.+|+|+++.+++... .....++++++.+|..
T Consensus 231 ------p~~r~~~p~dvA~~v~~l~s~~-~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 231 ------PMGRAGKPQEVSALIAFLCFPA-ASYITGQIIWADGGFT 268 (273)
T ss_dssp ------TTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGG
T ss_pred ------CCCCCcCHHHHHHHHHHHhCcc-ccCcCCCEEEECCCcc
Confidence 0113678999999999988652 2235789999987754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=196.15 Aligned_cols=235 Identities=14% Similarity=0.063 Sum_probs=167.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA----GHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999876665555554432 457889999999999998887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH------cCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA------HGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~------~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +
T Consensus 100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~-----------~ 168 (279)
T 3sju_A 100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ-----------G 168 (279)
T ss_dssp CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS-----------C
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc-----------C
Confidence 6899999999765433 2234556788999999999987654 4567999999988762 3
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 223 (347)
......|+.||.+.+.+++.++.+. .++++.+++||.+.+|.................+ .......
T Consensus 169 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 237 (279)
T 3sju_A 169 VMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA----------- 237 (279)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT-----------
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh-----------
Confidence 4456789999999999999988874 3799999999998875100000000000000011 1111111
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+.+++|+|+++.+++.... ....|+++++.+|.
T Consensus 238 ------~~p~~r~~~pedvA~~v~~L~s~~a-~~itG~~i~vdGG~ 276 (279)
T 3sju_A 238 ------KIPLGRYSTPEEVAGLVGYLVTDAA-ASITAQALNVCGGL 276 (279)
T ss_dssp ------TCTTSSCBCHHHHHHHHHHHTSSGG-GGCCSCEEEESTTC
T ss_pred ------cCCCCCCCCHHHHHHHHHHHhCccc-cCcCCcEEEECCCc
Confidence 1112346789999999999887521 23678999998775
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=191.34 Aligned_cols=221 Identities=13% Similarity=0.044 Sum_probs=165.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+. .....+.+|++|.+++.++++..
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-------DNGKGMALNVTNPESIEAVLKAITDEFG 82 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-------ccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999999988665544443332 25678899999999999888643
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... +.+++...+++|+.++.++++++.. .+.++||++||...+. +..+
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~~ 151 (248)
T 3op4_A 83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM-----------GNAG 151 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------CCTT
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC-----------CCCC
Confidence 6999999999765432 3345567899999999999887653 4567999999987652 3445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.||.+.+.+.+.++.++ .++++.+++||.+..+.. ..+.+ .........
T Consensus 152 ~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~-----------~~~~~~~~~~~~~~~------------ 208 (248)
T 3op4_A 152 QANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMT-----------KALNDEQRTATLAQV------------ 208 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTT-----------TTSCHHHHHHHHHTC------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchh-----------hhcCHHHHHHHHhcC------------
Confidence 6789999999999999888764 379999999999987621 11111 222222211
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+.+++|+|+++.+++... .....|+++++.+|..
T Consensus 209 -----p~~r~~~p~dva~~v~~L~s~~-~~~itG~~i~vdgG~~ 246 (248)
T 3op4_A 209 -----PAGRLGDPREIASAVAFLASPE-AAYITGETLHVNGGMY 246 (248)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSS
T ss_pred -----CCCCCcCHHHHHHHHHHHcCCc-cCCccCcEEEECCCee
Confidence 1123678999999999988752 2345789999987753
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=188.89 Aligned_cols=232 Identities=16% Similarity=0.098 Sum_probs=165.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
|+|+++||||+|+||++++++|+++| +.|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (254)
T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY-------GDRFFYVVGDITEDSVLKQLVNAAV 73 (254)
T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH-------GGGEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh-------CCceEEEECCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999985 78888888765544433332 247889999999999999888643
Q ss_pred ----CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ----KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ----~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||.... . .+.+++...+++|+.++.++++++ ++.+ ++||++||...+.
T Consensus 74 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~---------- 142 (254)
T 3kzv_A 74 KGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNM---------- 142 (254)
T ss_dssp HHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCC----------
T ss_pred HhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhcc----------
Confidence 69999999997432 1 133455678999999999998887 4444 6999999987752
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecc
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 223 (347)
+..+...|+.||.+.+.+.+.++.+..++++.+++||.+..+-......... .....+ ........
T Consensus 143 -~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~--~~~~~~~~~~~~~~~---------- 209 (254)
T 3kzv_A 143 -YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVG--PSSMSAEQLKMFRGL---------- 209 (254)
T ss_dssp -SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCC--TTTSCHHHHHHHHHH----------
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccC--ccccCHHHHHHHHHH----------
Confidence 3445678999999999999999988779999999999998874322211100 000111 22222111
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....+.+.+|+|+++++++.........|+.+++.+++.
T Consensus 210 -------~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 210 -------KENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPAL 249 (254)
T ss_dssp -------HTTC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGG
T ss_pred -------HhcCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCccc
Confidence 0112367899999999999987321236789999877653
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=195.42 Aligned_cols=221 Identities=17% Similarity=0.094 Sum_probs=161.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+. + ..++.++.+|++|.+++.++++..
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~----~~~~~~~~~D~~d~~~v~~~~~~~~~~~g 85 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAG---L----ENGGFAVEVDVTKRASVDAAMQKAIDALG 85 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---C----TTCCEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---H----hcCCeEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999875443322211 1 126778999999999999888632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+ .++||++||...+. +..
T Consensus 86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 154 (263)
T 3ak4_A 86 GFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV-----------GAP 154 (263)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------CCT
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc-----------CCC
Confidence 5999999999754332 2334567889999999999887654 34 57999999987752 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH-----------H-HHHHHHcCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-----------P-FVTQVAVGR 214 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~ 214 (347)
+...|+.+|.+.+.+++.++.+. .+++++++|||.+++|.. .... + ........
T Consensus 155 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~- 222 (263)
T 3ak4_A 155 LLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQ-----------EREIIWEAELRGMTPEAVRAEYVSL- 222 (263)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHH-----------HHHHHHHHHHHTSCHHHHHHHHHHT-
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhh-----------hhhccccccccccCcHHHHHHHHhc-
Confidence 45789999999999999887764 389999999999998610 0000 0 01111110
Q ss_pred CCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 215 RPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....+++++|+|+++++++.... ....+++|++.+|..
T Consensus 223 ----------------~p~~~~~~~~dvA~~v~~l~s~~~-~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 223 ----------------TPLGRIEEPEDVADVVVFLASDAA-RFMTGQGINVTGGVR 261 (263)
T ss_dssp ----------------CTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESSSSS
T ss_pred ----------------CCCCCCcCHHHHHHHHHHHhCccc-cCCCCCEEEECcCEe
Confidence 112347899999999999987522 235778999988754
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=189.31 Aligned_cols=219 Identities=12% Similarity=0.052 Sum_probs=161.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.... +... ++.++.+|++|.+++.++++..
T Consensus 27 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~---~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 27 SAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTE---LRQA------GAVALYGDFSCETGIMAFIDLLKTQT 97 (260)
T ss_dssp CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHH---HHHH------TCEEEECCTTSHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH---HHhc------CCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999987654322 2222 4788999999999999888642
Q ss_pred -CCcEEEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +..+
T Consensus 98 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~~ 166 (260)
T 3gem_A 98 SSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK-----------GSSK 166 (260)
T ss_dssp SCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT-----------CCSS
T ss_pred CCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC-----------CCCC
Confidence 6999999999754322 2234456899999999999887654 3557999999988762 3445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
...|+.||.+.+.+++.++.++ +++++.+++||.+..+.. .. ..........
T Consensus 167 ~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~-----~~-------~~~~~~~~~~--------------- 219 (260)
T 3gem_A 167 HIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPK-----DD-------AAYRANALAK--------------- 219 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCC-----CC-------HHHHHHHHhc---------------
Confidence 6789999999999999998886 459999999999987521 00 0011111110
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
....-+..++|+|++++++++. +...|++|++.+|..++
T Consensus 220 --~p~~r~~~~edva~~v~~L~~~---~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 220 --SALGIEPGAEVIYQSLRYLLDS---TYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp --CCSCCCCCTHHHHHHHHHHHHC---SSCCSCEEEESTTTTTC
T ss_pred --CCCCCCCCHHHHHHHHHHHhhC---CCCCCCEEEECCCcccC
Confidence 1111245689999999999854 45788999998887654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=192.40 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=166.2
Q ss_pred CceEEEEcCCC-cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVG-YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG-~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+| .||++++++|+++|++|++++|+........+.+... ...++.++.+|++|.+++.++++..
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL---GLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT---CSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc---CCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 37899999998 5999999999999999999999877665555554332 2357899999999999999888643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc-----CCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH-----GCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~-----~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+. +
T Consensus 99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------~ 167 (266)
T 3o38_A 99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR-----------A 167 (266)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC-----------C
T ss_pred hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC-----------C
Confidence 6899999999755433 23345668999999999998887653 456899999987752 4
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
..+...|+.+|.+.+.+++.++.+. .++++.+++||.+..+..... . .........
T Consensus 168 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------~--~~~~~~~~~------------- 225 (266)
T 3o38_A 168 QHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKT-------S--SSELLDRLA------------- 225 (266)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--------------------------------------
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhcc-------C--cHHHHHHHH-------------
Confidence 4566789999999999999888773 379999999999887521000 0 000011110
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+.+.+|+|+++++++.... ....|+++++.+|.
T Consensus 226 ----~~~~~~r~~~~~dva~~i~~l~s~~~-~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 226 ----SDEAFGRAAEPWEVAATIAFLASDYS-SYMTGEVVSVSSQR 265 (266)
T ss_dssp -----CCTTSSCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESSCC
T ss_pred ----hcCCcCCCCCHHHHHHHHHHHcCccc-cCccCCEEEEcCCc
Confidence 11223347899999999999987622 34678999998774
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=194.74 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=162.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||+++++.|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc----CCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999888755544444443322 347888999999999999887532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~ 188 (285)
T 2c07_A 120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-----------GNV 188 (285)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------CCT
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc-----------CCC
Confidence 6999999999764322 233456789999999888877654 44667999999987652 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
+...|+.+|.+.+.+++.++.+. .++++++++||.+.++... .+.+ .........
T Consensus 189 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~~~~~----------- 246 (285)
T 2c07_A 189 GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD-----------KISEQIKKNIISNI----------- 246 (285)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------CCHHHHHHHHTTC-----------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchh-----------hcCHHHHHHHHhhC-----------
Confidence 45689999999999998887664 3799999999999886210 1111 222222110
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++++++.... ....+++|++.+|.
T Consensus 247 ------~~~~~~~~~dvA~~~~~l~~~~~-~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 247 ------PAGRMGTPEEVANLACFLSSDKS-GYINGRVFVIDGGL 283 (285)
T ss_dssp ------TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTS
T ss_pred ------CCCCCCCHHHHHHHHHHHhCCCc-CCCCCCEEEeCCCc
Confidence 01137899999999999987522 23567899998774
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-25 Score=191.30 Aligned_cols=232 Identities=13% Similarity=0.110 Sum_probs=168.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT----GRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999999876666555555443 457889999999999998887643
Q ss_pred -CCcEEEEcccccc-CCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKA-VGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~-~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||... ... +.+.+...+++|+.++.++++++.. .+ ++||++||...+. +.
T Consensus 87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~-----------~~ 154 (264)
T 3ucx_A 87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRH-----------SQ 154 (264)
T ss_dssp SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGC-----------CC
T ss_pred CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhcc-----------CC
Confidence 6999999998642 211 2345567899999999999887543 33 6999999988762 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH--cCCC--CceEEe
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA--VGRR--PALTVF 221 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~ 221 (347)
.....|+.||.+.+.+++.++.++ .++++.+++||.+++|. ...+..... .+.. .....+
T Consensus 155 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 220 (264)
T 3ucx_A 155 AKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGT--------------LKSYFEHQAGKYGTSVEDIYNAA 220 (264)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHH--------------HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccccc--------------HHHHHHhhhhhcCCCHHHHHHHH
Confidence 456789999999999999888774 47999999999998861 111111000 0000 000000
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
. .......+.+++|+|+++++++.... ....|+++++.+|..
T Consensus 221 ~------~~~p~~r~~~p~dvA~~v~~L~s~~~-~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 221 A------AGSDLKRLPTEDEVASAILFMASDLA-SGITGQALDVNCGEY 262 (264)
T ss_dssp H------TTSSSSSCCBHHHHHHHHHHHHSGGG-TTCCSCEEEESTTSS
T ss_pred h------ccCCcccCCCHHHHHHHHHHHcCccc-cCCCCCEEEECCCcc
Confidence 0 11223357899999999999987522 346789999988864
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=187.84 Aligned_cols=225 Identities=13% Similarity=0.057 Sum_probs=160.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCe-EEEecCCCCHHHHHHHHcc----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNM-TFHKLDLRDKAALEVVFAG----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~----~ 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++ .++.+|++|.+++.++++. .
T Consensus 12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL-------GAAVAARIVADVTDAEAMTAAAAEAEAVA 84 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------GGGEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------cccceeEEEEecCCHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999765444333332 1245 7889999999999888753 2
Q ss_pred CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||+||....... .+.+...+++|+.++.++++++ ++.+.++||++||...+... +..+
T Consensus 85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------~~~~ 155 (254)
T 2wsb_A 85 PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN---------RPQF 155 (254)
T ss_dssp CCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------SSSC
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC---------CCCc
Confidence 69999999997544322 2234568889999987776654 44567899999998876321 2233
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.|.+++.++.+. .+++++++|||.++++..... . ........+....
T Consensus 156 ~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-------~-~~~~~~~~~~~~~------------- 214 (254)
T 2wsb_A 156 ASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-------R-ERPELFETWLDMT------------- 214 (254)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-------H-TCHHHHHHHHHTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-------c-cChHHHHHHHhcC-------------
Confidence 4789999999999999887764 379999999999998620000 0 0001122222211
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++++|+|+++.+++.... ....++++++.+|.
T Consensus 215 ----~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 215 ----PMGRCGEPSEIAAAALFLASPAA-SYVTGAILAVDGGY 251 (254)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTG
T ss_pred ----CCCCCCCHHHHHHHHHHHhCccc-ccccCCEEEECCCE
Confidence 11247899999999999986522 23567899997764
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=189.90 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=161.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
|+|+|+||||+|+||++++++|+++|+ +|++++|+....+...+.+.. .+.++.++.+|++|.+++.++
T Consensus 1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~ 76 (244)
T 2bd0_A 1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA----EGALTDTITADISDMADVRRL 76 (244)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT----TTCEEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc----cCCeeeEEEecCCCHHHHHHH
Confidence 578999999999999999999999999 999999876554443333322 234688899999999999888
Q ss_pred HccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCC
Q 040584 74 FAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVP 140 (347)
Q Consensus 74 ~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~ 140 (347)
++.. ++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+.
T Consensus 77 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------ 150 (244)
T 2bd0_A 77 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK------ 150 (244)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------
T ss_pred HHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC------
Confidence 7632 5999999999754322 2345567889999999999887643 4567999999998873
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCce
Q 040584 141 CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPAL 218 (347)
Q Consensus 141 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (347)
+..+...|+.+|.+++.+++.++.+. .+++++++|||.+++|..... . ..
T Consensus 151 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~-------------~~--- 202 (244)
T 2bd0_A 151 -----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV-------D-------------DE--- 202 (244)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC-------C-------------ST---
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc-------c-------------cc---
Confidence 33456789999999999998876653 479999999999998731100 0 00
Q ss_pred EEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 219 TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
. ...+++++|+|++++.++.... ....++++...+++.+
T Consensus 203 -----------~--~~~~~~~~dva~~~~~l~~~~~-~~~~g~~~~~~~~~~~ 241 (244)
T 2bd0_A 203 -----------M--QALMMMPEDIAAPVVQAYLQPS-RTVVEEIILRPTSGDI 241 (244)
T ss_dssp -----------T--GGGSBCHHHHHHHHHHHHTSCT-TEEEEEEEEEETTCCC
T ss_pred -----------c--cccCCCHHHHHHHHHHHHhCCc-cccchheEEecccccc
Confidence 0 1136789999999999997622 2234566666555544
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=191.75 Aligned_cols=237 Identities=13% Similarity=0.081 Sum_probs=163.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+... .+...+.+.... +.++.++.+|++|.+++.+++++.
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH---GVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH---TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc---CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999988765 444444443221 246788999999999998887632
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 149 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-----------AS 149 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc-----------CC
Confidence 6999999999754322 234456789999999999888764 34567999999988763 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe-ccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF-GTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 224 (347)
.+...|+.||.+.+.+++.++.++ .++++++++||.+.+|..... ..................+ .
T Consensus 150 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-- 217 (260)
T 1x1t_A 150 ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ----------ISALAEKNGVDQETAARELLS-- 217 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------------CHH--
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh----------hhhhccccCCchHHHHHHHhh--
Confidence 455789999999999999888764 379999999999998631100 0000000000000000000 0
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+.+.+|+|+++.+++.... ....+++|++.+|.
T Consensus 218 ----~~~p~~~~~~p~dva~~~~~l~s~~~-~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 218 ----EKQPSLQFVTPEQLGGTAVFLASDAA-AQITGTTVSVDGGW 257 (260)
T ss_dssp ----HHCTTCCCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTG
T ss_pred ----ccCCCCCCcCHHHHHHHHHHHhChhh-cCCCCCEEEECCCc
Confidence 00011347899999999999987522 24578999998774
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=188.37 Aligned_cols=225 Identities=18% Similarity=0.159 Sum_probs=154.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.... ..++..+.+|++|.+++.++++..
T Consensus 7 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 72 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE--------------QYPFATEVMDVADAAQVAQVCQRLLAET 72 (250)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS--------------CCSSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh--------------cCCceEEEcCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999876521 113778899999999999888632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+++...+++|+.++.++++++ ++.+.++||++||...+. +..
T Consensus 73 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~ 141 (250)
T 2fwm_X 73 ERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT-----------PRI 141 (250)
T ss_dssp SCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC-----------CCC
Confidence 6999999999754322 23455678999999999998877 445677999999998762 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHH-HHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVT-QVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 225 (347)
+...|+.+|.+.+.+++.++.+. .++++++++||.++++....... ... ... ...... ..+.
T Consensus 142 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-----~~~---~~~~~~~~~~-~~~~------ 206 (250)
T 2fwm_X 142 GMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-----SDD---AEEQRIRGFG-EQFK------ 206 (250)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc-----Chh---HHHHHHhhhh-hccc------
Confidence 56789999999999999887764 38999999999999873110000 000 000 000000 0000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.......+.+.+|+|+++.+++.... ....++++++.+|..
T Consensus 207 ---~~~p~~~~~~p~dvA~~v~~l~s~~~-~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 207 ---LGIPLGKIARPQEIANTILFLASDLA-SHITLQDIVVDGGST 247 (250)
T ss_dssp ------------CHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTT
T ss_pred ---ccCCCCCCcCHHHHHHHHHHHhCccc-cCCCCCEEEECCCcc
Confidence 00112247899999999999987622 245789999987754
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=194.06 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=154.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+. ...+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL----GARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT----TCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999998643 3333333444332 457899999999999988887643
Q ss_pred -CCcEEEEccccc--cCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C---CCeEEEeccccccCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLK--AVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G---CKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 -~~d~vih~a~~~--~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~---~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+||||||.. .... +.+.+...+++|+.++.++++++... + .++||++||...+.
T Consensus 106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 176 (280)
T 4da9_A 106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM--------- 176 (280)
T ss_dssp SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_pred CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc---------
Confidence 699999999973 2211 34456678999999999888876542 2 45899999987752
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHH-HHHHcCCCCceEE
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFV-TQVAVGRRPALTV 220 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 220 (347)
+......|+.||.+.+.+.+.++.+. .++++.+++||.+..+... .+.... .....+
T Consensus 177 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-----------~~~~~~~~~~~~~------- 236 (280)
T 4da9_A 177 --TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTA-----------AVSGKYDGLIESG------- 236 (280)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-----------------------------------
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchh-----------hcchhHHHHHhhc-------
Confidence 33455789999999999999988774 3799999999999876211 010000 000000
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
......+..++|+|+++.+++... .....|+++++.+|..+
T Consensus 237 ---------~~p~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~~~ 277 (280)
T 4da9_A 237 ---------LVPMRRWGEPEDIGNIVAGLAGGQ-FGFATGSVIQADGGLSI 277 (280)
T ss_dssp --------------CCBCHHHHHHHHHHHHTST-TGGGTTCEEEESTTCC-
T ss_pred ---------CCCcCCcCCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCccc
Confidence 112234678999999999998762 22357899999887543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=194.84 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=164.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA----GVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999866554444444332 346888999999999988887632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc------CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH------GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~------~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+. +.
T Consensus 99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~ 167 (277)
T 2rhc_B 99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ-----------GV 167 (277)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS-----------CC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc-----------CC
Confidence 5999999999754332 22345678899999999999886543 557999999987652 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc--CC--CCceEEe
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV--GR--RPALTVF 221 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~ 221 (347)
.+...|+.+|.+.+.+++.++.+. .++++++++||.+.++. .......... +. ......+
T Consensus 168 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 233 (277)
T 2rhc_B 168 VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM--------------AASVREHYSDIWEVSTEEAFDRI 233 (277)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHH--------------HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCch--------------hhhhhhhcccccccchHHHHHHH
Confidence 445789999999999999888764 37899999999998751 0011000000 00 0000000
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. .......+++++|+|+++++++.... ....+++|++.+|.
T Consensus 234 ~------~~~p~~r~~~~~dvA~~v~~l~s~~~-~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 234 T------ARVPIGRYVQPSEVAEMVAYLIGPGA-AAVTAQALNVCGGL 274 (277)
T ss_dssp H------HHSTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC
T ss_pred H------hcCCCCCCcCHHHHHHHHHHHhCchh-cCCCCcEEEECCCc
Confidence 0 00112347899999999999987522 24578999998774
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-25 Score=194.17 Aligned_cols=230 Identities=15% Similarity=0.080 Sum_probs=167.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.+...+.+ ..++.++.+|++|.+++.++++.. ++|
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~v~~~~~~~~~iD 88 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-------AGQVEVRELDLQDLSSVRRFADGVSGAD 88 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-------SSEEEEEECCTTCHHHHHHHHHTCCCEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------cCCeeEEEcCCCCHHHHHHHHHhcCCCC
Confidence 478999999999999999999999999999999865544332221 357889999999999999999865 689
Q ss_pred EEEEccccccCC--ccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC-CC-CCCCCCCCCCCCCchhhh
Q 040584 81 AVIHFAGLKAVG--ESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP-KV-VPCTEEFPLQAMNPYGRS 156 (347)
Q Consensus 81 ~vih~a~~~~~~--~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~-~~-~~~~e~~~~~~~~~Y~~s 156 (347)
+||||||..... .+.+.++..+++|+.++.++++++.....+|||++||...+... .. ....+..+..+...|+.|
T Consensus 89 ~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 168 (291)
T 3rd5_A 89 VLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQS 168 (291)
T ss_dssp EEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHH
T ss_pred EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHHHH
Confidence 999999975432 24567788999999999999999988766799999998877432 11 122233445566789999
Q ss_pred HHHHHHHHHHHhhhc--CC--ceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 157 KLFIEEICRDVHRSD--SE--WKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 157 K~~~e~~~~~~~~~~--~~--~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
|.+.+.+++.++.++ .+ +++.+++||.+..+-... ........... . -.
T Consensus 169 K~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~-----------~~~~~~~~~~~----~------------~~ 221 (291)
T 3rd5_A 169 KLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGA-----------SGRKLGDALMS----A------------AT 221 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccc-----------cchHHHHHHHH----H------------HH
Confidence 999999999888775 24 899999999998752110 00000000000 0 01
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.+-..+.+|+|+++++++.. +...|+.|++.+|
T Consensus 222 ~~~~~~~~~~A~~~~~l~~~---~~~~G~~~~vdgG 254 (291)
T 3rd5_A 222 RVVATDADFGARQTLYAASQ---DLPGDSFVGPRFG 254 (291)
T ss_dssp ---CHHHHHHHHHHHHHHHS---CCCTTCEEEETTS
T ss_pred HHHhCCHHHHHHHHHHHHcC---CCCCCceeCCccc
Confidence 11234589999999999987 3567788888654
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=192.70 Aligned_cols=233 Identities=14% Similarity=0.086 Sum_probs=166.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+........+.+... .+.++.++.+|++|.+++.++++..
T Consensus 14 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE---FGVKTKAYQCDVSNTDIVTKTIQQIDADL 90 (265)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH---HTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHh---cCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999766554434443322 1357889999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++... + .++||++||...+..... ...+.
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~~~~ 166 (265)
T 1h5q_A 91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SLNGS 166 (265)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ETTEE
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----ccccc
Confidence 4999999999754332 23345567899999999998887543 3 369999999877532110 01223
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.+...|+.+|.+.+.+++.++.+. .+++++++|||.++++... .+.+ .........
T Consensus 167 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~~~~~---------- 225 (265)
T 1h5q_A 167 LTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA-----------HMDKKIRDHQASNI---------- 225 (265)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG-----------GSCHHHHHHHHHTC----------
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccc-----------ccchhHHHHHHhcC----------
Confidence 346789999999999999887764 3799999999999986310 1111 222222111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+++++|+|+++.+++.... ....+++|++.+|..
T Consensus 226 -------~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 226 -------PLNRFAQPEEMTGQAILLLSDHA-TYMTGGEYFIDGGQL 263 (265)
T ss_dssp -------TTSSCBCGGGGHHHHHHHHSGGG-TTCCSCEEEECTTGG
T ss_pred -------cccCCCCHHHHHHHHHhhccCch-hcCcCcEEEecCCEe
Confidence 11236799999999999987522 235789999988753
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-25 Score=192.32 Aligned_cols=237 Identities=18% Similarity=0.138 Sum_probs=165.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+.... .+.++.++.+|++|.+++.++++..
T Consensus 13 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 90 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA--PDAEVLTTVADVSDEAQVEAYVTATTERF 90 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC--TTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999998665554444443321 1346888999999999999887642
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||.... .. ..+.++..+++|+.++..++++ +++.+.++||++||...+. +.
T Consensus 91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 159 (267)
T 1iy8_A 91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR-----------GI 159 (267)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------BC
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc-----------CC
Confidence 68999999997543 21 2344567889999998876554 4455677999999987752 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.+...|+.+|.+.+.+.+.++.+. .++++++++||.++++....... .. ...... ........
T Consensus 160 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~-~~~~~~~~~~~~~~~----------- 225 (267)
T 1iy8_A 160 GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMK--QL-DPENPRKAAEEFIQV----------- 225 (267)
T ss_dssp SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHH--HH-CTTCHHHHHHHHHTT-----------
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhcccc--cc-ChhhhhhHHHHHhcc-----------
Confidence 445789999999999999887764 37999999999998751000000 00 000000 00011110
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+.+.+|+|+++.+++.... ....++++++.+|...+
T Consensus 226 ------~p~~r~~~~~dvA~~v~~l~s~~~-~~~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 226 ------NPSKRYGEAPEIAAVVAFLLSDDA-SYVNATVVPIDGGQSAA 266 (267)
T ss_dssp ------CTTCSCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTTTTB
T ss_pred ------CCCCCCcCHHHHHHHHHHHcCccc-cCCCCCEEEECCCcccC
Confidence 011236799999999999886522 24578999998886543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=198.38 Aligned_cols=233 Identities=15% Similarity=0.089 Sum_probs=169.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+... .+.++.++.+|++|.+++.++++..
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGA---TGRRCLPLSMDVRAPPAVMAAVDQALKEF 103 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH---HSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999876655554444332 2457889999999999998887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 104 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 172 (277)
T 4fc7_A 104 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR-----------GQA 172 (277)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH-----------TCT
T ss_pred CCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC-----------CCC
Confidence 6999999999654322 3345667899999999999988743 3456999999987752 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.||.+.+.+++.++.++ .++++.+++||.+.++... .. ...............
T Consensus 173 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~------~~-~~~~~~~~~~~~~~~------------ 233 (277)
T 4fc7_A 173 LQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGL------RR-LGGPQASLSTKVTAS------------ 233 (277)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHH------HH-HSCCHHHHHHHHHTS------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhh------hh-ccCCHHHHHHHhccC------------
Confidence 45789999999999999888775 3799999999999875100 00 000011122222111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
....+...+|+|+++.+++... .....|+++++.+|..+++
T Consensus 234 -----p~~r~~~p~dvA~~v~fL~s~~-~~~itG~~i~vdGG~~~~~ 274 (277)
T 4fc7_A 234 -----PLQRLGNKTEIAHSVLYLASPL-ASYVTGAVLVADGGAWLTF 274 (277)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTHHHHC
T ss_pred -----CCCCCcCHHHHHHHHHHHcCCc-cCCcCCCEEEECCCcccCC
Confidence 1123678999999999999752 2346789999988865543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=191.02 Aligned_cols=209 Identities=18% Similarity=0.187 Sum_probs=161.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+|+||||+|+||++++++|+++|++|++++|+..... -..+.+|++|.+++.++++..
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~d~~d~~~v~~~~~~~~~~ 84 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA----------------DHSFTIKDSGEEEIKSVIEKINSK 84 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS----------------SEEEECSCSSHHHHHHHHHHHHTT
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc----------------ccceEEEeCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999876432 245788999999998887643
Q ss_pred --CCcEEEEccccccCC-----ccccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVG-----ESVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||..... ...+.+...+++|+.++.++++++...- -++||++||...+. +..
T Consensus 85 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 153 (251)
T 3orf_A 85 SIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN-----------RTS 153 (251)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------CCT
T ss_pred cCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc-----------CCC
Confidence 589999999965322 2234556788999999999999987642 24899999988762 445
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
+...|+.+|.+.+.+++.++.++ .++++.+++||.+..+ +......
T Consensus 154 ~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~------------------~~~~~~~------------ 203 (251)
T 3orf_A 154 GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP------------------TNRKYMS------------ 203 (251)
T ss_dssp TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH------------------HHHHHCT------------
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc------------------chhhhcc------------
Confidence 56789999999999999998883 4899999999988764 2222111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
......+++++|+|+++++++..+......|+++++.+++..
T Consensus 204 -----~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 204 -----DANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp -----TSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETTE
T ss_pred -----cccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecCCcc
Confidence 112234788999999999999862233467899999776643
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=192.92 Aligned_cols=233 Identities=18% Similarity=0.121 Sum_probs=170.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 9 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 9 KIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG----GGGEAAALAGDVGDEALHEALVELAVRRFG 84 (280)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT----TTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999887665554444432 2457888999999999999887642
Q ss_pred CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||.... . .+.+.+...+++|+.++.++++++.. .+.++||++||...+. .+..
T Consensus 85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------~~~~ 154 (280)
T 3tox_A 85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHT----------AGFA 154 (280)
T ss_dssp CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTT----------BCCT
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCc----------CCCC
Confidence 69999999996532 1 23345667899999999999887653 3456999999987752 1334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.||.+.+.+++.++.++ .++++.+++||.+.+|..... .............. ..
T Consensus 155 ~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~------~~~~~~~~~~~~~~-~~----------- 216 (280)
T 3tox_A 155 GVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFAN------LPGAAPETRGFVEG-LH----------- 216 (280)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGG------STTCCTHHHHHHHT-TS-----------
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhh------ccccCHHHHHHHhc-cC-----------
Confidence 56789999999999999988875 489999999999998731100 00001112222221 11
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
....+.+++|+|+++++++.... ....|+++++.+|..++.
T Consensus 217 -----p~~r~~~pedvA~~v~~L~s~~a-~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 217 -----ALKRIARPEEIAEAALYLASDGA-SFVTGAALLADGGASVTK 257 (280)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGCC
T ss_pred -----ccCCCcCHHHHHHHHHHHhCccc-cCCcCcEEEECCCccccc
Confidence 11236789999999999997622 346789999998876654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=196.16 Aligned_cols=248 Identities=17% Similarity=0.177 Sum_probs=169.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc------------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN------------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAA 69 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (347)
+|+++||||+|+||++++++|+++|++|++++|+.. ..+.....+.. .+.++.++.+|++|.++
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK----TGRKAYTAEVDVRDRAA 85 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH----TTSCEEEEECCTTCHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHh----cCCceEEEEccCCCHHH
Confidence 378999999999999999999999999999998732 12222222222 24678899999999999
Q ss_pred HHHHHccC-----CCcEEEEccccccCC--ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCC
Q 040584 70 LEVVFAGT-----KFDAVIHFAGLKAVG--ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVP 140 (347)
Q Consensus 70 ~~~~~~~~-----~~d~vih~a~~~~~~--~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~ 140 (347)
+.+++++. ++|+||||||..... .+.+.+...+++|+.++.++++++... +.++||++||...+......+
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~ 165 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPP 165 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccc
Confidence 98887643 699999999976533 234456779999999999999998765 345999999988764322222
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCC-CCc
Q 040584 141 CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGR-RPA 217 (347)
Q Consensus 141 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 217 (347)
..+..+..+...|+.+|.+.+.+++.++.++ .++++.+++||.+..+... -.+......... .+.
T Consensus 166 ~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~------------~~~~~~~~~~~~~~~~ 233 (287)
T 3pxx_A 166 GAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLN------------SAPMYRQFRPDLEAPS 233 (287)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTS------------SHHHHHHHCTTSSSCC
T ss_pred cccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccc------------ccchhhhhccccccch
Confidence 3333333455789999999999999888775 3799999999999986311 001111110000 000
Q ss_pred e-----EEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 218 L-----TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 218 ~-----~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
. .... .......+.+++|+|+++++++... .....|+++++.+|..++
T Consensus 234 ~~~~~~~~~~------~~~~~~~~~~p~dva~~v~fL~s~~-a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 234 RADALLAFPA------MQAMPTPYVEASDISNAVCFLASDE-SRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp HHHHHHHGGG------GCSSSCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGGG
T ss_pred hHHHHhhhhh------hcccCCCCCCHHHHHhhHheecchh-hcCCCCceEeECchhhhc
Confidence 0 0000 0111145789999999999998652 234678999998886543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=190.09 Aligned_cols=171 Identities=16% Similarity=0.233 Sum_probs=137.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA----GGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999877666555555443 457788999999999998887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-----------~~~ 148 (264)
T 3tfo_A 80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS-----------VVP 148 (264)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------CCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc-----------cCC
Confidence 6999999999765433 334556788999999998877654 34567999999988762 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
....|+.||.+.+.+.+.++.+.+++++.++.||.+..+
T Consensus 149 ~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~ 187 (264)
T 3tfo_A 149 TAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESE 187 (264)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---
T ss_pred CChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCc
Confidence 557899999999999999988877899999999988765
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=192.89 Aligned_cols=226 Identities=19% Similarity=0.162 Sum_probs=158.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+++|+||||+|+||++++++|+++|++|+++ .|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES----GGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999876 55544444444444332 457889999999999999888643
Q ss_pred --CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHHHc-------CCCeEEEeccccccCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMAAH-------GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 --~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~~~-------~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+||||||.... .. +.+.+...+++|+.++.++++++... +.++||++||...+..
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 173 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG-------- 173 (272)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC--------
T ss_pred CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC--------
Confidence 68999999997543 21 33455678999999999998887653 2458999999877521
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
.......|+.||.+.+.+++.++.++ .++++++++||.+.++.... . ...........
T Consensus 174 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-----~----~~~~~~~~~~~--------- 233 (272)
T 4e3z_A 174 --SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHAS-----G----GLPDRAREMAP--------- 233 (272)
T ss_dssp --CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC------------------------------------
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccc-----c----CChHHHHHHhh---------
Confidence 11234579999999999998887764 37999999999999863110 0 00001111111
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
......+.+++|+|+++++++.... ....|++|++.+|
T Consensus 234 --------~~~~~~~~~~edvA~~i~~l~s~~~-~~~tG~~i~vdgG 271 (272)
T 4e3z_A 234 --------SVPMQRAGMPEEVADAILYLLSPSA-SYVTGSILNVSGG 271 (272)
T ss_dssp --------CCTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTT
T ss_pred --------cCCcCCCcCHHHHHHHHHHHhCCcc-ccccCCEEeecCC
Confidence 1112235689999999999987522 2457899999876
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=188.94 Aligned_cols=225 Identities=14% Similarity=0.108 Sum_probs=162.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC-CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|+++.| +....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL----GSDAIAVRADVANAEDVTNMVKQTVDV 79 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999988 444444333444332 346888999999999999888642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 148 (246)
T 2uvd_A 80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVT-----------GN 148 (246)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------CC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcC-----------CC
Confidence 6999999999754322 233456789999999877766543 45667999999987652 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+.+.++.+. .++++++++||.+.++.... .... .........
T Consensus 149 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~~~~---~~~~~~~~~----------- 207 (246)
T 2uvd_A 149 PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDV-------LDEN---IKAEMLKLI----------- 207 (246)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSC-------CCTT---HHHHHHHTC-----------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhh-------cCHH---HHHHHHhcC-----------
Confidence 345689999999999998887664 37999999999998763110 0111 111111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++.+|+|+++.+++... .....++++++.+|.
T Consensus 208 ------p~~~~~~~~dvA~~~~~l~s~~-~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 208 ------PAAQFGEAQDIANAVTFFASDQ-SKYITGQTLNVDGGM 244 (246)
T ss_dssp ------TTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTS
T ss_pred ------CCCCCcCHHHHHHHHHHHcCch-hcCCCCCEEEECcCc
Confidence 0113789999999999998652 123568899998774
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=191.46 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=149.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-CCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-TKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~d~ 81 (347)
|+++||||+|+||++++++|+++ +|++++|+....+...+.+ . . .++.+|++|.+++.++++. .++|+
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~-------~-~-~~~~~D~~~~~~~~~~~~~~~~id~ 69 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREV-------G-A-RALPADLADELEAKALLEEAGPLDL 69 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHH-------T-C-EECCCCTTSHHHHHHHHHHHCSEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhc-------c-C-cEEEeeCCCHHHHHHHHHhcCCCCE
Confidence 68999999999999999999999 9999998755443322221 1 1 7888999999999998872 14999
Q ss_pred EEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhH
Q 040584 82 VIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 82 vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK 157 (347)
|||+||...... ..+.+...+++|+.++.++++++++.+.++||++||..+|. +..+...|+.+|
T Consensus 70 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~-----------~~~~~~~Y~~sK 138 (207)
T 2yut_A 70 LVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV-----------QVPGFAAYAAAK 138 (207)
T ss_dssp EEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH-----------SSTTBHHHHHHH
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc-----------CCCCcchHHHHH
Confidence 999999754322 33455678999999999999999766677999999998873 345567899999
Q ss_pred HHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 158 LFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 158 ~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
.++|.+++.++.+. .+++++++|||.++++. ..+ .+...+.
T Consensus 139 ~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~----------------------~~~---------------~~~~~~~ 181 (207)
T 2yut_A 139 GALEAYLEAARKELLREGVHLVLVRLPAVATGL----------------------WAP---------------LGGPPKG 181 (207)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGG----------------------GGG---------------GTSCCTT
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEecCcccCCC----------------------ccc---------------cCCCCCC
Confidence 99999999887763 48999999999999861 000 1122356
Q ss_pred eeeHHHHHHHHHHHHHh
Q 040584 236 YIHVVDLADGHIAALRK 252 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~ 252 (347)
+++++|+|++++.+++.
T Consensus 182 ~~~~~dva~~~~~~~~~ 198 (207)
T 2yut_A 182 ALSPEEAARKVLEGLFR 198 (207)
T ss_dssp CBCHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 89999999999999986
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=198.89 Aligned_cols=227 Identities=15% Similarity=0.130 Sum_probs=169.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+++... +.++.++.+|++|.+++.++++..
T Consensus 26 gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV----GHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT----TCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 378999999999999999999999999999998876666555555443 457889999999999999888642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+++...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~-----------~~~ 170 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL-----------ARA 170 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------BCT
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC-----------CCC
Confidence 6999999999764433 3345567899999999999776543 3567999999987652 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH---HHHHHHHcCCCCceEEecc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM---PFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~ 223 (347)
+...|+.+|.+.+.+++.++.++ .++++.+++||.+..+.. ..+. .+........
T Consensus 171 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~-----------~~~~~~~~~~~~~~~~~--------- 230 (271)
T 4ibo_A 171 TVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMN-----------QALIDNPEFDAWVKART--------- 230 (271)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGG-----------HHHHHCHHHHHHHHHHS---------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcch-----------hhcccCHHHHHHHHhcC---------
Confidence 56789999999999999888774 379999999999987620 0010 1111111111
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
....+..++|+|+++++++.... ....|+++++.+|...+
T Consensus 231 --------p~~r~~~pedva~~v~~L~s~~~-~~itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 231 --------PAKRWGKPQELVGTAVFLSASAS-DYVNGQIIYVDGGMLSV 270 (271)
T ss_dssp --------TTCSCBCGGGGHHHHHHHHSGGG-TTCCSCEEEESTTGGGB
T ss_pred --------CCCCCcCHHHHHHHHHHHhCccc-cCCCCcEEEECCCeecc
Confidence 11236789999999999887522 34678999998886544
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=190.30 Aligned_cols=238 Identities=17% Similarity=0.165 Sum_probs=164.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc---------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN---------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
+|+++||||+|+||++++++|+++|++|++++|... ......+.+.......+.++.++.+|++|.+++.+
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 94 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALRE 94 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 378999999999999999999999999999988421 01111222222222235678899999999999998
Q ss_pred HHccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcC-CCeEEEeccccccCCCCC
Q 040584 73 VFAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHG-CKNLVFSSSATAYGWPKV 138 (347)
Q Consensus 73 ~~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~-~~~iv~~SS~~~yg~~~~ 138 (347)
++++. ++|+||||||...... ..+.++..+++|+.++.++++++. +.+ .++||++||...+.
T Consensus 95 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 170 (280)
T 3pgx_A 95 LVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK---- 170 (280)
T ss_dssp HHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc----
Confidence 87642 6999999999765433 334456688899999999988764 333 46899999988762
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
+......|+.||.+.+.+++.++.+. .++++.+++||.+.+|... ...+...+..... ...
T Consensus 171 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---------~~~~~~~~~~~~~-~~~ 233 (280)
T 3pgx_A 171 -------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIE---------PEAMMEIFARHPS-FVH 233 (280)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC---------HHHHHHHHHHCGG-GGG
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccc---------hhhhhhhhhcCch-hhh
Confidence 33456789999999999999888774 3799999999999987210 0001111111000 000
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.+... ..... .+++++|+|+++++++.... ....|+++++.+|.
T Consensus 234 ~~~~~-------~~~~~-r~~~p~dvA~~v~~L~s~~~-~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 234 SFPPM-------PVQPN-GFMTADEVADVVAWLAGDGS-GTLTGTQIPVDKGA 277 (280)
T ss_dssp GSCCB-------TTBCS-SCBCHHHHHHHHHHHHSGGG-TTCSSCEEEESTTG
T ss_pred hhhhc-------ccCCC-CCCCHHHHHHHHHHHhCccc-cCCCCCEEEECCCc
Confidence 00000 11122 38899999999999987522 34678999997774
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=192.37 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=159.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+ ..++.++.+|++|.+++.++++..
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-------GDAALAVAADISKEADVDAAVEAALSKF 81 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-------CCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999866554443332 357889999999999999888643
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHHHc----C----CCeEEEeccccccCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMAAH----G----CKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~----~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+||||||.... .. ..+.+...+++|+.++.++++++... + ..+||++||...+.
T Consensus 82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------- 152 (261)
T 3n74_A 82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR--------- 152 (261)
T ss_dssp SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS---------
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC---------
Confidence 68999999997542 11 23445668899999999888876432 1 34799999987752
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+......|+.+|.+.+.+++.++.++ .++++.+++||.+.++..... ...... .....+
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--------------~~~~~~---~~~~~~ 213 (261)
T 3n74_A 153 --PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTF--------------MGEDSE---EIRKKF 213 (261)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------------------
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhh--------------cccCcH---HHHHHH
Confidence 34455679999999999999888774 379999999999887631100 000000 000000
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
. .......+++++|+|+++.+++... .....|+++++.+|..++-
T Consensus 214 ~------~~~~~~~~~~~~dva~~~~~l~s~~-~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 214 R------DSIPMGRLLKPDDLAEAAAFLCSPQ-ASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp ---------CTTSSCCCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTTTC--
T ss_pred h------hcCCcCCCcCHHHHHHHHHHHcCCc-ccCcCCcEEEecCCcccCC
Confidence 0 1122235789999999999988652 2346789999998876654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=194.94 Aligned_cols=227 Identities=14% Similarity=0.120 Sum_probs=166.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+.......... .....+.++.++.+|++|.+++.+++++.
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQ---YVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH---HHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH---HHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999876543222221 11123457889999999999998887643
Q ss_pred -CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... +.+++...+++|+.++.++++++... +.++||++||...+. +...
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 192 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE-----------GNET 192 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH-----------CCTT
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC-----------CCCC
Confidence 6999999999753221 34456778999999999999998865 245999999988773 3344
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.||.+.+.+++.++.++ .++++.+++||.+++|.. ...+.. ..... .
T Consensus 193 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~----------~~~~~~~~~~~~--~------------- 247 (291)
T 3ijr_A 193 LIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLI----------PSSFDEKKVSQF--G------------- 247 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHH----------HHHSCHHHHHHT--T-------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcc----------cccCCHHHHHHH--H-------------
Confidence 5789999999999999888774 379999999999998610 000000 11111 1
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.......+.+++|+|+++++++.... ....|+++++.+|..
T Consensus 248 --~~~p~~r~~~p~dvA~~v~~L~s~~~-~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 248 --SNVPMQRPGQPYELAPAYVYLASSDS-SYVTGQMIHVNGGVI 288 (291)
T ss_dssp --TTSTTSSCBCGGGTHHHHHHHHSGGG-TTCCSCEEEESSSCC
T ss_pred --ccCCCCCCcCHHHHHHHHHHHhCCcc-CCCcCCEEEECCCcc
Confidence 11222347789999999999987622 346789999987754
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=192.78 Aligned_cols=221 Identities=13% Similarity=0.073 Sum_probs=158.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|+.|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-------GKDVFVFSANLSDRKSIKQLAEVAEREM 99 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCceEEEEeecCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999998765544333222 457889999999999999887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+++...+++|+.++.++++++ ++.+.++||++||...+. +..
T Consensus 100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~-----------~~~ 168 (266)
T 3grp_A 100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV-----------GNP 168 (266)
T ss_dssp TSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC------------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC-----------CCC
Confidence 6999999999764322 33456678999999977776654 445667999999987652 333
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
+...|+.||.+.+.+++.++.++ .++++.+++||.+.++.. ..+.+ ....+...
T Consensus 169 ~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~-----------~~~~~~~~~~~~~~------------ 225 (266)
T 3grp_A 169 GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMT-----------DKLNEKQKEAIMAM------------ 225 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHH-----------HTCCHHHHHHHHTT------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchh-----------hccCHHHHHHHHhc------------
Confidence 45789999999999999888774 379999999999987521 00111 22222221
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+.+.+|+|+++.+++.... ....|+++++.+|.
T Consensus 226 -----~p~~r~~~~edvA~~v~~L~s~~~-~~itG~~i~vdGG~ 263 (266)
T 3grp_A 226 -----IPMKRMGIGEEIAFATVYLASDEA-AYLTGQTLHINGGM 263 (266)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCccc-cCccCCEEEECCCe
Confidence 112236789999999999987522 34678999998775
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=191.88 Aligned_cols=232 Identities=15% Similarity=0.123 Sum_probs=165.8
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+ |+||++++++|+++|++|++++|+.. .....+.+.... ..+.++.+|++|.+++.++++..
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEAL----GGALLFRADVTQDEELDALFAGVKE 82 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHT----TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhc----CCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3789999999 99999999999999999999998764 222333333221 24788999999999998887642
Q ss_pred ---CCcEEEEccccccC--------CccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV--------GESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||.... ....+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 152 (261)
T 2wyu_A 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK---------- 152 (261)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS----------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC----------
Confidence 68999999997532 1233455678999999999999998764 125999999987652
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+..+...|+.||.+.+.+++.++.++ .++++++++||.+++|.... . .........+.... +
T Consensus 153 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~-~~~~~~~~~~~~~~--p----- 216 (261)
T 2wyu_A 153 -VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARS-------I-PGFTKMYDRVAQTA--P----- 216 (261)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGG-------C-TTHHHHHHHHHHHS--T-----
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhh-------c-cccHHHHHHHHhcC--C-----
Confidence 23345689999999999999887764 37999999999999863110 0 01112222222211 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
...+.+++|+|+++.+++.... ....+++|++.+|..++..|
T Consensus 217 ----------~~~~~~~~dva~~v~~l~s~~~-~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 217 ----------LRRNITQEEVGNLGLFLLSPLA-SGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp ----------TSSCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGBC--
T ss_pred ----------CCCCCCHHHHHHHHHHHcChhh-cCCCCCEEEECCCccccCCC
Confidence 1125689999999999986522 23568999998887665444
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=191.41 Aligned_cols=227 Identities=15% Similarity=0.053 Sum_probs=163.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 34 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 109 (279)
T 3ctm_A 34 GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY----GVHSKAYKCNISDPKSVEETISQQEKDF 109 (279)
T ss_dssp TCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH----CSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999999877655444444332 347889999999999998887642
Q ss_pred -CCcEEEEccccccC-C-----ccccCcchhhhhhhhHH----HHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-G-----ESVQKPLPYFDNNLTGT----ITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~-----~~~~~~~~~~~~nv~~~----~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+|||+||.... . ...+.+...+++|+.++ +.+++.+++.+.++||++||...+.. .+
T Consensus 110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~---------~~ 180 (279)
T 3ctm_A 110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIV---------NI 180 (279)
T ss_dssp SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----------
T ss_pred CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccC---------CC
Confidence 49999999997543 1 12234456889999995 56666777777789999999876521 01
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
..+...|+.+|.+.|.+++.++.++ .+ ++++++||.+.++... . .............
T Consensus 181 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~-------~---~~~~~~~~~~~~~---------- 239 (279)
T 3ctm_A 181 PQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITD-------F---ASKDMKAKWWQLT---------- 239 (279)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTS-------S---CCHHHHHHHHHHS----------
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccc-------c---cChHHHHHHHHhC----------
Confidence 3455789999999999999998875 35 9999999999876210 0 0011222221110
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+++++|+|+++.+++.... ....++++++.+|..
T Consensus 240 -------p~~~~~~~~dvA~~~~~l~s~~~-~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 240 -------PLGREGLTQELVGGYLYLASNAS-TFTTGSDVVIDGGYT 277 (279)
T ss_dssp -------TTCSCBCGGGTHHHHHHHHSGGG-TTCCSCEEEESTTCC
T ss_pred -------CccCCcCHHHHHHHHHHHhCccc-cCccCCEEEECCCee
Confidence 01137899999999999987522 235779999987754
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=190.29 Aligned_cols=225 Identities=16% Similarity=0.133 Sum_probs=164.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC-CCchhHHHHHHHHHhhccCCCCeEEEecCCCCH----HHHHHHHccC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK----AALEVVFAGT 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~~~~ 77 (347)
|+++||||+|+||++++++|+++|++|++++| +....+...+.+... .+.++.++.+|++|. +++.++++..
T Consensus 12 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 12 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA---RAGSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---STTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHh---cCCceEEEeccCCCccccHHHHHHHHHHH
Confidence 68999999999999999999999999999998 655444444444332 134688899999999 8888877632
Q ss_pred -----CCcEEEEccccccCCcc----c-----------cCcchhhhhhhhHHHHHHHHHHHc---CC------CeEEEec
Q 040584 78 -----KFDAVIHFAGLKAVGES----V-----------QKPLPYFDNNLTGTITLLEVMAAH---GC------KNLVFSS 128 (347)
Q Consensus 78 -----~~d~vih~a~~~~~~~~----~-----------~~~~~~~~~nv~~~~~l~~~~~~~---~~------~~iv~~S 128 (347)
++|+||||||....... . +.+...+++|+.++.++++++... +. ++||++|
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~is 168 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC 168 (276)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred HHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEC
Confidence 69999999997543221 1 344568999999999999988763 33 6999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHH
Q 040584 129 SATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPF 206 (347)
Q Consensus 129 S~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~ 206 (347)
|...+. +..+...|+.||.+.+.+++.++.+. .++++++++||.+++| . .. ....
T Consensus 169 S~~~~~-----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~--------~~---~~~~ 225 (276)
T 1mxh_A 169 DAMTDL-----------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P--------AM---PQET 225 (276)
T ss_dssp CGGGGS-----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S--------SS---CHHH
T ss_pred chhhcC-----------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c--------cC---CHHH
Confidence 988763 33456789999999999999887764 3799999999999986 1 00 0112
Q ss_pred HHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 207 VTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
........ + -+ +++.+++|+|+++++++.... ....+++|++.+|..
T Consensus 226 ~~~~~~~~--p-----------~~---r~~~~~~dva~~v~~l~s~~~-~~~tG~~~~vdgG~~ 272 (276)
T 1mxh_A 226 QEEYRRKV--P-----------LG---QSEASAAQIADAIAFLVSKDA-GYITGTTLKVDGGLI 272 (276)
T ss_dssp HHHHHTTC--T-----------TT---SCCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGG
T ss_pred HHHHHhcC--C-----------CC---CCCCCHHHHHHHHHHHhCccc-cCccCcEEEECCchh
Confidence 22222211 0 11 126789999999999987522 235678999987753
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=194.55 Aligned_cols=228 Identities=15% Similarity=0.111 Sum_probs=165.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----T 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 77 (347)
+|+++||||+|+||++++++|+++|++|++++|.. ......+.+.. .+.++.++.+|++|.+++.++.+. .
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g 105 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-GVKEVADEIAD----GGGSAEAVVADLADLEGAANVAEELAATR 105 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-HHHHHHHHHHT----TTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-HHHHHHHHHHh----cCCcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999998653 33333333332 245788999999999988877542 1
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... +.+++...+++|+.++.++++++ ++.+.++||++||...+. +..+
T Consensus 106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-----------~~~~ 174 (273)
T 3uf0_A 106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ-----------GGRN 174 (273)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCSS
T ss_pred CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC-----------CCCC
Confidence 6999999999765433 33445678999999999998876 344667999999988762 3445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.||.+.+.+++.++.+. .++++.+++||.+.+|..... ..............
T Consensus 175 ~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--------~~~~~~~~~~~~~~------------- 233 (273)
T 3uf0_A 175 VAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAAL--------RADDERAAEITARI------------- 233 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH--------HTSHHHHHHHHHHS-------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhc--------ccCHHHHHHHHhcC-------------
Confidence 6789999999999999988774 379999999999988621000 00001111211111
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+..++|+|+++.+++.... ....|+++++.+|...
T Consensus 234 ----p~~r~~~pedva~~v~~L~s~~a-~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 234 ----PAGRWATPEDMVGPAVFLASDAA-SYVHGQVLAVDGGWLA 272 (273)
T ss_dssp ----TTSSCBCGGGGHHHHHHHHSGGG-TTCCSCEEEESTTGGG
T ss_pred ----CCCCCCCHHHHHHHHHHHhCchh-cCCcCCEEEECcCccC
Confidence 11236789999999999987522 3467899999888654
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=191.08 Aligned_cols=237 Identities=14% Similarity=0.099 Sum_probs=162.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----CC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----TK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~ 78 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+.... ...++.++.+|++|.+++.++++. ++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV--SGAQVDIVAGDIREPGDIDRLFEKARDLGG 85 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--TTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999997665554444443210 022688899999999999888762 24
Q ss_pred CcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 79 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
+|+||||||...... ..+.+...+++|+.++.++++++ ++.+.++||++||...+. +..+.
T Consensus 86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~ 154 (260)
T 2z1n_A 86 ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR-----------PWQDL 154 (260)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCTTB
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC-----------CCCCC
Confidence 999999999654322 23345678999999997776654 345677999999998863 33445
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.+|.+.+.+.+.++.++ .++++++++||.+++|........... ...+.... . ...+.
T Consensus 155 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~~~~~~~~---~---~~~~~--------- 218 (260)
T 2z1n_A 155 ALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERAR-RSGITVEE---A---LKSMA--------- 218 (260)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC--------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhc-ccCCcHHH---H---HHHHH---------
Confidence 789999999999999887764 379999999999998732100000000 00000000 0 00000
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+.+.+|+|+++.+++.... ....++++++.+|.
T Consensus 219 ~~~p~~r~~~~~dva~~v~~l~s~~~-~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 219 SRIPMGRVGKPEELASVVAFLASEKA-SFITGAVIPVDGGA 258 (260)
T ss_dssp -CCTTSSCCCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTT
T ss_pred hcCCCCCccCHHHHHHHHHHHhCccc-cCCCCCEEEeCCCc
Confidence 00111236799999999999887522 24578999998774
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=190.01 Aligned_cols=224 Identities=13% Similarity=0.069 Sum_probs=165.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
|+|+|+||||+|+||++++++|+++|++|+++. |+........+.+... ..++.++.+|++|.+++.++++..
T Consensus 25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN----GGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999997755 4433444334444332 457899999999999998887642
Q ss_pred ---CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH-----HcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA-----AHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~-----~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||...... +.+.+...+++|+.++.++++++. +.+.++||++||...+.
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 169 (267)
T 4iiu_A 101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM----------- 169 (267)
T ss_dssp HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH-----------
T ss_pred HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc-----------
Confidence 6999999999765432 334556789999999999988763 44567999999987652
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+..+...|+.+|.+.+.+.+.++.++ .++++.+++||.+..+.. ..............
T Consensus 170 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~-----------~~~~~~~~~~~~~~--------- 229 (267)
T 4iiu_A 170 GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMI-----------EMEESALKEAMSMI--------- 229 (267)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTC-----------CCCHHHHHHHHHTC---------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCcc-----------cccHHHHHHHHhcC---------
Confidence 33456789999999999998887764 379999999999988621 11222333333221
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....+..++|+|+++.+++.... ....|+++++.+|
T Consensus 230 --------p~~~~~~~edva~~~~~L~s~~~-~~itG~~i~vdGG 265 (267)
T 4iiu_A 230 --------PMKRMGQAEEVAGLASYLMSDIA-GYVTRQVISINGG 265 (267)
T ss_dssp --------TTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTT
T ss_pred --------CCCCCcCHHHHHHHHHHHhCCcc-cCccCCEEEeCCC
Confidence 11236789999999999987522 3467899999776
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=191.78 Aligned_cols=233 Identities=15% Similarity=0.064 Sum_probs=167.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++++||||+|+||++++++|+++|++|++++|+....+...+.+.. .+.++.++.+|++|.+++.+++++.
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 29 PVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG----AGGQAIALEADVSDELQMRNAVRDLVLKFG 104 (283)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT----TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999987665554444433 2457889999999999998888643
Q ss_pred CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||.... . ...+.+...+++|+.++.++++++ ++.+.++||++||...+.. .+..
T Consensus 105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~---------~~~~ 175 (283)
T 3v8b_A 105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT---------FTTP 175 (283)
T ss_dssp CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB---------CCST
T ss_pred CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC---------CCCC
Confidence 69999999997532 1 123445678999999999998887 4556679999999876421 1334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.||.+.+.+++.++.+. .++++.+++||.+..+...... . .... . .. .. .....
T Consensus 176 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-------~-~~~~--~-~~-~~--~~~~~---- 237 (283)
T 3v8b_A 176 GATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTK-------L-RHEE--E-TA-IP--VEWPK---- 237 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTT-------B-CCHH--H-HS-CC--CBCTT----
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccc-------c-ccch--h-hh-hh--hhhhh----
Confidence 56789999999999999998875 3799999999999876321100 0 0000 0 00 00 00000
Q ss_pred CCCCcee--eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVV--RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~--~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..... ..+...+|+|+++.+++.... ....|+++++.+|.
T Consensus 238 --~~~p~~~~r~~~pedvA~~v~fL~s~~a-~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 238 --GQVPITDGQPGRSEDVAELIRFLVSERA-RHVTGSPVWIDGGQ 279 (283)
T ss_dssp --CSCGGGTTCCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTH
T ss_pred --hcCccccCCCCCHHHHHHHHHHHcCccc-cCCcCCEEEECcCc
Confidence 00111 236789999999999887522 34678999998774
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=187.10 Aligned_cols=224 Identities=14% Similarity=0.145 Sum_probs=158.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+. ...+. .+... +.++.++.+|++|.+++.++++..
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 7 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL----GRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc----CCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999986 43322 22222 347888999999999998886531
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.+++++ +++.+.++||++||...+. +.
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 148 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL-----------KI 148 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS-----------CC
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc-----------CC
Confidence 6999999999754332 2334566889999998888777 5555677999999998763 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+.+.++.+. .++++++++||.+.++... . .+......... . +.
T Consensus 149 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----~-----~~~~~~~~~~~-~---~~------ 208 (249)
T 2ew8_A 149 EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTE-----A-----SALSAMFDVLP-N---ML------ 208 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-----------------------------C---TT------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccch-----h-----ccccchhhHHH-H---hh------
Confidence 456789999999999999888764 3799999999999886210 0 00000000000 0 00
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+.+.+|+|+++.+++... .....++++++.+|.
T Consensus 209 -----~~~~~~~~p~dva~~~~~l~s~~-~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 209 -----QAIPRLQVPLDLTGAAAFLASDD-ASFITGQTLAVDGGM 246 (249)
T ss_dssp -----SSSCSCCCTHHHHHHHHHHTSGG-GTTCCSCEEEESSSC
T ss_pred -----CccCCCCCHHHHHHHHHHHcCcc-cCCCCCcEEEECCCc
Confidence 01123689999999999988652 224578999998774
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-25 Score=193.51 Aligned_cols=224 Identities=17% Similarity=0.117 Sum_probs=161.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..... ....+.+|++|.+++.++++..
T Consensus 28 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~---------------~~~~~~~Dv~~~~~~~~~~~~~~~~~ 92 (266)
T 3uxy_A 28 GKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA---------------ADLHLPGDLREAAYADGLPGAVAAGL 92 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC---------------CSEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---------------hhhccCcCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999998765432 2244578999999888777532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++ ++.+.++||++||...+. +..
T Consensus 93 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~ 161 (266)
T 3uxy_A 93 GRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR-----------PGP 161 (266)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB-----------CCT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC-----------CCC
Confidence 6999999999765433 33445668889999999999887 455667999999987762 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.||.+.+.+++.++.++ .++++.+++||.+.++........ .. ............
T Consensus 162 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~--~~~~~~~~~~~~-------------- 224 (266)
T 3uxy_A 162 GHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAK-RG--FDPDRAVAELGR-------------- 224 (266)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHH-TT--CCHHHHHHHHHT--------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhc-cc--ccchHHHHHHHh--------------
Confidence 56789999999999999888775 379999999999987510000000 00 000001111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
......+.+++|+|+++++++.... ....|+++++.+|..++
T Consensus 225 ---~~p~~r~~~pedvA~~v~~L~s~~~-~~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 225 ---TVPLGRIAEPEDIADVVLFLASDAA-RYLCGSLVEVNGGKAVA 266 (266)
T ss_dssp ---TSTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTCCCC
T ss_pred ---cCCCCCCcCHHHHHHHHHHHhCchh-cCCcCCEEEECcCEeCC
Confidence 1122347899999999999997622 24578999998887553
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=193.20 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=170.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+..... ...++.++.+|++|.+++.++++..
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 105 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINTTLAKFG 105 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999986655544444433210 0116788999999999998887632
Q ss_pred CCcEEEEccccccCCc------cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE------SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+ ++||++||...+. +.
T Consensus 106 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~-----------~~ 173 (297)
T 1xhl_A 106 KIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGP-----------QA 173 (297)
T ss_dssp CCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSS-----------SC
T ss_pred CCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhcc-----------CC
Confidence 6999999999654322 2334567899999999999887654 34 7999999988763 22
Q ss_pred -CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 148 -QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 -~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.+|.+.+.+.+.++.+. .++++++++||.+.++..... ....................
T Consensus 174 ~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~-----~~~~~~~~~~~~~~~~~~~~------- 241 (297)
T 1xhl_A 174 HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAM-----GLPETASDKLYSFIGSRKEC------- 241 (297)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHT-----TCCHHHHHHHHHHHHHCTTT-------
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcccccc-----ccccccccchHHHHHHHHhc-------
Confidence 345689999999999999887653 389999999999988620000 00000000000010000000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHH
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKA 283 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~ 283 (347)
.....+...+|+|+++++++.........++++++.+|..+...+.+..+.++
T Consensus 242 ------~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 242 ------IPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp ------CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred ------CCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhhh
Confidence 01123789999999999998652012467899999888766655544444433
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=186.62 Aligned_cols=223 Identities=15% Similarity=0.151 Sum_probs=163.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCC--CCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL--RDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~~~-- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+.... ..++.++.+|+ +|.+++.++++..
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET---GRQPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---SCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc---CCCceEEEEecccCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998776665555554432 24678899999 9999888877642
Q ss_pred ---CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 ---~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||.... .. ..+.+...+++|+.++.++++++ ++.+.++||++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 157 (252)
T 3f1l_A 89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ----------- 157 (252)
T ss_dssp HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-----------
Confidence 69999999997422 11 23345678999999999999887 444567999999987752
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhcC-CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSDS-EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
+......|+.||.+.+.+.+.++.++. .+++.++.||.+..+ +...... .
T Consensus 158 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~------------------~~~~~~~-~---------- 208 (252)
T 3f1l_A 158 GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA------------------MRASAFP-T---------- 208 (252)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH------------------HHHHHCT-T----------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc------------------hhhhhCC-c----------
Confidence 334557899999999999999998862 388899998877653 2222111 1
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHH
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVL 274 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~ 274 (347)
.....+...+|+++++++++.... ....|+++++.+|...++.
T Consensus 209 ------~~~~~~~~p~dva~~~~~L~s~~~-~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 209 ------EDPQKLKTPADIMPLYLWLMGDDS-RRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp ------CCGGGSBCTGGGHHHHHHHHSGGG-TTCCSCEEESSCC------
T ss_pred ------cchhccCCHHHHHHHHHHHcCccc-cCCCCCEEEeCCCcCCCCC
Confidence 111235688999999999987622 3467899999988876654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-25 Score=192.16 Aligned_cols=230 Identities=14% Similarity=0.071 Sum_probs=168.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+.... +.++.++.+|++|.+++.++++..
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF---GTDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999998766665555554321 457899999999999988887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+ .++||++||...+. +.
T Consensus 97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 165 (266)
T 4egf_A 97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA-----------PL 165 (266)
T ss_dssp TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------CC
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc-----------CC
Confidence 6999999999765433 2334566889999999999887653 23 45999999988762 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+.+.++.++ .++++.+++||.+..+..... . ............
T Consensus 166 ~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------~-~~~~~~~~~~~~------------ 225 (266)
T 4egf_A 166 PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRV-------W-GDEAKSAPMIAR------------ 225 (266)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHH-------T-CSHHHHHHHHTT------------
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhh-------c-cChHHHHHHHhc------------
Confidence 456789999999999999888774 379999999999887510000 0 000111111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.....+...+|+|+++++++.... ....|+++++.+|..+
T Consensus 226 -----~p~~r~~~p~dva~~v~~L~s~~~-~~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 226 -----IPLGRFAVPHEVSDAVVWLASDAA-SMINGVDIPVDGGYTM 265 (266)
T ss_dssp -----CTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGG
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCchh-cCccCcEEEECCCccC
Confidence 111236789999999999987522 3467899999887643
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=187.86 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=161.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+.. ..++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-----cCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999876544333322211 147889999999999999887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCC-CeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGC-KNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~-~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++.+++. +.+. ++||++||...+. +.
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~ 149 (251)
T 1zk4_A 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV-----------GD 149 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS-----------CC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc-----------CC
Confidence 5899999999754322 223446689999998887766543 4455 6999999998763 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhh----cCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRS----DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
.+...|+.+|.+++.+++.++.+ ..+++++++|||.+++|... ... ...... ....
T Consensus 150 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~-------~~~---~~~~~~-~~~~--------- 209 (251)
T 1zk4_A 150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVD-------DLP---GAEEAM-SQRT--------- 209 (251)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHH-------TST---THHHHH-TSTT---------
T ss_pred CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhh-------hcC---chhhhH-HHhh---------
Confidence 45678999999999999887764 24899999999999986210 000 001111 0000
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......+++++|+|+++.+++.... ....++.|++.+|..
T Consensus 210 ------~~~~~~~~~~~dva~~~~~l~~~~~-~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 210 ------KTPMGHIGEPNDIAYICVYLASNES-KFATGSEFVVDGGYT 249 (251)
T ss_dssp ------TCTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGG
T ss_pred ------cCCCCCCcCHHHHHHHHHHHcCccc-ccccCcEEEECCCcc
Confidence 1112247899999999999987522 235678999988754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-25 Score=194.64 Aligned_cols=229 Identities=17% Similarity=0.148 Sum_probs=165.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+... .+...+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE----CGRKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH----TTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH----cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999998876332 2222222222 2457889999999999988887632
Q ss_pred ---CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHHHHcCC--CeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVMAAHGC--KNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ---~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~~~~~~--~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||.... . .+.+.+...+++|+.++.++++++...-. ++||++||...+. +.
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~-----------~~ 193 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ-----------PS 193 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS-----------CC
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc-----------CC
Confidence 69999999997432 1 13345577899999999999999876532 4999999998874 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.||.+.+.+++.++.++ .++++.+++||.|.++.....+. .. ..... +.
T Consensus 194 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-----~~---~~~~~-----------~~--- 251 (294)
T 3r3s_A 194 PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-----TQ---DKIPQ-----------FG--- 251 (294)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS-----CG---GGSTT-----------TT---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC-----CH---HHHHH-----------HH---
Confidence 456789999999999999888774 37999999999998752000000 00 00000 00
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.......+...+|+|+++++++... .....|+++++.+|..+
T Consensus 252 ---~~~p~~r~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 252 ---QQTPMKRAGQPAELAPVYVYLASQE-SSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp ---TTSTTSSCBCGGGGHHHHHHHHSGG-GTTCCSCEEEESTTCCC
T ss_pred ---hcCCCCCCcCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCccC
Confidence 1112234678999999999998752 23467899999888654
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=201.58 Aligned_cols=240 Identities=15% Similarity=0.095 Sum_probs=175.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC----------CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL----------DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
|+++||||+|+||++++++|+++|++|++++|+ ........+.+... +.++.++.+|++|.+++.+
T Consensus 28 k~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~ 103 (322)
T 3qlj_A 28 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA----GGEAVADGSNVADWDQAAG 103 (322)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT----TCEEEEECCCTTSHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHH
Confidence 689999999999999999999999999999887 34444444444432 4578889999999999988
Q ss_pred HHccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC----------CCeEEEecccccc
Q 040584 73 VFAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG----------CKNLVFSSSATAY 133 (347)
Q Consensus 73 ~~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~----------~~~iv~~SS~~~y 133 (347)
+++.. ++|+||||||...... +.+.+...+++|+.++.++++++...- -++||++||...+
T Consensus 104 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~ 183 (322)
T 3qlj_A 104 LIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGL 183 (322)
T ss_dssp HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHc
Confidence 87643 6999999999765432 334556789999999999988765321 1499999998775
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH
Q 040584 134 GWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA 211 (347)
Q Consensus 134 g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (347)
. +......|+.||.+.+.+++.++.++ .++++.+++|| +..+-.. .. +.....
T Consensus 184 ~-----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~-------~~---~~~~~~--- 238 (322)
T 3qlj_A 184 Q-----------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTE-------TV---FAEMMA--- 238 (322)
T ss_dssp H-----------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSC-------CS---CCC------
T ss_pred c-----------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccch-------hh---hhhhhh---
Confidence 2 33455789999999999999988874 37999999998 6544210 00 000000
Q ss_pred cCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc-----------------cHH
Q 040584 212 VGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT-----------------SVL 274 (347)
Q Consensus 212 ~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~-----------------s~~ 274 (347)
.....+.++.++|+|+++++++.... ....|++|++.+|... ++.
T Consensus 239 -----------------~~~~~~~~~~pedva~~v~~L~s~~~-~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~ 300 (322)
T 3qlj_A 239 -----------------TQDQDFDAMAPENVSPLVVWLGSAEA-RDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPA 300 (322)
T ss_dssp ----------------------CCTTCGGGTHHHHHHHTSGGG-GGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGG
T ss_pred -----------------ccccccCCCCHHHHHHHHHHHhCccc-cCCCCCEEEECCCccccCCCcccccccCccCCCCHH
Confidence 01112235689999999999886522 2357899999887644 779
Q ss_pred HHHHHHHHHhCCCCC
Q 040584 275 EMVAAFEKASGKKIP 289 (347)
Q Consensus 275 e~~~~i~~~~g~~~~ 289 (347)
|+++.+.+.+|.+.+
T Consensus 301 el~~~~~~~~~~~~~ 315 (322)
T 3qlj_A 301 ELGPVVADLLGKARP 315 (322)
T ss_dssp GHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhccCC
Confidence 999999999985543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=188.26 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=170.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
|+++||||+|+||++++++|+++|++|++++|+........+++..... ...+..+.+|++|.+++.++++++ ++|+
T Consensus 11 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 88 (267)
T 3t4x_A 11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP--DAILQPVVADLGTEQGCQDVIEKYPKVDI 88 (267)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT--TCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC--CceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence 6899999999999999999999999999999987766655555544321 345778899999999999988765 6999
Q ss_pred EEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCch
Q 040584 82 VIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPY 153 (347)
Q Consensus 82 vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y 153 (347)
||||||....... .+.+...+++|+.++.++++++. +.+.++||++||...+. +..+...|
T Consensus 89 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~Y 157 (267)
T 3t4x_A 89 LINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM-----------PSQEMAHY 157 (267)
T ss_dssp EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS-----------CCTTCHHH
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc-----------CCCcchHH
Confidence 9999997654332 23445578999999888766544 44567999999988762 44556789
Q ss_pred hhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCC
Q 040584 154 GRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
+.||.+.+.+.+.++.+. .++++.++.||.+..+..... ................+...... ..
T Consensus 158 ~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 224 (267)
T 3t4x_A 158 SATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR-------------PT 224 (267)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC-------------TT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC-------------Cc
Confidence 999999999999998876 368999999998876410000 00000000000001111111000 01
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+.+++|+|+++.+++... .....|+++++.+|...+
T Consensus 225 ~~~~r~~~pedvA~~v~fL~s~~-~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 225 SIIQRLIRPEEIAHLVTFLSSPL-SSAINGSALRIDGGLVRS 265 (267)
T ss_dssp CSSCSCBCTHHHHHHHHHHHSGG-GTTCCSCEEEESTTCSCS
T ss_pred ccccCccCHHHHHHHHHHHcCcc-ccCccCCeEEECCCcccc
Confidence 11235789999999999988752 234678999998887654
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=187.79 Aligned_cols=227 Identities=13% Similarity=0.088 Sum_probs=168.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+++... +.++.++.+|++|.+++.+++++.
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 107 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV----GGKALPIRCDVTQPDQVRGMLDQMTGEL 107 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 379999999999999999999999999999999887777666666543 457889999999999999888743
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||....... .+.++..+++|+.++.++++++.. .+ .++||++||...+... +.
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~---------~~ 178 (276)
T 3r1i_A 108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN---------IP 178 (276)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------CS
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC---------CC
Confidence 69999999997654332 334456778999999999887654 23 2589999998765211 11
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+++.++.++ .++++.+++||.+..+.. ..+...........
T Consensus 179 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~-----------~~~~~~~~~~~~~~----------- 236 (276)
T 3r1i_A 179 QQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELV-----------EPLADYHALWEPKI----------- 236 (276)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTT-----------GGGGGGHHHHGGGS-----------
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcc-----------ccchHHHHHHHhcC-----------
Confidence 245689999999999999988874 379999999999987621 11111122221111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+...+|+|+++++++.... ....|+++++.+|..
T Consensus 237 ------p~~r~~~pedvA~~v~fL~s~~~-~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 237 ------PLGRMGRPEELTGLYLYLASAAS-SYMTGSDIVIDGGYT 274 (276)
T ss_dssp ------TTSSCBCGGGSHHHHHHHHSGGG-TTCCSCEEEESTTTT
T ss_pred ------CCCCCcCHHHHHHHHHHHcCccc-cCccCcEEEECcCcc
Confidence 11236789999999999987522 346789999987753
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=187.17 Aligned_cols=225 Identities=14% Similarity=0.093 Sum_probs=163.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+... .+.++.++.+|++|.+++.++++..
T Consensus 21 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK---YGVETMAFRCDVSNYEEVKKLLEAVKEKF 97 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999866554444443111 1346788999999999998887632
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEecccc-ccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSAT-AYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~-~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||....... .+.+...+++|+.++.++++++. +.+.++||++||.. .+ .+.
T Consensus 98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~ 166 (267)
T 1vl8_A 98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE-----------VTM 166 (267)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC-----------CCS
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc-----------cCC
Confidence 69999999997643322 23445688899999999988764 34567999999987 32 123
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH---HHHHHHHcCCCCceEEec
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM---PFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g 222 (347)
.+...|+.+|.+.+.+++.++.+. .++++++++||.+..+.. ..+. ..........
T Consensus 167 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~-----------~~~~~~~~~~~~~~~~~-------- 227 (267)
T 1vl8_A 167 PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMT-----------EAVFSDPEKLDYMLKRI-------- 227 (267)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTT-----------HHHHTCHHHHHHHHHTC--------
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccc-----------cccccChHHHHHHHhhC--------
Confidence 445789999999999999887764 389999999999887520 0010 1111121111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++.+|+|+++++++.... ....|+++++.+|.
T Consensus 228 ---------p~~~~~~p~dvA~~v~~l~s~~~-~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 228 ---------PLGRTGVPEDLKGVAVFLASEEA-KYVTGQIIFVDGGW 264 (267)
T ss_dssp ---------TTSSCBCGGGGHHHHHHHHSGGG-TTCCSCEEEESTTG
T ss_pred ---------CCCCCcCHHHHHHHHHHHcCccc-cCCcCCeEEECCCC
Confidence 01136789999999999987522 24578899998774
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=181.98 Aligned_cols=216 Identities=14% Similarity=0.103 Sum_probs=161.0
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+|+||||++.||++++++|+++|++|++++|+.+......+ ...++..+.+|++|++++++++++.
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~--------~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 72 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK--------ERPNLFYFHGDVADPLTLKKFVEYAMEK 72 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT--------TCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------hcCCEEEEEecCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999987544332221 1457888999999999998877542
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... +.++++..+++|+.++..+.+++... +-+++|++||...+. +..
T Consensus 73 ~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~-----------~~~ 141 (247)
T 3ged_A 73 LQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ-----------SEP 141 (247)
T ss_dssp HSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS-----------CCT
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc-----------CCC
Confidence 6999999999765433 34456778999999999888765532 236999999987652 333
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
....|+.||.+...+.+.++.++ +++++.++-||.+--+.. ..+. ......- ++
T Consensus 142 ~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~-----------~~~~---~~~~~~~--Pl--------- 196 (247)
T 3ged_A 142 DSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQ-----------QEFT---QEDCAAI--PA--------- 196 (247)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC--------------CC---HHHHHTS--TT---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCc-----------HHHH---HHHHhcC--CC---------
Confidence 45689999999999999998886 579999999998765421 0111 1111110 11
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++.. +...|+++.|.+|.
T Consensus 197 --~----R~g~pediA~~v~fL~s~---~~iTG~~i~VDGG~ 229 (247)
T 3ged_A 197 --G----KVGTPKDISNMVLFLCQQ---DFITGETIIVDGGM 229 (247)
T ss_dssp --S----SCBCHHHHHHHHHHHHHC---SSCCSCEEEESTTG
T ss_pred --C----CCcCHHHHHHHHHHHHhC---CCCCCCeEEECcCH
Confidence 1 145789999999999975 46788999998774
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=189.94 Aligned_cols=225 Identities=14% Similarity=0.074 Sum_probs=163.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+.... +...+.+.. .+.++.++.+|++|.+++.++++..
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 29 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE----KGYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh----cCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999865433 222333332 2457889999999999998888642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +.
T Consensus 105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 173 (271)
T 4iin_A 105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER-----------GN 173 (271)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------CC
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC-----------CC
Confidence 6999999999765432 234456788999999998877754 34567999999987752 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.+|.+.+.+++.++.+. .++++.+++||.+..+... .+....... +.
T Consensus 174 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-----------~~~~~~~~~----------~~--- 229 (271)
T 4iin_A 174 MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNA-----------NLKDELKAD----------YV--- 229 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------------------------CG---
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchh-----------hhcHHHHHH----------HH---
Confidence 456789999999999999888773 4899999999998875210 011000000 00
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+.+.+|+|+++.+++.... ....|+++++.+|.
T Consensus 230 ---~~~~~~~~~~p~dvA~~i~~l~s~~~-~~itG~~i~vdGG~ 269 (271)
T 4iin_A 230 ---KNIPLNRLGSAKEVAEAVAFLLSDHS-SYITGETLKVNGGL 269 (271)
T ss_dssp ---GGCTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTS
T ss_pred ---hcCCcCCCcCHHHHHHHHHHHhCCCc-CCCcCCEEEeCCCe
Confidence 01122347899999999999987632 34678999998774
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=188.19 Aligned_cols=228 Identities=16% Similarity=0.139 Sum_probs=164.8
Q ss_pred ceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++||||+ |+||++++++|+++|++|++++|+. ......+.+.... ....++.+|++|.+++.++++..
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL----GSDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHT----TCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhc----CCcEEEEccCCCHHHHHHHHHHHHHH
Confidence 579999999 9999999999999999999999876 3333333333321 23478899999999998887632
Q ss_pred --CCcEEEEccccccC----C-----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV----G-----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 --~~d~vih~a~~~~~----~-----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||.... . ...+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 154 (265)
T 1qsg_A 85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---------- 154 (265)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc----------
Confidence 58999999997542 1 223455678999999999999998764 124999999987752
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+..+...|+.||.+.+.+++.++.+. .++++++++||.+++|.... . .....+...+.... +
T Consensus 155 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-------~-~~~~~~~~~~~~~~--p----- 218 (265)
T 1qsg_A 155 -AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG-------I-KDFRKMLAHCEAVT--P----- 218 (265)
T ss_dssp -BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGG-------S-TTHHHHHHHHHHHS--T-----
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhc-------c-cccHHHHHHHHhcC--C-----
Confidence 33445789999999999999888774 37999999999999873110 0 01112222222211 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
...+.+++|+|+++++++.... ....+++|++.+|..++
T Consensus 219 ----------~~~~~~~~dva~~v~~l~s~~~-~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 219 ----------IRRTVTIEDVGNSAAFLCSDLS-AGISGEVVHVDGGFSIA 257 (265)
T ss_dssp ----------TSSCCCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTGGGB
T ss_pred ----------CCCCCCHHHHHHHHHHHhCchh-cCccCCEEEECCCcCCC
Confidence 1126789999999999886522 23567899998886554
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=188.30 Aligned_cols=227 Identities=14% Similarity=0.067 Sum_probs=166.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++ |+........+.+... ..++.++.+|++|.+++.++++..
T Consensus 13 ~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 13 QRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL----GFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc----CCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999887 5555444444444332 457889999999999998887643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++++ ++.+.++||++||...+. +.
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 157 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK-----------GQ 157 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG-----------SC
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc-----------CC
Confidence 6899999999765332 23445678999999988887665 445667999999987752 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+++.++.+. .++++.+++||.+..+... .........+....
T Consensus 158 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----------~~~~~~~~~~~~~~----------- 216 (256)
T 3ezl_A 158 FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK----------AIRPDVLEKIVATI----------- 216 (256)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----------TSCHHHHHHHHHHS-----------
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccc----------ccCHHHHHHHHhcC-----------
Confidence 456789999999999999888774 3799999999998875200 00111222222211
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+.+.+|+|+++.+++.... ....|++|++.+|..+
T Consensus 217 ------~~~~~~~~~dva~~~~~l~s~~~-~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 217 ------PVRRLGSPDEIGSIVAWLASEES-GFSTGADFSLNGGLHM 255 (256)
T ss_dssp ------TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTSCC
T ss_pred ------CCCCCcCHHHHHHHHHHHhCCcc-cCCcCcEEEECCCEeC
Confidence 11236789999999999886522 3467899999887644
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-25 Score=192.34 Aligned_cols=229 Identities=14% Similarity=0.066 Sum_probs=163.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|+.|+++++.... .......+.. .+.++.++.+|++|.+++.++++..
T Consensus 25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD----AGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHT----TTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998854432 2222222221 2457899999999999998887643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +.
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 169 (269)
T 3gk3_A 101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR-----------GA 169 (269)
T ss_dssp HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------CC
T ss_pred cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc-----------CC
Confidence 6999999999764432 3344566899999999999887643 4567999999987652 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+++.++.++ .++++.+++||.+..+... .+.. ...... + .
T Consensus 170 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-----------~~~~---~~~~~~---~---~--- 226 (269)
T 3gk3_A 170 FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVE-----------AVPQ---DVLEAK---I---L--- 226 (269)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTT-----------C----------CC---S---G---
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhh-----------hhch---hHHHHH---h---h---
Confidence 456789999999999998887774 3799999999999876311 0100 000000 0 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.......+.+++|+|+++.+++... .....|+++++.+|..+|
T Consensus 227 ---~~~~~~~~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 227 ---PQIPVGRLGRPDEVAALIAFLCSDD-AGFVTGADLAINGGMHMS 269 (269)
T ss_dssp ---GGCTTSSCBCHHHHHHHHHHHTSTT-CTTCCSCEEEESTTSCCC
T ss_pred ---hcCCcCCccCHHHHHHHHHHHhCCC-cCCeeCcEEEECCCEeCc
Confidence 0111234678999999999988762 234678999999887653
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=190.20 Aligned_cols=240 Identities=12% Similarity=0.065 Sum_probs=164.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +....++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (280)
T 1xkq_A 6 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS-GVSEKQVNSVVADVTTEDGQDQIINSTLKQF 84 (280)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999866554444443321 000116888999999999998887642
Q ss_pred -CCcEEEEccccccCCc--------cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE--------SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+ ++||++||...+...
T Consensus 85 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 155 (280)
T 1xkq_A 85 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA-------- 155 (280)
T ss_dssp SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC--------
T ss_pred CCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC--------
Confidence 5999999999754322 2234567889999999999887664 34 799999998876311
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
..+...|+.+|.+.+.+++.++.+. .++++++++||.+.+|..... ...................
T Consensus 156 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~~~~~~~~~~~~~~~~~~~------ 222 (280)
T 1xkq_A 156 --QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAM-----GMPDQASQKFYNFMASHKE------ 222 (280)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHT-----TCCHHHHHHHHHHHHHCTT------
T ss_pred --CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCccccc-----ccccccccchHHHHHHHHc------
Confidence 1345689999999999999887663 489999999999998621000 0000000000001000000
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
......+.+.+|+|+++++++.........++++++.+|..+
T Consensus 223 -------~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~~ 264 (280)
T 1xkq_A 223 -------CIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 264 (280)
T ss_dssp -------TCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred -------CCCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCccc
Confidence 001124789999999999988652012456899999887543
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=189.34 Aligned_cols=220 Identities=14% Similarity=0.114 Sum_probs=159.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+... ..++.++.+|++|.+++.++++..
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 72 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG---------------EAKYDHIECDVTNPDQVKASIDHIFKEY 72 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC---------------SCSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc---------------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999987653 236788999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 73 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 141 (264)
T 2dtx_A 73 GSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI-----------ITK 141 (264)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc-----------CCC
Confidence 5999999999754332 3345567899999999999887764 3457999999998763 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcC-CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC-----ceEEec
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDS-EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP-----ALTVFG 222 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g 222 (347)
+...|+.||.+.+.+++.++.++. .+++++++||.+.++ +...+.....+... ....+.
T Consensus 142 ~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (264)
T 2dtx_A 142 NASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTP---------------LVRKAAELEVGSDPMRIEKKISEWG 206 (264)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSH---------------HHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCc---------------chhhhhhcccccCchhhHHHHHHHH
Confidence 567899999999999999988752 289999999998765 11111000000000 000000
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+++++|+|+++++++.... ....++++++.++.
T Consensus 207 ------~~~p~~~~~~p~dvA~~v~~l~s~~~-~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 207 ------HEHPMQRIGKPQEVASAVAFLASREA-SFITGTCLYVDGGL 246 (264)
T ss_dssp ------HHSTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTG
T ss_pred ------hcCCCCCCcCHHHHHHHHHHHhCchh-cCCCCcEEEECCCc
Confidence 00011247899999999999987522 24578999998774
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=187.36 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=160.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+ +.++.++.+|++|.+++.++++..
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-------GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-------CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-------CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998765443333222 347888999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++..+.+++ ++.+ ++||++||...+. +..
T Consensus 79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~-----------~~~ 146 (253)
T 1hxh_A 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWL-----------PIE 146 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTS-----------CCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcC-----------CCC
Confidence 5899999999754322 23445678899999888776654 3445 7999999998763 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--C--CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--S--EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~--~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
+...|+.||.+.+.+++.++.+. . +++++++|||.+++|..... .. ... ..........
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~--~~----~~~---~~~~~~~~~~-------- 209 (253)
T 1hxh_A 147 QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS--LP----KGV---SKEMVLHDPK-------- 209 (253)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHH--SC----TTC---CHHHHBCBTT--------
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhc--cc----hhh---hHHHHhhhhc--------
Confidence 45689999999999999887764 2 79999999999998620000 00 000 0000000000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+.+.+|+|+++.+++.... ....++.+++.+|.
T Consensus 210 -----~~p~~~~~~~~dvA~~~~~l~s~~~-~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 210 -----LNRAGRAYMPERIAQLVLFLASDES-SVMSGSELHADNSI 248 (253)
T ss_dssp -----TBTTCCEECHHHHHHHHHHHHSGGG-TTCCSCEEEESSSC
T ss_pred -----cCccCCCCCHHHHHHHHHHHcCccc-cCCCCcEEEECCCc
Confidence 0111247899999999999987622 23568999998775
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=183.45 Aligned_cols=168 Identities=17% Similarity=0.187 Sum_probs=127.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+|+||||+|+||++++++|+++|++|++++|+....+...+.+ .++.++.+|++|.+++.++++..
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL--------EGALPLPGDVREEGDWARAVAAMEEA 75 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------hhceEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998754433222211 26788999999999998887632
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.++.++++. +++.+.++||++||...+. +.
T Consensus 76 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~ 144 (234)
T 2ehd_A 76 FGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN-----------PF 144 (234)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS-----------CC
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC-----------CC
Confidence 6899999999754322 2334567889999999866554 4455678999999988763 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.+...|+.+|.+.+.+++.++.+. .+++++++|||.+..+
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 186 (234)
T 2ehd_A 145 KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTG 186 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCC
Confidence 456789999999999998877653 3899999999987764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=185.47 Aligned_cols=232 Identities=18% Similarity=0.101 Sum_probs=162.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|+++. |+........+.+... +.++.++.+|++|.+++.+++++.
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL----GRSALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT----TSCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999884 4444444444444332 457889999999999999888643
Q ss_pred --CCcEEEEccccc-cCCc----cccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLK-AVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~-~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||.. .... ..+.+...+++|+.++.++++++...- .++||++||...+. .+..
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------~~~~ 153 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRD----------GGGP 153 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH----------CCST
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhcc----------CCCC
Confidence 699999999965 2221 233446789999999999999987652 24899999987751 1233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
....|+.||.+.+.+.+.++.++ +.+++.++.||.+..+..... ..+..... + .
T Consensus 154 ~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~----------~~~~~~~~-------~---~----- 208 (259)
T 3edm_A 154 GALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTF----------TKPEVRER-------V---A----- 208 (259)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-----------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccc----------cChHHHHH-------H---H-----
Confidence 45689999999999999998885 348999999999887521000 00000000 0 0
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHH
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVL 274 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~ 274 (347)
.......+.+++|+|+++.+++.... ....|++|++.+|...+..
T Consensus 209 -~~~p~~r~~~pedva~~v~~L~s~~~-~~itG~~i~vdGg~~~~~~ 253 (259)
T 3edm_A 209 -GATSLKREGSSEDVAGLVAFLASDDA-AYVTGACYDINGGVLFSEG 253 (259)
T ss_dssp -------CCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESBCSSBC--
T ss_pred -hcCCCCCCcCHHHHHHHHHHHcCccc-cCccCCEEEECCCcCCCCC
Confidence 11223456789999999999987622 3467899999888755443
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=189.37 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=161.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+.... ......+.+|++|.+++.++++..
T Consensus 14 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 14 DKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD--------------VNVSDHFKIDVTNEEEVKEAVEKTTKKY 79 (269)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C--------------TTSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc--------------cCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999876543 125678899999999999887643
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||....... .+.+...+++|+.++.++++++.. .+.++||++||...|. +..
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 148 (269)
T 3vtz_A 80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA-----------ATK 148 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------BCT
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc-----------CCC
Confidence 69999999997654332 234456788999999999887553 4567999999998873 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCC-CCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGED-PRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.||.+.+.+++.++.++ +++++.+++||.+.++........ .................
T Consensus 149 ~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 214 (269)
T 3vtz_A 149 NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGR-------------- 214 (269)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHH--------------
T ss_pred CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHh--------------
Confidence 56789999999999999998875 479999999999987510000000 00000000011111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......+.+++|+|+++.+++.... ....|+++++.+|..
T Consensus 215 ---~~p~~r~~~pedvA~~v~~L~s~~~-~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 215 ---QHPMGRIGRPEEVAEVVAFLASDRS-SFITGACLTVDGGLL 254 (269)
T ss_dssp ---HSTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGG
T ss_pred ---cCCCCCCcCHHHHHHHHHHHhCCcc-CCCcCcEEEECCCcc
Confidence 1112346789999999999987622 346789999988753
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=187.53 Aligned_cols=225 Identities=14% Similarity=0.039 Sum_probs=162.6
Q ss_pred ceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++||||+ |+||+++++.|+++|++|++++|+.. .....+.+.... +.+.++.+|++|.+++.++++..
T Consensus 22 k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~----~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 22 KRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGF----GSDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHT----TCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 689999999 99999999999999999999998764 333333333221 23678999999999998887642
Q ss_pred --CCcEEEEccccccC--------CccccCcchhhhhhhhHHHHHHHHHHHcC---CCeEEEeccccccCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV--------GESVQKPLPYFDNNLTGTITLLEVMAAHG---CKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 --~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~~~~~~---~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||.... ....+.+...+++|+.++.++++++...- .++||++||...+.
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------- 166 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK---------- 166 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS----------
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc----------
Confidence 68999999997542 12234456789999999999999987642 36999999987652
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+......|+.||.+.+.+++.++.++ .++++++++||.+++|.... . .........+.... +
T Consensus 167 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-------~-~~~~~~~~~~~~~~--p----- 230 (285)
T 2p91_A 167 -VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYS-------I-TGFHLLMEHTTKVN--P----- 230 (285)
T ss_dssp -BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC---------C-TTHHHHHHHHHHHS--T-----
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhc-------c-cchHHHHHHHHhcC--C-----
Confidence 33455789999999999999887764 48999999999999873110 0 01112222222211 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+.+++|+|+++++++.... ....+++|++.++.
T Consensus 231 ----------~~~~~~~~dva~~~~~l~s~~~-~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 231 ----------FGKPITIEDVGDTAVFLCSDWA-RAITGEVVHVDNGY 266 (285)
T ss_dssp ----------TSSCCCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTG
T ss_pred ----------CCCCcCHHHHHHHHHHHcCCcc-cCCCCCEEEECCCc
Confidence 0125689999999999886522 23567899998774
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=186.04 Aligned_cols=240 Identities=13% Similarity=0.046 Sum_probs=168.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+....+ ..++.++.+|++|.+++.++++..
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP--GARLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999987766655555544211 235888999999999998887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 154 (265)
T 3lf2_A 86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ-----------PEP 154 (265)
T ss_dssp CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-----------CCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-----------CCC
Confidence 6899999999754432 2344567899999999999988754 3456899999987752 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.||.+.+.+.+.++.++ .++++.+++||.+..|..................+.........
T Consensus 155 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 223 (265)
T 3lf2_A 155 HMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQ----------- 223 (265)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTT-----------
T ss_pred CchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccC-----------
Confidence 56789999999999999888775 37999999999988751000000000000000011111111000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....+...+|+|+++++++.... ....|+++++.+|..
T Consensus 224 ----~p~~r~~~pedvA~~v~fL~s~~~-~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 224 ----IPLGRLGKPIEAARAILFLASPLS-AYTTGSHIDVSGGLS 262 (265)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHHSGGG-TTCCSEEEEESSSCC
T ss_pred ----CCcCCCcCHHHHHHHHHHHhCchh-cCcCCCEEEECCCCc
Confidence 011236789999999999987522 346789999987753
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=190.47 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=160.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+.. ..++.++.+|++|.+++.++++..
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA-----YGDCQAIPADLSSEAGARRLAQALGELS 103 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT-----SSCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999876554433333321 126788899999999998887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCC----CeEEEeccccccCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGC----KNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~----~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+. ++||++||...+..
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~--------- 174 (276)
T 2b4q_A 104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA--------- 174 (276)
T ss_dssp SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC---------
Confidence 6999999999754322 233456788999999988877654 3344 79999999887632
Q ss_pred CCCCCCC-chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHc-CCCCceE
Q 040584 145 FPLQAMN-PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAV-GRRPALT 219 (347)
Q Consensus 145 ~~~~~~~-~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 219 (347)
..... .|+.||.+.+.+++.++.+. .++++++++||.+..+.. ..+.. ....... ...
T Consensus 175 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~-----------~~~~~~~~~~~~~~~~~---- 237 (276)
T 2b4q_A 175 --MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMT-----------RHIANDPQALEADSASI---- 237 (276)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTT-----------HHHHHCHHHHHHHHHTS----
T ss_pred --CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcch-----------hhcchhHHHHHHhhcCC----
Confidence 22334 89999999999999888764 389999999999887520 00100 1111111 010
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+.+.+|+|+++++++.... ....++++++.+|.
T Consensus 238 ------------p~~r~~~p~dvA~~v~~l~s~~~-~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 238 ------------PMGRWGRPEEMAALAISLAGTAG-AYMTGNVIPIDGGF 274 (276)
T ss_dssp ------------TTSSCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTT
T ss_pred ------------CCCCcCCHHHHHHHHHHHhCccc-cCCCCCEEEeCCCc
Confidence 01236789999999999987622 24578999998774
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=190.24 Aligned_cols=233 Identities=20% Similarity=0.150 Sum_probs=161.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+........+.+.... .+.++.++.+|++|.+++.++++..
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc--CCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999999999999999987655443333332211 1236788999999999999887642
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHH----HHHHcC---CCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLE----VMAAHG---CKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~----~~~~~~---~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+||||||... .+.+...+++|+.++..+.+ .+++.+ .++||++||...+. +....
T Consensus 86 ~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~ 150 (267)
T 2gdz_A 86 RLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM-----------PVAQQ 150 (267)
T ss_dssp CCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-----------CCTTC
T ss_pred CCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC-----------CCCCC
Confidence 5899999999753 34567889999997766554 444432 56999999998763 23345
Q ss_pred CchhhhHHHHHHHHHHHh--hh--cCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCce-EEecccC
Q 040584 151 NPYGRSKLFIEEICRDVH--RS--DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPAL-TVFGTDY 225 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~--~~--~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 225 (347)
..|+.||.+.+.+++.++ .+ ..++++++++||.+.++... .+... ... +....+ ....
T Consensus 151 ~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~--~~~-~~~~~~~~~~~--- 213 (267)
T 2gdz_A 151 PVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILE-----------SIEKE--ENM-GQYIEYKDHIK--- 213 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHH-----------GGGCH--HHH-GGGGGGHHHHH---
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhh-----------ccccc--ccc-chhhhHHHHHH---
Confidence 689999999999998742 22 24899999999998875100 00000 000 000000 0000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
.......+++++|+|+++++++.. ....+++|++.+++..++.|
T Consensus 214 ---~~~~~~~~~~~~dvA~~v~~l~s~---~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 214 ---DMIKYYGILDPPLIANGLITLIED---DALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp ---HHHHHHCCBCHHHHHHHHHHHHHC---TTCSSCEEEEETTTEEEECC
T ss_pred ---HHhccccCCCHHHHHHHHHHHhcC---cCCCCcEEEecCCCcccccC
Confidence 001122468999999999999986 34678999999888777665
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=183.81 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=164.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|+++.++.. ..+...+.+... +.++.++.+|++|.+++.+++++.
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA----GGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999866543 333334444332 457889999999999998887643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... +.+.+...+++|+.++.++++++... +.++||++||....- .+..+
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~----------~~~~~ 176 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL----------VPWPG 176 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC----------CCSTT
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc----------CCCCC
Confidence 6999999999764433 33455678999999999999988765 346999999965431 12345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+.+.++.++ .++++.+++||.+.++.... ..... ....... +
T Consensus 177 ~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~--------~~~~~---~~~~~~~--~---------- 233 (271)
T 3v2g_A 177 ISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPA--------DGDHA---EAQRERI--A---------- 233 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCS--------SCSSH---HHHHHTC--T----------
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccc--------cchhH---HHHHhcC--C----------
Confidence 6789999999999999888775 37999999999999863110 00111 1111111 0
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+|+++.+++... .....|+++++.+|.
T Consensus 234 -----~~r~~~pedvA~~v~fL~s~~-~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 234 -----TGSYGEPQDIAGLVAWLAGPQ-GKFVTGASLTIDGGA 269 (271)
T ss_dssp -----TSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTT
T ss_pred -----CCCCCCHHHHHHHHHHHhCcc-cCCccCCEEEeCcCc
Confidence 112568999999999988652 234678999998764
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=187.13 Aligned_cols=216 Identities=16% Similarity=0.123 Sum_probs=158.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+ .+.++.+|++|.+++.+++++.
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~~Dl~d~~~v~~~~~~~~~~~ 85 (253)
T 2nm0_A 21 SRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE---------------GFLAVKCDITDTEQVEQAYKEIEETH 85 (253)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT---------------TSEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc---------------cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999998765432 3678899999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 86 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~ 154 (253)
T 2nm0_A 86 GPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL-----------GSA 154 (253)
T ss_dssp CSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC-----------CHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC-----------CCC
Confidence 5899999999754322 4456778999999999999886553 3567999999987642 222
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+.+.++.+. .++++++++||.+..+... ..... .........
T Consensus 155 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~-------~~~~~---~~~~~~~~~------------ 212 (253)
T 2nm0_A 155 GQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTK-------VLTDE---QRANIVSQV------------ 212 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-------------------CHHHHHTTC------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchh-------hcCHH---HHHHHHhcC------------
Confidence 34679999999999999888774 4799999999988765210 00000 011111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+++.+|+|+++.+++.... ....++.+++.+|..+
T Consensus 213 -----p~~~~~~p~dvA~~i~~l~s~~~-~~~tG~~i~vdGG~~~ 251 (253)
T 2nm0_A 213 -----PLGRYARPEEIAATVRFLASDDA-SYITGAVIPVDGGLGM 251 (253)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTTC
T ss_pred -----CCCCCcCHHHHHHHHHHHhCccc-cCCcCcEEEECCcccc
Confidence 01236899999999999987622 2457899999877543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=189.35 Aligned_cols=237 Identities=19% Similarity=0.125 Sum_probs=164.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+... .+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999987653 22223333332 457888999999999988877532
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+.. ...+
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------~~~~ 174 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK----------AVPK 174 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS----------SCSS
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC----------CCCC
Confidence 6999999999764322 23455678999999999999998876 5679999999876521 1113
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCC--CCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGED--PRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
...|+.||.+.+.+++.++.+. .++++++++||.+.++........ +.. ...-......+....
T Consensus 175 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------- 242 (283)
T 1g0o_A 175 HAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNG-ENLSNEEVDEYAAVQ----------- 242 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTC-TTCCHHHHHHHHHHH-----------
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccc-cccCHHHHHHHHhhc-----------
Confidence 5689999999999999887764 379999999999987520000000 000 000001111111100
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
......+.+.+|+|+++.+++.... ....|+++++.+|.
T Consensus 243 ----~~p~~r~~~p~dvA~~v~~l~s~~~-~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 243 ----WSPLRRVGLPIDIARVVCFLASNDG-GWVTGKVIGIDGGA 281 (283)
T ss_dssp ----SCTTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC
T ss_pred ----CCCCCCCcCHHHHHHHHHHHhCccc-cCcCCCEEEeCCCc
Confidence 0011236789999999999997522 24578999998774
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=184.52 Aligned_cols=208 Identities=13% Similarity=0.121 Sum_probs=149.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA----GGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 378999999999999999999999999999999888877766666553 457889999999999999888643
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +...
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 151 (252)
T 3h7a_A 83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR-----------GGSG 151 (252)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC-----------CCTT
T ss_pred CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC-----------CCCC
Confidence 6899999999765432 234456789999999999888753 44567999999987752 3445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceE-EEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKI-ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~-~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.||.+.+.+.+.++.++ .++++ .++.||.+..+... ...+ ... ..+.
T Consensus 152 ~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~-----------~~~~---~~~----~~~~------- 206 (252)
T 3h7a_A 152 FAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVR-----------ERRE---QMF----GKDA------- 206 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhh-----------ccch---hhh----hhhh-------
Confidence 6789999999999999888775 37888 78999888765210 0000 000 0000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
...... ++..+|+|+++++++..
T Consensus 207 --~~~~~~-~~~pedvA~~~~~l~s~ 229 (252)
T 3h7a_A 207 --LANPDL-LMPPAAVAGAYWQLYQQ 229 (252)
T ss_dssp ----------CCHHHHHHHHHHHHHC
T ss_pred --hcCCcc-CCCHHHHHHHHHHHHhC
Confidence 111223 78999999999999986
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=179.17 Aligned_cols=219 Identities=17% Similarity=0.139 Sum_probs=162.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.+...+.+... .+.++.++.+|++|.+++.+++++.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQE---QGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh---cCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999877665555554422 2457889999999999999888743
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+++...+++|+.++.++++++... +.+++|++||...+. +...
T Consensus 79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~-----------~~~~ 147 (235)
T 3l77_A 79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR-----------LIPY 147 (235)
T ss_dssp SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS-----------CCTT
T ss_pred CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc-----------cCCC
Confidence 6999999999765433 34455678999999999999887542 234788887766542 2234
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
...|+.+|.+.+.+++.+..+..++++++++||.+-.+..... ..
T Consensus 148 ~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~-------------------~~---------------- 192 (235)
T 3l77_A 148 GGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK-------------------PG---------------- 192 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC-------------------SC----------------
T ss_pred cchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc-------------------CC----------------
Confidence 4689999999999999986666699999999998876521000 00
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......++..+|+|+++.+++..... ...++++...++++
T Consensus 193 ~~~~~~~~~p~dva~~v~~l~~~~~~-~~~~~~~~~~~~~~ 232 (235)
T 3l77_A 193 KPKEKGYLKPDEIAEAVRCLLKLPKD-VRVEELMLRSVYQR 232 (235)
T ss_dssp CCGGGTCBCHHHHHHHHHHHHTSCTT-CCCCEEEECCTTSC
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCC-CccceEEEeecccC
Confidence 00111367899999999999987332 34567666655553
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=190.21 Aligned_cols=228 Identities=15% Similarity=0.137 Sum_probs=167.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC---eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY---KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
+|+++||||+|+||++++++|+++|+ .|++++|+....+...+.+..... +.++.++.+|++|.+++.++++..
T Consensus 33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP--NAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT--TCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999988 999999987766655555544311 346888999999999999998754
Q ss_pred ----CCcEEEEcccccc-CC----ccccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ----KFDAVIHFAGLKA-VG----ESVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ----~~d~vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||... .. ...+++...+++|+.++.++++++ ++.+.++||++||...+.
T Consensus 111 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~---------- 180 (287)
T 3rku_A 111 QEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD---------- 180 (287)
T ss_dssp GGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC----------
Confidence 6999999999653 11 133456778999999999998887 445667999999987752
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+......|+.||.+.+.+.+.++.+. .++++.+++||.+..+... ................
T Consensus 181 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~-------~~~~~~~~~~~~~~~~--------- 243 (287)
T 3rku_A 181 -AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSL-------VRYRGNEEQAKNVYKD--------- 243 (287)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHH-------HHTTTCHHHHHHHHTT---------
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcccc-------ccccCcHHHHHHhhcc---------
Confidence 34456789999999999999998885 4799999999998875100 0000000111111110
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
..++..+|+|+++++++.... ....++++++.+++.
T Consensus 244 -----------~~p~~pedvA~~v~~l~s~~~-~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 244 -----------TTPLMADDVADLIVYATSRKQ-NTVIADTLIFPTNQA 279 (287)
T ss_dssp -----------SCCEEHHHHHHHHHHHHTSCT-TEEEEEEEEEETTEE
T ss_pred -----------cCCCCHHHHHHHHHHHhCCCC-CeEecceEEeeCCCC
Confidence 113489999999999998622 234678888877764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=186.18 Aligned_cols=214 Identities=20% Similarity=0.198 Sum_probs=155.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+|+||||+|+||++++++|+++|++|++++|+........+.+... +.++.++.+|++|.+++.++++..
T Consensus 32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ----GFDAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999877666555555443 457889999999999999887643
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+.+...+++|+.++.++++++.. .+ .++||++||...+. +..
T Consensus 108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 176 (301)
T 3tjr_A 108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV-----------PNA 176 (301)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-----------CCT
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------CCC
Confidence 6999999999764432 3344567899999999999887643 34 46999999988762 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc---CC-CCceEEec
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV---GR-RPALTVFG 222 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~g 222 (347)
....|+.||.+.+.+++.++.+. .++++++++||.+..+ +..-...... +. ......++
T Consensus 177 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 241 (301)
T 3tjr_A 177 GLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETK---------------LVSNSERIRGADYGMSATPEGAFG 241 (301)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSS---------------HHHHHHHHC---------------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccc---------------cccccccccchhhccccChhhhcc
Confidence 56789999999999998887765 3799999999988765 2211111000 00 00111111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.......+++++|+|++++.+++.
T Consensus 242 ------~~~~~~~~~~pedvA~~i~~~l~~ 265 (301)
T 3tjr_A 242 ------PLPTQDESVSADDVARLTADAILA 265 (301)
T ss_dssp -------------CCCHHHHHHHHHHHHHH
T ss_pred ------ccccccCCCCHHHHHHHHHHHHhc
Confidence 122345689999999999999988
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=181.59 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=157.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+... ..+.+ ++..+.+|++| +++.++++..
T Consensus 1 ~~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~---------~~~~~~~D~~~-~~~~~~~~~~~~~ 67 (239)
T 2ekp_A 1 MERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSL---------GAVPLPTDLEK-DDPKGLVKRALEA 67 (239)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHH---------TCEEEECCTTT-SCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhh---------CcEEEecCCch-HHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997654 11211 26788999999 7776665421
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+... +.
T Consensus 68 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------~~ 138 (239)
T 2ekp_A 68 LGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG---------GP 138 (239)
T ss_dssp HTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------TT
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC---------CC
Confidence 6999999999754322 234556788999999999888764 4467799999999887421 11
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.+...|+.||.+.+.+.+.++.+. .++++++++||.+.++... ... ........... ..
T Consensus 139 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-------~~~-~~~~~~~~~~~-~~---------- 199 (239)
T 2ekp_A 139 VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTL-------PLR-QNPELYEPITA-RI---------- 199 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH-------HHH-TCHHHHHHHHT-TC----------
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhh-------ccc-cCHHHHHHHHh-cC----------
Confidence 456789999999999999887764 3799999999999876200 000 00011112211 10
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+.+.+|+|+++.+++.... ....++.+++.+|.
T Consensus 200 ------p~~~~~~~~dvA~~~~~l~s~~~-~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 200 ------PMGRWARPEEIARVAAVLCGDEA-EYLTGQAVAVDGGF 236 (239)
T ss_dssp ------TTSSCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTT
T ss_pred ------CCCCCcCHHHHHHHHHHHcCchh-cCCCCCEEEECCCc
Confidence 11236789999999999886522 23578899997764
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=179.84 Aligned_cols=219 Identities=16% Similarity=0.190 Sum_probs=156.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+ ..++.++.+|++|.+++.++++..
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 73 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-------GDNLYIAQLDVRNRAAIEEMLASLPAEWC 73 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------cCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999998765443333322 246888999999999999998753
Q ss_pred CCcEEEEcccccc-CC----ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKA-VG----ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||... .. .+.+++...+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~ 142 (248)
T 3asu_A 74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW-----------PYA 142 (248)
T ss_dssp CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------CCT
T ss_pred CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc-----------CCC
Confidence 6999999999752 11 1234556789999999999888765 44567999999988752 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccC-CCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVG-AHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.||.+.+.+++.++.+. .++++++++||.+.| +... .. . .+......
T Consensus 143 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~-----------~~---~----~~~~~~~~------ 198 (248)
T 3asu_A 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSN-----------VR---F----KGDDGKAE------ 198 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC----------------------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchh-----------hc---c----cCchHHHH------
Confidence 56789999999999999988774 379999999999984 4100 00 0 00000000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.......++..+|+|+++++++.. .....++.+.+.+.
T Consensus 199 ---~~~~~~~~~~p~dvA~~v~~l~s~--~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 199 ---KTYQNTVALTPEDVSEAVWWVSTL--PAHVNINTLEMMPV 236 (248)
T ss_dssp ---------CCBCHHHHHHHHHHHHHS--CTTCCCCEEEECCT
T ss_pred ---HHHhccCCCCHHHHHHHHHHHhcC--CccceeeEEEEccc
Confidence 000011246899999999999986 22356677776544
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=185.59 Aligned_cols=238 Identities=15% Similarity=0.134 Sum_probs=165.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc------------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN------------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAA 69 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (347)
+|+++||||+|+||++++++|+++|++|++++|+.. ......+.+.. .+.++.++.+|++|.++
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA----LGRRIIASQVDVRDFDA 103 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH----TTCCEEEEECCTTCHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHh----cCCceEEEECCCCCHHH
Confidence 378999999999999999999999999999988732 22222223322 24578899999999999
Q ss_pred HHHHHccC-----CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccC
Q 040584 70 LEVVFAGT-----KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYG 134 (347)
Q Consensus 70 ~~~~~~~~-----~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg 134 (347)
+.++++.. ++|+||||||...... +.+.+...+++|+.++.++++++... + .++||++||...+.
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~ 183 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR 183 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence 99887632 6999999999754332 33455678999999999998876542 2 56999999988762
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCC---CCCCCCCccHHHHHH
Q 040584 135 WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGE---DPRGIPNNLMPFVTQ 209 (347)
Q Consensus 135 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~---~~~~~~~~~~~~~~~ 209 (347)
+......|+.||.+.+.+.+.++.++ .++++.+++||.+..|....... ...............
T Consensus 184 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (299)
T 3t7c_A 184 -----------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQV 252 (299)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHH
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHH
Confidence 34456789999999999999888775 37999999999998863110000 000000000000000
Q ss_pred H-HcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 210 V-AVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 210 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
. .... ... ..+...+|+|+++++++.... ....|+++++.+|..+
T Consensus 253 ~~~~~~---------------~~p-~r~~~pedvA~~v~fL~s~~a-~~itG~~i~vdGG~~l 298 (299)
T 3t7c_A 253 ASRQMH---------------VLP-IPYVEPADISNAILFLVSDDA-RYITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHS---------------SSS-CSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGG
T ss_pred Hhhhhc---------------ccC-cCCCCHHHHHHHHHHHhCccc-ccCcCCEEeeCCCccc
Confidence 0 0000 001 246789999999999997522 3467899999887643
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=184.25 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=159.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.+. +.. -.++.++.+|++|.+++.++++.. ++|
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-------~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id 76 (246)
T 2ag5_A 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE-------LEK--YPGIQTRVLDVTKKKQIDQFANEVERLD 76 (246)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG-------GGG--STTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHh--ccCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 3789999999999999999999999999999987543221 110 126788999999999998877644 699
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC-CCC
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ-AMN 151 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~-~~~ 151 (347)
+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +.. +..
T Consensus 77 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~ 145 (246)
T 2ag5_A 77 VLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV-----------KGVVNRC 145 (246)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT-----------BCCTTBH
T ss_pred EEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCc-----------CCCCCCc
Confidence 9999999754332 233455688999999999988765 34567999999987652 112 456
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.+|.+.+.+++.++.+. .+++++++|||.+++|..... ... ...............
T Consensus 146 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~--~~~~~~~~~~~~~~~--------------- 206 (246)
T 2ag5_A 146 VYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQER--IQA--RGNPEEARNDFLKRQ--------------- 206 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHH--HHH--SSSHHHHHHHHHHTC---------------
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhh--hhc--ccCcHHHHHHHHhcC---------------
Confidence 89999999999999887764 389999999999998620000 000 000000111111110
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+++.+|+|+++.+++.... ....++++++.+|.
T Consensus 207 --~~~~~~~~~dvA~~v~~l~s~~~-~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 207 --KTGRFATAEEIAMLCVYLASDES-AYVTGNPVIIDGGW 243 (246)
T ss_dssp --TTSSCEEHHHHHHHHHHHHSGGG-TTCCSCEEEECTTG
T ss_pred --CCCCCCCHHHHHHHHHHHhCccc-cCCCCCEEEECCCc
Confidence 01136899999999999986522 23578999998774
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=188.79 Aligned_cols=235 Identities=17% Similarity=0.123 Sum_probs=168.2
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+|+||||+ |+||++++++|+++|++|++++|+....+ ..+.+... .+++.++.+|++|.+++.++++..
T Consensus 14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKD-RITEFAAE----FGSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHHHH----TTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHH-HHHHHHHH----cCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 4899999999 99999999999999999999998844332 33333322 235788999999999999888643
Q ss_pred ---CCcEEEEccccccC----C-----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV----G-----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 ---~~d~vih~a~~~~~----~-----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+||||||.... . ...+.+...+++|+.++.++++++... ..++||++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 159 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER--------- 159 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS---------
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc---------
Confidence 68999999997543 1 233445678999999999999988764 234899999988762
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+......|+.||.+.+.+++.++.++ .++++.+++||.+..+... .. ..............
T Consensus 160 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-------~~-~~~~~~~~~~~~~~------- 222 (271)
T 3ek2_A 160 --AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAAS-------GI-KSFGKILDFVESNS------- 222 (271)
T ss_dssp --BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----C-------CC-HHHHHHHHHHHHHS-------
T ss_pred --CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhh-------cc-cchHHHHHHHHhcC-------
Confidence 34456789999999999999888764 4799999999999875210 00 00011222222211
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHH
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVA 278 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~ 278 (347)
....+...+|+|+++++++... .....|+++++.+|...++.++++
T Consensus 223 ----------~~~~~~~pedva~~i~~l~s~~-~~~~tG~~i~vdgG~~~~~~~~~~ 268 (271)
T 3ek2_A 223 ----------PLKRNVTIEQVGNAGAFLLSDL-ASGVTAEVMHVDSGFNAVVGGMAG 268 (271)
T ss_dssp ----------TTSSCCCHHHHHHHHHHHHSGG-GTTCCSEEEEESTTGGGBCCCC--
T ss_pred ----------CcCCCCCHHHHHHHHHHHcCcc-cCCeeeeEEEECCCeeeehhhhhh
Confidence 1123568999999999998752 234678999999998877766543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-23 Score=183.16 Aligned_cols=243 Identities=14% Similarity=0.140 Sum_probs=166.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch------------hHHHHHHHHHhhccCCCCeEEEecCCCCHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA------------SEIAVAKVKELAGYQGNNMTFHKLDLRDKAA 69 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (347)
+|+++||||+|+||++++++|+++|++|++++|+... .....+.+.......+.++.++.+|++|.++
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 90 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYDA 90 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHHH
Confidence 3789999999999999999999999999999886321 1112222222222235678899999999999
Q ss_pred HHHHHccC-----CCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHHc----C-CCeEEEeccccccC
Q 040584 70 LEVVFAGT-----KFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAAH----G-CKNLVFSSSATAYG 134 (347)
Q Consensus 70 ~~~~~~~~-----~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~~----~-~~~iv~~SS~~~yg 134 (347)
+.++++.. ++|+||||||...... +.+.+...+++|+.++.++++++... + .++||++||...+.
T Consensus 91 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (286)
T 3uve_A 91 LKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLK 170 (286)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhhcc
Confidence 99887632 6999999999754332 33456678999999999998876542 3 45999999988762
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCC---CCCCCCCccHHHHHH
Q 040584 135 WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGE---DPRGIPNNLMPFVTQ 209 (347)
Q Consensus 135 ~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~---~~~~~~~~~~~~~~~ 209 (347)
+......|+.||.+.+.+.+.++.++ .++++.++.||.+..|.....+. ...............
T Consensus 171 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (286)
T 3uve_A 171 -----------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAP 239 (286)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHH
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhhHHH
Confidence 34456789999999999999888774 37999999999998863110000 000000000000011
Q ss_pred HHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 210 VAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 210 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
..... .... ..+.+.+|+|+++++++.... ....|+++++.+|..+
T Consensus 240 ~~~~~--------------~~~p-~r~~~p~dvA~~v~fL~s~~a-~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 240 ICQMF--------------HTLP-IPWVEPIDISNAVLFFASDEA-RYITGVTLPIDAGSCL 285 (286)
T ss_dssp HHHTT--------------CSSS-CSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGG
T ss_pred HHHhh--------------hccC-CCcCCHHHHHHHHHHHcCccc-cCCcCCEEeECCcccc
Confidence 00000 0111 347899999999999997522 3467899999887644
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=188.28 Aligned_cols=223 Identities=18% Similarity=0.141 Sum_probs=163.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-------GKKARAIAADISDPGSVKALFAEIQALT 78 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-------CTTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 479999999999999999999999999999998765554433332 357889999999999999888643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcC-CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHG-CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... +.+.+...+++|+.++.+++++ +++.+ .++||++||...+. +.
T Consensus 79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 147 (247)
T 3rwb_A 79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA-----------GT 147 (247)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH-----------TC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc-----------CC
Confidence 6999999999765432 3345567899999999999887 44545 57999999987762 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.||.+.+.+.+.++.+. .++++.+++||.+..+... .........+.....
T Consensus 148 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~-------~~~~~~~~~~~~~~~------------- 207 (247)
T 3rwb_A 148 PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVK-------ASPHNEAFGFVEMLQ------------- 207 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-------TSGGGGGHHHHHHHS-------------
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCcccc-------ccChhHHHHHHhccc-------------
Confidence 456789999999999999888774 3799999999998865210 000001111111000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....+...+|+|+++.+++.... ....|+++++.+|.
T Consensus 208 ------~~~r~~~pedva~~v~~L~s~~~-~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 208 ------AMKGKGQPEHIADVVSFLASDDA-RWITGQTLNVDAGM 244 (247)
T ss_dssp ------SSCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTS
T ss_pred ------ccCCCcCHHHHHHHHHHHhCccc-cCCCCCEEEECCCc
Confidence 11125679999999999987622 34678999998774
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-24 Score=189.30 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=166.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-YQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+........+.+..... ..+.++.++.+|++|.+++.++++..
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 97 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDT 97 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999986655554444433111 12457889999999999999888642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+ +.
T Consensus 98 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~------------~~ 165 (303)
T 1yxm_A 98 FGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA------------GF 165 (303)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT------------CC
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeeccc------------CC
Confidence 5999999999643322 22345668899999999999987652 34689999998732 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.+|.+.+.+.+.++.+. .+++++++|||.++||... . ... ...+ ........
T Consensus 166 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----~-~~~-~~~~~~~~~~~~~----------- 227 (303)
T 1yxm_A 166 PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAV-----E-NYG-SWGQSFFEGSFQK----------- 227 (303)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGG-----T-TSG-GGGGGGGTTGGGG-----------
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhh-----h-hcc-ccchHHHHHHHhc-----------
Confidence 345689999999999999888774 3799999999999997200 0 000 0000 01110000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.....+++++|+|+++++++.... ....++.+++.+|...+
T Consensus 228 ------~p~~~~~~~~dvA~~i~~l~~~~~-~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 228 ------IPAKRIGVPEEVSSVVCFLLSPAA-SFITGQSVDVDGGRSLY 268 (303)
T ss_dssp ------STTSSCBCTHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGC
T ss_pred ------CcccCCCCHHHHHHHHHHHhCccc-ccCCCcEEEECCCeecc
Confidence 011237899999999999986522 23568999998886544
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=184.85 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=163.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc----------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN----------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
|+++||||+|+||++++++|+++|++|++++|... ..... +.........+.++.++.+|++|.+++.+
T Consensus 12 k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 90 (277)
T 3tsc_A 12 RVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDL-SETVRLVEAANRRIVAAVVDTRDFDRLRK 90 (277)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHH-HHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHH-HHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 78999999999999999999999999999988421 11111 11111111234678899999999999998
Q ss_pred HHccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCC
Q 040584 73 VFAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKV 138 (347)
Q Consensus 73 ~~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~ 138 (347)
++++. ++|+||||||...... +.+.++..+++|+.++.++++++.. .+ .++||++||...+.
T Consensus 91 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~---- 166 (277)
T 3tsc_A 91 VVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK---- 166 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC----
Confidence 87642 6999999999765432 3345567899999999999887543 33 45999999988762
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
+......|+.||.+.+.+.+.++.++ .++++.+++||.+..+.. .................
T Consensus 167 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~----------~~~~~~~~~~~~~~~~~ 229 (277)
T 3tsc_A 167 -------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMG----------SGDMVTAVGQAMETNPQ 229 (277)
T ss_dssp -------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGG----------SHHHHHHHHHHHHTCGG
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcc----------cchhhhhhhhcccccHH
Confidence 33445789999999999999888875 379999999999987620 00011111111101100
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...... ..... .+.+.+|+|+++++++.... ....|+++++.+|.
T Consensus 230 ~~~~~~------~~~p~-r~~~pedvA~~v~~L~s~~~-~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 230 LSHVLT------PFLPD-WVAEPEDIADTVCWLASDES-RKVTAAQIPVDQGS 274 (277)
T ss_dssp GTTTTC------CSSSC-SCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTG
T ss_pred HHHHhh------hccCC-CCCCHHHHHHHHHHHhCccc-cCCcCCEEeeCCCc
Confidence 000000 11111 37899999999999997622 34678999998774
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=183.23 Aligned_cols=211 Identities=18% Similarity=0.121 Sum_probs=154.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+|+||||+|+||++++++|+++|++|++++|+........+.+... +.++.++.+|++|.+++.++++..
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA----GGEAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----CCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999876665555555443 457889999999999999887642
Q ss_pred CCcEEEEcccccc-CC----ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKA-VG----ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||... .. ...+.+...+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 174 (262)
T 3rkr_A 106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN-----------PVA 174 (262)
T ss_dssp CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC-----------CCT
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC-----------CCC
Confidence 6999999999732 11 2334456789999999999988754 34567999999988752 445
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
+...|+.+|.+.+.+++.++.+. .++++.+++||.+..+. ......
T Consensus 175 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~------------------~~~~~~-------------- 222 (262)
T 3rkr_A 175 DGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEF------------------GVGLSA-------------- 222 (262)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCc------------------cccccc--------------
Confidence 56789999999999999887763 47999999999887641 000000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEE
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYN 264 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~n 264 (347)
......++..+|+|+++.+++..... ...++++.
T Consensus 223 ---~~~~~~~~~p~dvA~~v~~l~s~~~~-~~~g~~~i 256 (262)
T 3rkr_A 223 ---KKSALGAIEPDDIADVVALLATQADQ-SFISEVLV 256 (262)
T ss_dssp ---------CCCHHHHHHHHHHHHTCCTT-CCEEEEEE
T ss_pred ---ccccccCCCHHHHHHHHHHHhcCccc-cccCcEEe
Confidence 01122367899999999999976322 33445443
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=186.97 Aligned_cols=174 Identities=18% Similarity=0.173 Sum_probs=134.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||+++++.|+++|++|++++|+....+...+.+.... ....+.++.+|++|.+++.++++..
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC--CCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999999999997665554444443321 1235778899999999998887632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhH----HHHHHHHHHHcCC--CeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTG----TITLLEVMAAHGC--KNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~----~~~l~~~~~~~~~--~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+|||+||...... ..+.+...+++|+.+ ++.+++.+++.+. ++||++||...+.. .+.
T Consensus 111 ~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~---------~~~ 181 (279)
T 1xg5_A 111 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---------LPL 181 (279)
T ss_dssp CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------CSC
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc---------CCC
Confidence 6999999999754332 233456788999999 5566667777665 79999999987632 133
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~ 187 (347)
.+...|+.+|.+.+.+++.++.+. .++++++++||.+.++
T Consensus 182 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 225 (279)
T 1xg5_A 182 SVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ 225 (279)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccch
Confidence 445689999999999998877653 4799999999998875
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=190.25 Aligned_cols=228 Identities=12% Similarity=0.020 Sum_probs=166.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+... +.++.++.+|++|.+++.++++..
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 33 GRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS----GGTAQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT----TCCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 378999999999999999999999999999999888777666665543 457889999999999888877632
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+++...+++|+.++.++++++. +.+.++||++||...+. +..+
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-----------~~~~ 177 (275)
T 4imr_A 109 PVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR-----------PKSV 177 (275)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCTT
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC-----------CCCC
Confidence 6999999999754332 334456689999999999988763 44567999999988763 3344
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.||.+.+.+++.++.++ .++++.+++||.+..+... ..................
T Consensus 178 ~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-------~~~~~~~~~~~~~~~~~~------------ 238 (275)
T 4imr_A 178 VTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNA-------DRRAQDPEGWDEYVRTLN------------ 238 (275)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHH-------HHHHHCHHHHHHHHHHHS------------
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccc-------cccccChHHHHHHHhhcC------------
Confidence 5679999999999999888775 3799999999998765100 000000001111111000
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
....+...+|+|+++++++.... ....|+++++.+|
T Consensus 239 ----p~~r~~~pedvA~~v~fL~s~~a-~~itG~~i~vdGG 274 (275)
T 4imr_A 239 ----WMGRAGRPEEMVGAALFLASEAC-SFMTGETIFLTGG 274 (275)
T ss_dssp ----TTCSCBCGGGGHHHHHHHHSGGG-TTCCSCEEEESSC
T ss_pred ----ccCCCcCHHHHHHHHHHHcCccc-CCCCCCEEEeCCC
Confidence 01125678999999999987622 3467899999776
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=186.16 Aligned_cols=221 Identities=19% Similarity=0.154 Sum_probs=159.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|..... .+. + ..++.++.+|++|.+++.++++..
T Consensus 9 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~---~----~~~~~~~~~D~~~~~~v~~~~~~~~~~g 78 (257)
T 3tl3_A 9 DAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV---VAD---L----GDRARFAAADVTDEAAVASALDLAETMG 78 (257)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH---HHH---T----CTTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH---HHh---c----CCceEEEECCCCCHHHHHHHHHHHHHhC
Confidence 37899999999999999999999999999999854322 111 1 457889999999999998887632
Q ss_pred CCcEEEEccccccCC--------ccccCcchhhhhhhhHHHHHHHHHHHc------------CCCeEEEeccccccCCCC
Q 040584 78 KFDAVIHFAGLKAVG--------ESVQKPLPYFDNNLTGTITLLEVMAAH------------GCKNLVFSSSATAYGWPK 137 (347)
Q Consensus 78 ~~d~vih~a~~~~~~--------~~~~~~~~~~~~nv~~~~~l~~~~~~~------------~~~~iv~~SS~~~yg~~~ 137 (347)
++|+||||||..... .+.+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--- 155 (257)
T 3tl3_A 79 TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD--- 155 (257)
T ss_dssp CEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C---
T ss_pred CCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC---
Confidence 699999999964321 234456778999999999999887653 234899999987752
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCC
Q 040584 138 VVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR 215 (347)
Q Consensus 138 ~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (347)
+......|+.||.+.+.+++.++.++ .++++.+++||.+..+.. ..+.+..........
T Consensus 156 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~-----------~~~~~~~~~~~~~~~ 216 (257)
T 3tl3_A 156 --------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLL-----------ASLPEEARASLGKQV 216 (257)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC--------------CHHHHHHHHHTS
T ss_pred --------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhh-----------hhccHHHHHHHHhcC
Confidence 22345689999999999999888774 379999999999987621 111122221111110
Q ss_pred CceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 216 PALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
+ . ...+.+.+|+|+++++++.. +...|+++++.+|..++
T Consensus 217 ---~---------~---~~r~~~p~dva~~v~~l~s~---~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 217 ---P---------H---PSRLGNPDEYGALAVHIIEN---PMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp ---S---------S---SCSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTC---
T ss_pred ---C---------C---CCCccCHHHHHHHHHHHhcC---CCCCCCEEEECCCccCC
Confidence 0 0 02367899999999999986 46788999998886544
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=183.25 Aligned_cols=223 Identities=15% Similarity=0.189 Sum_probs=156.0
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+....+...+.+.. ..++.++.+|++|.+++.++++..
T Consensus 20 ~~k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 94 (272)
T 2nwq_A 20 MSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA-----KTRVLPLTLDVRDRAAMSAAVDNLPEE 94 (272)
T ss_dssp -CCEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT-----TSCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred cCcEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc-----CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999976554443333321 136888999999999999998753
Q ss_pred --CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHH----HcCCC-eEEEeccccccCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCK-NLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 --~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~-~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||.... .. ..+.+...+++|+.++.++++++. +.+.+ +||++||...+.
T Consensus 95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~----------- 163 (272)
T 2nwq_A 95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW----------- 163 (272)
T ss_dssp GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS-----------
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc-----------
Confidence 57999999997532 21 234456789999999888766654 45667 999999988752
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+......|+.+|.+.+.+++.++.+. .++++++++||.+.++.... .. .+......
T Consensus 164 ~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~--------------~~----~~~~~~~~---- 221 (272)
T 2nwq_A 164 PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV--------------RF----GGDQARYD---- 221 (272)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC--------------------------------------
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc--------------cc----ccchHHHH----
Confidence 33445789999999999999998775 37999999999988762100 00 00000000
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.......++..+|+|+++++++.. .....++.+.+.++
T Consensus 222 -----~~~~~~~~~~pedvA~~v~~l~s~--~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 222 -----KTYAGAHPIQPEDIAETIFWIMNQ--PAHLNINSLEIMPV 259 (272)
T ss_dssp ---------CCCCBCHHHHHHHHHHHHTS--CTTEEEEEEEEEET
T ss_pred -----HhhccCCCCCHHHHHHHHHHHhCC--CccCccceEEEeec
Confidence 000001247899999999999975 22345667776554
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=186.29 Aligned_cols=175 Identities=17% Similarity=0.159 Sum_probs=134.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+++||||+|+||++++++|+++|++|+++.|+. .......+.+.......+.++.++.+|++|.+++.++++..
T Consensus 6 k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~ 85 (324)
T 3u9l_A 6 KIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGED 85 (324)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999988863 22222233333222222457899999999999999888743
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... +.+++...+++|+.|+.++++++ ++.+.++||++||...++. +..
T Consensus 86 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~----------~~~ 155 (324)
T 3u9l_A 86 GRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG----------TPP 155 (324)
T ss_dssp SCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------CCS
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC----------CCC
Confidence 6999999999764433 23345668899999999999987 5566789999999887631 122
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.||.++|.+++.++.+. .++++++++||.+.++
T Consensus 156 ~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~ 196 (324)
T 3u9l_A 156 YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSG 196 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccC
Confidence 34679999999999999988774 4899999999999865
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=179.94 Aligned_cols=219 Identities=17% Similarity=0.143 Sum_probs=159.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+.+...+. .++.++.+|++|.+++.++++..
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA---------VGAHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---------TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---------cCCEEEEecCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999875443322211 13678899999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...++ ..
T Consensus 76 g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------~~ 143 (245)
T 1uls_A 76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG------------NL 143 (245)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC------------CT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcC------------CC
Confidence 5899999999754332 23345668899999999998877643 567999999988442 23
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.+|.+.+.+.+.++.+. .++++++++||.+..+... .+.+ ......... +
T Consensus 144 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~-----------~~~~~~~~~~~~~~----p------ 202 (245)
T 1uls_A 144 GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTA-----------KVPEKVREKAIAAT----P------ 202 (245)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTS-----------SSCHHHHHHHHHTC----T------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchh-----------hcCHHHHHHHHhhC----C------
Confidence 45689999999999998887764 3799999999999876210 1111 122222111 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.+ .+++.+|+|+++++++.... ....++.+++.+|..
T Consensus 203 ---~~----~~~~~~dvA~~v~~l~s~~~-~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 203 ---LG----RAGKPLEVAYAALFLLSDES-SFITGQVLFVDGGRT 239 (245)
T ss_dssp ---TC----SCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTT
T ss_pred ---CC----CCcCHHHHHHHHHHHhCchh-cCCcCCEEEECCCcc
Confidence 11 26789999999999987522 245789999987754
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=183.66 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=147.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+ ..++.++.+|++|.+++.++++..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 100 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-------GDDALCVPTDVTDPDSVRALFTATVEKF 100 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999765554433332 347889999999999999888643
Q ss_pred -CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHHHH----cC--CCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVMAA----HG--CKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~--~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||.... . ...+.+...+++|+.++.++++++.. .+ .++||++||...+.
T Consensus 101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------- 169 (272)
T 4dyv_A 101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS----------- 169 (272)
T ss_dssp SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS-----------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC-----------
Confidence 69999999997533 1 13344567899999999888886553 23 35999999987752
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+..+...|+.||.+.+.+++.++.+. .++++.+++||.+..+-. .....+.....
T Consensus 170 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~------------------~~~~~~~~~~~----- 226 (272)
T 4dyv_A 170 PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMA------------------QKMKAGVPQAD----- 226 (272)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC--------------------------------------
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhh------------------hhhcccchhhh-----
Confidence 34456789999999999999888774 379999999999887521 00000000000
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKL 253 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~ 253 (347)
.......+++++|+|+++++++..+
T Consensus 227 -----~~~~~~~~~~pedvA~~v~fL~s~~ 251 (272)
T 4dyv_A 227 -----LSIKVEPVMDVAHVASAVVYMASLP 251 (272)
T ss_dssp --------------CHHHHHHHHHHHHHSC
T ss_pred -----hcccccCCCCHHHHHHHHHHHhCCC
Confidence 0112234789999999999999973
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=184.14 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=166.9
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+| +||++++++|+++|++|++++|+....+...+..... ..+.++.+|++|.+++.++++..
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 37899999998 9999999999999999999999865433332222222 24678999999999999888643
Q ss_pred ---CCcEEEEccccccC--------CccccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV--------GESVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||.... ..+.+.+...+++|+.++.++++++...- .++||++||...+.
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~---------- 174 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK---------- 174 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----------
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc----------
Confidence 69999999997542 12334566789999999999999987642 34999999988752
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+......|+.||.+.+.+++.++.++ .++++.+++||.+..+... .. .............. +
T Consensus 175 -~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~-------~~-~~~~~~~~~~~~~~--p----- 238 (296)
T 3k31_A 175 -VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASS-------GI-SDFHYILTWNKYNS--P----- 238 (296)
T ss_dssp -CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCC-------SC-HHHHHHHHHHHHHS--T-----
T ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhh-------cc-cchHHHHHHHHhcC--C-----
Confidence 34456789999999999999888775 4799999999999886311 00 00111122222111 0
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
...+...+|+|+++++++.... ....|+++++.+|..++
T Consensus 239 ----------~~r~~~pedvA~~v~fL~s~~a-~~itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 239 ----------LRRNTTLDDVGGAALYLLSDLG-RGTTGETVHVDCGYHVV 277 (296)
T ss_dssp ----------TSSCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGC
T ss_pred ----------CCCCCCHHHHHHHHHHHcCCcc-CCccCCEEEECCCcccc
Confidence 1125678999999999997522 34678999998886543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=186.75 Aligned_cols=216 Identities=18% Similarity=0.161 Sum_probs=155.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+ .+..+.+|++|.+++.++++..
T Consensus 15 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (247)
T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK---------------GLFGVEVDVTDSDAVDRAFTAVEEHQ 79 (247)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT---------------TSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH---------------HhcCeeccCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999998765432 2224789999999998887642
Q ss_pred -CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||..... ...+.+...+++|+.++.++++++.. .+.++||++||...+. +..
T Consensus 80 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 148 (247)
T 1uzm_A 80 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW-----------GIG 148 (247)
T ss_dssp SSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC----------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc-----------CCC
Confidence 589999999975432 23345567899999999999887653 4567999999986642 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .++++++++||.+.++.. ..+........... .
T Consensus 149 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~-----------~~~~~~~~~~~~~~---~-------- 206 (247)
T 1uzm_A 149 NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMT-----------RALDERIQQGALQF---I-------- 206 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-----------HHSCHHHHHHHGGG---C--------
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccch-----------hhcCHHHHHHHHhc---C--------
Confidence 45689999999999999887764 379999999999876510 00001111111100 0
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+++.+|+|+++++++.... ....++++++.+|..+
T Consensus 207 -----p~~~~~~~~dvA~~~~~l~s~~~-~~~~G~~i~vdgG~~~ 245 (247)
T 1uzm_A 207 -----PAKRVGTPAEVAGVVSFLASEDA-SYISGAVIPVDGGMGM 245 (247)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTTC
T ss_pred -----CCCCCcCHHHHHHHHHHHcCccc-cCCcCCEEEECCCccc
Confidence 01237899999999999987522 2457899999887543
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-24 Score=182.29 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=156.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+++||||+|+||++++++|+++|++|++++|+..... ....++.+|++|.+++.++++.
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA--------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS--------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc--------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999866432 1346778999999998887762
Q ss_pred --CCCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 --TKFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 --~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+||||||...... ..+.+...+++|+.++.++++++... ..++||++||...+. +.
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 137 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG-----------PT 137 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------CC
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc-----------CC
Confidence 26999999999654221 23445678899999999999988764 235999999988762 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
.+...|+.+|.+.+.+++.++.+. .++++++++||.+.++ +..... ...
T Consensus 138 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~------------------~~~~~~-~~~-------- 190 (236)
T 1ooe_A 138 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP------------------MNRKWM-PNA-------- 190 (236)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH------------------HHHHHS-TTC--------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCc------------------chhhcC-CCc--------
Confidence 456789999999999999998875 2599999999998875 111111 110
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....++..+|+|+++..++.........|+.+++.++.
T Consensus 191 --------~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 191 --------DHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN 228 (236)
T ss_dssp --------CGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred --------cccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCC
Confidence 11135678999999986664322334568888887664
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=183.60 Aligned_cols=237 Identities=19% Similarity=0.141 Sum_probs=165.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|++|+++.++... .+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL----GSDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999987765433 33334444332 457889999999999999888643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... +.+++...+++|+.++.++++++...- -++||++||..... .+..+
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------~~~~~ 163 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD----------FSVPK 163 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT----------CCCTT
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc----------CCCCC
Confidence 6999999999765433 344566789999999999999888753 34999999976321 23445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCC-CCccHHHHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGI-PNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.||.+.+.+.+.++.++ .++++.+++||.+..+............ ...............
T Consensus 164 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 231 (270)
T 3is3_A 164 HSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHA------------ 231 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHH------------
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhc------------
Confidence 6789999999999999888874 4799999999999876210000000000 000011111111110
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+.+.+|+|+++.+++.... ....|+++++.+|.
T Consensus 232 ----~p~~r~~~p~dvA~~v~~L~s~~~-~~itG~~i~vdGG~ 269 (270)
T 3is3_A 232 ----SPLHRNGWPQDVANVVGFLVSKEG-EWVNGKVLTLDGGA 269 (270)
T ss_dssp ----STTCSCBCHHHHHHHHHHHTSGGG-TTCCSCEEEESTTC
T ss_pred ----CCCCCCCCHHHHHHHHHHHcCCcc-CCccCcEEEeCCCC
Confidence 111236789999999999986522 34678999998774
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=186.79 Aligned_cols=242 Identities=14% Similarity=0.126 Sum_probs=164.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch--------hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA--------SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
+|+++||||+|+||+++++.|+++|++|++++|.... .....+.........+.++.++.+|++|.+++.++
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 125 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAV 125 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 3789999999999999999999999999999876321 11111222111112356788999999999999988
Q ss_pred HccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cC-CCeEEEeccccccCCCCCC
Q 040584 74 FAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HG-CKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 74 ~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~-~~~iv~~SS~~~yg~~~~~ 139 (347)
++.. ++|+||||||...... +.+.+...+++|+.++.++++++.. .+ .++||++||...+.
T Consensus 126 ~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~----- 200 (317)
T 3oec_A 126 VDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR----- 200 (317)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC-----
Confidence 8643 6999999999765432 3345567889999999999887643 33 45899999988762
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCC---CCCCCCCCccHHHHHHHHcCC
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKG---EDPRGIPNNLMPFVTQVAVGR 214 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 214 (347)
+......|+.||.+.+.+++.++.++ .++++.+++||.+.++...... .....................
T Consensus 201 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (317)
T 3oec_A 201 ------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQL 274 (317)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTT
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhhh
Confidence 33455789999999999999988875 3799999999999875200000 000000000000001110000
Q ss_pred CCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 215 RPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 215 ~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......+++++|+|+++.+++... .....|+++++.+|..
T Consensus 275 ---------------~~~p~~~~~pedvA~av~fL~s~~-a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 275 ---------------TLLPIPWVEPEDVSNAVAWLASDE-ARYIHGAAIPVDGGQL 314 (317)
T ss_dssp ---------------CSSSSSSBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTGG
T ss_pred ---------------ccCCCCCCCHHHHHHHHHHHcCCc-ccCCCCCEEEECcchh
Confidence 011145789999999999988652 2346789999988754
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-24 Score=186.23 Aligned_cols=206 Identities=17% Similarity=0.210 Sum_probs=151.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+|+++||||+|+||++++++|+++|++|++++|+....+ .. ...++.++.+|++|.+++.++++..
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-------~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLK-------AL---NLPNTLCAQVDVTDKYTFDTAITRAEKI 84 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHH-------TT---CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-------Hh---hcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999998744322 11 1347788999999999999887642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||...... ..+.+...+++|+.++.++++++ ++.+.++||++||...+. +.
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-----------~~ 153 (266)
T 3p19_A 85 YGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK-----------TF 153 (266)
T ss_dssp HCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------CC
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC-----------CC
Confidence 6999999999765433 23345567899999999977665 455677999999988762 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.||.+.+.+.+.++.++ .++++.+++||.+.++.... ... ...........
T Consensus 154 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-------~~~--~~~~~~~~~~~----------- 213 (266)
T 3p19_A 154 PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSH-------TTS--QQIKDGYDAWR----------- 213 (266)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGG-------CSC--HHHHHHHHHHH-----------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhc-------ccc--hhhhHHHHhhc-----------
Confidence 456789999999999999888774 37999999999998863110 000 00111111000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.....+++++|+|+++++++..
T Consensus 214 -----~~~~r~~~pedvA~av~~l~~~ 235 (266)
T 3p19_A 214 -----VDMGGVLAADDVARAVLFAYQQ 235 (266)
T ss_dssp -----HHTTCCBCHHHHHHHHHHHHHS
T ss_pred -----ccccCCCCHHHHHHHHHHHHcC
Confidence 0112367899999999999987
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=189.84 Aligned_cols=225 Identities=14% Similarity=0.013 Sum_probs=153.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--CC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--KF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~ 79 (347)
||+|+||||+|+||++++++|+++|++|++++|+...... . +.+|++|.+++.+++++. ++
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----------------~-~~~Dl~~~~~v~~~~~~~~~~i 63 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA----------------D-LSTAEGRKQAIADVLAKCSKGM 63 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------------C-TTSHHHHHHHHHHHHTTCTTCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc----------------c-cccCCCCHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999987654320 1 568999999999998754 57
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCC-----------
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEE----------- 144 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~----------- 144 (347)
|+||||||.... ...++..+++|+.++.++++++.. .+.++||++||...+......+..+.
T Consensus 64 d~lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T 1fjh_A 64 DGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKAR 140 (257)
T ss_dssp SEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHH
T ss_pred CEEEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhh
Confidence 999999997541 234678999999999999888763 45579999999988732111111000
Q ss_pred ------CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 145 ------FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 145 ------~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
.+..+...|+.||.+.+.+++.++.+. .++++++++||.+.++..... ... .........
T Consensus 141 ~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~------~~~---~~~~~~~~~--- 208 (257)
T 1fjh_A 141 AIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG------LQD---PRYGESIAK--- 208 (257)
T ss_dssp HHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------------------
T ss_pred hhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh------ccc---hhHHHHHHh---
Confidence 122345689999999999998887763 489999999999987621000 000 000000000
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
+ ......+++++|+|+++++++.... ....|+.|++.+|...
T Consensus 209 -~-----------~~~~~~~~~~~dvA~~~~~l~~~~~-~~~tG~~~~vdgG~~~ 250 (257)
T 1fjh_A 209 -F-----------VPPMGRRAEPSEMASVIAFLMSPAA-SYVHGAQIVIDGGIDA 250 (257)
T ss_dssp -C-----------CCSTTSCCCTHHHHHHHHHHTSGGG-TTCCSCEEEESTTHHH
T ss_pred -c-----------ccccCCCCCHHHHHHHHHHHhCchh-cCCcCCEEEECCCccc
Confidence 0 0011236899999999999987622 2456889999877543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=188.41 Aligned_cols=232 Identities=14% Similarity=0.076 Sum_probs=162.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+. -.++.++.+|++|.+++.++++..
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE--------LPGAVFILCDVTQEDDVKTLVSETIRRF 80 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------CTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--------hcCCeEEEcCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999875544332222 124788999999999999887642
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||.... .. ..+.+...+++|+.++.++++++... +.++||++||...+. +..
T Consensus 81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~ 149 (270)
T 1yde_A 81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI-----------GQA 149 (270)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH-----------CCT
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccC-----------CCC
Confidence 69999999997532 11 22345678899999999998887531 246999999976541 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+++.++.+. .++++++++||.+++|..... ... .......+.......
T Consensus 150 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~---~~~-~~~~~~~~~~~~~~~------------ 213 (270)
T 1yde_A 150 QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEEL---AAL-MPDPRASIREGMLAQ------------ 213 (270)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHH---HTT-SSSHHHHHHHHHHTS------------
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhh---hhc-ccchHHHHHHHhhcC------------
Confidence 45689999999999999887663 389999999999998620000 000 000000111111100
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHH
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLE 275 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e 275 (347)
....+...+|+|+++.+++.. .....|+++++.+|..+...+
T Consensus 214 -----p~~r~~~p~dva~~v~~L~s~--~~~itG~~i~vdGG~~~~~~~ 255 (270)
T 1yde_A 214 -----PLGRMGQPAEVGAAAVFLASE--ANFCTGIELLVTGGAELGYGC 255 (270)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHHH--CTTCCSCEEEESTTTTSCC--
T ss_pred -----CCCCCcCHHHHHHHHHHHccc--CCCcCCCEEEECCCeecccCc
Confidence 011257899999999999876 234678999998887665443
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=183.05 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=163.0
Q ss_pred ceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++||||+ |+||++++++|+++|++|++++|+.. .....+.+.... ..+.++.+|++|.+++.++++..
T Consensus 7 k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 7 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQEL----NSPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHT----TCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhc----CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 789999999 99999999999999999999999875 333333333321 24678999999999998887642
Q ss_pred --CCcEEEEccccccC--------CccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV--------GESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 --~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||.... ..+.+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 150 (275)
T 2pd4_A 82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK----------- 150 (275)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC-----------
Confidence 68999999997542 1233455678999999999999998765 125999999987652
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+..+...|+.||.+.+.+++.++.+. .++++++++||.+.++... .. .........+.... ++
T Consensus 151 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-------~~-~~~~~~~~~~~~~~--p~----- 215 (275)
T 2pd4_A 151 YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASS-------GI-ADFRMILKWNEINA--PL----- 215 (275)
T ss_dssp BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGG-------GS-TTHHHHHHHHHHHS--TT-----
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhh-------hc-cccHHHHHHHHhcC--Cc-----
Confidence 23445689999999999999887774 3799999999999886311 00 00111222222111 00
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
..+.+.+|+|+++++++.... ....++.+++.++..
T Consensus 216 ----------~~~~~p~dva~~~~~l~s~~~-~~~tG~~~~vdgg~~ 251 (275)
T 2pd4_A 216 ----------RKNVSLEEVGNAGMYLLSSLS-SGVSGEVHFVDAGYH 251 (275)
T ss_dssp ----------SSCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGG
T ss_pred ----------CCCCCHHHHHHHHHHHhCccc-cCCCCCEEEECCCcc
Confidence 125679999999999986522 245778999977753
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=180.72 Aligned_cols=224 Identities=17% Similarity=0.114 Sum_probs=160.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC-CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN-LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
|+++||||+|+||++++++|+++|++|++..+ .....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 28 k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 28 KVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA----GGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999998754 433444444444332 457889999999999999887643
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+||||||....... .+.++..+++|+.++.++++++... ..++||++||...+. +....
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~ 172 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL-----------LHPSY 172 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH-----------CCTTC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc-----------CCCCc
Confidence 69999999997654332 2334567889999999999887754 234899999987752 33445
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.||.+.+.+++.++.++ .++++.++.||.+..+.... ..... ........
T Consensus 173 ~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~------~~~~~---~~~~~~~~--------------- 228 (267)
T 3u5t_A 173 GIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLE------GKSDE---VRDRFAKL--------------- 228 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC--------------------CHHHHHTS---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccc------cCCHH---HHHHHHhc---------------
Confidence 689999999999999998886 37999999999988752100 00000 11111111
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.....+...+|+|+++.+++... .....|+++++.+|
T Consensus 229 --~p~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG 265 (267)
T 3u5t_A 229 --APLERLGTPQDIAGAVAFLAGPD-GAWVNGQVLRANGG 265 (267)
T ss_dssp --STTCSCBCHHHHHHHHHHHHSTT-TTTCCSEEEEESSS
T ss_pred --CCCCCCcCHHHHHHHHHHHhCcc-ccCccCCEEEeCCC
Confidence 11123678999999999988752 23467899999776
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-23 Score=181.97 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=164.5
Q ss_pred CceEEEEcCCCc--ccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGY--IGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~--iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+|+ ||++++++|+++|++|++++|+....+. .+.+.... .++.++.+|++|.+++.++++..
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKR-VEPLAEEL----GAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHH-HHHHHHHH----TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHHHhc----CCceEEECCCCCHHHHHHHHHHHHH
Confidence 378999999988 9999999999999999999987432222 22222221 36788999999999999888642
Q ss_pred ---CCcEEEEccccccC--------CccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV--------GESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~--------~~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||.... ....+.+...+++|+.++.++++++... ..++||++||...+.
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~---------- 175 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK---------- 175 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS----------
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc----------
Confidence 69999999997541 1233455678999999999999988764 235999999988763
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+......|+.||.+.+.+++.++.++ .++++.+++||.+..+..... ..............
T Consensus 176 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--------~~~~~~~~~~~~~~-------- 238 (293)
T 3grk_A 176 -VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGI--------GDFRYILKWNEYNA-------- 238 (293)
T ss_dssp -BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--------------CCHHHHHHHHHHHS--------
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcc--------cchHHHHHHHHhcC--------
Confidence 34456789999999999999888774 379999999999987631100 00111222222111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
....+...+|+|+++++++.... ....|+++++.+|..++
T Consensus 239 ---------p~~r~~~pedvA~~v~~L~s~~~-~~itG~~i~vdGG~~~~ 278 (293)
T 3grk_A 239 ---------PLRRTVTIDEVGDVGLYFLSDLS-RSVTGEVHHADSGYHVI 278 (293)
T ss_dssp ---------TTSSCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGGB
T ss_pred ---------CCCCCCCHHHHHHHHHHHcCccc-cCCcceEEEECCCcccC
Confidence 01125679999999999987522 34678999998886543
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=181.06 Aligned_cols=212 Identities=14% Similarity=0.067 Sum_probs=151.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+|+||||+|+||++++++|+++| ++|++++|+....+.. ..+ ...++.++.+|++|.+++.++++..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l----~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL----KSI---KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH----HTC---CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH----Hhc---cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 9999999987655432 221 2457889999999999998888632
Q ss_pred -----CCcEEEEcccccc-CCc----cccCcchhhhhhhhHHHHHHHHHHHc----------C-----CCeEEEeccccc
Q 040584 78 -----KFDAVIHFAGLKA-VGE----SVQKPLPYFDNNLTGTITLLEVMAAH----------G-----CKNLVFSSSATA 132 (347)
Q Consensus 78 -----~~d~vih~a~~~~-~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----------~-----~~~iv~~SS~~~ 132 (347)
++|+||||||... ... ..+.+...+++|+.++.++++++... + .++||++||...
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 155 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence 5999999999764 221 23345668899999999998876542 4 679999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHH
Q 040584 133 YGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQV 210 (347)
Q Consensus 133 yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 210 (347)
+..... +..+..+...|+.+|.+++.+++.++.++ .++++++++||.+.++. ..
T Consensus 156 ~~~~~~----~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~------------------~~-- 211 (250)
T 1yo6_A 156 SITDNT----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNL------------------GG-- 211 (250)
T ss_dssp CSTTCC----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------------
T ss_pred ccCCcc----cccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCC------------------CC--
Confidence 632211 11222456789999999999999888775 37999999999887651 00
Q ss_pred HcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC
Q 040584 211 AVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGT 267 (347)
Q Consensus 211 ~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~ 267 (347)
. ..+++.+|+|++++.++.... ....++.+.+.+
T Consensus 212 ---~-------------------~~~~~~~~~a~~~~~~~~~~~-~~~~G~~~~~~g 245 (250)
T 1yo6_A 212 ---K-------------------NAALTVEQSTAELISSFNKLD-NSHNGRFFMRNL 245 (250)
T ss_dssp -----------------------------HHHHHHHHHHHTTCC-GGGTTCEEETTE
T ss_pred ---C-------------------CCCCCHHHHHHHHHHHHhccc-ccCCCeEEEECC
Confidence 0 024678999999999998622 123556666543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=182.60 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=151.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+..... ...++.++.+|++|.+++.++++..
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK-HVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT-TSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc-ccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999987766665555544321 1257889999999999998887642
Q ss_pred -CCcEEEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +..+
T Consensus 86 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 154 (250)
T 3nyw_A 86 GAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY-----------GFAD 154 (250)
T ss_dssp CCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------CC
T ss_pred CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC-----------CCCC
Confidence 6999999999754322 234456789999999999988763 44567999999987652 2334
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.||.+.+.+.+.++.++ .++++.+++||.+..+ +.... .. ..
T Consensus 155 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~------------------~~~~~--~~--~~--------- 203 (250)
T 3nyw_A 155 GGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD------------------MAKKA--GT--PF--------- 203 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH------------------HHHHT--TC--CS---------
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc------------------hhhhc--CC--Cc---------
Confidence 6789999999999999888774 3799999999987754 12211 11 01
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
....+++.+|+|+++.+++..
T Consensus 204 ----~~~~~~~p~dva~~v~~l~s~ 224 (250)
T 3nyw_A 204 ----KDEEMIQPDDLLNTIRCLLNL 224 (250)
T ss_dssp ----CGGGSBCHHHHHHHHHHHHTS
T ss_pred ----ccccCCCHHHHHHHHHHHHcC
Confidence 112368899999999999986
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=182.37 Aligned_cols=224 Identities=20% Similarity=0.174 Sum_probs=163.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+. + ..++.++.+|++|.+++.+++++.
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---L----EAEAIAVVADVSDPKAVEAVFAEALEEF 78 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---C----CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h----cCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999999999875543332221 1 246788999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|+||||||...... ..+.++..+++|+.++.++++++...- .++||++||...++ ....
T Consensus 79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~~~~ 146 (263)
T 2a4k_A 79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG------------AFGL 146 (263)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC------------HHHH
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC------------CCCc
Confidence 5899999999764332 223445688999999999999887642 35999999988762 1234
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.||.+.+.+.+.++.+. .++++++++||.+.++... .. ............ +
T Consensus 147 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~-------~~---~~~~~~~~~~~~--p----------- 203 (263)
T 2a4k_A 147 AHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA-------GL---PPWAWEQEVGAS--P----------- 203 (263)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT-------TS---CHHHHHHHHHTS--T-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhh-------hc---CHHHHHHHHhcC--C-----------
Confidence 679999999999998887764 3799999999999886311 00 011122222211 0
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
...+.+.+|+|+++++++.... ....++.+++.+|..+.
T Consensus 204 ----~~~~~~p~dvA~~v~~l~s~~~-~~~tG~~i~vdgG~~~~ 242 (263)
T 2a4k_A 204 ----LGRAGRPEEVAQAALFLLSEES-AYITGQALYVDGGRSIV 242 (263)
T ss_dssp ----TCSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTTTTC
T ss_pred ----CCCCcCHHHHHHHHHHHhCccc-cCCcCCEEEECCCcccc
Confidence 1136789999999999987522 24578999998876543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-24 Score=184.85 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=159.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|+++.|.....+...+....+. ..+.++.++.+|++|.+++.++++..
T Consensus 12 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 90 (262)
T 3ksu_A 12 KVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE-DQGAKVALYQSDLSNEEEVAKLFDFAEKEFG 90 (262)
T ss_dssp CEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHH-TTTCEEEEEECCCCSHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHH-hcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999999876544333222222221 12457889999999999999888642
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
++|+||||||...... +.+.+...+++|+.++.++++++... +.++||++||...+. +.....
T Consensus 91 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~-----------~~~~~~ 159 (262)
T 3ksu_A 91 KVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA-----------YTGFYS 159 (262)
T ss_dssp SEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH-----------HHCCCC
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc-----------CCCCCc
Confidence 6999999999765433 23345668889999999999998764 345899999987763 223456
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.||.+.+.+.+.++.++ .++++.++.||.+..+. ..... .......+. .
T Consensus 160 ~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~------------------~~~~~--~~~~~~~~~------~ 213 (262)
T 3ksu_A 160 TYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSF------------------FYGQE--TKESTAFHK------S 213 (262)
T ss_dssp C-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHH------------------HHTCC------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcc------------------ccccC--chHHHHHHH------h
Confidence 89999999999999998885 47999999999876541 00000 000000000 1
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccH
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSV 273 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~ 273 (347)
......+...+|+|+++++++.. .....|+.+++.+|.....
T Consensus 214 ~~~~~r~~~pedvA~~v~~L~s~--~~~itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 214 QAMGNQLTKIEDIAPIIKFLTTD--GWWINGQTIFANGGYTTRE 255 (262)
T ss_dssp --CCCCSCCGGGTHHHHHHHHTT--TTTCCSCEEEESTTCCCC-
T ss_pred cCcccCCCCHHHHHHHHHHHcCC--CCCccCCEEEECCCccCCC
Confidence 11223467899999999999875 2356789999987764443
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=180.82 Aligned_cols=223 Identities=18% Similarity=0.160 Sum_probs=161.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|++ .|+.|++++|..... ...+.++.+|++|.+++.++++..
T Consensus 4 ~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~--------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 69 (244)
T 4e4y_A 4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS--------------AENLKFIKADLTKQQDITNVLDIIKNV 69 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC--------------CTTEEEEECCTTCHHHHHHHHHHTTTC
T ss_pred CCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc--------------cccceEEecCcCCHHHHHHHHHHHHhC
Confidence 57899999999999999999999 789999998876522 236788999999999999888533
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
++|+||||||...... +.+.+...+++|+.++.++++++...- -++||++||...+. +.....
T Consensus 70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~~~~~ 138 (244)
T 4e4y_A 70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI-----------AKPNSF 138 (244)
T ss_dssp CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC-----------CCTTBH
T ss_pred CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc-----------CCCCCc
Confidence 6999999999754322 334556789999999999999887642 24899999988762 334556
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH--cCCC--CceEEecccC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA--VGRR--PALTVFGTDY 225 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~g~~~ 225 (347)
.|+.||.+.+.+.+.++.+. .++++.+++||.+.+|. ......... .+.. .......
T Consensus 139 ~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~--------------~~~~~~~~~~~~~~~~~~~~~~~~--- 201 (244)
T 4e4y_A 139 AYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDL--------------YRNLIQKYANNVGISFDEAQKQEE--- 201 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHH--------------HHHHHHHHHHHHTCCHHHHHHHHH---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchh--------------hHHHHHhhhhhcCCCHHHHHHHHh---
Confidence 89999999999999888764 37999999999998751 111111100 0000 0000000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.......+.+++|+|+++++++.... ....|+++++.+|..
T Consensus 202 ---~~~p~~r~~~p~dvA~~v~~l~s~~~-~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 202 ---KEFPLNRIAQPQEIAELVIFLLSDKS-KFMTGGLIPIDGGYT 242 (244)
T ss_dssp ---TTSTTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGG
T ss_pred ---hcCCCCCCcCHHHHHHHHHHHhcCcc-ccccCCeEeECCCcc
Confidence 11122347889999999999997522 346789999987753
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=183.68 Aligned_cols=223 Identities=16% Similarity=0.158 Sum_probs=164.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----K 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----~ 78 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++.. +
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 103 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-------GNRAEFVSTNVTSEDSVLAAIEAANQLGR 103 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-------CCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999866554444333 357889999999999999887632 5
Q ss_pred CcEEEEc-cccccCCc---------cccCcchhhhhhhhHHHHHHHHHHHc----------CCCeEEEeccccccCCCCC
Q 040584 79 FDAVIHF-AGLKAVGE---------SVQKPLPYFDNNLTGTITLLEVMAAH----------GCKNLVFSSSATAYGWPKV 138 (347)
Q Consensus 79 ~d~vih~-a~~~~~~~---------~~~~~~~~~~~nv~~~~~l~~~~~~~----------~~~~iv~~SS~~~yg~~~~ 138 (347)
+|+|||+ |+...... ..+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 104 id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 179 (281)
T 3ppi_A 104 LRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE---- 179 (281)
T ss_dssp EEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS----
T ss_pred CCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC----
Confidence 8999999 54432221 12235678899999999998876532 235899999998762
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
+......|+.||.+.+.+++.++.++ .++++.+++||.+..+... ..............
T Consensus 180 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~----------~~~~~~~~~~~~~~-- 240 (281)
T 3ppi_A 180 -------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIME----------SVGEEALAKFAANI-- 240 (281)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----------TTCHHHHHHHHHTC--
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhh----------cccHHHHHHHHhcC--
Confidence 34456789999999999998887775 3799999999998764100 00111222222211
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
+ ....+++.+|+|+++++++.. ....|+++++.+|..++
T Consensus 241 --~------------~~~~~~~pedvA~~v~~l~s~---~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 241 --P------------FPKRLGTPDEFADAAAFLLTN---GYINGEVMRLDGAQRFT 279 (281)
T ss_dssp --C------------SSSSCBCHHHHHHHHHHHHHC---SSCCSCEEEESTTCCCC
T ss_pred --C------------CCCCCCCHHHHHHHHHHHHcC---CCcCCcEEEECCCcccC
Confidence 0 002478999999999999986 45688999999887654
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=185.55 Aligned_cols=226 Identities=13% Similarity=0.038 Sum_probs=165.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH-------------
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA------------- 68 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~------------- 68 (347)
|+++||||+|+||++++++|+++|++|++++ |+........+.+... .+.++.++.+|++|.+
T Consensus 47 k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 123 (328)
T 2qhx_A 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR---RPNSAITVQADLSNVATAPVSGADGSAPV 123 (328)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---STTCEEEEECCCSSSCBCC-------CCB
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh---cCCeEEEEEeeCCCchhcccccccccccc
Confidence 7899999999999999999999999999998 8765555444444311 2357889999999998
Q ss_pred ----HHHHHHccC-----CCcEEEEccccccCCcc------------------ccCcchhhhhhhhHHHHHHHHHHH---
Q 040584 69 ----ALEVVFAGT-----KFDAVIHFAGLKAVGES------------------VQKPLPYFDNNLTGTITLLEVMAA--- 118 (347)
Q Consensus 69 ----~~~~~~~~~-----~~d~vih~a~~~~~~~~------------------~~~~~~~~~~nv~~~~~l~~~~~~--- 118 (347)
++.++++.. ++|+||||||....... .+.+...+++|+.++.++++++..
T Consensus 124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~ 203 (328)
T 2qhx_A 124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 203 (328)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877642 69999999997543221 233456789999999999887653
Q ss_pred -cC------CCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCC
Q 040584 119 -HG------CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHP 189 (347)
Q Consensus 119 -~~------~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~ 189 (347)
.+ .++||++||...+. +......|+.+|.+++.+++.++.++ .++.+++++||.+..+.
T Consensus 204 ~~~~~~~~~~g~IV~isS~~~~~-----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~- 271 (328)
T 2qhx_A 204 GTPAKHRGTNYSIINMVDAMTNQ-----------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD- 271 (328)
T ss_dssp HSCGGGSCSCEEEEEECCTTTTS-----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-
T ss_pred hcCCcCCCCCcEEEEECchhhcc-----------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-
Confidence 34 56999999987752 33456789999999999999888774 37999999999998762
Q ss_pred CCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 190 SGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..+........... + -+ ..+...+|+|+++++++... .....|+++++.+|.
T Consensus 272 -----------~~~~~~~~~~~~~~----p---------~~---~r~~~pedvA~~v~~l~s~~-~~~itG~~i~vdGG~ 323 (328)
T 2qhx_A 272 -----------DMPPAVWEGHRSKV----P---------LY---QRDSSAAEVSDVVIFLCSSK-AKYITGTCVKVDGGY 323 (328)
T ss_dssp -----------CSCHHHHHHHHTTC----T---------TT---TSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred -----------cccHHHHHHHHhhC----C---------CC---CCCCCHHHHHHHHHHHhCcc-ccCccCcEEEECCCc
Confidence 01112222222211 0 01 02568999999999998652 234678999998775
Q ss_pred cc
Q 040584 270 GT 271 (347)
Q Consensus 270 ~~ 271 (347)
.+
T Consensus 324 ~~ 325 (328)
T 2qhx_A 324 SL 325 (328)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=180.63 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=165.3
Q ss_pred ceEEEEcCCCc--ccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGGVGY--IGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGatG~--iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++||||+|+ ||++++++|+++|++|++++|+....+.. +.+.... ...++.++.+|++|.+++.++++..
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSV-HELAGTL--DRNDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHTS--SSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHH-HHHHHhc--CCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 68999999988 99999999999999999999875443332 2222211 1237889999999999999887643
Q ss_pred --CCcEEEEccccccC----C----ccccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAV----G----ESVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 --~~d~vih~a~~~~~----~----~~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+|||+||.... . ...+.+...+++|+.++.++++++...- -++||++||...+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 153 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL----------- 153 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc-----------
Confidence 68999999997541 1 1233455688999999999999987652 34899999988762
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+......|+.||.+.+.+++.++.+. .++++.+++||.+..+..... ..............
T Consensus 154 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--------~~~~~~~~~~~~~~--------- 216 (266)
T 3oig_A 154 VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGI--------SDFNSILKDIEERA--------- 216 (266)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC--------TTHHHHHHHHHHHS---------
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc--------cchHHHHHHHHhcC---------
Confidence 34456789999999999999888775 379999999999987531110 01112222222211
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+.+.+|+|+++++++.... ....|+++++.+|...
T Consensus 217 --------~~~~~~~p~dva~~v~~l~s~~~-~~~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 217 --------PLRRTTTPEEVGDTAAFLFSDMS-RGITGENLHVDSGFHI 255 (266)
T ss_dssp --------TTSSCCCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTGGG
T ss_pred --------CCCCCCCHHHHHHHHHHHcCCch-hcCcCCEEEECCCeEE
Confidence 01135789999999999997622 3467899999887543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=178.76 Aligned_cols=229 Identities=14% Similarity=0.022 Sum_probs=166.9
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
+|+++||||+ |+||++++++|+++|+.|+++.|+.... ....+.+... .+.++.++.+|++|.+++.++++..
T Consensus 20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (267)
T 3gdg_A 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKT---YGIKAKAYKCQVDSYESCEKLVKDVV 96 (267)
T ss_dssp TCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHH---HCCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHh---cCCceeEEecCCCCHHHHHHHHHHHH
Confidence 4789999999 9999999999999999999998876654 3444444332 2457889999999999999887643
Q ss_pred ----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 ----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 ----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||...+...
T Consensus 97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 167 (267)
T 3gdg_A 97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN--------- 167 (267)
T ss_dssp HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC---------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC---------
Confidence 6899999999765432 33445678999999999998876 44556799999998765211
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhcC-CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSDS-EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
+..+...|+.||.+.+.+++.++.++. .+.+.++.||.+..+- ...+.+.........
T Consensus 168 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~-----------~~~~~~~~~~~~~~~---------- 226 (267)
T 3gdg_A 168 FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGL-----------SDFVPKETQQLWHSM---------- 226 (267)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSC-----------GGGSCHHHHHHHHTT----------
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccch-----------hhhCCHHHHHHHHhc----------
Confidence 113457899999999999999988863 3788999999887642 111222222222211
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....+.+.+|+|+++.+++.. ......|+++++.+|..
T Consensus 227 ------~~~~r~~~~~dva~~~~~l~s~-~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 227 ------IPMGRDGLAKELKGAYVYFASD-ASTYTTGADLLIDGGYT 265 (267)
T ss_dssp ------STTSSCEETHHHHHHHHHHHST-TCTTCCSCEEEESTTGG
T ss_pred ------CCCCCCcCHHHHHhHhheeecC-ccccccCCEEEECCcee
Confidence 1122467899999999998875 22346789999987754
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=175.96 Aligned_cols=230 Identities=16% Similarity=0.084 Sum_probs=168.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|+.|++++|+.+..+...+++... +.++.++.+|++|++++++++++.
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999999877777666666554 457889999999999999887642
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||.... .+ +.++++..+++|+.++..+.+++. +.+-++||++||...+- +.
T Consensus 83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~-----------~~ 151 (254)
T 4fn4_A 83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR-----------GG 151 (254)
T ss_dssp SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------SS
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC-----------CC
Confidence 79999999996432 22 345667799999999998877644 44567999999987641 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
....+|+.||.+...+.+.++.++ .++++.++-||.+-.|-...... . -........... .++
T Consensus 152 ~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~-----~--~~~~~~~~~~~~-~~~------- 216 (254)
T 4fn4_A 152 FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSK-----P--SELGMRTLTKLM-SLS------- 216 (254)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSS-----C--CHHHHHHHHHHH-TTC-------
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccC-----C--cHHHHHHHHhcC-CCC-------
Confidence 445689999999999999888875 47999999999887652111100 0 011111111110 011
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ -+...+|+|+++++++... .....|+++.+.+|.+
T Consensus 217 ----~----R~g~pediA~~v~fLaSd~-a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 217 ----S----RLAEPEDIANVIVFLASDE-ASFVNGDAVVVDGGLT 252 (254)
T ss_dssp ----C----CCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGG
T ss_pred ----C----CCcCHHHHHHHHHHHhCch-hcCCcCCEEEeCCCcc
Confidence 1 1456899999999998752 2356889999987743
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=180.94 Aligned_cols=171 Identities=22% Similarity=0.186 Sum_probs=133.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999998765554444444322 346888999999999988877632
Q ss_pred -CCcEEEEccccc-cCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLK-AVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~-~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||.. .... ..+.+...+++|+.++.++++++.. .+.++||++||...+. +.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 151 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK-----------GP 151 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS-----------CC
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc-----------CC
Confidence 699999999975 2222 2334567889999999999887654 3567999999987763 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.....|+.+|.+.+.+.+.++.+. .++++++++||.+..+
T Consensus 152 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 152 PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 345689999999999998887664 3799999999987754
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=182.07 Aligned_cols=227 Identities=14% Similarity=0.066 Sum_probs=165.4
Q ss_pred CceEEEEcCCCc--ccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGY--IGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~--iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+|+||||+|+ ||+++++.|+++|++|++++|+. .....+.+... ..++.++.+|++|.+++.++++..
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAE----FNPAAVLPCDVISDQEIKDLFVELGK 99 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGG----GCCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHh----cCCceEEEeecCCHHHHHHHHHHHHH
Confidence 379999999977 99999999999999999999886 22233333322 235789999999999999887643
Q ss_pred ---CCcEEEEccccccCC---------ccccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVG---------ESVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCT 142 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~---------~~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~ 142 (347)
++|+||||||..... ...+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~-------- 171 (280)
T 3nrc_A 100 VWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK-------- 171 (280)
T ss_dssp HCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS--------
T ss_pred HcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc--------
Confidence 689999999975431 233445668999999999999987753 346999999988762
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEE
Q 040584 143 EEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTV 220 (347)
Q Consensus 143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (347)
+......|+.||.+.+.+++.++.+. .++++.+++||.+..+..... ..............
T Consensus 172 ---~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--------~~~~~~~~~~~~~~------ 234 (280)
T 3nrc_A 172 ---AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGI--------SNFKKMLDYNAMVS------ 234 (280)
T ss_dssp ---CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGC--------TTHHHHHHHHHHHS------
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcC--------cchHHHHHHHHhcC------
Confidence 34456789999999999999887764 379999999999987631100 01112222222211
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
....+...+|+|+++++++.... ....|+++++.+|..+
T Consensus 235 -----------p~~~~~~pedvA~~v~~l~s~~~-~~~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 235 -----------PLKKNVDIMEVGNTVAFLCSDMA-TGITGEVVHVDAGYHC 273 (280)
T ss_dssp -----------TTCSCCCHHHHHHHHHHTTSGGG-TTCCSCEEEESTTGGG
T ss_pred -----------CCCCCCCHHHHHHHHHHHhCccc-CCcCCcEEEECCCccc
Confidence 01125789999999999887522 3467899999887643
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=182.52 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=151.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+|+||||+|+||++++++|+++|++|++++|+... +..+ ..+.++ +|+ .+++.++++.. ++|
T Consensus 19 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~-------~~~~-----~~~~~~-~D~--~~~~~~~~~~~~~iD 83 (249)
T 1o5i_A 19 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL-------LKRS-----GHRYVV-CDL--RKDLDLLFEKVKEVD 83 (249)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH-------HHHT-----CSEEEE-CCT--TTCHHHHHHHSCCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH-------HHhh-----CCeEEE-eeH--HHHHHHHHHHhcCCC
Confidence 5799999999999999999999999999999987421 1111 246667 999 33455555433 699
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHH----HHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLE----VMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~----~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
+||||||...... ..+.+...+++|+.++.++.+ .+++.+.++||++||...+. +..+...
T Consensus 84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~ 152 (249)
T 1o5i_A 84 ILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS-----------PIENLYT 152 (249)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCTTBHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC-----------CCCCCch
Confidence 9999999754332 233456788999999876655 45555678999999998874 3344578
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHH-HHHcCCCCceEEecccCCCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVT-QVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~ 228 (347)
|+.+|.+.+.+.+.++.+. .++++++++||.++++.. ..+. .... ......
T Consensus 153 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-----------~~~~~~~~~~~~~~~~-------------- 207 (249)
T 1o5i_A 153 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERV-----------KELLSEEKKKQVESQI-------------- 207 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTH-----------HHHSCHHHHHHHHTTS--------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcc-----------cccchhhHHHHHHhcC--------------
Confidence 9999999999998887763 389999999999998621 0000 1111 111110
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+++++|+|+++++++.... ....+++|++.+|..
T Consensus 208 ---p~~~~~~~~dvA~~i~~l~s~~~-~~~tG~~~~vdgG~~ 245 (249)
T 1o5i_A 208 ---PMRRMAKPEEIASVVAFLCSEKA-SYLTGQTIVVDGGLS 245 (249)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTCC
T ss_pred ---CCCCCcCHHHHHHHHHHHcCccc-cCCCCCEEEECCCcc
Confidence 11247899999999999887522 235689999987753
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=179.00 Aligned_cols=211 Identities=18% Similarity=0.156 Sum_probs=151.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--CC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--KF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--~~ 79 (347)
||+|+||||+|+||++++++|+++|++|++++|+....+...+.+ ..++.++.+|++|.+++.+++++. ..
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 73 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-------SNNVGYRARDLASHQEVEQLFEQLDSIP 73 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-------SSCCCEEECCTTCHHHHHHHHHSCSSCC
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------hhccCeEeecCCCHHHHHHHHHHHhhcC
Confidence 478999999999999999999999999999999765544332221 357789999999999999999853 24
Q ss_pred cEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC---CCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 80 DAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG---CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 80 d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~---~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
|+||||||...... ..+.+...+++|+.++.++++++...- ..+||++||...+. +......
T Consensus 74 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~~~~ 142 (230)
T 3guy_A 74 STVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ-----------PKAQEST 142 (230)
T ss_dssp SEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS-----------CCTTCHH
T ss_pred CEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC-----------CCCCCch
Confidence 99999999765433 233456688999999999999876541 23999999988762 3445678
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
|+.||.+.+.+++.++.++ .++++.+++||.+..+. ..... . .
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~------------------~~~~~--~---------------~ 187 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEF------------------WETSG--K---------------S 187 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChH------------------HHhcC--C---------------C
Confidence 9999999999999998886 37999999999887641 11100 0 0
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
.....+++.+|+|+++.+++.+.......++.+..
T Consensus 188 ~~~~~~~~~~dvA~~i~~l~~~~~~~~itg~~~~~ 222 (230)
T 3guy_A 188 LDTSSFMSAEDAALMIHGALANIGNGYVSDITVNR 222 (230)
T ss_dssp -----CCCHHHHHHHHHHHCCEETTEEEEEEEEEC
T ss_pred CCcccCCCHHHHHHHHHHHHhCcCCCCccceeecC
Confidence 11234788999999999988753322233444444
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-24 Score=180.28 Aligned_cols=207 Identities=16% Similarity=0.109 Sum_probs=156.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
|+++||||+|+||++++++|+++|++|++++|+.. +|++|.+++.++++++ ++|+
T Consensus 7 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~------------------------~D~~~~~~v~~~~~~~g~id~ 62 (223)
T 3uce_A 7 TVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG------------------------LDISDEKSVYHYFETIGAFDH 62 (223)
T ss_dssp EEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT------------------------CCTTCHHHHHHHHHHHCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc------------------------cCCCCHHHHHHHHHHhCCCCE
Confidence 68999999999999999999999999999987522 7999999999988753 6999
Q ss_pred EEEcccccc-CC----ccccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCCCCCCCCchh
Q 040584 82 VIHFAGLKA-VG----ESVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYG 154 (347)
Q Consensus 82 vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~ 154 (347)
||||||... .. ...+.+...+++|+.++.++++++...- -++||++||...+. +..+...|+
T Consensus 63 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------~~~~~~~Y~ 131 (223)
T 3uce_A 63 LIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK-----------VVANTYVKA 131 (223)
T ss_dssp EEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS-----------CCTTCHHHH
T ss_pred EEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc-----------CCCCchHHH
Confidence 999999752 21 2334456688999999999999987642 24899999988763 344567899
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 155 RSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
.+|.+.+.+.+.++.++..+++.+++||.+..|... ........ +........ ..
T Consensus 132 asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~-------~~~~~~~~~~~~~~~~~~-----------------~~ 187 (223)
T 3uce_A 132 AINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYK-------GMNADDRDAMYQRTQSHL-----------------PV 187 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGT-------TSCHHHHHHHHHHHHHHS-----------------TT
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhh-------hcchhhHHHHHHHHhhcC-----------------CC
Confidence 999999999999998875599999999999876211 00000111 122222111 11
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
..+.+++|+|+++++++.. +...|+++++.+|..+
T Consensus 188 ~~~~~~~dvA~~~~~l~~~---~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 188 GKVGEASDIAMAYLFAIQN---SYMTGTVIDVDGGALL 222 (223)
T ss_dssp CSCBCHHHHHHHHHHHHHC---TTCCSCEEEESTTGGG
T ss_pred CCccCHHHHHHHHHHHccC---CCCCCcEEEecCCeec
Confidence 2367899999999999975 4567899999888654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=179.11 Aligned_cols=220 Identities=17% Similarity=0.209 Sum_probs=158.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH-HHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK-AALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~-- 77 (347)
+|+++||||+|+||++++++|+++|++ |++++|+... ...+.+..... +.++.++.+|++|. +++.++++..
T Consensus 5 ~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T 1sby_A 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINP--KVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCT--TSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCC--CceEEEEEEecCCChHHHHHHHHHHHH
Confidence 478999999999999999999999997 8899887643 22233333211 34678899999998 8887776532
Q ss_pred ---CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc----C---CCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH----G---CKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~---~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|+||||||.. ..+.+...+++|+.++.++++++... + .++||++||...+. +.
T Consensus 81 ~~g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 145 (254)
T 1sby_A 81 QLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-----------AI 145 (254)
T ss_dssp HHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-----------CC
T ss_pred hcCCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc-----------CC
Confidence 699999999974 23566789999999999999987643 1 35899999998863 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.||.+.+.+++.++.+. .++++++++||.+.++..... ..... ..+........
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~-~~~~~~~~~~~------------ 208 (254)
T 1sby_A 146 HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTF----NSWLD-VEPRVAELLLS------------ 208 (254)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSC----CCGGG-SCTTHHHHHTT------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcccccc----chhhh-hhHHHHHHHhc------------
Confidence 445689999999999999887763 389999999999987621000 00000 00001111110
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..+.+++|+|++++.++.. ...+++|++.+|.
T Consensus 209 --------~~~~~~~dvA~~i~~~~~~----~~~G~~~~v~gG~ 240 (254)
T 1sby_A 209 --------HPTQTSEQCGQNFVKAIEA----NKNGAIWKLDLGT 240 (254)
T ss_dssp --------SCCEEHHHHHHHHHHHHHH----CCTTCEEEEETTE
T ss_pred --------CCCCCHHHHHHHHHHHHHc----CCCCCEEEEeCCc
Confidence 1234899999999998875 3567899998773
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=181.76 Aligned_cols=225 Identities=14% Similarity=0.074 Sum_probs=163.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC-chhHHHHHHHHHhhccCCCCeEEEecCCCC----HHHHHHHHcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD-NASEIAVAKVKELAGYQGNNMTFHKLDLRD----KAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~~~ 76 (347)
+|+++||||+|+||++++++|+++|++|++++|+. .......+.+... .+.++.++.+|++| .+++.++++.
T Consensus 23 ~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~~~~~~~~~v~~~~~~ 99 (288)
T 2x9g_A 23 APAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE---RSNTAVVCQADLTNSNVLPASCEEIINS 99 (288)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHH---STTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhh---cCCceEEEEeecCCccCCHHHHHHHHHH
Confidence 47899999999999999999999999999999987 5554444444311 23578899999999 8888887763
Q ss_pred C-----CCcEEEEccccccCCcc--------------ccCcchhhhhhhhHHHHHHHHHHHc----C------CCeEEEe
Q 040584 77 T-----KFDAVIHFAGLKAVGES--------------VQKPLPYFDNNLTGTITLLEVMAAH----G------CKNLVFS 127 (347)
Q Consensus 77 ~-----~~d~vih~a~~~~~~~~--------------~~~~~~~~~~nv~~~~~l~~~~~~~----~------~~~iv~~ 127 (347)
. ++|+||||||....... .+.+...+++|+.++..+++++... + .++||++
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i 179 (288)
T 2x9g_A 100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL 179 (288)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence 2 69999999997543221 2234568899999999998887643 2 4599999
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH
Q 040584 128 SSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP 205 (347)
Q Consensus 128 SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~ 205 (347)
||...+. +......|+.||.+.+.+.+.++.++ .++++++++||.+++|. . ....
T Consensus 180 sS~~~~~-----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-----------~~~~ 236 (288)
T 2x9g_A 180 CDAMVDQ-----------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-----------MGEE 236 (288)
T ss_dssp CCTTTTS-----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-----------SCHH
T ss_pred ecccccC-----------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-----------cChH
Confidence 9988763 33456789999999999998887764 37999999999999862 0 0111
Q ss_pred HHHHHHcCCCCceEEecccCCCCCCceeeee-eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 206 FVTQVAVGRRPALTVFGTDYSTKDGTVVRDY-IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 206 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......... + -+ .+ ...+|+|+++++++... .....|+.+++.+|..
T Consensus 237 ~~~~~~~~~--p-----------~~----r~~~~pedvA~~v~~l~s~~-~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 237 EKDKWRRKV--P-----------LG----RREASAEQIADAVIFLVSGS-AQYITGSIIKVDGGLS 284 (288)
T ss_dssp HHHHHHHTC--T-----------TT----SSCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGG
T ss_pred HHHHHHhhC--C-----------CC----CCCCCHHHHHHHHHHHhCcc-ccCccCCEEEECcchh
Confidence 222222211 0 01 13 68999999999998752 2346788999987753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=185.96 Aligned_cols=172 Identities=18% Similarity=0.186 Sum_probs=133.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
++||||||+|+||++++++|+++|++|++++|+..+.+...+.+..... ...+.++.+|++|.+++.++++..
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS--GPEVMGVQLDVASREGFKMAADEVEARFG 86 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999987776665555544311 236888999999999999888642
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----------CCCeEEEeccccccCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----------GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----------~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+||||||...... +.+.+...+++|+.|+.++++++... +.++||++||...+.
T Consensus 87 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~--------- 157 (319)
T 3ioy_A 87 PVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL--------- 157 (319)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC---------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc---------
Confidence 6899999999754433 23445678999999999998876543 245899999988763
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
+......|+.||.+.+.+.+.++.++ .++++++++||.|.++
T Consensus 158 --~~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 201 (319)
T 3ioy_A 158 --AAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSY 201 (319)
T ss_dssp --CCSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC--
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccC
Confidence 23345689999998777777665543 3799999999999876
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=180.90 Aligned_cols=208 Identities=17% Similarity=0.179 Sum_probs=153.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||+|+||++++++|+++|++|++++|+....+...+.+.... ...+.++.+|++|.+++.++++..
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 110 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT---GNIVRAVVCDVGDPDQVAALFAAVRAEFA 110 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999999999999999998776665555554432 234588999999999999887643
Q ss_pred CCcEEEEccccccC-C----ccccCcchhhhhhhhHHHHHHHHHHH----cC--CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAV-G----ESVQKPLPYFDNNLTGTITLLEVMAA----HG--CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 ~~d~vih~a~~~~~-~----~~~~~~~~~~~~nv~~~~~l~~~~~~----~~--~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|+||||||.... . ...+.++..+++|+.++.++++++.. .+ .++||++||...+ .+
T Consensus 111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~-----------~~ 179 (281)
T 4dry_A 111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ-----------TP 179 (281)
T ss_dssp CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT-----------CC
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC-----------CC
Confidence 68999999997533 1 13345566899999999888776553 32 4599999998775 23
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
..+...|+.||.+.+.+++.++.+. .++++.+++||.+..+- ............
T Consensus 180 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~------------------~~~~~~~~~~~~------ 235 (281)
T 4dry_A 180 RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDM------------------TARMSTGVLQAN------ 235 (281)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------------------------CEEECTT------
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChh------------------hhhhcchhhhhh------
Confidence 4556789999999999999888764 37999999999887651 111111000000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.......++..+|+|+++++++..
T Consensus 236 ----~~~~~~~~~~pedvA~~v~fL~s~ 259 (281)
T 4dry_A 236 ----GEVAAEPTIPIEHIAEAVVYMASL 259 (281)
T ss_dssp ----SCEEECCCBCHHHHHHHHHHHHHS
T ss_pred ----hcccccCCCCHHHHHHHHHHHhCC
Confidence 011223477899999999999987
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=184.97 Aligned_cols=199 Identities=15% Similarity=0.094 Sum_probs=151.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||+++++.|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc----CCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999999999999766555444444432 357889999999999998887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +..
T Consensus 107 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~ 175 (272)
T 1yb1_A 107 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV-----------SVP 175 (272)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC-----------CHH
T ss_pred CCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC-----------CCC
Confidence 6999999999754332 223455789999999888777654 45677999999988763 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc-----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD-----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+...|+.+|.+++.+++.++.+. .++++++++||.+.++.. .. . .
T Consensus 176 ~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~-----------~~-----------~--~------ 225 (272)
T 1yb1_A 176 FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFI-----------KN-----------P--S------ 225 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCST-----------TC-----------T--H------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc-----------cc-----------c--c------
Confidence 45679999999999999887764 389999999999987620 00 0 0
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.....+++.+|+|++++.++..
T Consensus 226 -------~~~~~~~~~~dva~~i~~~~~~ 247 (272)
T 1yb1_A 226 -------TSLGPTLEPEEVVNRLMHGILT 247 (272)
T ss_dssp -------HHHCCCCCHHHHHHHHHHHHHT
T ss_pred -------ccccCCCCHHHHHHHHHHHHHc
Confidence 0012367899999999999987
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=177.88 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=155.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+++||||+|+||++++++|+++|++|++++|+..... ....++.+|++|.+++.++++.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~~D~~~~~~v~~~~~~~~~~~ 72 (241)
T 1dhr_A 7 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA--------------SASVIVKMTDSFTEQADQVTAEVGKLL 72 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS--------------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc--------------CCcEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999865432 1346778999999998888763
Q ss_pred --CCCcEEEEccccccCCc-----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 --TKFDAVIHFAGLKAVGE-----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 --~~~d~vih~a~~~~~~~-----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+. +.
T Consensus 73 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~ 141 (241)
T 1dhr_A 73 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD-----------GT 141 (241)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------CC
T ss_pred CCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc-----------CC
Confidence 26999999999754221 23345678899999999999988764 225999999988763 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
.+...|+.+|.+.+.+++.++.+. .++++++++||.+-.+ +...... .
T Consensus 142 ~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~------------------~~~~~~~-~--------- 193 (241)
T 1dhr_A 142 PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP------------------MNRKSMP-E--------- 193 (241)
T ss_dssp TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH------------------HHHHHST-T---------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc------------------cccccCc-c---------
Confidence 455789999999999999998874 3699999999987653 1111111 1
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....++..+|+|+++.+++... .....|+.+++.+++
T Consensus 194 -------~~~~~~~~~~~vA~~v~~l~~~~-~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 194 -------ADFSSWTPLEFLVETFHDWITGN-KRPNSGSLIQVVTTD 231 (241)
T ss_dssp -------SCGGGSEEHHHHHHHHHHHHTTT-TCCCTTCEEEEEEET
T ss_pred -------hhhccCCCHHHHHHHHHHHhcCC-CcCccceEEEEeCCC
Confidence 01123567899999999988752 223567888887654
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=176.72 Aligned_cols=210 Identities=16% Similarity=0.084 Sum_probs=156.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC---CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG---YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
+|+|+||||+|+||++++++|+++| ++|++++|+....+.. +.+... ..++.++.+|++|.+++.++++..
T Consensus 21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~ 95 (267)
T 1sny_A 21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN----HSNIHILEIDLRNFDAYDKLVADIE 95 (267)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH----CTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc----CCceEEEEecCCChHHHHHHHHHHH
Confidence 5789999999999999999999999 9999999987765432 222221 347889999999999998888632
Q ss_pred ------CCcEEEEcccccc-CC----ccccCcchhhhhhhhHHHHHHHHHHHc----------C-----CCeEEEecccc
Q 040584 78 ------KFDAVIHFAGLKA-VG----ESVQKPLPYFDNNLTGTITLLEVMAAH----------G-----CKNLVFSSSAT 131 (347)
Q Consensus 78 ------~~d~vih~a~~~~-~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~----------~-----~~~iv~~SS~~ 131 (347)
++|+||||||... .. ...+.+...+++|+.++.++++++... + .++||++||..
T Consensus 96 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 175 (267)
T 1sny_A 96 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 175 (267)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccc
Confidence 4999999999754 21 123445668899999999998887543 2 46899999988
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHH
Q 040584 132 AYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQ 209 (347)
Q Consensus 132 ~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 209 (347)
.+.... +..+...|+.+|.+++.+++.++.+. .+++++++|||.+..+-.
T Consensus 176 ~~~~~~--------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-------------------- 227 (267)
T 1sny_A 176 GSIQGN--------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG-------------------- 227 (267)
T ss_dssp GCSTTC--------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT--------------------
T ss_pred ccccCC--------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCC--------------------
Confidence 764211 12355689999999999999887763 389999999998876410
Q ss_pred HHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC
Q 040584 210 VAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGT 267 (347)
Q Consensus 210 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~ 267 (347)
+.. .++..+|+|+.++.++.... ....+..|++.+
T Consensus 228 ---~~~-------------------~~~~~~~~a~~~~~~~~~~~-~~~~G~~~~~~g 262 (267)
T 1sny_A 228 ---GSS-------------------APLDVPTSTGQIVQTISKLG-EKQNGGFVNYDG 262 (267)
T ss_dssp ---CTT-------------------CSBCHHHHHHHHHHHHHHCC-GGGTTCEECTTS
T ss_pred ---CCC-------------------CCCCHHHHHHHHHHHHHhcC-cCCCCcEEccCC
Confidence 000 13568999999999998732 224556665543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=178.86 Aligned_cols=228 Identities=17% Similarity=0.103 Sum_probs=164.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||+|+||++++++|+++|+.|+++ .|+..........+... ..++.++.+|++|.+++.++++..
T Consensus 7 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (255)
T 3icc_A 7 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN----GGSAFSIGANLESLHGVEALYSSLDNE 82 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc----CCceEEEecCcCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999886 55544444444444332 457788999999999888777532
Q ss_pred --------CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCC
Q 040584 78 --------KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 78 --------~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
++|+||||||...... ..+.++..+++|+.++.++++++... +.++||++||...+.
T Consensus 83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~--------- 153 (255)
T 3icc_A 83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--------- 153 (255)
T ss_dssp HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS---------
T ss_pred hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc---------
Confidence 3999999999754433 22344567889999999999988764 345899999988763
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
+......|+.||.+.+.+++.++.+. .++++.+++||.+..+..... .. .+.........
T Consensus 154 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------~~--~~~~~~~~~~~------- 215 (255)
T 3icc_A 154 --SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAEL-------LS--DPMMKQYATTI------- 215 (255)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTT-------TT--SHHHHHHHHHT-------
T ss_pred --CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhh-------cc--cHHHHHhhhcc-------
Confidence 33445789999999999999888774 479999999999987631110 00 01111111111
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....+.+++|+|+++.+++... .....|+++++.+|..
T Consensus 216 ---------~~~~~~~~~~dva~~~~~l~s~~-~~~~tG~~i~vdgG~~ 254 (255)
T 3icc_A 216 ---------SAFNRLGEVEDIADTAAFLASPD-SRWVTGQLIDVSGGSC 254 (255)
T ss_dssp ---------STTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESSSTT
T ss_pred ---------CCcCCCCCHHHHHHHHHHHhCcc-cCCccCCEEEecCCee
Confidence 11123678999999999988652 2346789999987753
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-23 Score=177.47 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=158.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCC--CCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL--RDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~~~-- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+.... ..+..++.+|+ +|.+++.++++..
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG---QPQPLIIALNLENATAQQYRELAARVEH 90 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---SCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC---CCCceEEEeccccCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998776665555554432 24667777777 8998888877643
Q ss_pred ---CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 ---~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||.... .. ..+.+...+++|+.++.++++++. +.+.++||++||...+.
T Consensus 91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 159 (247)
T 3i1j_A 91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK----------- 159 (247)
T ss_dssp HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-----------
Confidence 69999999997432 11 234556789999999999998874 34456999999987652
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+......|+.+|.+.+.+++.++.+. .++++.++.||.+..+ +.......
T Consensus 160 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~------------------~~~~~~~~--------- 212 (247)
T 3i1j_A 160 GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG------------------MRAQAYPD--------- 212 (247)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH------------------HHHHHSTT---------
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc------------------cchhcccc---------
Confidence 34456789999999999999988875 4789999999876653 22222111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
.....+...+|+|+++++++.... ....|+.+++
T Consensus 213 --------~~~~~~~~p~dva~~~~~l~s~~~-~~itG~~i~~ 246 (247)
T 3i1j_A 213 --------ENPLNNPAPEDIMPVYLYLMGPDS-TGINGQALNA 246 (247)
T ss_dssp --------SCGGGSCCGGGGTHHHHHHHSGGG-TTCCSCEEEC
T ss_pred --------cCccCCCCHHHHHHHHHHHhCchh-ccccCeeecC
Confidence 111234678999999999987522 3456777765
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=181.65 Aligned_cols=232 Identities=14% Similarity=0.103 Sum_probs=161.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+. .+.++.++.+|++|.+++.++++..
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA-------HGGNAVGVVGDVRSLQDQKRAAERCLAAF 77 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------TBTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH-------cCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999875544332222 1357889999999999988887643
Q ss_pred -CCcEEEEccccccCCcc---------ccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES---------VQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~---------~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|+||||||....... .+.+...+++|+.++.++++++... +-+++|++||...+.
T Consensus 78 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 147 (281)
T 3zv4_A 78 GKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY---------- 147 (281)
T ss_dssp SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS----------
T ss_pred CCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc----------
Confidence 68999999997532111 1124567889999999998876542 135999999987752
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccH--HHHHHHHcCCCCceEEe
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM--PFVTQVAVGRRPALTVF 221 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 221 (347)
+......|+.||.+.+.+.+.++.++ +.+++.++.||.+..+-......... ...+. +.........
T Consensus 148 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------- 217 (281)
T 3zv4_A 148 -PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLS--EQSISSVPLADMLKSVL------- 217 (281)
T ss_dssp -SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC----------CCHHHHHHHTC-------
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccc--cccccchhHHHHHHhcC-------
Confidence 33455689999999999999998875 34999999999998763211100000 00000 0111111110
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+...+|+|+++++++.........|+++++.+|..
T Consensus 218 ----------p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 218 ----------PIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMG 256 (281)
T ss_dssp ----------TTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGG
T ss_pred ----------CCCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCc
Confidence 112367899999999999973233346889999987753
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=176.25 Aligned_cols=216 Identities=16% Similarity=0.103 Sum_probs=157.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-------hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-------SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+ .....+.+... +.++.++.+|++|.+++.+++
T Consensus 9 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 9 GKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA----GGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH----TSEEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHH
Confidence 3789999999999999999999999999999998763 23333444333 457889999999999999887
Q ss_pred ccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCC
Q 040584 75 AGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 75 ~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~ 141 (347)
+.. ++|+||||||...... ..+.+...+++|+.++.++++++... +.++||++||...+..
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------ 158 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP------ 158 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC------
Confidence 643 6999999999765433 23344567889999999999987654 4569999999876421
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
.......|+.||.+.+.+++.++.+. .++++.++.||.+... ++......... .
T Consensus 159 ----~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t-----------------~~~~~~~~~~~-~-- 214 (285)
T 3sc4_A 159 ----KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT-----------------AAVQNLLGGDE-A-- 214 (285)
T ss_dssp ----GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC-----------------HHHHHHHTSCC-C--
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc-----------------HHHHhhccccc-c--
Confidence 11344789999999999999988874 3799999999843321 12333332211 1
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
...+...+|+|+++++++.... ...++.+.+.
T Consensus 215 -------------~~r~~~pedvA~~~~~l~s~~~--~~tG~~i~~d 246 (285)
T 3sc4_A 215 -------------MARSRKPEVYADAAYVVLNKPS--SYTGNTLLCE 246 (285)
T ss_dssp -------------CTTCBCTHHHHHHHHHHHTSCT--TCCSCEEEHH
T ss_pred -------------ccCCCCHHHHHHHHHHHhCCcc--cccceEEEEc
Confidence 1135678999999999998622 3455666554
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-23 Score=175.37 Aligned_cols=197 Identities=17% Similarity=0.128 Sum_probs=147.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+ +.++.++.+|++|.+++.++++..
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-------GNAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999866554444333 125888999999999998887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... ..+.+...+++|+.++.++++++... .-.+||++||...+. +...
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~-----------~~~~ 144 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV-----------GKAN 144 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS-----------SCSS
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC-----------CCCC
Confidence 6899999999754322 34456678999999999998887542 123999999987652 3334
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.||.+.+.+.+.++.+. .++++.+++||.+-.+. . .....
T Consensus 145 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~---------------~---~~~~~--------------- 191 (235)
T 3l6e_A 145 ESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEF---------------W---DNTDH--------------- 191 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcc---------------h---hccCC---------------
Confidence 5689999999999999998875 37899999999887651 0 00000
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.....++..+|+|+++++++..
T Consensus 192 ---~~~~~~~~pedvA~~v~~l~~~ 213 (235)
T 3l6e_A 192 ---VDPSGFMTPEDAAAYMLDALEA 213 (235)
T ss_dssp --------CBCHHHHHHHHHHHTCC
T ss_pred ---CCCcCCCCHHHHHHHHHHHHhC
Confidence 0011367899999999999875
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-23 Score=179.16 Aligned_cols=217 Identities=17% Similarity=0.038 Sum_probs=158.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|++ +|++|++++|+........+.+... +.++.++.+|++|.+++.++++..
T Consensus 4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc----CCeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 9999999999766555444444332 347889999999999999888643
Q ss_pred --CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCC-CC----------C
Q 040584 78 --KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGW-PK----------V 138 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~-~~----------~ 138 (347)
++|+||||||....... .+.+...+++|+.++.++++++...- .++||++||...+.. .. .
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~ 159 (276)
T 1wma_A 80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 159 (276)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccc
Confidence 69999999997543221 23456789999999999999988752 249999999877632 00 0
Q ss_pred CCCCCCC-------------------CCCCCCchhhhHHHHHHHHHHHhhhc------CCceEEEeecccccCCCCCCCC
Q 040584 139 VPCTEEF-------------------PLQAMNPYGRSKLFIEEICRDVHRSD------SEWKIILLRYFNPVGAHPSGKG 193 (347)
Q Consensus 139 ~~~~e~~-------------------~~~~~~~Y~~sK~~~e~~~~~~~~~~------~~~~~~~lR~~~v~G~~~~~~~ 193 (347)
.+++|++ +..|...|+.||.+++.+++.++.++ .++++++++||.+.++..
T Consensus 160 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~---- 235 (276)
T 1wma_A 160 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA---- 235 (276)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTT----
T ss_pred cccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcC----
Confidence 1122211 12244889999999999998887764 389999999999887510
Q ss_pred CCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCC-CCCCCeeEE
Q 040584 194 EDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDD-PKVGCEVYN 264 (347)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~-~~~~~~~~n 264 (347)
. . ..+++.+|+|+++++++..... ....|+.|+
T Consensus 236 -------~-----------~--------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~ 269 (276)
T 1wma_A 236 -------G-----------P--------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVS 269 (276)
T ss_dssp -------C-----------T--------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE
T ss_pred -------C-----------c--------------------cccCChhHhhhhHhhhhcCcccccccCceEec
Confidence 0 0 0146899999999999975321 234556554
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=177.39 Aligned_cols=226 Identities=14% Similarity=0.055 Sum_probs=163.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH-------------
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA------------- 68 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~------------- 68 (347)
|+++||||+|+||++++++|+++|++|++++ |+........+.+... .+.++.++.+|++|.+
T Consensus 10 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (291)
T 1e7w_A 10 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR---RPNSAITVQADLSNVATAPVSGADGSAPV 86 (291)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---STTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhh---cCCeeEEEEeecCCccccccccccccccc
Confidence 7899999999999999999999999999999 8765554444444311 2357889999999998
Q ss_pred ----HHHHHHccC-----CCcEEEEccccccCCcc------------------ccCcchhhhhhhhHHHHHHHHHHH---
Q 040584 69 ----ALEVVFAGT-----KFDAVIHFAGLKAVGES------------------VQKPLPYFDNNLTGTITLLEVMAA--- 118 (347)
Q Consensus 69 ----~~~~~~~~~-----~~d~vih~a~~~~~~~~------------------~~~~~~~~~~nv~~~~~l~~~~~~--- 118 (347)
++.++++.. ++|+||||||....... .+.+...+++|+.++.++++++..
T Consensus 87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~ 166 (291)
T 1e7w_A 87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 166 (291)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 888877643 69999999997543221 233456889999999999887653
Q ss_pred -cC------CCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCC
Q 040584 119 -HG------CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHP 189 (347)
Q Consensus 119 -~~------~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~ 189 (347)
.+ .++||++||...+. +......|+.||.+.+.+.+.++.+. .++.+++++||.+..+.
T Consensus 167 ~~~~~~~~~~g~Iv~isS~~~~~-----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~- 234 (291)
T 1e7w_A 167 GTPAKHRGTNYSIINMVDAMTNQ-----------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD- 234 (291)
T ss_dssp TSCGGGSCSCEEEEEECCTTTTS-----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-
T ss_pred hcCCCCCCCCcEEEEEechhhcC-----------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-
Confidence 34 46999999988763 33456789999999999999887774 37999999999887641
Q ss_pred CCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 190 SGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. .. ........... + -+. .+...+|+|+++++++.... ....++++++.+|.
T Consensus 235 ~--------~~---~~~~~~~~~~~----p---------~~~---r~~~pedvA~~v~~l~s~~~-~~itG~~i~vdGG~ 286 (291)
T 1e7w_A 235 D--------MP---PAVWEGHRSKV----P---------LYQ---RDSSAAEVSDVVIFLCSSKA-KYITGTCVKVDGGY 286 (291)
T ss_dssp G--------SC---HHHHHHHHTTC----T---------TTT---SCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTG
T ss_pred c--------CC---HHHHHHHHhhC----C---------CCC---CCCCHHHHHHHHHHHhCCcc-cCccCcEEEECCCc
Confidence 0 00 11222222111 0 010 25689999999999987522 34678899998775
Q ss_pred cc
Q 040584 270 GT 271 (347)
Q Consensus 270 ~~ 271 (347)
.+
T Consensus 287 ~~ 288 (291)
T 1e7w_A 287 SL 288 (291)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=173.70 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=135.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||+|+||++++++|+++|++|++++|+....+...+.+... +.++.++.+|++|.+++.++++..
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA----GAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999866555444444332 347888999999999998887632
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+++...+++|+.++.++++++.. .+ ++||++||...+. +..
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~-----------~~~ 150 (247)
T 2jah_A 83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRV-----------NVR 150 (247)
T ss_dssp SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTC-----------CCT
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcC-----------CCC
Confidence 6999999999754332 2234566889999999999887653 35 7999999987752 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.+|.+.+.+.+.++.+. .++++++++||.+..+
T Consensus 151 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 191 (247)
T 2jah_A 151 NAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTE 191 (247)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCc
Confidence 45689999999999998887764 3899999999999876
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=171.67 Aligned_cols=221 Identities=15% Similarity=0.123 Sum_probs=163.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||++.||++++++|+++|++|++++|+.+..+. ....++..+.+|++|+++++++++++ ++|
T Consensus 11 GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~----------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iD 80 (242)
T 4b79_A 11 GQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA----------PRHPRIRREELDITDSQRLQRLFEALPRLD 80 (242)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS----------CCCTTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh----------hhcCCeEEEEecCCCHHHHHHHHHhcCCCC
Confidence 4899999999999999999999999999999998765431 12457889999999999999998876 699
Q ss_pred EEEEccccccCCc--cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhh
Q 040584 81 AVIHFAGLKAVGE--SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGR 155 (347)
Q Consensus 81 ~vih~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~ 155 (347)
++|||||...... +.++++..+++|+.++..+.+++... +-++||++||...+ .+......|+.
T Consensus 81 iLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~-----------~~~~~~~~Y~a 149 (242)
T 4b79_A 81 VLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYST-----------FGSADRPAYSA 149 (242)
T ss_dssp EEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGT-----------SCCSSCHHHHH
T ss_pred EEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecccc-----------CCCCCCHHHHH
Confidence 9999999754322 34466779999999999888765432 23699999998764 23344568999
Q ss_pred hHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 156 SKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
||.+...+.+.++.++ .++++.++-||.+--|-.... . .-......+.... ++ +
T Consensus 150 sKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~-------~-~~~~~~~~~~~~~--Pl-----------g--- 205 (242)
T 4b79_A 150 SKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGL-------K-ADVEATRRIMQRT--PL-----------A--- 205 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC------------C-CCHHHHHHHHHTC--TT-----------C---
T ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcc-------c-CCHHHHHHHHhcC--CC-----------C---
Confidence 9999999999888875 479999999998876521111 0 0112233333221 11 1
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
-+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 206 -R~g~peeiA~~v~fLaSd~-a~~iTG~~l~VDGG~ 239 (242)
T 4b79_A 206 -RWGEAPEVASAAAFLCGPG-ASFVTGAVLAVDGGY 239 (242)
T ss_dssp -SCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTG
T ss_pred -CCcCHHHHHHHHHHHhCch-hcCccCceEEECccH
Confidence 2457899999999998652 235688999997763
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=175.75 Aligned_cols=231 Identities=12% Similarity=0.046 Sum_probs=153.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH-ccC-CC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF-AGT-KF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~-~~ 79 (347)
||+++||||+|+||++++++|+++|++|++++|+....+...+ +... +.++..+ |..+.+.+.+.+ +.+ ++
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~----~~~~~~~--d~~~v~~~~~~~~~~~g~i 73 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET----YPQLKPM--SEQEPAELIEAVTSAYGQV 73 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH----CTTSEEC--CCCSHHHHHHHHHHHHSCC
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc----CCcEEEE--CHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999999999999987765544333 3322 2234333 555444332222 111 69
Q ss_pred cEEEEccccc-cCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 80 DAVIHFAGLK-AVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 80 d~vih~a~~~-~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
|+||||||.. .... ..+.+...+++|+.++.++++++. +.+.++||++||...+. +....
T Consensus 74 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~ 142 (254)
T 1zmt_A 74 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG-----------PWKEL 142 (254)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-----------CCTTC
T ss_pred CEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc-----------CCCCc
Confidence 9999999976 3222 233456789999999999988764 44567999999987752 33455
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.||.+.+.+++.++.+. .++++++++||.++||....+...+ ................
T Consensus 143 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~--~~~~~~~~~~~~~~~~-------------- 206 (254)
T 1zmt_A 143 STYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTE--PWKTNPEHVAHVKKVT-------------- 206 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHH--HHTTCHHHHHHHHHHS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCc--ccccChHHHHHHhccC--------------
Confidence 789999999999999887774 3799999999999987421110000 0000001111111100
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....+.+.+|+|+++.+++... .....++++++.+|..
T Consensus 207 ---p~~~~~~p~dvA~~v~~l~s~~-~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 207 ---ALQRLGTQKELGELVAFLASGS-CDYLTGQVFWLAGGFP 244 (254)
T ss_dssp ---SSSSCBCHHHHHHHHHHHHTTS-CGGGTTCEEEESTTCC
T ss_pred ---CCCCCcCHHHHHHHHHHHhCcc-cCCccCCEEEECCCch
Confidence 0112678999999999988752 2235688999987753
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=174.57 Aligned_cols=228 Identities=14% Similarity=0.127 Sum_probs=163.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||++.||+++++.|+++|++|++.+|+.+..+...+++ +.+...+.+|++|.+++++++++.
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-------GGGAVGIQADSANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999866555444333 357788999999999999887643
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
++|++|||||.....+ +.++++..+++|+.++..+++++... +-++||++||...+ .+.....
T Consensus 103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~-----------~~~~~~~ 171 (273)
T 4fgs_A 103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS-----------TGTPAFS 171 (273)
T ss_dssp CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG-----------SCCTTCH
T ss_pred CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc-----------cCCCCch
Confidence 6999999999755433 34456779999999999999987653 23489999998765 2334456
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.||.+...+.+.++.++ .++++.++-||.+-.|.-... ....+..--.+...+...- ++
T Consensus 172 ~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~---~~~~~~~~~~~~~~~~~~~--Pl----------- 235 (273)
T 4fgs_A 172 VYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVEL---AGKDPVQQQGLLNALAAQV--PM----------- 235 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC------------CHHHHHHHHHHHHHHS--TT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHh---hccCchhhHHHHHHHHhcC--CC-----------
Confidence 89999999999999998886 368999999998876521000 0000000001122222111 11
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++++++... .....|+++.+.+|.
T Consensus 236 g----R~g~peeiA~~v~FLaSd~-a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 236 G----RVGRAEEVAAAALFLASDD-SSFVTGAELFVDGGS 270 (273)
T ss_dssp S----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTT
T ss_pred C----CCcCHHHHHHHHHHHhCch-hcCccCCeEeECcCh
Confidence 1 1457899999999999652 235688999997774
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=169.21 Aligned_cols=228 Identities=12% Similarity=0.065 Sum_probs=159.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHh---CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL---GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~---~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
+|+++||||+|+||++++++|++ +|++|++++|+....+...+.+.... .+.++.++.+|++|.+++.++++..
T Consensus 6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (259)
T 1oaa_A 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ--PDLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC--TTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhC--CCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999 89999999998766555544443321 1346788999999999988877532
Q ss_pred ------CCc--EEEEccccccC--C-----ccccCcchhhhhhhhHHHHHHHHHHHc------CCCeEEEeccccccCCC
Q 040584 78 ------KFD--AVIHFAGLKAV--G-----ESVQKPLPYFDNNLTGTITLLEVMAAH------GCKNLVFSSSATAYGWP 136 (347)
Q Consensus 78 ------~~d--~vih~a~~~~~--~-----~~~~~~~~~~~~nv~~~~~l~~~~~~~------~~~~iv~~SS~~~yg~~ 136 (347)
++| +||||||.... . ...+.+...+++|+.++.++++++... +.++||++||...+.
T Consensus 84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 161 (259)
T 1oaa_A 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ-- 161 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS--
T ss_pred hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC--
Confidence 468 99999997532 1 123455678999999999999988753 235799999988762
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 137 KVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 137 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
+..+...|+.||.+.+.+.+.++.+..++++.++.||.+-.+ +...+... .....
T Consensus 162 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~---------------~~~~~~~~-~~~~~ 216 (259)
T 1oaa_A 162 ---------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND---------------MQQLARET-SKDPE 216 (259)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH---------------HHHHHHHH-CSCHH
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcc---------------hHHHHhhc-cCChh
Confidence 344567899999999999999998876789999999876543 11110000 00000
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
....+. .......+...+|+|+++++++.. .....|+.+++.
T Consensus 217 ~~~~~~------~~~p~~~~~~p~dvA~~v~~l~~~--~~~itG~~i~vd 258 (259)
T 1oaa_A 217 LRSKLQ------KLKSDGALVDCGTSAQKLLGLLQK--DTFQSGAHVDFY 258 (259)
T ss_dssp HHHHHH------HHHHTTCSBCHHHHHHHHHHHHHH--CCSCTTEEEETT
T ss_pred HHHHHH------HhhhcCCcCCHHHHHHHHHHHHhh--ccccCCcEEecc
Confidence 000000 000012367899999999999975 234566777663
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=174.79 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=165.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.+..++..+++... +.++..+.+|++|++++++++++.
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK----GYDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT----TCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 489999999999999999999999999999999877666666665543 457888999999999998877542
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----H-cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----A-HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~-~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||.....+ +.++++..+++|+.++..+.+++. + .+-++||++||...+. +.
T Consensus 85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-----------~~ 153 (255)
T 4g81_D 85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-----------AR 153 (255)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------BC
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-----------CC
Confidence 6999999999765443 345667789999999998877643 2 2446999999987652 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH--HHHHHHHcCCCCceEEecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM--PFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~ 223 (347)
.....|+.||.+...+.+.++.++ .++++.++-||.+..|-. ..+. +...+...... ++
T Consensus 154 ~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~-----------~~~~~~~~~~~~~~~~~-Pl----- 216 (255)
T 4g81_D 154 PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMN-----------TALIEDKQFDSWVKSST-PS----- 216 (255)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGG-----------HHHHTCHHHHHHHHHHS-TT-----
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchh-----------hcccCCHHHHHHHHhCC-CC-----
Confidence 445689999999999999888875 379999999998875410 0000 11111111110 11
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 217 ------~----R~g~pediA~~v~fL~S~~-a~~iTG~~i~VDGG~ 251 (255)
T 4g81_D 217 ------Q----RWGRPEELIGTAIFLSSKA-SDYINGQIIYVDGGW 251 (255)
T ss_dssp ------C----SCBCGGGGHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred ------C----CCcCHHHHHHHHHHHhCch-hCCCcCCEEEECCCe
Confidence 1 1456889999999988652 235688999997763
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-22 Score=174.72 Aligned_cols=202 Identities=15% Similarity=0.098 Sum_probs=150.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+|+||||+|+||+++++.|+++|++|++++|+....+...+.+.... ..++.++.+|++|.+++.++++..
T Consensus 28 ~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG---AASAHYIAGTMEDMTFAEQFVAQAGKLM 104 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT---CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC---CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999998766555444443321 236788999999999988887632
Q ss_pred -CCcEEEEc-cccccCCc---cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHF-AGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~-a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+|||| ||...... ..+.+...+++|+.++.++++++... +.++||++||...+. +..+
T Consensus 105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~ 173 (286)
T 1xu9_A 105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV-----------AYPM 173 (286)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS-----------CCTT
T ss_pred CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc-----------CCCC
Confidence 69999999 56543211 22344568899999999998876542 246999999988763 3345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
...|+.||.+.+.+++.++.+. .++.+++++||.+..+ +......+
T Consensus 174 ~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~------------------~~~~~~~~------------ 223 (286)
T 1xu9_A 174 VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE------------------TAMKAVSG------------ 223 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH------------------HHHHHSCG------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCCh------------------hHHHhccc------------
Confidence 6789999999999998877653 4899999999987754 11111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHh
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
.....+++.+|+|++++.++..
T Consensus 224 -----~~~~~~~~~~~vA~~i~~~~~~ 245 (286)
T 1xu9_A 224 -----IVHMQAAPKEECALEIIKGGAL 245 (286)
T ss_dssp -----GGGGGCBCHHHHHHHHHHHHHT
T ss_pred -----cccCCCCCHHHHHHHHHHHHhc
Confidence 1112367899999999999886
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=175.06 Aligned_cols=215 Identities=12% Similarity=0.105 Sum_probs=157.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-------HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-------EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
+|+++||||+|+||++++++|+++|++|++++|+..+. ....+.+... +.++.++.+|++|.+++.+++
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~----g~~~~~~~~Dv~d~~~v~~~~ 120 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV----GGKALPCIVDVRDEQQISAAV 120 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHH
Confidence 37899999999999999999999999999999987642 2233333332 457888999999999999888
Q ss_pred ccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCC
Q 040584 75 AGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 75 ~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~ 141 (347)
+.. ++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+..
T Consensus 121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~------ 194 (346)
T 3kvo_A 121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP------ 194 (346)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC------
Confidence 743 6999999999765332 2334567899999999999998753 35579999999876531
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTV 220 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (347)
.+......|+.||.+++.+++.++.++ .++.+.++.||.+... ++... ..+.
T Consensus 195 ---~~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T-----------------~~~~~-~~~~------ 247 (346)
T 3kvo_A 195 ---VWFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT-----------------AAMDM-LGGP------ 247 (346)
T ss_dssp ---GGTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC-----------------HHHHH-HCC-------
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc-----------------HHHHh-hccc------
Confidence 113456789999999999999998875 4789999999864432 12222 1111
Q ss_pred ecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 221 FGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 221 ~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
.....+...+|+|+++++++.. . ....|+.+ +.
T Consensus 248 ----------~~~~r~~~pedvA~~v~~L~s~-~-~~itG~~i-vd 280 (346)
T 3kvo_A 248 ----------GIESQCRKVDIIADAAYSIFQK-P-KSFTGNFV-ID 280 (346)
T ss_dssp -----------CGGGCBCTHHHHHHHHHHHTS-C-TTCCSCEE-EH
T ss_pred ----------cccccCCCHHHHHHHHHHHHhc-C-CCCCceEE-EC
Confidence 1112356789999999999976 2 23455655 54
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=167.83 Aligned_cols=231 Identities=17% Similarity=0.117 Sum_probs=163.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||++.||++++++|+++|+.|++++|+.+.... .+.+.+. ..++.++.+|++|.+++++++++.
T Consensus 8 KvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~~----~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G 82 (258)
T 4gkb_A 8 KVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQR----QPRATYLPVELQDDAQCRDAVAQTIATFG 82 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHHH----CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHhc----CCCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999998775432 3333333 457889999999999988877542
Q ss_pred CCcEEEEccccccCC---ccccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG---ESVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 78 ~~d~vih~a~~~~~~---~~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
++|++|||||..... .+.+.+...+++|+.++..+.+++... +-++||++||...+. +.....
T Consensus 83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~-----------~~~~~~ 151 (258)
T 4gkb_A 83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT-----------GQGNTS 151 (258)
T ss_dssp CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH-----------CCSSCH
T ss_pred CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc-----------CCCCch
Confidence 699999999975432 234456678899999999887765432 236999999987652 334456
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.||.+.+.+.+.++.++ .++++.++-||.+--|-.......... -......+.... ++
T Consensus 152 ~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~----~~~~~~~~~~~~--pl----------- 214 (258)
T 4gkb_A 152 GYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFED----PEAKLAEIAAKV--PL----------- 214 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC---------------CHHHHHHTTC--TT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccC----hHHHHHHHHhcC--CC-----------
Confidence 89999999999999888775 479999999999876521111000000 000112222111 00
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ +-+...+|+|+++++++... .....|+++.+.+|.+
T Consensus 215 g---~R~g~peeiA~~v~fLaS~~-a~~iTG~~i~VDGG~T 251 (258)
T 4gkb_A 215 G---RRFTTPDEIADTAVFLLSPR-ASHTTGEWLFVDGGYT 251 (258)
T ss_dssp T---TSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTT
T ss_pred C---CCCcCHHHHHHHHHHHhCch-hcCccCCeEEECCCcc
Confidence 1 12557899999999998652 2357889999987753
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=169.29 Aligned_cols=213 Identities=14% Similarity=0.083 Sum_probs=153.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-------hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-------SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
+|+++||||+|+||++++++|+++|++|++++|+... .....+.+... +.++.++.+|++|.+++.+++
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~ 81 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA----GGQGLALKCDIREEDQVRAAV 81 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH----TSEEEEEECCTTCHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHH
Confidence 4789999999999999999999999999999998764 22223333332 457889999999999998887
Q ss_pred ccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCC
Q 040584 75 AGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 75 ~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~ 141 (347)
+.. ++|+||||||...... ..+.+...+++|+.++.++++++.. .+.++||++||...+...
T Consensus 82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 156 (274)
T 3e03_A 82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA----- 156 (274)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH-----
T ss_pred HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-----
Confidence 643 6999999999764432 2234566888999999999888654 345699999998765210
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
+......|+.||.+.+.+.+.++.++ .++++.++.||.+.... +. ....+
T Consensus 157 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~--------------~~----~~~~~------ 208 (274)
T 3e03_A 157 ----WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD--------------AI----NMLPG------ 208 (274)
T ss_dssp ----HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------------C------
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc--------------hh----hhccc------
Confidence 02345679999999999999888775 37999999998544220 11 11110
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeE
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVY 263 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~ 263 (347)
.....+...+|+|+++.+++... .....|+.+
T Consensus 209 -----------~~~~~~~~pedvA~~v~~l~s~~-~~~itG~~i 240 (274)
T 3e03_A 209 -----------VDAAACRRPEIMADAAHAVLTRE-AAGFHGQFL 240 (274)
T ss_dssp -----------CCGGGSBCTHHHHHHHHHHHTSC-CTTCCSCEE
T ss_pred -----------ccccccCCHHHHHHHHHHHhCcc-ccccCCeEE
Confidence 01112568999999999998762 223455666
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=173.84 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=134.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH---HHHccC-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE---VVFAGT- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~~~- 77 (347)
+|+++||||+|+||++++++|++ |+.|++++|+........ + ..++.++.+|+++..... +.++..
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~----~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALA----E-----IEGVEPIESDIVKEVLEEGGVDKLKNLD 74 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHH----T-----STTEEEEECCHHHHHHTSSSCGGGTTCS
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH----h-----hcCCcceecccchHHHHHHHHHHHHhcC
Confidence 47899999999999999999988 999999998754433221 1 236788999998775422 222222
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|+||||||...... +.+.+...+++|+.++.++++++. +.+ ++||++||...+. +...
T Consensus 75 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~-----------~~~~ 142 (245)
T 3e9n_A 75 HVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNG-----------PHPG 142 (245)
T ss_dssp CCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC---------------------
T ss_pred CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCccccc-----------CCCC
Confidence 6999999999765432 233456788999999888877654 333 6999999988763 3345
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.||.+.+.+++.++.+. .++++.+++||.+.++.. ........
T Consensus 143 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~------------------~~~~~~~~------------ 192 (245)
T 3e9n_A 143 NTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPML------------------QGLMDSQG------------ 192 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchh------------------hhhhhhhh------------
Confidence 6789999999999999888764 379999999999887620 01000000
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
.......+++++|+|+++++++.. ...+.++|+
T Consensus 193 -~~~~~~~~~~p~dvA~~i~~l~~~----~~~~~~~~i 225 (245)
T 3e9n_A 193 -TNFRPEIYIEPKEIANAIRFVIDA----GETTQITNV 225 (245)
T ss_dssp ----CCGGGSCHHHHHHHHHHHHTS----CTTEEEEEE
T ss_pred -cccccccCCCHHHHHHHHHHHHcC----CCccceeee
Confidence 001112478899999999999986 235577776
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=166.93 Aligned_cols=221 Identities=17% Similarity=0.148 Sum_probs=162.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.. +...+.+.+. +.++..+.+|++|+++++++++..++|+
T Consensus 9 GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~----g~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 9 GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD----GGNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT----TCCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh----CCcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 479999999999999999999999999999998754 2334444443 4578899999999999888887668999
Q ss_pred EEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcC-CCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 82 VIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 82 vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
+|||||.....+ +.++++..+++|+.+++.+.+++. +.+ -++||++||...+- +......
T Consensus 83 LVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~-----------g~~~~~~ 151 (247)
T 4hp8_A 83 LVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ-----------GGIRVPS 151 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------CCSSCHH
T ss_pred EEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC-----------CCCCChH
Confidence 999999765443 344567799999999999888643 333 46999999987642 3334568
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH--H-HHHHHHcCCCCceEEecccCCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM--P-FVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
|+.||.+...+.+.++.++ .++++.++-||.+--|- ...+. + ....+.. +. ++
T Consensus 152 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~-----------~~~~~~~~~~~~~~~~-~~-Pl--------- 209 (247)
T 4hp8_A 152 YTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNN-----------TEALRADAARNKAILE-RI-PA--------- 209 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG-----------GHHHHTSHHHHHHHHT-TC-TT---------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcc-----------hhhcccCHHHHHHHHh-CC-CC---------
Confidence 9999999999999888875 47999999999876541 00010 0 1111221 11 11
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
+ -+-..+|+|.++++++... .....|+++.|.+|
T Consensus 210 --g----R~g~peeiA~~v~fLaSd~-a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 210 --G----RWGHSEDIAGAAVFLSSAA-ADYVHGAILNVDGG 243 (247)
T ss_dssp --S----SCBCTHHHHHHHHHHTSGG-GTTCCSCEEEESTT
T ss_pred --C----CCcCHHHHHHHHHHHhCch-hcCCcCCeEEECcc
Confidence 1 2456899999999988652 23568899998776
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=168.97 Aligned_cols=231 Identities=14% Similarity=0.046 Sum_probs=156.7
Q ss_pred ceEEEEcC--CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 3 KNILVIGG--VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 3 ~~vlItGa--tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
|+++|||| +|+||++++++|+++|++|++++|+.... .+.+.+. .+.++.++.+|++|.+++.++++..
T Consensus 8 k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (269)
T 2h7i_A 8 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL---IQRITDR---LPAKAPLLELDVQNEEHLASLAGRVTEA 81 (269)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHH---HHHHHTT---SSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHH---HHHHHHh---cCCCceEEEccCCCHHHHHHHHHHHHHH
Confidence 68999999 99999999999999999999999876432 1111111 1346788999999999999888642
Q ss_pred -----CCcEEEEccccccC-----Cc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCC
Q 040584 78 -----KFDAVIHFAGLKAV-----GE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 78 -----~~d~vih~a~~~~~-----~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~ 141 (347)
++|+||||||.... .. ..+.+...+++|+.++.++++++... .-++||++||...+
T Consensus 82 ~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~-------- 153 (269)
T 2h7i_A 82 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR-------- 153 (269)
T ss_dssp HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS--------
T ss_pred hCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccc--------
Confidence 59999999997541 11 23345568899999999999998754 12589999997653
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH----HHHHHHcCCC
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP----FVTQVAVGRR 215 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 215 (347)
+......|+.||.+.+.+.+.++.++ .++++.+++||.+..+...... .......... .........
T Consensus 154 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~- 226 (269)
T 2h7i_A 154 ----AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIV--GGALGEEAGAQIQLLEEGWDQRA- 226 (269)
T ss_dssp ----CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHH--TTTTCHHHHHHHHHHHHHHHHHC-
T ss_pred ----ccCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccc--cccchhhHHHHHHHHHHhhhccC-
Confidence 22345789999999999999887774 4899999999987653100000 0000000000 001111100
Q ss_pred CceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 216 PALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 216 ~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ -+ +.+...+|+|+++.+++... .....|+++++.+|..
T Consensus 227 ---p---------~~---rr~~~p~dvA~~v~~L~s~~-~~~itG~~i~vdGG~~ 265 (269)
T 2h7i_A 227 ---P---------IG---WNMKDATPVAKTVCALLSDW-LPATTGDIIYADGGAH 265 (269)
T ss_dssp ---T---------TC---CCTTCCHHHHHHHHHHHSSS-CTTCCSEEEEESTTGG
T ss_pred ---C---------cc---cCCCCHHHHHHHHHHHhCch-hccCcceEEEecCCee
Confidence 0 01 12557899999999998752 2346789999977743
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=163.65 Aligned_cols=228 Identities=13% Similarity=0.088 Sum_probs=163.2
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+| .||.++++.|+++|++|++.+|+....+...+.+.+. .+.++.++.+|++|.+++.++++..
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL---NQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG---TCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 38999999887 8999999999999999999999877766655555543 2357889999999999988877542
Q ss_pred ---CCcEEEEccccccCCc----cc----cCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGE----SV----QKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~----~~----~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||...... .. +.+...+++|+.++..+..++... +-++||++||....
T Consensus 83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~----------- 151 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE----------- 151 (256)
T ss_dssp HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT-----------
T ss_pred HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc-----------
Confidence 6999999999653221 11 223345678888888888777654 23589999998764
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.||.+.+.+.+.++.++ .++++.++.||.+-.|..... ...-.....+.... ++
T Consensus 152 ~~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~--------~~~~~~~~~~~~~~--Pl---- 217 (256)
T 4fs3_A 152 FAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV--------GGFNTILKEIKERA--PL---- 217 (256)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC--------TTHHHHHHHHHHHS--TT----
T ss_pred cCcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc--------cCCHHHHHHHHhcC--CC----
Confidence 244456789999999999999888775 379999999998765421110 01112333332211 11
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|-
T Consensus 218 -------~----R~g~peevA~~v~fL~Sd~-a~~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 218 -------K----RNVDQVEVGKTAAYLLSDL-SSGVTGENIHVDSGF 252 (256)
T ss_dssp -------S----SCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred -------C----CCcCHHHHHHHHHHHhCch-hcCccCCEEEECcCH
Confidence 1 1456899999999998652 234678999997774
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=172.42 Aligned_cols=183 Identities=20% Similarity=0.145 Sum_probs=137.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH-HHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK-AALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~--- 77 (347)
+|+|+||||+|+||++++++|+++|++|++++|+..+.....+.+... ...++.++.+|++|. +++.++++..
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS---NHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT---TCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999877665555555432 235789999999998 7777766532
Q ss_pred --CCcEEEEccccccCC----------------------------------ccccCcchhhhhhhhHHHHHHHHHHH---
Q 040584 78 --KFDAVIHFAGLKAVG----------------------------------ESVQKPLPYFDNNLTGTITLLEVMAA--- 118 (347)
Q Consensus 78 --~~d~vih~a~~~~~~----------------------------------~~~~~~~~~~~~nv~~~~~l~~~~~~--- 118 (347)
++|+||||||..... ...+.++..+++|+.++.++++++..
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 699999999975321 12233455789999999999887653
Q ss_pred -cCCCeEEEeccccccCCCCC--------------------------------CCCCCCCCCCCCCchhhhHHHHHHHHH
Q 040584 119 -HGCKNLVFSSSATAYGWPKV--------------------------------VPCTEEFPLQAMNPYGRSKLFIEEICR 165 (347)
Q Consensus 119 -~~~~~iv~~SS~~~yg~~~~--------------------------------~~~~e~~~~~~~~~Y~~sK~~~e~~~~ 165 (347)
.+.++||++||...+..... ....+.....+...|+.||.+.+.+++
T Consensus 169 ~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~ 248 (311)
T 3o26_A 169 LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR 248 (311)
T ss_dssp TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHHH
Confidence 34569999999876522100 001111122345679999999999999
Q ss_pred HHhhhcCCceEEEeecccccCC
Q 040584 166 DVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 166 ~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
.+++++.++.+.++.||.|..+
T Consensus 249 ~la~e~~~i~v~~v~PG~v~T~ 270 (311)
T 3o26_A 249 VLANKIPKFQVNCVCPGLVKTE 270 (311)
T ss_dssp HHHHHCTTSEEEEECCCSBCSG
T ss_pred HHHhhcCCceEEEecCCceecC
Confidence 9999987899999999988764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-21 Score=165.20 Aligned_cols=170 Identities=16% Similarity=0.099 Sum_probs=131.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+++||||+|+||++++++|+++|++|++++|+........+.+... +.++.++.+|++|.+++.++++.
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T 2qq5_A 5 GQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL----GGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----SSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999866555444444432 34678899999999988887653
Q ss_pred -CCCcEEEEccc--cc-----cCC----ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCC
Q 040584 77 -TKFDAVIHFAG--LK-----AVG----ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVP 140 (347)
Q Consensus 77 -~~~d~vih~a~--~~-----~~~----~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~ 140 (347)
.++|+|||||| .. ... ...+.+...+++|+.++.++.+++. +.+.++||++||...+.
T Consensus 81 ~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 154 (260)
T 2qq5_A 81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQ------ 154 (260)
T ss_dssp TTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTS------
T ss_pred CCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcC------
Confidence 15899999994 32 111 1223455688889999987776654 44567999999988752
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 141 CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 141 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
..+...|+.||.+.+.+.+.++.+. .++++++++||.+..+
T Consensus 155 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 197 (260)
T 2qq5_A 155 ------YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTE 197 (260)
T ss_dssp ------CCSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTT
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccH
Confidence 1234689999999999999887663 3899999999998876
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=171.75 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=133.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhh--ccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELA--GYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+|+||||+|+||++++++|+++|++|+++.|+........+.+.... ...+.++.++.+|++|.+++.++++..
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 4789999999999999999999999998887765544332222222221 111347889999999999999998753
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|+||||||...... ..+.+...+++|+.++.++++++ ++.+.++||++||...+. +..
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~-----------~~~ 150 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM-----------GLP 150 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS-----------CCT
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc-----------CCC
Confidence 5999999999754322 23345678999999999998885 445677999999987752 223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
....|+.||.+++.+++.++.+. .++++++++||.|..+
T Consensus 151 ~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~ 191 (327)
T 1jtv_A 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccCh
Confidence 45689999999999999888763 3899999999998875
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=161.38 Aligned_cols=222 Identities=11% Similarity=0.026 Sum_probs=147.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-e--CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH-HHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-D--NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV-VFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~ 77 (347)
+|+++||||+|+||++++++|+++|++|+++ + |+....+...+.+ .+.+.. |..+.+.+.+ +.+.+
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~ 70 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN--------PGTIAL--AEQKPERLVDATLQHG 70 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS--------TTEEEC--CCCCGGGHHHHHGGGS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh--------CCCccc--CHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999998 5 7654443322221 122222 5444443333 33322
Q ss_pred -CCcEEEEccccccC---Cc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV---GE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEF 145 (347)
Q Consensus 78 -~~d~vih~a~~~~~---~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~ 145 (347)
++|+||||||.... .. ..+.+...+++|+.++.++++++. +.+.++||++||...+.
T Consensus 71 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------- 139 (244)
T 1zmo_A 71 EAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK----------- 139 (244)
T ss_dssp SCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC-----------
Confidence 69999999997543 22 233456689999999999888765 44567999999988763
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH--HHHHHHHcCCCCceEEe
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM--PFVTQVAVGRRPALTVF 221 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 221 (347)
+......|+.||.+.+.+.+.++.+. .++++++++||.+-.+... . ...+. ........... +
T Consensus 140 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-------~-~~~~~~~~~~~~~~~~~~-p---- 206 (244)
T 1zmo_A 140 PLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYF-------P-TSDWENNPELRERVDRDV-P---- 206 (244)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTB-------C-HHHHHHCHHHHHHHHHHC-T----
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccc-------c-cccccchHHHHHHHhcCC-C----
Confidence 33455789999999999999887764 3799999999988765100 0 00000 11111111000 0
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...+...+|+|+++.+++... .....++.+.+.+|.
T Consensus 207 -----------~~r~~~pe~vA~~v~~l~s~~-~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 207 -----------LGRLGRPDEMGALITFLASRR-AAPIVGQFFAFTGGY 242 (244)
T ss_dssp -----------TCSCBCHHHHHHHHHHHHTTT-TGGGTTCEEEESTTC
T ss_pred -----------CCCCcCHHHHHHHHHHHcCcc-ccCccCCEEEeCCCC
Confidence 012568999999999998752 223567889887664
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=176.33 Aligned_cols=222 Identities=15% Similarity=0.026 Sum_probs=158.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+++++||||+|+||.++++.|+++|++|++++|+... +...+..... ++.++.+|++|.+++.++++..
T Consensus 213 gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~------~~~~~~~Dvtd~~~v~~~~~~~~~~~ 285 (454)
T 3u0b_A 213 GKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV------GGTALTLDVTADDAVDKITAHVTEHH 285 (454)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH------TCEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999886432 2222222222 4578999999999988887642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|+||||||...... +.+.+...+++|+.++.++.+++... +..+||++||...+. +.
T Consensus 286 g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~-----------g~ 354 (454)
T 3u0b_A 286 GGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA-----------GN 354 (454)
T ss_dssp TTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH-----------CC
T ss_pred CCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC-----------CC
Confidence 3999999999765432 33445678999999999999998875 566999999987652 23
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|...+.+++.++.+. .+++++++.||.+..+-.. .+...........
T Consensus 355 ~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~-----------~~~~~~~~~~~~~----------- 412 (454)
T 3u0b_A 355 RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTE-----------AIPLATREVGRRL----------- 412 (454)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC---------------------CHHHHHS-----------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhh-----------hcchhhHHHHHhh-----------
Confidence 345789999999999998887664 4899999999998875210 0000000100000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....+...+|+++++.+++... .....++++++.++.
T Consensus 413 -----~~l~r~g~pedvA~~v~fL~s~~-a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 413 -----NSLFQGGQPVDVAELIAYFASPA-SNAVTGNTIRVCGQA 450 (454)
T ss_dssp -----BTTSSCBCHHHHHHHHHHHHCGG-GTTCCSCEEEESSSB
T ss_pred -----ccccCCCCHHHHHHHHHHHhCCc-cCCCCCcEEEECCcc
Confidence 01112457899999999988752 235678999997764
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-21 Score=169.90 Aligned_cols=271 Identities=16% Similarity=0.117 Sum_probs=172.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC---------CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN---------LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
+|+++||||+|+||+++++.|+++|++|++.++ +..+.+...+.+... .. ...+|+.|.+++.+
T Consensus 9 gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~----~~---~~~~D~~~~~~~~~ 81 (319)
T 1gz6_A 9 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR----GG---KAVANYDSVEAGEK 81 (319)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT----TC---EEEEECCCGGGHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh----CC---eEEEeCCCHHHHHH
Confidence 378999999999999999999999999998754 333333333444332 11 23479999887766
Q ss_pred HHcc----C-CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccc-cCCCCC
Q 040584 73 VFAG----T-KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATA-YGWPKV 138 (347)
Q Consensus 73 ~~~~----~-~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~-yg~~~~ 138 (347)
+++. + ++|+||||||...... +.+.++..+++|+.++.++++++ ++.+.++||++||... ++
T Consensus 82 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~---- 157 (319)
T 1gz6_A 82 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG---- 157 (319)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC----
Confidence 6542 2 6999999999754322 33455678999999999888876 3445679999999754 43
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCC
Q 040584 139 VPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRP 216 (347)
Q Consensus 139 ~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
..+...|+.||.+.+.+.+.++.+. .++++++++||.+ .+. .....
T Consensus 158 --------~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~-----------~~~~~------------ 205 (319)
T 1gz6_A 158 --------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRM-----------TETVM------------ 205 (319)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STT-----------TGGGS------------
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccc-----------ccccC------------
Confidence 2245689999999999999988774 3799999999875 320 00000
Q ss_pred ceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCC
Q 040584 217 ALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR 296 (347)
Q Consensus 217 ~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~ 296 (347)
+.....++..+|+|+++++++.. .....++.|++.++...... +.+..|. .....+ .
T Consensus 206 -------------~~~~~~~~~p~dvA~~~~~l~s~--~~~~tG~~~~v~GG~~~~~~-----~~~~~~~--~~~~~~-~ 262 (319)
T 1gz6_A 206 -------------PEDLVEALKPEYVAPLVLWLCHE--SCEENGGLFEVGAGWIGKLR-----WERTLGA--IVRKRN-Q 262 (319)
T ss_dssp -------------CHHHHHHSCGGGTHHHHHHHTST--TCCCCSCEEEEETTEEEEEE-----EEECCCE--ECCBTT-B
T ss_pred -------------ChhhhccCCHHHHHHHHHHHhCc--hhhcCCCEEEECCCeEEEEe-----eeeccce--eccCCC-C
Confidence 00111245788999999988865 12356789998777432210 0000010 000000 0
Q ss_pred CCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 297 ~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
....+...---+...+..|+....++.+.+++.++++.+.+.
T Consensus 263 ~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
T 1gz6_A 263 PMTPEAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDS 304 (319)
T ss_dssp CCCHHHHHHTHHHHTCCTTCBCCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHhhccc
Confidence 011111100111233445777667999999999887766543
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=174.57 Aligned_cols=203 Identities=16% Similarity=0.170 Sum_probs=149.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchh---HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNAS---EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+++++||||+|+||.++++.|+++|+. |++++|+.... ....+.+... +.++.++.+|++|.+++.++++..
T Consensus 226 ~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~----g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 226 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL----GARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc----CCEEEEEEeCCCCHHHHHHHHHHH
Confidence 478999999999999999999999995 88898876432 2233333332 457889999999999999999853
Q ss_pred ----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 ----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|+|||+||...... +.+.....+++|+.++.++.++++..+.++||++||...+- +...
T Consensus 302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~-----------g~~g 370 (486)
T 2fr1_A 302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF-----------GAPG 370 (486)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT-----------CCTT
T ss_pred HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcC-----------CCCC
Confidence 4699999999765322 23345568888999999999999888888999999976541 1223
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
...|+.+|..++.+..++... ++++++++||.+.+++ +. ...... .+
T Consensus 371 ~~~Yaaaka~l~~la~~~~~~--gi~v~~i~pG~~~~~g--------------m~---~~~~~~---~~----------- 417 (486)
T 2fr1_A 371 LGGYAPGNAYLDGLAQQRRSD--GLPATAVAWGTWAGSG--------------MA---EGPVAD---RF----------- 417 (486)
T ss_dssp CTTTHHHHHHHHHHHHHHHHT--TCCCEEEEECCBC--------------------------------C-----------
T ss_pred CHHHHHHHHHHHHHHHHHHhc--CCeEEEEECCeeCCCc--------------cc---chhHHH---HH-----------
Confidence 468999999999988876543 8999999999988641 00 000000 00
Q ss_pred CceeeeeeeHHHHHHHHHHHHHh
Q 040584 230 GTVVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~ 252 (347)
......+++.+|+++++..++..
T Consensus 418 ~~~g~~~i~~e~~a~~l~~~l~~ 440 (486)
T 2fr1_A 418 RRHGVIEMPPETACRALQNALDR 440 (486)
T ss_dssp TTTTEECBCHHHHHHHHHHHHHT
T ss_pred HhcCCCCCCHHHHHHHHHHHHhC
Confidence 01123578999999999999986
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=157.56 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=153.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||++.||++++++|+++|++|++.+|+.... ..+...+.+|++|.+++.++++..
T Consensus 12 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 77 (261)
T 4h15_A 12 KRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG--------------LPEELFVEADLTTKEGCAIVAEATRQRLG 77 (261)
T ss_dssp CEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT--------------SCTTTEEECCTTSHHHHHHHHHHHHHHTS
T ss_pred CEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC--------------CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999875432 123457889999999988877542
Q ss_pred CCcEEEEccccccCC------ccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 ~~d~vih~a~~~~~~------~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||..... .+.+++...+++|+.++..+.+++. +.+-++||++||...+- +.
T Consensus 78 ~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~-----------~~ 146 (261)
T 4h15_A 78 GVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVL-----------PL 146 (261)
T ss_dssp SCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CC
T ss_pred CCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhcc-----------CC
Confidence 699999999964321 1334566789999999998877644 44567999999987641 22
Q ss_pred C-CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc-------
Q 040584 148 Q-AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA------- 217 (347)
Q Consensus 148 ~-~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 217 (347)
. ....|+.||.+.+.+.+.++.++ .++++.++.||.+--|. ...+...........
T Consensus 147 ~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~--------------~~~~~~~~~~~~~~~~~~~~~~ 212 (261)
T 4h15_A 147 PESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEA--------------SVRLAERLAKQAGTDLEGGKKI 212 (261)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH--------------HHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcc--------------hhhhhHHHHHhhccchhhHHHH
Confidence 2 34679999999999999888875 47999999998876431 111111110000000
Q ss_pred eEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 218 LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 218 ~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+...- ......-+...+|+|+++.+++... .....|+++++.+|-
T Consensus 213 ~~~~~------~~~PlgR~g~peevA~~v~fLaS~~-a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 213 IMDGL------GGIPLGRPAKPEEVANLIAFLASDR-AASITGAEYTIDGGT 257 (261)
T ss_dssp HHHHT------TCCTTSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC
T ss_pred HHHHh------cCCCCCCCcCHHHHHHHHHHHhCch-hcCccCcEEEECCcC
Confidence 00000 0001112567899999999988652 235688999997774
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=165.44 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=148.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchh---HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNAS---EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+++|+||||+|+||.++++.|+++|+ .|++++|+.... ....+++.. .+.++.++.+|++|.+++.++++..
T Consensus 259 ~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~----~g~~v~~~~~Dvtd~~~v~~~~~~~ 334 (511)
T 2z5l_A 259 SGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRG----HGCEVVHAACDVAERDALAALVTAY 334 (511)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHT----TTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHh----cCCEEEEEEeCCCCHHHHHHHHhcC
Confidence 47899999999999999999999999 588888876432 223333332 2457889999999999999999854
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccc-cCCCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATA-YGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~-yg~~~~~~~~e~~~~~~~~ 151 (347)
.+|+|||+||...... ..+.....+++|+.++.++.+++... +.++||++||... +| .....
T Consensus 335 ~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g------------~~g~~ 402 (511)
T 2z5l_A 335 PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWG------------NAGQG 402 (511)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTC------------CTTBH
T ss_pred CCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCC------------CCCCH
Confidence 6999999999765432 22334567889999999999998776 6789999999754 33 23346
Q ss_pred chhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCc
Q 040584 152 PYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
.|+.+|..++.+++.+.. .++++++++||.+-+. ++..... ...+..
T Consensus 403 ~YaaaKa~ld~la~~~~~--~gi~v~sv~pG~~~~t----------gm~~~~~--~~~~~~------------------- 449 (511)
T 2z5l_A 403 AYAAANAALDALAERRRA--AGLPATSVAWGLWGGG----------GMAAGAG--EESLSR------------------- 449 (511)
T ss_dssp HHHHHHHHHHHHHHHHHT--TTCCCEEEEECCBCST----------TCCCCHH--HHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHH--cCCcEEEEECCcccCC----------ccccccc--HHHHHh-------------------
Confidence 899999999999987654 3899999999877321 1111111 111110
Q ss_pred eeeeeeeHHHHHHHHHHHHHh
Q 040584 232 VVRDYIHVVDLADGHIAALRK 252 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~ 252 (347)
....+++.+|+++++..++..
T Consensus 450 ~g~~~l~~e~~a~~l~~al~~ 470 (511)
T 2z5l_A 450 RGLRAMDPDAAVDALLGAMGR 470 (511)
T ss_dssp HTBCCBCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhC
Confidence 012368899999999999987
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-20 Score=169.33 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=124.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
.|||+||||+||||++++..|+++|+ +|+++++.+.... .......+. ...+.++ .|+.+.+++.+++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~-~~g~~~dl~---~~~~~~~-~di~~~~~~~~a~ 78 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKA-LEGVVMELE---DCAFPLL-AGLEATDDPKVAF 78 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHH-HHHHHHHHH---TTTCTTE-EEEEEESCHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhh-ccchhhhhh---ccccccc-CCeEeccChHHHh
Confidence 37899999999999999999999996 8999987542111 111111111 1111222 5776666677888
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CC-eEEEeccccc-cCCCCCCCCC-CCC-CCCC
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CK-NLVFSSSATA-YGWPKVVPCT-EEF-PLQA 149 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~-~iv~~SS~~~-yg~~~~~~~~-e~~-~~~~ 149 (347)
+ ++|+|||+||..... ...+.++++.|+.++.++++++++.+ .+ +++++|+... .. +.. |.. +.+|
T Consensus 79 ~--~~D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p 149 (327)
T 1y7t_A 79 K--DADYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNP 149 (327)
T ss_dssp T--TCSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCG
T ss_pred C--CCCEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCCh
Confidence 7 699999999976432 34567789999999999999999985 54 7888777431 10 011 112 3456
Q ss_pred CCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 188 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~ 188 (347)
.+.|+.+|...|++...+++.+ +++.+++|+++|||||
T Consensus 150 ~~~yg~tkl~~er~~~~~a~~~-g~~~~~vr~~~V~G~h 187 (327)
T 1y7t_A 150 RNFTAMTRLDHNRAKAQLAKKT-GTGVDRIRRMTVWGNH 187 (327)
T ss_dssp GGEEECCHHHHHHHHHHHHHHH-TCCGGGEECCEEEBCS
T ss_pred hheeccchHHHHHHHHHHHHHh-CcChhheeeeEEEcCC
Confidence 6789999999999999888776 8999999999999986
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=163.36 Aligned_cols=170 Identities=20% Similarity=0.222 Sum_probs=134.8
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCch---hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNA---SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
|+++++||||+|+||.++++.|+++|+ .|++++|+... .....+.+... +.++.++.+|++|.+++.++++.
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~----g~~v~~~~~Dvtd~~~v~~~~~~ 313 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL----GVRVTIAACDAADREALAALLAE 313 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHH
Confidence 568999999999999999999999998 77888886433 23333334332 45788999999999999999875
Q ss_pred C----CCcEEEEccccc-cCCc----cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 77 T----KFDAVIHFAGLK-AVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 77 ~----~~d~vih~a~~~-~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
. ++|+|||+||.. .... +.+.....+++|+.++.++.+++.....++||++||...+- +.
T Consensus 314 i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~-----------g~ 382 (496)
T 3mje_A 314 LPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVW-----------GS 382 (496)
T ss_dssp CCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHT-----------TC
T ss_pred HHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcC-----------CC
Confidence 3 589999999976 3222 23345668899999999999999988888999999976641 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
.....|+.+|...+.+.+++... +++++++.||.+.++
T Consensus 383 ~g~~~YaAaKa~ldala~~~~~~--Gi~v~sV~pG~w~~~ 420 (496)
T 3mje_A 383 GGQPGYAAANAYLDALAEHRRSL--GLTASSVAWGTWGEV 420 (496)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECEESSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHhc--CCeEEEEECCcccCC
Confidence 34568999999999999876543 999999999988764
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=156.46 Aligned_cols=231 Identities=9% Similarity=0.030 Sum_probs=146.4
Q ss_pred CceEEEEcCC--CcccHHHHHHHHhCCCeEEEEeCCCchhH----HHHHHHHHhhccCCCC----eEEEecC--------
Q 040584 2 AKNILVIGGV--GYIGSHTVLQLLLGGYKTVVVDNLDNASE----IAVAKVKELAGYQGNN----MTFHKLD-------- 63 (347)
Q Consensus 2 ~~~vlItGat--G~iG~~l~~~L~~~g~~v~~~~r~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~D-------- 63 (347)
+|+++||||+ |+||++++++|+++|++|++++|++.... ...+.+.......... ...+.+|
T Consensus 8 ~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 87 (297)
T 1d7o_A 8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPED 87 (297)
T ss_dssp TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSGGG
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccchhh
Confidence 3789999999 99999999999999999999876421100 0000011110000000 2333333
Q ss_pred CCC------------HHHHHHHHccC-----CCcEEEEcccccc--CC----ccccCcchhhhhhhhHHHHHHHHHHHc-
Q 040584 64 LRD------------KAALEVVFAGT-----KFDAVIHFAGLKA--VG----ESVQKPLPYFDNNLTGTITLLEVMAAH- 119 (347)
Q Consensus 64 l~d------------~~~~~~~~~~~-----~~d~vih~a~~~~--~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~- 119 (347)
+.+ .+++.++++.. ++|+||||||... .. .+.+.+...+++|+.++.++++++...
T Consensus 88 v~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 167 (297)
T 1d7o_A 88 VPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIM 167 (297)
T ss_dssp SCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 321 33444444321 6999999998532 11 133455678999999999999998764
Q ss_pred -CCCeEEEeccccccCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCCCCCCCCC
Q 040584 120 -GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGAHPSGKGE 194 (347)
Q Consensus 120 -~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~~~~~~~~ 194 (347)
..++||++||...+. +.... ..|+.||.+.+.+.+.++.++ .++++++++||.+.+|...
T Consensus 168 ~~~g~iv~isS~~~~~-----------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~---- 232 (297)
T 1d7o_A 168 NPGGASISLTYIASER-----------IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAK---- 232 (297)
T ss_dssp EEEEEEEEEECGGGTS-----------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSS----
T ss_pred ccCceEEEEecccccc-----------CCCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhh----
Confidence 125899999987652 22223 479999999999999888763 3899999999999987311
Q ss_pred CCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 195 DPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.. ...+ +........ ++ ..+...+|+|+++++++... .....++.+++.+|..
T Consensus 233 -~~----~~~~~~~~~~~~~~--p~---------------~r~~~pedvA~~v~~l~s~~-~~~itG~~i~vdgG~~ 286 (297)
T 1d7o_A 233 -AI----GFIDTMIEYSYNNA--PI---------------QKTLTADEVGNAAAFLVSPL-ASAITGATIYVDNGLN 286 (297)
T ss_dssp -CC----SHHHHHHHHHHHHS--SS---------------CCCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTGG
T ss_pred -hc----cccHHHHHHhhccC--CC---------------CCCCCHHHHHHHHHHHhCcc-ccCCCCCEEEECCCce
Confidence 00 0112 222222111 11 12468999999999888652 2245778999987743
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=168.20 Aligned_cols=210 Identities=15% Similarity=0.095 Sum_probs=143.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC---------CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN---------LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
+|+++||||+|+||++++++|+++|++|++++| +....+...+.+... ... ..+|++|.+++.+
T Consensus 19 gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~----~~~---~~~D~~d~~~~~~ 91 (613)
T 3oml_A 19 GRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA----GGE---AVADYNSVIDGAK 91 (613)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT----TCC---EEECCCCGGGHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh----CCe---EEEEeCCHHHHHH
Confidence 478999999999999999999999999999877 444444444444432 112 3479999988888
Q ss_pred HHccC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCC
Q 040584 73 VFAGT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 73 ~~~~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~ 139 (347)
+++.. ++|+||||||...... +.+.+...+++|+.++.++++++ ++.+.++||++||...+-
T Consensus 92 ~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~----- 166 (613)
T 3oml_A 92 VIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIY----- 166 (613)
T ss_dssp HHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH-----
T ss_pred HHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC-----
Confidence 87643 6999999999764432 34456678999999999998887 444567999999976541
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA 217 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (347)
+......|+.||.+.+.+.+.++.+. .++.+.++.|+.+- + ...+..
T Consensus 167 ------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~----------------------~~~~~~-- 215 (613)
T 3oml_A 167 ------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-R----------------------MTEGIL-- 215 (613)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------CCCC--
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-h----------------------hhhhcc--
Confidence 23345689999999999999888775 37899999987421 1 000000
Q ss_pred eEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 218 LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 218 ~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.......+..+|+|+++.+++... ....|+++++.+|
T Consensus 216 ------------~~~~~~~~~pedvA~~v~~L~s~~--~~~tG~~i~vdGG 252 (613)
T 3oml_A 216 ------------PDILFNELKPKLIAPVVAYLCHES--CEDNGSYIESAAG 252 (613)
T ss_dssp ------------CHHHHTTCCGGGTHHHHHHTTSTT--CCCCSCEEEEETT
T ss_pred ------------chhhhhcCCHHHHHHHHHHhcCCC--cCCCceEEEECCC
Confidence 011122347889999999888762 3457788887655
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-18 Score=159.66 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=129.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEE-eCCCc-------------hhHHHHHHHHHhhccCCCCeEEEecCCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVV-DNLDN-------------ASEIAVAKVKELAGYQGNNMTFHKLDLRD 66 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~-~r~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 66 (347)
+++++||||+|.||.++++.|+++|+. |+++ +|+.. ......+.+... +.++.++.+|++|
T Consensus 251 ~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~v~~~~~Dvtd 326 (525)
T 3qp9_A 251 DGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL----GATATVVTCDLTD 326 (525)
T ss_dssp TSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH----TCEEEEEECCTTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc----CCEEEEEECCCCC
Confidence 478999999999999999999999998 5566 77742 233344444443 4578899999999
Q ss_pred HHHHHHHHccC----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC-----CCeEEEecccccc
Q 040584 67 KAALEVVFAGT----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG-----CKNLVFSSSATAY 133 (347)
Q Consensus 67 ~~~~~~~~~~~----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~-----~~~iv~~SS~~~y 133 (347)
.+++.++++.. .+|+|||+||...... +.+.....+++|+.++.++.+++.... .++||++||...+
T Consensus 327 ~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~ 406 (525)
T 3qp9_A 327 AEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI 406 (525)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence 99999998753 5899999999765432 233456688999999999999988765 6799999998765
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccc
Q 040584 134 GWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184 (347)
Q Consensus 134 g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v 184 (347)
- +......|+.+|..++.+..++.. .+++++++.||.+
T Consensus 407 ~-----------g~~g~~~YaaaKa~l~~lA~~~~~--~gi~v~sI~pG~~ 444 (525)
T 3qp9_A 407 W-----------GGAGQGAYAAGTAFLDALAGQHRA--DGPTVTSVAWSPW 444 (525)
T ss_dssp T-----------CCTTCHHHHHHHHHHHHHHTSCCS--SCCEEEEEEECCB
T ss_pred C-----------CCCCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEECCcc
Confidence 2 233456899999999998765543 3899999999987
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=148.96 Aligned_cols=235 Identities=14% Similarity=0.074 Sum_probs=144.3
Q ss_pred ceEEEEcC--CCcccHHHHHHHHhCCCeEEEEeCCCch-------hHHHHHHHHHhhc-cCCCCeEEEecCC--------
Q 040584 3 KNILVIGG--VGYIGSHTVLQLLLGGYKTVVVDNLDNA-------SEIAVAKVKELAG-YQGNNMTFHKLDL-------- 64 (347)
Q Consensus 3 ~~vlItGa--tG~iG~~l~~~L~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~Dl-------- 64 (347)
|+++|||| +|+||++++++|+++|++|++++|++.. .....+.+..+.. ........+.+|+
T Consensus 10 k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (315)
T 2o2s_A 10 QTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKPEDV 89 (315)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSSTTSS
T ss_pred CEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccccchh
Confidence 68999999 8999999999999999999998875310 0000011111100 0000124444443
Q ss_pred ----C--------CHHHHHHHHccC-----CCcEEEEcccccc--CC----ccccCcchhhhhhhhHHHHHHHHHHHc--
Q 040584 65 ----R--------DKAALEVVFAGT-----KFDAVIHFAGLKA--VG----ESVQKPLPYFDNNLTGTITLLEVMAAH-- 119 (347)
Q Consensus 65 ----~--------d~~~~~~~~~~~-----~~d~vih~a~~~~--~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~-- 119 (347)
+ |.+++.++++.. ++|+||||||... .. ...+.+...+++|+.++.++++++...
T Consensus 90 ~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~ 169 (315)
T 2o2s_A 90 PQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIMN 169 (315)
T ss_dssp CHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHSTTEE
T ss_pred hhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 2 133455544321 6999999999642 11 123445678999999999999988653
Q ss_pred CCCeEEEeccccccCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCCCCCCCCCC
Q 040584 120 GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGAHPSGKGED 195 (347)
Q Consensus 120 ~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~~~~~~~~~ 195 (347)
.-++||++||...+. +.... ..|+.||.+.+.+.+.++.++ .++++.+++||.+..+-.......
T Consensus 170 ~~g~Iv~isS~~~~~-----------~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~ 238 (315)
T 2o2s_A 170 EGGSAVTLSYLAAER-----------VVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKS 238 (315)
T ss_dssp EEEEEEEEEEGGGTS-----------CCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTCS
T ss_pred cCCEEEEEecccccc-----------cCCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhhhcccc
Confidence 125899999987652 22223 479999999999999887763 489999999998865410000000
Q ss_pred CCCCCCccHHHH-HHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 196 PRGIPNNLMPFV-TQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 196 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. ...+.... ....... + ...+...+|+|+++++++... .....|+.+.+.+|.
T Consensus 239 --~-~~~~~~~~~~~~~~~~--p---------------~~r~~~pedvA~~v~~L~s~~-~~~itG~~i~vdGG~ 292 (315)
T 2o2s_A 239 --G-EKSFIDYAIDYSYNNA--P---------------LRRDLHSDDVGGAALFLLSPL-ARAVSGVTLYVDNGL 292 (315)
T ss_dssp --S-SSCHHHHHHHHHHHHS--S---------------SCCCCCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTG
T ss_pred --c-cchhHHHHHHHHhccC--C---------------CCCCCCHHHHHHHHHHHhCch-hccCcCCEEEECCCe
Confidence 0 00011111 1111100 0 012467899999999988752 234678899887774
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=149.95 Aligned_cols=236 Identities=14% Similarity=0.053 Sum_probs=128.3
Q ss_pred ceEEEEcC--CCcccHHHHHHHHhCCCeEEEEeCCC-----------chhHH-----------HHHHHHHhhccCCCCeE
Q 040584 3 KNILVIGG--VGYIGSHTVLQLLLGGYKTVVVDNLD-----------NASEI-----------AVAKVKELAGYQGNNMT 58 (347)
Q Consensus 3 ~~vlItGa--tG~iG~~l~~~L~~~g~~v~~~~r~~-----------~~~~~-----------~~~~~~~~~~~~~~~~~ 58 (347)
|+++|||| +|+||+++++.|+++|++|++++|++ .+... ..+++..... ......
T Consensus 10 k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (319)
T 2ptg_A 10 KTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPV-DLVFDK 88 (319)
T ss_dssp CEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC---------------------------------CCSE
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccc-cccccc
Confidence 68999999 89999999999999999999987642 11110 0111110000 000124
Q ss_pred EEecCC--CC------------------HHHHHHHHccC-----CCcEEEEcccccc--CCc----cccCcchhhhhhhh
Q 040584 59 FHKLDL--RD------------------KAALEVVFAGT-----KFDAVIHFAGLKA--VGE----SVQKPLPYFDNNLT 107 (347)
Q Consensus 59 ~~~~Dl--~d------------------~~~~~~~~~~~-----~~d~vih~a~~~~--~~~----~~~~~~~~~~~nv~ 107 (347)
.+.+|+ .+ .+++.++++.. ++|+||||||... ... ..+.+...+++|+.
T Consensus 89 ~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~ 168 (319)
T 2ptg_A 89 IYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSY 168 (319)
T ss_dssp EEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHTH
T ss_pred cccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHhhH
Confidence 444442 22 22445444321 6999999999642 111 23445678899999
Q ss_pred HHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHHHhhhc---CCceEEEeec
Q 040584 108 GTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM-NPYGRSKLFIEEICRDVHRSD---SEWKIILLRY 181 (347)
Q Consensus 108 ~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~ 181 (347)
++.++++++... .-++||++||...+. +.... ..|+.||.+.+.+.+.++.++ .++++.+++|
T Consensus 169 g~~~l~~~~~~~m~~~g~Iv~isS~~~~~-----------~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~P 237 (319)
T 2ptg_A 169 SFVSLLQHFLPLMKEGGSALALSYIASEK-----------VIPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISA 237 (319)
T ss_dssp HHHHHHHHHGGGEEEEEEEEEEEECC-----------------------------THHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCceEEEEecccccc-----------ccCccchhhHHHHHHHHHHHHHHHHHhccccCeeEEEEee
Confidence 999999988764 125999999987642 22223 479999999999999887763 3899999999
Q ss_pred ccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCe
Q 040584 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCE 261 (347)
Q Consensus 182 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~ 261 (347)
|.+..+......... .. .+...... .+. .......+...+|+|+++++++... .....|+
T Consensus 238 G~v~T~~~~~~~~~~---~~---~~~~~~~~----~~~---------~~~p~~r~~~peevA~~v~~L~s~~-~~~itG~ 297 (319)
T 2ptg_A 238 GPLKSRAASAIGKAG---DK---TFIDLAID----YSE---------ANAPLQKELESDDVGRAALFLLSPL-ARAVTGA 297 (319)
T ss_dssp CCCC--------------------------------------------------CCCHHHHHHHHHHHTSGG-GTTCCSC
T ss_pred CCccChhhhhccccc---ch---hhHHHHHH----HHh---------ccCCCCCCCCHHHHHHHHHHHhCcc-cCCccCC
Confidence 998765211000000 00 00000000 000 0001123568999999999988752 2346789
Q ss_pred eEEccCCCc
Q 040584 262 VYNLGTGKG 270 (347)
Q Consensus 262 ~~nv~~~~~ 270 (347)
++.+.+|..
T Consensus 298 ~i~vdGG~~ 306 (319)
T 2ptg_A 298 TLYVDNGLH 306 (319)
T ss_dssp EEEESTTCT
T ss_pred EEEECCCce
Confidence 999987754
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=147.12 Aligned_cols=175 Identities=11% Similarity=-0.033 Sum_probs=122.5
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchh--HHHHHHHH---Hhh---ccCCCCeEEEecCCCCH--H-
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNAS--EIAVAKVK---ELA---GYQGNNMTFHKLDLRDK--A- 68 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~--~~~~~~~~---~~~---~~~~~~~~~~~~Dl~d~--~- 68 (347)
+|+++||||++ .||.+++++|+++|++|++..|++... ....+... ... ......+.++.+|+++. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 57899999875 999999999999999999877653110 00000000 000 11122367788888876 5
Q ss_pred -----------------HHHHHHccC-----CCcEEEEcccccc--CCc----cccCcchhhhhhhhHHHHHHHHHHHc-
Q 040584 69 -----------------ALEVVFAGT-----KFDAVIHFAGLKA--VGE----SVQKPLPYFDNNLTGTITLLEVMAAH- 119 (347)
Q Consensus 69 -----------------~~~~~~~~~-----~~d~vih~a~~~~--~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~- 119 (347)
++.++++.. ++|+||||||... ... ..+.+...+++|+.++..+++++...
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666655432 6999999999632 111 23445678999999999999987654
Q ss_pred -CCCeEEEeccccccCCCCCCCCCCCCCCCCCC-chhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCC
Q 040584 120 -GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN-PYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGA 187 (347)
Q Consensus 120 -~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~-~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~ 187 (347)
.-++||++||...+. +..... .|+.||.+.+.+.+.++.+. .++.+.++.||.+-.+
T Consensus 162 ~~~g~Iv~isS~~~~~-----------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 162 KPQSSIISLTYHASQK-----------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEECGGGTS-----------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred hhCCeEEEEeCccccC-----------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 115899999987652 233343 89999999999998887764 2899999999988654
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.6e-16 Score=148.25 Aligned_cols=212 Identities=19% Similarity=0.153 Sum_probs=143.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCC-CCHHHHH-HHHccC-C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL-RDKAALE-VVFAGT-K 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~~~-~~~~~~-~ 78 (347)
+|+++||||++.||+++++.|+++|++|++.+|.. .+...+++... +.++..+.+|+ .+.+.+. ++.+.+ +
T Consensus 322 gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~----g~~~~~~~~Dv~~~~~~~~~~~~~~~G~ 395 (604)
T 2et6_A 322 DKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAA----GGEAWPDQHDVAKDSEAIIKNVIDKYGT 395 (604)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHT----TCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred CCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhc----CCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999987632 23334444332 23566677888 5544332 222222 6
Q ss_pred CcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 79 ~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
+|++|||||...... +.+.+...+++|+.++.++.+++. +.+-++||++||...+- +....
T Consensus 396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~-----------~~~~~ 464 (604)
T 2et6_A 396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY-----------GNFGQ 464 (604)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-----------CCTTB
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc-----------CCCCC
Confidence 999999999754322 334566789999999998877654 33456999999976531 22234
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTK 228 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (347)
..|+.||.+...+.+.++.+. .++++.++.||. -.+ +.. .... . .
T Consensus 465 ~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~---------------m~~---~~~~-~--~----------- 511 (604)
T 2et6_A 465 ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETA---------------MTL---SIMR-E--Q----------- 511 (604)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCC---------------C-------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCc---------------ccc---ccCc-h--h-----------
Confidence 679999999999999888774 378999999872 111 100 0000 0 0
Q ss_pred CCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 229 DGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 229 ~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.......+|+|+++.+++... .. ..++++.+.+|.
T Consensus 512 ----~~~~~~pe~vA~~v~~L~s~~-~~-itG~~~~vdGG~ 546 (604)
T 2et6_A 512 ----DKNLYHADQVAPLLVYLGTDD-VP-VTGETFEIGGGW 546 (604)
T ss_dssp -----CCSSCGGGTHHHHHHTTSTT-CC-CCSCEEEEETTE
T ss_pred ----hccCCCHHHHHHHHHHHhCCc-cC-CCCcEEEECCCe
Confidence 012346889999999887652 23 678899887763
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-15 Score=143.30 Aligned_cols=227 Identities=13% Similarity=0.122 Sum_probs=150.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC---------chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD---------NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
+|+++||||++.||+++++.|+++|+.|++.+|.. ...+...+++... +.... +|+.|.++.++
T Consensus 8 gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~----g~~~~---~d~~d~~~~~~ 80 (604)
T 2et6_A 8 DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN----GGVAV---ADYNNVLDGDK 80 (604)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT----TCEEE---EECCCTTCHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc----CCeEE---EEcCCHHHHHH
Confidence 37899999999999999999999999999987754 3333334444332 12222 45555443333
Q ss_pred HH----ccC-CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCC
Q 040584 73 VF----AGT-KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 73 ~~----~~~-~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~ 139 (347)
++ +.+ ++|++|||||...... +.++++..+++|+.++..+.+++. +.+-++||++||...+-
T Consensus 81 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~----- 155 (604)
T 2et6_A 81 IVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY----- 155 (604)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC-----
Confidence 32 222 6999999999754322 334567799999999998877654 34556999999976531
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA 217 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (347)
+......|+.||.+...+.+.++.+. .++++.++.|+ +-. ++.... ..
T Consensus 156 ------~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T------------------~m~~~~---~~-- 205 (604)
T 2et6_A 156 ------GNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARS------------------RMTESI---MP-- 205 (604)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCC------------------HHHHTT---SC--
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcC------------------cccccc---CC--
Confidence 22234579999999999999888774 37899998885 111 111100 00
Q ss_pred eEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC------------------CcccHHHHHHH
Q 040584 218 LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG------------------KGTSVLEMVAA 279 (347)
Q Consensus 218 ~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~------------------~~~s~~e~~~~ 279 (347)
.........+|++.++.+++... ....++++.+.+| ..++..++.+.
T Consensus 206 -------------~~~~~~~~pe~vA~~v~~L~s~~--~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 270 (604)
T 2et6_A 206 -------------PPMLEKLGPEKVAPLVLYLSSAE--NELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKR 270 (604)
T ss_dssp -------------HHHHTTCSHHHHHHHHHHHTSSS--CCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHH
T ss_pred -------------hhhhccCCHHHHHHHHHHHhCCc--ccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHH
Confidence 00011246899999999888762 3456788887654 34677888887
Q ss_pred HHHHhC
Q 040584 280 FEKASG 285 (347)
Q Consensus 280 i~~~~g 285 (347)
+.++..
T Consensus 271 ~~~~~~ 276 (604)
T 2et6_A 271 FSEILD 276 (604)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 776654
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=135.20 Aligned_cols=173 Identities=12% Similarity=-0.035 Sum_probs=123.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeCCCchhH------------HHHHHHHHhhccCCCCeEEEecCCCCHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDNASE------------IAVAKVKELAGYQGNNMTFHKLDLRDKA 68 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 68 (347)
.|+++||||++.||.++++.|++ .|+.|++++|...... ...+.+.. .+..+..+.+|++|.+
T Consensus 47 gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~----~G~~a~~i~~Dvtd~~ 122 (405)
T 3zu3_A 47 PKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ----KGLYAKSINGDAFSDE 122 (405)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHH----TTCCEEEEESCTTSHH
T ss_pred CCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHh----cCCceEEEECCCCCHH
Confidence 47899999999999999999999 9999999887655422 11122222 2446788999999999
Q ss_pred HHHHHHccC-----CCcEEEEcccccc-------------CC-------------------------ccccCcchhhhhh
Q 040584 69 ALEVVFAGT-----KFDAVIHFAGLKA-------------VG-------------------------ESVQKPLPYFDNN 105 (347)
Q Consensus 69 ~~~~~~~~~-----~~d~vih~a~~~~-------------~~-------------------------~~~~~~~~~~~~n 105 (347)
++.++++.. ++|++|||||... .. .+.+.+...+++|
T Consensus 123 ~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn 202 (405)
T 3zu3_A 123 IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVM 202 (405)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhh
Confidence 988877532 6999999999641 11 1223345567778
Q ss_pred hhHHH-HHHHHHHHcC----CCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--C-CceEE
Q 040584 106 LTGTI-TLLEVMAAHG----CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--S-EWKII 177 (347)
Q Consensus 106 v~~~~-~l~~~~~~~~----~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~-~~~~~ 177 (347)
..++. .+++++.... -.++|++||....-. .|......|+.||.+.+.+.+.++.++ . ++++.
T Consensus 203 ~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~---------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVN 273 (405)
T 3zu3_A 203 GGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT---------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDAR 273 (405)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG---------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred chhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc---------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCeEEE
Confidence 77766 5666554322 248999999765310 122223789999999999999998886 4 78999
Q ss_pred EeecccccCC
Q 040584 178 LLRYFNPVGA 187 (347)
Q Consensus 178 ~lR~~~v~G~ 187 (347)
++-||.+--+
T Consensus 274 aVaPG~i~T~ 283 (405)
T 3zu3_A 274 VSVLKAVVSQ 283 (405)
T ss_dssp EEECCCCCCH
T ss_pred EEEeCCCcCc
Confidence 9999887654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-15 Score=153.56 Aligned_cols=172 Identities=19% Similarity=0.172 Sum_probs=129.1
Q ss_pred CceEEEEcCCCc-ccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc---
Q 040584 2 AKNILVIGGVGY-IGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG--- 76 (347)
Q Consensus 2 ~~~vlItGatG~-iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 76 (347)
+|+++||||+|+ ||.++++.|+++|+.|+++ .|+........+.+....+..+.++.++.+|++|.+++.++++.
T Consensus 675 gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i~~ 754 (1887)
T 2uv8_A 675 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYD 754 (1887)
T ss_dssp TCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 378999999998 9999999999999999988 46555554444444332222245688899999999999887752
Q ss_pred ------C--CCcEEEEccccccCC-cc------ccCcchhhhhhhhHHHHHHHHHHHcC------CCeEEEeccccccCC
Q 040584 77 ------T--KFDAVIHFAGLKAVG-ES------VQKPLPYFDNNLTGTITLLEVMAAHG------CKNLVFSSSATAYGW 135 (347)
Q Consensus 77 ------~--~~d~vih~a~~~~~~-~~------~~~~~~~~~~nv~~~~~l~~~~~~~~------~~~iv~~SS~~~yg~ 135 (347)
+ ++|+||||||..... .. .+.+...+++|+.++..++++++... .++||++||...+.
T Consensus 755 ~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~~- 833 (1887)
T 2uv8_A 755 TEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTF- 833 (1887)
T ss_dssp CTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTCS-
T ss_pred hccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhcc-
Confidence 2 499999999976443 22 23346789999999999999875432 25899999976541
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHH-HHHHhhhcC-CceEEEeecccccC
Q 040584 136 PKVVPCTEEFPLQAMNPYGRSKLFIEEI-CRDVHRSDS-EWKIILLRYFNPVG 186 (347)
Q Consensus 136 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~~-~~~~~~lR~~~v~G 186 (347)
+ ....|+.||.+.+.+ .+.++.+.. .+.++++.||.+-+
T Consensus 834 ----------g--g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~t 874 (1887)
T 2uv8_A 834 ----------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 874 (1887)
T ss_dssp ----------S--CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEEC
T ss_pred ----------C--CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 1 345799999999998 666666542 38999999999874
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=150.89 Aligned_cols=171 Identities=18% Similarity=0.144 Sum_probs=125.2
Q ss_pred CceEEEEcCCCc-ccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc---
Q 040584 2 AKNILVIGGVGY-IGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG--- 76 (347)
Q Consensus 2 ~~~vlItGatG~-iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 76 (347)
+++++||||+|. ||.++++.|+++|++|++++ |+........+.+.......+.++.++.+|++|.+++.++++.
T Consensus 652 gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i~~ 731 (1878)
T 2uv9_A 652 GKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYIYD 731 (1878)
T ss_dssp TCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 378999999999 99999999999999999885 5444443333444222222245688899999999999888752
Q ss_pred ----C--CCcEEEEccccccCC-cc------ccCcchhhhhhhhHHHHHHHHHHHc------CCCeEEEeccccccCCCC
Q 040584 77 ----T--KFDAVIHFAGLKAVG-ES------VQKPLPYFDNNLTGTITLLEVMAAH------GCKNLVFSSSATAYGWPK 137 (347)
Q Consensus 77 ----~--~~d~vih~a~~~~~~-~~------~~~~~~~~~~nv~~~~~l~~~~~~~------~~~~iv~~SS~~~yg~~~ 137 (347)
+ ++|+||||||..... .. .+.+...+++|+.++..++++++.. +.++||++||...+.
T Consensus 732 ~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~--- 808 (1878)
T 2uv9_A 732 TKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF--- 808 (1878)
T ss_dssp SSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS---
T ss_pred hhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc---
Confidence 3 489999999976443 22 2344678999999999888774322 225899999976531
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhh-c-CCceEEEeeccccc
Q 040584 138 VVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRS-D-SEWKIILLRYFNPV 185 (347)
Q Consensus 138 ~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~-~~~~~~~lR~~~v~ 185 (347)
+ ....|+.+|.+.+.+++.+..+ . ..++++++.||.+-
T Consensus 809 --------g--g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~ 848 (1878)
T 2uv9_A 809 --------G--NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTR 848 (1878)
T ss_dssp --------S--CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBC
T ss_pred --------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccee
Confidence 1 2468999999999998765443 2 23899999999876
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=153.60 Aligned_cols=172 Identities=19% Similarity=0.170 Sum_probs=123.9
Q ss_pred CceEEEEcCCCc-ccHHHHHHHHhCCCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc---
Q 040584 2 AKNILVIGGVGY-IGSHTVLQLLLGGYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG--- 76 (347)
Q Consensus 2 ~~~vlItGatG~-iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 76 (347)
+|+++||||+|+ ||+++++.|+++|++|+++ .|+........+.+....+..+.++.++.+|++|.+++.++++.
T Consensus 476 GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I~e 555 (1688)
T 2pff_A 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYD 555 (1688)
T ss_dssp SCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHHHS
T ss_pred CCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 378999999998 9999999999999999988 56555444333333221111234678899999999998887752
Q ss_pred ------C--CCcEEEEccccccCC-cc------ccCcchhhhhhhhHHHHHHHHHHHc------CCCeEEEeccccccCC
Q 040584 77 ------T--KFDAVIHFAGLKAVG-ES------VQKPLPYFDNNLTGTITLLEVMAAH------GCKNLVFSSSATAYGW 135 (347)
Q Consensus 77 ------~--~~d~vih~a~~~~~~-~~------~~~~~~~~~~nv~~~~~l~~~~~~~------~~~~iv~~SS~~~yg~ 135 (347)
+ ++|+||||||..... .. .+.+...+++|+.++..++++++.. +.++||++||...+.
T Consensus 556 ~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~~- 634 (1688)
T 2pff_A 556 TEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTF- 634 (1688)
T ss_dssp CTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTTS-
T ss_pred hccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhcc-
Confidence 2 499999999975443 21 2334678999999999999887432 124899999976531
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHH-HHHHhhhc-CCceEEEeecccccC
Q 040584 136 PKVVPCTEEFPLQAMNPYGRSKLFIEEI-CRDVHRSD-SEWKIILLRYFNPVG 186 (347)
Q Consensus 136 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~-~~~~~~~lR~~~v~G 186 (347)
+ ....|+.||.+.+.+ .+.++.+. ..++++++.||.+-|
T Consensus 635 ----------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 635 ----------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp ----------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred ----------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence 1 346899999999998 44444443 237888888888764
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=145.14 Aligned_cols=167 Identities=23% Similarity=0.323 Sum_probs=129.4
Q ss_pred CceEEEEcCCCcccHHHHHHHH-hCCC-eEEEEeCCCch---hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLL-LGGY-KTVVVDNLDNA---SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~-~~g~-~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
+++++||||+|.||+.+++.|+ ++|+ .|++++|+... .....+++... +.++.++.+|++|.+++.+++++
T Consensus 530 ~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~----G~~v~~~~~Dvsd~~~v~~~~~~ 605 (795)
T 3slk_A 530 AGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY----GAEVSLQACDVADRETLAKVLAS 605 (795)
T ss_dssp TSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHT
T ss_pred ccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhc----CCcEEEEEeecCCHHHHHHHHHH
Confidence 5789999999999999999999 7898 48888888433 33334444332 45788999999999999999875
Q ss_pred C----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 77 T----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 77 ~----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
. .+|+||||||...... +.+.+...+++|+.|+.++.+++.. .. +||++||...+- +..
T Consensus 606 ~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~-----------g~~ 672 (795)
T 3slk_A 606 IPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVL-----------GSG 672 (795)
T ss_dssp SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHH-----------TCS
T ss_pred HHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcC-----------CCC
Confidence 3 5899999999765432 3345667889999999999998732 34 899999987641 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
....|+.+|...+.+.+++... |++++++-||.+-.+
T Consensus 673 g~~~YaAaka~~~alA~~~~~~--Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 673 GQGNYAAANSFLDALAQQRQSR--GLPTRSLAWGPWAEH 709 (795)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHT--TCCEEEEEECCCSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHc--CCeEEEEECCeECcc
Confidence 4568999999888888877654 999999999876643
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-15 Score=133.50 Aligned_cols=173 Identities=16% Similarity=0.022 Sum_probs=121.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeCCCchhHH------------HHHHHHHhhccCCCCeEEEecCCCCHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDNASEI------------AVAKVKELAGYQGNNMTFHKLDLRDKA 68 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 68 (347)
.|++|||||++.||.++++.|++ .|+.|++++|....... ..+.+.. .+.++..+.+|++|.+
T Consensus 61 gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~----~G~~a~~i~~Dvtd~~ 136 (422)
T 3s8m_A 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA----AGLYSKSINGDAFSDA 136 (422)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH----TTCCEEEEESCTTSHH
T ss_pred CCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHh----cCCcEEEEEecCCCHH
Confidence 57899999999999999999999 99999999887654321 1122222 2456788999999999
Q ss_pred HHHHHHcc----C--CCcEEEEccccc-------------cCCc-------------------------cccCcchhhhh
Q 040584 69 ALEVVFAG----T--KFDAVIHFAGLK-------------AVGE-------------------------SVQKPLPYFDN 104 (347)
Q Consensus 69 ~~~~~~~~----~--~~d~vih~a~~~-------------~~~~-------------------------~~~~~~~~~~~ 104 (347)
+++++++. + ++|+||||||.. ...+ +.+.+...+++
T Consensus 137 ~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~V 216 (422)
T 3s8m_A 137 ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITV 216 (422)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHh
Confidence 88876642 2 699999999862 1111 12223345555
Q ss_pred hhhHHH-HHHHHHHHcC----CCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEE
Q 040584 105 NLTGTI-TLLEVMAAHG----CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKII 177 (347)
Q Consensus 105 nv~~~~-~l~~~~~~~~----~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~ 177 (347)
|..+.. .+++++.... -.+||++||....-. .|......|+.||.+.+.+.+.++.+. .++++.
T Consensus 217 n~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~---------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVN 287 (422)
T 3s8m_A 217 MGGQDWELWIDALEGAGVLADGARSVAFSYIGTEIT---------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGAN 287 (422)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG---------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred hchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc---------CCCccchHHHHHHHHHHHHHHHHHHHhCccCEEEE
Confidence 665554 5666654432 248999999765310 011122679999999999999888775 479999
Q ss_pred EeecccccCC
Q 040584 178 LLRYFNPVGA 187 (347)
Q Consensus 178 ~lR~~~v~G~ 187 (347)
++.||.+--+
T Consensus 288 aVaPG~i~T~ 297 (422)
T 3s8m_A 288 VAVLKSVVTQ 297 (422)
T ss_dssp EEEECCCCCT
T ss_pred EEEcCCCcCh
Confidence 9999987765
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=131.40 Aligned_cols=175 Identities=13% Similarity=-0.003 Sum_probs=120.0
Q ss_pred CceEEEEcCCCcccHH--HHHHHHhCCCeEEEEeCCCchhHH--------HHHHHHHhhccCCCCeEEEecCCCCHHHHH
Q 040584 2 AKNILVIGGVGYIGSH--TVLQLLLGGYKTVVVDNLDNASEI--------AVAKVKELAGYQGNNMTFHKLDLRDKAALE 71 (347)
Q Consensus 2 ~~~vlItGatG~iG~~--l~~~L~~~g~~v~~~~r~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (347)
+|+++||||++.||.+ +++.|++.|+.|++++|....... ..+.+.+.....+.++..+.+|++|.++++
T Consensus 60 gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~v~ 139 (418)
T 4eue_A 60 PKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETKD 139 (418)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHHHH
Confidence 4789999999999999 999999999999999886554210 011122121122457888999999999888
Q ss_pred HHHccC-----CCcEEEEcccccc-------------CCc-------------------------cccCcchhhhhhhhH
Q 040584 72 VVFAGT-----KFDAVIHFAGLKA-------------VGE-------------------------SVQKPLPYFDNNLTG 108 (347)
Q Consensus 72 ~~~~~~-----~~d~vih~a~~~~-------------~~~-------------------------~~~~~~~~~~~nv~~ 108 (347)
++++.. ++|++|||||... ..+ ..+.+...+++|..+
T Consensus 140 ~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~~~ 219 (418)
T 4eue_A 140 KVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMGGE 219 (418)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhhHH
Confidence 877532 6999999999641 001 112223355555555
Q ss_pred HH-HHHHHHHHcC----CCeEEEeccccccCCCCCCCCCCCCCCCCC--CchhhhHHHHHHHHHHHhhhcC---CceEEE
Q 040584 109 TI-TLLEVMAAHG----CKNLVFSSSATAYGWPKVVPCTEEFPLQAM--NPYGRSKLFIEEICRDVHRSDS---EWKIIL 178 (347)
Q Consensus 109 ~~-~l~~~~~~~~----~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~--~~Y~~sK~~~e~~~~~~~~~~~---~~~~~~ 178 (347)
.. .++.++.... -.++|++||....- +.... ..|+.||.+.+.+.+.++.+.. ++++.+
T Consensus 220 ~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~-----------~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~ 288 (418)
T 4eue_A 220 DWQEWCEELLYEDCFSDKATTIAYSYIGSPR-----------TYKIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFV 288 (418)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEECCCCGG-----------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEEeCchhcC-----------CCCccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEE
Confidence 44 4555554432 24899999976431 22233 7899999999999998887752 689999
Q ss_pred eecccccCC
Q 040584 179 LRYFNPVGA 187 (347)
Q Consensus 179 lR~~~v~G~ 187 (347)
+-||.+--+
T Consensus 289 V~PG~v~T~ 297 (418)
T 4eue_A 289 SVNKALVTK 297 (418)
T ss_dssp EECCCCCCH
T ss_pred EECCcCcCh
Confidence 999887654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=141.56 Aligned_cols=169 Identities=16% Similarity=0.154 Sum_probs=121.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+++++||||+|.||..+++.|+++|+. |++++|+..+.+...+.+..+.. .+.++..+.+|++|.+++.++++..
T Consensus 1884 ~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1884 HKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRR-QGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHH-TTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHh-CCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999999997 77788876654333222332211 2446788899999999988877532
Q ss_pred -CCcEEEEccccccCC----ccccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~----~~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
.+|+|||+||..... .+.+.+...+++|+.|+.++.+++... ..++||++||....- +....
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~-----------g~~g~ 2031 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR-----------GNAGQ 2031 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT-----------TCTTC
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC-----------CCCCc
Confidence 699999999975422 245567789999999999998887654 346999999976541 22334
Q ss_pred CchhhhHHHHHHHHHHHhhhcCCceEEEeecccc
Q 040584 151 NPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNP 184 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v 184 (347)
..|+.+|...+.+.+....+ |++...+-.+.+
T Consensus 2032 ~~Y~aaKaal~~l~~~rr~~--Gl~~~a~~~g~~ 2063 (2512)
T 2vz8_A 2032 ANYGFANSAMERICEKRRHD--GLPGLAVQWGAI 2063 (2512)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TSCCCEEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCcEEEEEccCc
Confidence 67999999999999866554 888888777654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=96.77 Aligned_cols=96 Identities=27% Similarity=0.303 Sum_probs=76.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+|+|+|+|+ |++|+.+++.|.+.| ++|++++|++.+.+... ..++..+.+|+.+.+.+.++++ ++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----------~~~~~~~~~d~~~~~~~~~~~~--~~ 70 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----------RMGVATKQVDAKDEAGLAKALG--GF 70 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----------TTTCEEEECCTTCHHHHHHHTT--TC
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----------hCCCcEEEecCCCHHHHHHHHc--CC
Confidence 5789999999 999999999999999 99999998755433221 2367788999999999999988 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEe
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFS 127 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~ 127 (347)
|+|||+++.. ....+++++.+.+++++...
T Consensus 71 d~vi~~~~~~------------------~~~~~~~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 71 DAVISAAPFF------------------LTPIIAKAAKAAGAHYFDLT 100 (118)
T ss_dssp SEEEECSCGG------------------GHHHHHHHHHHTTCEEECCC
T ss_pred CEEEECCCch------------------hhHHHHHHHHHhCCCEEEec
Confidence 9999998532 13478888998888555433
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=126.26 Aligned_cols=173 Identities=11% Similarity=0.033 Sum_probs=117.5
Q ss_pred CceEEEEcCCCc-ccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc---
Q 040584 2 AKNILVIGGVGY-IGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG--- 76 (347)
Q Consensus 2 ~~~vlItGatG~-iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 76 (347)
+|+++||||++. ||.++++.|++.|+.|++++|+.... ....+.+.......+.++..+.+|++|.+++.++++.
T Consensus 2136 gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i~~ 2215 (3089)
T 3zen_D 2136 DEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWVGT 2215 (3089)
T ss_dssp CCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHTS
T ss_pred CCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHHHh
Confidence 578999999999 99999999999999999999877651 1112222222222344677889999999998887542
Q ss_pred ------CCCcEEEEcccc----ccCC-----ccccCcchh----hhhhhhHHHHHHHHHHH----cCCC---eEEEeccc
Q 040584 77 ------TKFDAVIHFAGL----KAVG-----ESVQKPLPY----FDNNLTGTITLLEVMAA----HGCK---NLVFSSSA 130 (347)
Q Consensus 77 ------~~~d~vih~a~~----~~~~-----~~~~~~~~~----~~~nv~~~~~l~~~~~~----~~~~---~iv~~SS~ 130 (347)
-++|++|||||. .... ...+++... +++|+.++..++.++.. .+.. .+|..+|.
T Consensus 2216 ~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ss 2295 (3089)
T 3zen_D 2216 EQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPGSP 2295 (3089)
T ss_dssp CCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEECS
T ss_pred hhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEECCc
Confidence 158999999997 2111 122233333 78899998888776553 2221 22222221
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhh--c-CCceEEEeecccccC
Q 040584 131 TAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRS--D-SEWKIILLRYFNPVG 186 (347)
Q Consensus 131 ~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~-~~~~~~~lR~~~v~G 186 (347)
. .+ .......|+.||.+.+.+.+.++.+ . .++.++.+.||.+-+
T Consensus 2296 ~-~g-----------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~t 2342 (3089)
T 3zen_D 2296 N-RG-----------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKG 2342 (3089)
T ss_dssp S-TT-----------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEEC
T ss_pred c-cc-----------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCC
Confidence 1 11 1112347999999999999999988 3 467888888887764
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=110.13 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=110.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCC----CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNL----DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE 71 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (347)
|||+||||+||+|++++..|+.+|+ +|.++++. ..+.+.....+.+. .. .. ..|+....++.
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~---~~-~~---~~~i~~~~~~~ 78 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC---AF-PL---LAGMTAHADPM 78 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT---TC-TT---EEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh---cc-cc---cCcEEEecCcH
Confidence 6999999999999999999999885 78888776 22222212222221 00 11 13444445677
Q ss_pred HHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-CC-eEEEecccc-c--cCCCCCCCCCCCC-
Q 040584 72 VVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-CK-NLVFSSSAT-A--YGWPKVVPCTEEF- 145 (347)
Q Consensus 72 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~-~iv~~SS~~-~--yg~~~~~~~~e~~- 145 (347)
++++ ++|+|||+||.... ......+++..|+..++++++++.+.. .. +||++|.-. + |-.. +..
T Consensus 79 ~al~--~aD~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~------~~~~ 148 (329)
T 1b8p_A 79 TAFK--DADVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM------KSAP 148 (329)
T ss_dssp HHTT--TCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH------HTCT
T ss_pred HHhC--CCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHH------HHcC
Confidence 8888 69999999996542 223445678899999999999999884 55 899988722 1 0000 001
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCC
Q 040584 146 PLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAH 188 (347)
Q Consensus 146 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~ 188 (347)
..++...++.++....++...+++.. +++...++..+|+|-|
T Consensus 149 ~~p~~~v~g~t~Ld~~r~~~~la~~l-gv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 149 SLPAKNFTAMLRLDHNRALSQIAAKT-GKPVSSIEKLFVWGNH 190 (329)
T ss_dssp TSCGGGEEECCHHHHHHHHHHHHHHH-TCCGGGEESCEEEBCS
T ss_pred CCCHHHEEEeecHHHHHHHHHHHHHh-CcCHHHceEEEEEecc
Confidence 12233458888777777777777665 6666666666678854
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.6e-10 Score=99.76 Aligned_cols=117 Identities=17% Similarity=0.146 Sum_probs=83.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|||+|+||+||+|..++..|+++| ++|+++++.+. ......+.+. .....+ .+ +.+.+++.++++ ++
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~----~~~~~v-~~-~~~t~d~~~al~--ga 77 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHM----DTGAVV-RG-FLGQQQLEAALT--GM 77 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTS----CSSCEE-EE-EESHHHHHHHHT--TC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcc----cccceE-EE-EeCCCCHHHHcC--CC
Confidence 5799999999999999999999998 89999987654 1111112211 011111 11 234567888888 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
|+|||+||..... .....+++..|+.+++++++++.+.+.+.+|+++|.
T Consensus 78 DvVi~~ag~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 78 DLIIVPAGVPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp SEEEECCCCCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CEEEEcCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 9999999965421 223456789999999999999999887777777763
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-10 Score=99.49 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=100.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeC--CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDN--LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|||+||||+||+|++++..|+.+|. ++.++++ ...+.+.....+.+.....+..+.+...+ +++.++++ +
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~--g 74 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIID--E 74 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGT--T
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhC--C
Confidence 5899999999999999999999885 5777776 32222221222222211111223332221 12455677 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhh-hH
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGR-SK 157 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~-sK 157 (347)
+|+|||+||.... ......++++.|+.+++++++++++.+ +++|+++|.=+--... ........++...+|. +.
T Consensus 75 aD~Vi~~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~--~~~k~~~~p~~rviG~gt~ 149 (313)
T 1hye_A 75 SDVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTY--KALVDSKFERNQVFGLGTH 149 (313)
T ss_dssp CSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHH--HHHHHHCCCTTSEEECTTH
T ss_pred CCEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHH--HHHHhhCcChhcEEEeCcc
Confidence 9999999996542 122345678999999999999999988 8777777743210000 0000012344455666 55
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCC
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
....++...+++.. +++...++. .++|-
T Consensus 150 LD~~r~~~~la~~l-gv~~~~v~~-~v~G~ 177 (313)
T 1hye_A 150 LDSLRFKVAIAKFF-GVHIDEVRT-RIIGE 177 (313)
T ss_dssp HHHHHHHHHHHHHH-TCCGGGEEC-CEEEC
T ss_pred HHHHHHHHHHHHHh-CcCHHHeEE-EEeec
Confidence 54555555555543 444333443 55653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=93.99 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=78.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeC--CCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDN--LDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|||+||||+|++|++++..|+.+|+ ++.++++ ...+.+.....+.+... ....+.+.. + + .++++ +
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~-~--~----~~a~~--~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQ-G--G----YEDTA--G 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEE-C--C----GGGGT--T
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEe-C--C----HHHhC--C
Confidence 6899999999999999999999886 6777776 33222221222222211 122333333 2 2 33466 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
+|+|||+||..... .....+++..|+.+++++++++++.+...+|+++|.
T Consensus 71 aDvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 71 SDVVVITAGIPRQP--GQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp CSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99999999965321 223346789999999999999999877777777764
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.7e-10 Score=96.97 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=66.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++||||+|++|+++++.|++.|++|++++|+..+.+...+.+... .++.++.+|++|.+++.++++ .+|+
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~--~~Dv 191 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR-----FKVNVTAAETADDASRAEAVK--GAHF 191 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-----HTCCCEEEECCSHHHHHHHTT--TCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEecCCCHHHHHHHHH--hCCE
Confidence 478999999999999999999999999999999866655554444321 135667889999999999998 5899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|||+|+..
T Consensus 192 lVn~ag~g 199 (287)
T 1lu9_A 192 VFTAGAIG 199 (287)
T ss_dssp EEECCCTT
T ss_pred EEECCCcc
Confidence 99999853
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=94.29 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=77.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC---CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG---YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|++|+|+|| |++|+.+++.|++.| .+|++.+|+..+.+...+.+.... +.++..+.+|+.|.+++.+++++.+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~---~~~~~~~~~D~~d~~~l~~~l~~~~ 76 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG---YGEIDITTVDADSIEELVALINEVK 76 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT---CCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc---CCceEEEEecCCCHHHHHHHHHhhC
Confidence 478999998 999999999999998 389999998777665555544321 2367889999999999999998545
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEE
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVF 126 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~ 126 (347)
+|+|||++++.. ...++++|.+.++ +++-
T Consensus 77 ~DvVin~ag~~~------------------~~~v~~a~l~~g~-~vvD 105 (405)
T 4ina_A 77 PQIVLNIALPYQ------------------DLTIMEACLRTGV-PYLD 105 (405)
T ss_dssp CSEEEECSCGGG------------------HHHHHHHHHHHTC-CEEE
T ss_pred CCEEEECCCccc------------------ChHHHHHHHHhCC-CEEE
Confidence 899999997531 1256777877776 4443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-08 Score=77.45 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=70.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|++|+|+|+ |.+|+.+++.|.++|++|+++++++...+... . .+..++.+|.++++.+.++--. ++|+
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~----~------~~~~~~~gd~~~~~~l~~~~~~-~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLE----D------EGFDAVIADPTDESFYRSLDLE-GVSA 73 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----H------TTCEEEECCTTCHHHHHHSCCT-TCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH----H------CCCcEEECCCCCHHHHHhCCcc-cCCE
Confidence 468999996 99999999999999999999998755433222 1 2567889999999988876322 6899
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
||.+.+. .+.|+ .++..+++.+..++|...+
T Consensus 74 vi~~~~~-------------~~~n~----~~~~~a~~~~~~~iia~~~ 104 (141)
T 3llv_A 74 VLITGSD-------------DEFNL----KILKALRSVSDVYAIVRVS 104 (141)
T ss_dssp EEECCSC-------------HHHHH----HHHHHHHHHCCCCEEEEES
T ss_pred EEEecCC-------------HHHHH----HHHHHHHHhCCceEEEEEc
Confidence 9988651 12233 4555666666556655443
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-08 Score=87.36 Aligned_cols=170 Identities=17% Similarity=0.097 Sum_probs=107.2
Q ss_pred ceEEEEcCCCcccHHHHHHHH-hCCCeEEEEeCCCchhH------------HHHHHHHHhhccCCCCeEEEecCCCCHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASE------------IAVAKVKELAGYQGNNMTFHKLDLRDKAA 69 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~-~~g~~v~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (347)
|++|||||+..+|.+.+..|+ +.|..|+++.+.....+ ...+.+.+. +.+...+.+|+++.+.
T Consensus 51 K~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~----G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 51 KNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE----GLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH----TCCEEEEESCTTSHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc----CCCceeEeCCCCCHHH
Confidence 789999999999999999998 67999998887654321 112223332 5578899999999999
Q ss_pred HHHHHccC-----CCcEEEEccccccCCc--------cc-----c--------Ccch---------hhhhhhhHHH----
Q 040584 70 LEVVFAGT-----KFDAVIHFAGLKAVGE--------SV-----Q--------KPLP---------YFDNNLTGTI---- 110 (347)
Q Consensus 70 ~~~~~~~~-----~~d~vih~a~~~~~~~--------~~-----~--------~~~~---------~~~~nv~~~~---- 110 (347)
++++++.. ++|+|||++|...... +. + .... .-+.++.++.
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 88887643 7999999999653110 00 0 0000 0001122222
Q ss_pred -----HHHHHHHHcCC----CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeec
Q 040584 111 -----TLLEVMAAHGC----KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181 (347)
Q Consensus 111 -----~l~~~~~~~~~----~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~ 181 (347)
.++.+....++ .++|..|+.+.-- ..|.-....+|.+|..+|..++.++.+..+..+.+.-+
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse~---------t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v~ 277 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPEA---------TQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSVN 277 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG---------GHHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCcce---------eecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 23444444332 3777777644210 00111224689999999999999998886666666555
Q ss_pred cccc
Q 040584 182 FNPV 185 (347)
Q Consensus 182 ~~v~ 185 (347)
+.+-
T Consensus 278 ~a~v 281 (401)
T 4ggo_A 278 KGLV 281 (401)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 5443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.5e-09 Score=80.18 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=71.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d 80 (347)
+++|+|+|+ |.+|+.+++.|.+.|++|++++|++...+ .+. ......+.+|..+.+.+.++ +. ++|
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~----~~~------~~~~~~~~~d~~~~~~l~~~~~~--~~d 72 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVN----AYA------SYATHAVIANATEENELLSLGIR--NFE 72 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHH----TTT------TTCSEEEECCTTCHHHHHTTTGG--GCS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHH------HhCCEEEEeCCCCHHHHHhcCCC--CCC
Confidence 357999997 99999999999999999999988643321 111 12346678999998877765 55 599
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
+||++++.. .+.|. .++..+++.+.+++|..++..
T Consensus 73 ~vi~~~~~~------------~~~~~----~~~~~~~~~~~~~ii~~~~~~ 107 (144)
T 2hmt_A 73 YVIVAIGAN------------IQAST----LTTLLLKELDIPNIWVKAQNY 107 (144)
T ss_dssp EEEECCCSC------------HHHHH----HHHHHHHHTTCSEEEEECCSH
T ss_pred EEEECCCCc------------hHHHH----HHHHHHHHcCCCeEEEEeCCH
Confidence 999998631 11232 456677777777777666543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=73.28 Aligned_cols=97 Identities=18% Similarity=0.137 Sum_probs=68.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d~ 81 (347)
|+|+|+|+ |++|+.+++.|.+.|++|++++|++...+. +... .++..+.+|..+.+.+.+. ++ ++|+
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~----~~~~-----~~~~~~~~d~~~~~~l~~~~~~--~~d~ 72 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKK----ASAE-----IDALVINGDCTKIKTLEDAGIE--DADM 72 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHH-----CSSEEEESCTTSHHHHHHTTTT--TCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH----HHHh-----cCcEEEEcCCCCHHHHHHcCcc--cCCE
Confidence 78999996 999999999999999999999886543322 2111 1456778899888877655 44 6899
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEec
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSS 128 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S 128 (347)
||++.+.. ..|. .+.+.++..+.+++|..+
T Consensus 73 vi~~~~~~-------------~~~~----~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 73 YIAVTGKE-------------EVNL----MSSLLAKSYGINKTIARI 102 (140)
T ss_dssp EEECCSCH-------------HHHH----HHHHHHHHTTCCCEEEEC
T ss_pred EEEeeCCc-------------hHHH----HHHHHHHHcCCCEEEEEe
Confidence 99996421 1222 455667777766777544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-07 Score=86.65 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=72.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|||+|+|| |++|+.+++.|.+ .++|.+.+++....+. + ...+..+..|+.|.+++.++++ ++|+
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~----~-------~~~~~~~~~d~~d~~~l~~~~~--~~Dv 80 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEK----V-------KEFATPLKVDASNFDKLVEVMK--EFEL 80 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHH----H-------TTTSEEEECCTTCHHHHHHHHT--TCSE
T ss_pred ccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHH----H-------hccCCcEEEecCCHHHHHHHHh--CCCE
Confidence 478999998 9999999998865 5899998887544332 1 2356778899999999999998 5899
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEec
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSS 128 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S 128 (347)
||+++++.. -..++++|.+.|+ ++|=+|
T Consensus 81 Vi~~~p~~~------------------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 81 VIGALPGFL------------------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp EEECCCGGG------------------HHHHHHHHHHHTC-EEEECC
T ss_pred EEEecCCcc------------------cchHHHHHHhcCc-ceEeee
Confidence 999986431 1257889998887 777655
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-08 Score=92.12 Aligned_cols=106 Identities=22% Similarity=0.202 Sum_probs=74.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+| +|++|+++++.|++.|++|++++|+..+..... .. -.++..+.+|+.|.+++.++++ ++|+
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la----~~----~~~~~~~~~Dv~d~~~l~~~l~--~~Dv 71 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLS----AG----VQHSTPISLDVNDDAALDAEVA--KHDL 71 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTT----TT----CTTEEEEECCTTCHHHHHHHHT--TSSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHH----Hh----cCCceEEEeecCCHHHHHHHHc--CCcE
Confidence 47899998 899999999999999999999998754332211 10 1246678899999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhh--hh-------hhHHHHHHHHHHHcCC
Q 040584 82 VIHFAGLKAVGESVQKPLPYFD--NN-------LTGTITLLEVMAAHGC 121 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~--~n-------v~~~~~l~~~~~~~~~ 121 (347)
|||+++...... .....++ .| ...+..++++|++.|+
T Consensus 72 VIn~a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 72 VISLIPYTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp EEECCC--CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred EEECCccccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence 999998643211 0011111 11 2356788999999887
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=67.46 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=58.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~ 79 (347)
.++|+|+|+ |.+|+.+++.|.+.|++|+++++++. ..+...+.. ..++..+.+|.+|.+.+.++ ++ ++
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-------~~~~~~i~gd~~~~~~l~~a~i~--~a 72 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-------GDNADVIPGDSNDSSVLKKAGID--RC 72 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-------CTTCEEEESCTTSHHHHHHHTTT--TC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-------cCCCeEEEcCCCCHHHHHHcChh--hC
Confidence 368999995 99999999999999999999998642 221111111 23678899999999998887 66 68
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|.||-+.+
T Consensus 73 d~vi~~~~ 80 (153)
T 1id1_A 73 RAILALSD 80 (153)
T ss_dssp SEEEECSS
T ss_pred CEEEEecC
Confidence 99998864
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-07 Score=80.71 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=78.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+||+|++|..++..|++.| .+|.++++.+ .+.....+.+.. ....+.... ..++++++++ ++|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~--~~~~l~~~~----~t~d~~~a~~--~aD 70 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIE--TRATVKGYL----GPEQLPDCLK--GCD 70 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSS--SSCEEEEEE----SGGGHHHHHT--TCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccC--cCceEEEec----CCCCHHHHhC--CCC
Confidence 589999999999999999999988 7999999876 222222222210 011111111 1245677787 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||++||..... .....+.+..|+..++.+++.+.+.... ++|++|.
T Consensus 71 vVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 71 VVVIPAGVPRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EEEECCSCCCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEECCCcCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 999999975421 2233567788999999999998887543 7777654
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-07 Score=84.34 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=77.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--e-----EEEEeCCCc--hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--K-----TVVVDNLDN--ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~-----v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
+||+||||+|++|++++..|+..|. + +.++++... ..+-..-.+.+.. .+-...+. ......+.
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~---~~~~~~~~----~~~~~~~~ 76 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA---LPLLKDVI----ATDKEEIA 76 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC---CTTEEEEE----EESCHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhh---hcccCCEE----EcCCcHHH
Confidence 6899999999999999999998875 5 888877532 2222222222210 11111111 12234556
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC--eEEEecc
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK--NLVFSSS 129 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~--~iv~~SS 129 (347)
++ ++|+|||+||.... ......+.++.|+..++.+++++++.+.+ +++.+|.
T Consensus 77 ~~--daDvVvitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 77 FK--DLDVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp TT--TCSEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hC--CCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 66 69999999986532 22355678899999999999999998754 5777775
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.6e-07 Score=82.77 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=74.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+|+ |++|+.+++.|++. |++|++++|+..+.....+. .++..+.+|+.|.+++.++++ ++|
T Consensus 23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~---------~~~~~~~~D~~d~~~l~~~l~--~~D 90 (467)
T 2axq_A 23 GKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP---------SGSKAISLDVTDDSALDKVLA--DND 90 (467)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG---------GTCEEEECCTTCHHHHHHHHH--TSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh---------cCCcEEEEecCCHHHHHHHHc--CCC
Confidence 478999997 99999999999998 78999999875544322211 145677899999999999988 699
Q ss_pred EEEEccccccCCccc----cCcchhhhhhh--hHHHHHHHHHHHcCC
Q 040584 81 AVIHFAGLKAVGESV----QKPLPYFDNNL--TGTITLLEVMAAHGC 121 (347)
Q Consensus 81 ~vih~a~~~~~~~~~----~~~~~~~~~nv--~~~~~l~~~~~~~~~ 121 (347)
+|||+++........ ..-..++..+. ..+..+++.+++.|+
T Consensus 91 vVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 91 VVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI 137 (467)
T ss_dssp EEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred EEEECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence 999999864211000 00011122221 234677788888776
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-07 Score=76.40 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=54.9
Q ss_pred CceEEEEcC----------------CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGG----------------VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGa----------------tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+|+|+|||| +|.+|.+++++|+++|++|+++.|+...... ...++..+ |+.
T Consensus 3 gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~-----------~~~~~~~~--~v~ 69 (232)
T 2gk4_A 3 AMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE-----------PHPNLSIR--EIT 69 (232)
T ss_dssp CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC-----------CCTTEEEE--ECC
T ss_pred CCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-----------CCCCeEEE--EHh
Confidence 689999999 9999999999999999999999986532110 01244444 455
Q ss_pred CHHHHHHHHcc-C-CCcEEEEccccccC
Q 040584 66 DKAALEVVFAG-T-KFDAVIHFAGLKAV 91 (347)
Q Consensus 66 d~~~~~~~~~~-~-~~d~vih~a~~~~~ 91 (347)
..+++...+.. + ++|++||+||...+
T Consensus 70 s~~em~~~v~~~~~~~Dili~aAAvsD~ 97 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDYQVLIHSMAVSDY 97 (232)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECSBCCSE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCccccc
Confidence 55555444321 1 59999999997654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=68.42 Aligned_cols=100 Identities=20% Similarity=0.130 Sum_probs=69.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d 80 (347)
+++|+|+|+ |.+|+.+++.|.+.|++|++++|++...+.... ..+...+.+|..+.+.+.++ +. ++|
T Consensus 19 ~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---------~~g~~~~~~d~~~~~~l~~~~~~--~ad 86 (155)
T 2g1u_A 19 SKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---------EFSGFTVVGDAAEFETLKECGME--KAD 86 (155)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---------TCCSEEEESCTTSHHHHHTTTGG--GCS
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---------cCCCcEEEecCCCHHHHHHcCcc--cCC
Confidence 478999995 999999999999999999999987665432110 12456777898888777665 55 589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHH-cCCCeEEEeccc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA-HGCKNLVFSSSA 130 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~-~~~~~iv~~SS~ 130 (347)
+||.+.+.. ..| ..++..++. .+..++|...+.
T Consensus 87 ~Vi~~~~~~-------------~~~----~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 87 MVFAFTNDD-------------STN----FFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp EEEECSSCH-------------HHH----HHHHHHHHHTSCCSEEEEECSS
T ss_pred EEEEEeCCc-------------HHH----HHHHHHHHHHCCCCeEEEEECC
Confidence 999997521 111 245556666 555566655543
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6e-07 Score=74.98 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=55.2
Q ss_pred CceEEEEcC----------------CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGG----------------VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGa----------------tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+|+|+|||| +|.+|.+++++|+++|++|+++.++..... ..++. ..|+.
T Consensus 8 gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~-------------~~g~~--~~dv~ 72 (226)
T 1u7z_A 8 HLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT-------------PPFVK--RVDVM 72 (226)
T ss_dssp TCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC-------------CTTEE--EEECC
T ss_pred CCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccccc-------------CCCCe--EEccC
Confidence 589999999 799999999999999999999877542110 11333 46788
Q ss_pred CHHHHHHHHcc-C-CCcEEEEccccccC
Q 040584 66 DKAALEVVFAG-T-KFDAVIHFAGLKAV 91 (347)
Q Consensus 66 d~~~~~~~~~~-~-~~d~vih~a~~~~~ 91 (347)
+.+++.+.+.+ + ++|++||+||...+
T Consensus 73 ~~~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 73 TALEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred cHHHHHHHHHHhcCCCCEEEECCcccCC
Confidence 87766554421 1 59999999997543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.8e-06 Score=69.26 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=58.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d~ 81 (347)
|+|+|+|+ |.+|+++++.|.++|++|+++++++...+...+. .+...+.+|.++.+.+.++ ++ ++|+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---------~~~~~i~gd~~~~~~l~~a~i~--~ad~ 68 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---------LKATIIHGDGSHKEILRDAEVS--KNDV 68 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---------SSSEEEESCTTSHHHHHHHTCC--TTCE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---------cCCeEEEcCCCCHHHHHhcCcc--cCCE
Confidence 58999995 9999999999999999999999875544322211 2567899999999998887 44 6899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||-+.+
T Consensus 69 vi~~~~ 74 (218)
T 3l4b_C 69 VVILTP 74 (218)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 997753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-06 Score=68.31 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=57.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH--HccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV--FAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~--~~~~~ 78 (347)
+++|+|+| .|.+|..+++.|.+. |++|+++++++.+... +.. .++..+.+|..+.+.+.++ ++ +
T Consensus 39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~----~~~------~g~~~~~gd~~~~~~l~~~~~~~--~ 105 (183)
T 3c85_A 39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQ----HRS------EGRNVISGDATDPDFWERILDTG--H 105 (183)
T ss_dssp TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH----HHH------TTCCEEECCTTCHHHHHTBCSCC--C
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHH----HHH------CCCCEEEcCCCCHHHHHhccCCC--C
Confidence 46899999 699999999999999 9999999987654332 221 2566788999998887776 55 6
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|+||.+.+
T Consensus 106 ad~vi~~~~ 114 (183)
T 3c85_A 106 VKLVLLAMP 114 (183)
T ss_dssp CCEEEECCS
T ss_pred CCEEEEeCC
Confidence 899998864
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=66.01 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=59.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKF 79 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~ 79 (347)
|+++|+|+| .|.+|+.+++.|.+.|++|+++++++...+... . .++..+.+|.++.+.+.++ ++ ++
T Consensus 6 ~~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~----~------~g~~~i~gd~~~~~~l~~a~i~--~a 72 (140)
T 3fwz_A 6 ICNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELR----E------RGVRAVLGNAANEEIMQLAHLE--CA 72 (140)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----H------TTCEEEESCTTSHHHHHHTTGG--GC
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----H------cCCCEEECCCCCHHHHHhcCcc--cC
Confidence 567899999 599999999999999999999998765443222 1 2677899999999988876 34 58
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|+||-+.+
T Consensus 73 d~vi~~~~ 80 (140)
T 3fwz_A 73 KWLILTIP 80 (140)
T ss_dssp SEEEECCS
T ss_pred CEEEEECC
Confidence 99998864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.3e-06 Score=72.81 Aligned_cols=116 Identities=12% Similarity=0.176 Sum_probs=76.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|++|++|+.++..|+.+| .+|.+++....+.+.....+.+.. ....++.+ ..++.++++ ++
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~-~~~~~i~~-------t~d~~~al~--dA 77 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG-FEGLNLTF-------TSDIKEALT--DA 77 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC-CTTCCCEE-------ESCHHHHHT--TE
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc-CCCCceEE-------cCCHHHHhC--CC
Confidence 5799999999999999999999998 589999886554443232333321 11112221 223556677 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC--eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK--NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~--~iv~~SS 129 (347)
|+||.+||.... ......+.+..|+...+.+++.+.+.... .++.+|.
T Consensus 78 DvVvitaG~p~k--pG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 78 KYIVSSGGAPRK--EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp EEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CEEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 999999996432 12334567888999999999999887543 2556654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=71.19 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEe-cCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK-LDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~~ 78 (347)
|+|||.|+|| |.+|..++..|+..|+ +|.+++++..+.+.....+.+..........+.. .| + +.++ +
T Consensus 1 M~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d------~-~a~~--~ 70 (309)
T 1ur5_A 1 MRKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN------Y-ADTA--N 70 (309)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC------G-GGGT--T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCC------H-HHHC--C
Confidence 7899999998 9999999999999997 9888888776554333333221100011222222 22 2 3455 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
+|+||.++|..... .....+....|+.....+++.+.+.....+|.+.|
T Consensus 71 aD~Vi~a~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 71 SDVIVVTSGAPRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 99999999865321 11223456778888888999888876444554444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.4e-05 Score=69.39 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=78.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.+||.|+|+ |.+|+.++..|+..|+ +|.++++...+.+.....+.+..+.....+.....| . +.++ ++
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~----~a~~--~a 74 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y----EDCK--DA 74 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G----GGGT--TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H----HHhC--CC
Confidence 369999995 9999999999999987 899998865554433333433222111234443333 2 3455 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||.+||.... ......+.+..|+.....+++.+.+.... .++.+|.
T Consensus 75 DvVvi~ag~p~k--pG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 75 DIVCICAGANQK--PGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CEEEEecccCCC--CCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 999999996432 12334567888999999999999887533 5666654
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-05 Score=66.52 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=68.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d 80 (347)
.++|+|+|+ |.+|+.+++.|.+.|+ |+++++++...+. +. .++.++.+|.+|.+.+.++ ++ ++|
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~----~~-------~~~~~i~gd~~~~~~l~~a~i~--~ad 73 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKV----LR-------SGANFVHGDPTRVSDLEKANVR--GAR 73 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHH----HH-------TTCEEEESCTTCHHHHHHTTCT--TCS
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHH----Hh-------cCCeEEEcCCCCHHHHHhcCcc--hhc
Confidence 478999996 9999999999999999 9999876554322 11 2578899999999998877 55 689
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
.||-+.+.. ..|+ .++..+++.+.+ ++|.-.+
T Consensus 74 ~vi~~~~~d-------------~~n~----~~~~~a~~~~~~~~iia~~~ 106 (234)
T 2aef_A 74 AVIVDLESD-------------SETI----HCILGIRKIDESVRIIAEAE 106 (234)
T ss_dssp EEEECCSCH-------------HHHH----HHHHHHHHHCSSSEEEEECS
T ss_pred EEEEcCCCc-------------HHHH----HHHHHHHHHCCCCeEEEEEC
Confidence 999875310 2233 455666776654 6654433
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=1e-05 Score=66.54 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=50.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH---HHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE---VVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|++++|++.+.+. +.++ +... ..|..+.+..+ +.....+
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~----~~~~------g~~~-~~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM----LSRL------GVEY-VGDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH----HHTT------CCSE-EEETTCSTHHHHHHHHTTTCC
T ss_pred CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHc------CCCE-EeeCCcHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999886443322 2221 1111 23555543333 3332226
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|+||+++|
T Consensus 108 ~D~vi~~~g 116 (198)
T 1pqw_A 108 VDVVLNSLA 116 (198)
T ss_dssp EEEEEECCC
T ss_pred CeEEEECCc
Confidence 999999986
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1e-05 Score=67.37 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=50.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+|+||+|++|+.+++.|++.|++|++++|++.+.+...+.+.... . ..|+. .+++.++++ ++|+|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~------~~~~~-~~~~~~~~~--~~D~V 68 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA---G------DASIT-GMKNEDAAE--ACDIA 68 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHH---S------SCCEE-EEEHHHHHH--HCSEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccc---c------cCCCC-hhhHHHHHh--cCCEE
Confidence 589999999999999999999999999999987655443332221110 0 01121 123555666 48999
Q ss_pred EEccc
Q 040584 83 IHFAG 87 (347)
Q Consensus 83 ih~a~ 87 (347)
|++..
T Consensus 69 i~~~~ 73 (212)
T 1jay_A 69 VLTIP 73 (212)
T ss_dssp EECSC
T ss_pred EEeCC
Confidence 99974
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=5.7e-05 Score=66.88 Aligned_cols=115 Identities=14% Similarity=0.245 Sum_probs=67.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|+ |.+|+.++..|+..|. ++.++++...+.+.....+.+.... ...+.....| . +.++ ++
T Consensus 9 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-~~~~~i~~~~---~----~a~~--~a 77 (326)
T 3vku_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPF-TSPKKIYSAE---Y----SDAK--DA 77 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGG-SCCCEEEECC---G----GGGT--TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhh-cCCcEEEECc---H----HHhc--CC
Confidence 379999996 9999999999999887 8999988655544333333332211 1233433332 2 3455 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||++||.... ......+.++.|+.-.+.+.+.+.+.... .++.+|.
T Consensus 78 DiVvi~ag~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 78 DLVVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp SEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred CEEEECCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 999999996432 12334567888999999999999887533 5666554
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00019 Score=63.99 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=74.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhcc--CCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGY--QGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|||.|+|| |.+|..++..|+..|+ +|.+++++....+.....+.+.... ...++.. . .++.++++ ++
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t------~d~~ea~~--~a 79 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E------YSYEAALT--GA 79 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E------CSHHHHHT--TC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e------CCHHHHhC--CC
Confidence 68999997 9999999999999998 9999999877655433322221110 0112221 1 23455676 69
Q ss_pred cEEEEccccccCCcccc---CcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQ---KPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~---~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
|+||-++|.+.....+. ...+....|+...+.+++.+.+....-++.+.|
T Consensus 80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 99999998643211100 234556678888888888888774333333333
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00013 Score=62.20 Aligned_cols=106 Identities=20% Similarity=0.179 Sum_probs=71.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEec
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
++|+|+| .|.+|+.+++.|.+.|. +++++++.. .+.+...+.+..+.+ .-.+..+..
T Consensus 32 ~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~~~v~~~~~ 108 (249)
T 1jw9_B 32 SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINP--HIAITPVNA 108 (249)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT--TSEEEEECS
T ss_pred CeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCC--CcEEEEEec
Confidence 6899999 68899999999999997 788888876 455555555555422 123455555
Q ss_pred CCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccc
Q 040584 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATA 132 (347)
Q Consensus 63 Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~ 132 (347)
++. .+.+.+++. ++|+||.+.. |...-..+.++|++.++ .+|+.+....
T Consensus 109 ~~~-~~~~~~~~~--~~DvVi~~~d-----------------~~~~~~~l~~~~~~~~~-p~i~~~~~g~ 157 (249)
T 1jw9_B 109 LLD-DAELAALIA--EHDLVLDCTD-----------------NVAVRNQLNAGCFAAKV-PLVSGAAIRM 157 (249)
T ss_dssp CCC-HHHHHHHHH--TSSEEEECCS-----------------SHHHHHHHHHHHHHHTC-CEEEEEEEBT
T ss_pred cCC-HhHHHHHHh--CCCEEEEeCC-----------------CHHHHHHHHHHHHHcCC-CEEEeeeccc
Confidence 565 355677777 5899999863 11222356677777775 5666655443
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=8.4e-05 Score=65.47 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=58.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCC---CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNL---DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+++++|+|+ |.+|+.++..|.+.|. +|+++.|+ ..+.+.+.+.+.... .......++.+.+++.+.+.
T Consensus 154 gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~-----~~~~~~~~~~~~~~l~~~l~-- 225 (315)
T 3tnl_A 154 GKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKT-----DCKAQLFDIEDHEQLRKEIA-- 225 (315)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS-----SCEEEEEETTCHHHHHHHHH--
T ss_pred CCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhc-----CCceEEeccchHHHHHhhhc--
Confidence 478999996 8999999999999998 89999998 444444444443321 23334456677777888887
Q ss_pred CCcEEEEccccc
Q 040584 78 KFDAVIHFAGLK 89 (347)
Q Consensus 78 ~~d~vih~a~~~ 89 (347)
.+|+||++....
T Consensus 226 ~aDiIINaTp~G 237 (315)
T 3tnl_A 226 ESVIFTNATGVG 237 (315)
T ss_dssp TCSEEEECSSTT
T ss_pred CCCEEEECccCC
Confidence 589999998654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00019 Score=63.57 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=77.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
++||.|+| +|.+|..++..|+..|. +|.++++.+.+.+.....+.+..............+ |. ++++ ++|
T Consensus 5 ~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~--d~----~a~~--~aD 75 (321)
T 3p7m_A 5 RKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTN--DY----KDLE--NSD 75 (321)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEES--CG----GGGT--TCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcC--CH----HHHC--CCC
Confidence 37999999 59999999999999988 999999887765433333332211001122222111 22 3566 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||.+||.... ......+.+..|+...+.+++.+.+.... .++.+|.
T Consensus 76 vVIi~ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 76 VVIVTAGVPRK--PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEEcCCcCCC--CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999986432 12234567788999999999998887533 6666653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=8.6e-05 Score=68.19 Aligned_cols=73 Identities=26% Similarity=0.273 Sum_probs=58.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d 80 (347)
+++|+|+| .|.+|+.+++.|.+.|++|+++++++...... .. .++..+.+|.++.+.+.++ ++ ++|
T Consensus 4 ~~~viIiG-~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~----~~------~g~~vi~GDat~~~~L~~agi~--~A~ 70 (413)
T 3l9w_A 4 GMRVIIAG-FGRFGQITGRLLLSSGVKMVVLDHDPDHIETL----RK------FGMKVFYGDATRMDLLESAGAA--KAE 70 (413)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH----HH------TTCCCEESCTTCHHHHHHTTTT--TCS
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH----Hh------CCCeEEEcCCCCHHHHHhcCCC--ccC
Confidence 36899999 59999999999999999999999876544332 22 2567899999999998887 55 689
Q ss_pred EEEEccc
Q 040584 81 AVIHFAG 87 (347)
Q Consensus 81 ~vih~a~ 87 (347)
+||-+.+
T Consensus 71 ~viv~~~ 77 (413)
T 3l9w_A 71 VLINAID 77 (413)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9998864
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00015 Score=63.39 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=76.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|+ |.+|..++..|++.|+ +|.++++.+...+...-.+.+..........+... .| .++++ ++|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~--~aD 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLK--GSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhC--CCC
Confidence 68999998 9999999999999998 99999987655432222222221111112222222 12 34566 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||.+||.... ......+.+..|+...+.+.+.+.+.... .++.+|.
T Consensus 72 iVViaag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 99999986532 12234567888999999999998887533 6666664
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.7e-05 Score=68.69 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=28.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-CCCeEEE-EeCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-GGYKTVV-VDNLD 36 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~g~~v~~-~~r~~ 36 (347)
|+|.|+|++|.+|+.+++.+++ .|+++.+ +++++
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~ 41 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG 41 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 6899999999999999999875 5888874 45443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=63.03 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=75.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|+ |.+|+.++..|++.|. +|.+++++..+.+.....+.+..............| + .+.++ ++|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~--~aD 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTE--DSD 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhC--CCC
Confidence 68999996 9999999999999886 899999887765433333332211001122333222 1 23455 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||.+||.... ......+.++.|+...+.+.+.+.+.... .++.+|.
T Consensus 72 vVii~ag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 72 VCIITAGLPRS--PGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EEEECCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 99999996532 12344677888999999999998887533 5666654
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0003 Score=62.37 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=78.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.+||.|+|+ |.+|..++..|+.+|. ++.++++...+.+...-.+.+.... ......+.. .|.+ .++ ++
T Consensus 19 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~-~~~~~i~~~--~d~~----~~~--~a 88 (331)
T 4aj2_A 19 QNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLF-LKTPKIVSS--KDYS----VTA--NS 88 (331)
T ss_dssp SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGG-CSCCEEEEC--SSGG----GGT--TE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhc-cCCCeEEEc--CCHH----HhC--CC
Confidence 379999997 9999999999999987 8999988755444433334432111 111222222 1332 355 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||.+||.... ......+.++.|+.-.+.+.+.+.+.... .++.+|.
T Consensus 89 DiVvi~aG~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 89 KLVIITAGARQQ--EGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp EEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CEEEEccCCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999997532 22345678899999999999998887533 6666664
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00021 Score=63.04 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=74.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC--chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD--NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++|.|+|+ |.+|..++..|+..|+ +|+++++++ ...+.....+.+..............+ |. +.++ ++
T Consensus 9 ~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d~----~a~~--~a 79 (315)
T 3tl2_A 9 KKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--DY----ADTA--DS 79 (315)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--CG----GGGT--TC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--CH----HHhC--CC
Confidence 58999996 9999999999999999 999999873 232222222221111001111222111 22 3455 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||.+||..... .....+.++.|+...+.+.+.+.+.... .++.+|.
T Consensus 80 DvVIiaag~p~kp--g~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 80 DVVVITAGIARKP--GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 9999999965321 2334667888999999999998887533 6666664
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.3e-05 Score=69.31 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=56.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.++|+|+|+ |.+|+.+++.|...|++|++++|++.+.+...+. . +.. +.+|..+.+++.+++. ++|+
T Consensus 166 ~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~---~----g~~---~~~~~~~~~~l~~~~~--~~Dv 232 (369)
T 2eez_A 166 PASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV---F----GGR---VITLTATEANIKKSVQ--HADL 232 (369)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---T----TTS---EEEEECCHHHHHHHHH--HCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh---c----Cce---EEEecCCHHHHHHHHh--CCCE
Confidence 378999998 9999999999999999999999876544322211 1 111 3456677888888887 5999
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
||++++..
T Consensus 233 Vi~~~g~~ 240 (369)
T 2eez_A 233 LIGAVLVP 240 (369)
T ss_dssp EEECCC--
T ss_pred EEECCCCC
Confidence 99999853
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.72 E-value=7.8e-05 Score=66.59 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=52.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|++++|++.+.+.. .++ +.. . ..|..+.+ .+.+.....+
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~----~~~----g~~--~-~~d~~~~~~~~~i~~~~~~~~ 214 (333)
T 1wly_A 146 GDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETA----RKL----GCH--H-TINYSTQDFAEVVREITGGKG 214 (333)
T ss_dssp TCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHH----TCS--E-EEETTTSCHHHHHHHHHTTCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHc----CCC--E-EEECCCHHHHHHHHHHhCCCC
Confidence 36899999999999999999999999999999875443322 222 111 1 23554433 3333433336
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 215 ~d~vi~~~g~ 224 (333)
T 1wly_A 215 VDVVYDSIGK 224 (333)
T ss_dssp EEEEEECSCT
T ss_pred CeEEEECCcH
Confidence 9999999974
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00041 Score=61.43 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=76.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEE-ecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH-KLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|| |.+|..++..|+..|+ +|.++++...+.+.....+.+..........+. ..| . ++++ ++
T Consensus 7 ~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d---~----~a~~--~a 76 (324)
T 3gvi_A 7 RNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND---Y----AAIE--GA 76 (324)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS---G----GGGT--TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC---H----HHHC--CC
Confidence 369999997 9999999999999998 999999988765433333332211001122222 122 2 3566 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||.+||.... ......+.+..|+...+.+++.+.+.... .++.+|.
T Consensus 77 DiVIiaag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 77 DVVIVTAGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp SEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEccCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 999999986432 12234567788999999999998887533 6666664
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=65.94 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=51.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|+++++++.+.+.. .++ + ... ..|..+.+ .+.++....+
T Consensus 167 g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~----~~~----g--a~~-~~d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 167 GDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA----KAL----G--ADE-TVNYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp TCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHH----T--CSE-EEETTSTTHHHHHHHHTTTTC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----Hhc----C--CCE-EEcCCcccHHHHHHHHhCCCC
Confidence 46899999999999999999999999999998875544332 222 1 111 13555432 3333333236
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|+||+++|
T Consensus 236 ~d~vi~~~g 244 (343)
T 2eih_A 236 ADKVVDHTG 244 (343)
T ss_dssp EEEEEESSC
T ss_pred ceEEEECCC
Confidence 999999998
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=6.7e-05 Score=66.82 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=51.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHH---HHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAA---LEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|++++|++.+.+.. .++ +.. . ..|..+.+. +.+.....+
T Consensus 141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~----~~~----g~~--~-~~~~~~~~~~~~~~~~~~~~~ 209 (327)
T 1qor_A 141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA----LKA----GAW--Q-VINYREEDLVERLKEITGGKK 209 (327)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----HHH----TCS--E-EEETTTSCHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHc----CCC--E-EEECCCccHHHHHHHHhCCCC
Confidence 46899999999999999999999999999998875443322 222 111 1 235544333 333332336
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|+||+++|
T Consensus 210 ~D~vi~~~g 218 (327)
T 1qor_A 210 VRVVYDSVG 218 (327)
T ss_dssp EEEEEECSC
T ss_pred ceEEEECCc
Confidence 999999998
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00061 Score=60.24 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=77.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEE-ecCCCCHHHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH-KLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~ 78 (347)
.+||.|+|+ |.+|..++..|+..|. +|.++++...+.+.....+.+.... ....... ..|..+ ++ +
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~-~~~~~i~~t~d~~~-------~~--d 89 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLF-LHTAKIVSGKDYSV-------SA--G 89 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGG-SCCSEEEEESSSCS-------CS--S
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhc-ccCCeEEEcCCHHH-------hC--C
Confidence 378999998 9999999999999986 8999988665544433333332111 1112222 234322 44 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+|+||-+||.... ......+.+..|+.-.+.+++.+.+.... .++.+|.
T Consensus 90 aDiVIitaG~p~k--pG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 90 SKLVVITAGARQQ--EGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp CSEEEECCSCCCC--SSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCEEEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 9999999997542 22344567888999999999988887533 5666664
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.6e-05 Score=67.97 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=52.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHH----HHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAAL----EVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~----~~~~~~~ 77 (347)
+++|+|+||+|.+|..+++.+...|++|+++.|++.+.+.. .++ +... ..|..+.+++ .++...
T Consensus 170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~----~~~------g~~~-~~d~~~~~~~~~~~~~~~~~- 237 (347)
T 2hcy_A 170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF----RSI------GGEV-FIDFTKEKDIVGAVLKATDG- 237 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH----HHT------TCCE-EEETTTCSCHHHHHHHHHTS-
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH----HHc------CCce-EEecCccHhHHHHHHHHhCC-
Confidence 46899999999999999999999999999999876654322 222 1121 2365533333 333334
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|+||+++|.
T Consensus 238 ~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 GAHGVINVSVS 248 (347)
T ss_dssp CEEEEEECSSC
T ss_pred CCCEEEECCCc
Confidence 69999999873
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00045 Score=61.14 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=73.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|| |.+|..++..|+.+| .+|.+++....+.+.....+.+.....+..+.+.. | + .++++ ++|
T Consensus 7 ~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~--~aD 76 (317)
T 3d0o_A 7 NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCH--DAD 76 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhC--CCC
Confidence 59999998 999999999999988 48999987654443322222222111112333332 2 2 33455 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||.+++..... .....+....|+.....+.+.+.+.... .+|.+|
T Consensus 77 vVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 77 LVVICAGAAQKP--GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp EEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999865321 2233456677888888899888887543 555543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00043 Score=60.30 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=76.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|| |.+|+.++..|+.++ -++.+++......+-..-.+.+-............. .|++ .++ +.|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~~----~~~--~aD 71 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----LLK--GSE 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCGG----GGT--TCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCHH----HhC--CCC
Confidence 78999995 999999999998876 478898876544433333333322111122223322 1232 355 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||-.||.... ......+.++.|..-.+.+.+.+.++... .++.+|.
T Consensus 72 vVvitAG~prk--pGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCC--SSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEEecCCCCC--CCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99999997542 22345678899999999999999887644 4555554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00085 Score=59.62 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhcc--CCCCeEEEecCCCCHHHHHHHHccC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGY--QGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|+++|.|+|| |.+|..++..|+..|+ +|++.+++....+.....+.+.... ...++.. ..| + ++++
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d------~-~al~-- 81 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENN------Y-EYLQ-- 81 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESC------G-GGGT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCC------H-HHHC--
Confidence 4579999997 9999999999999998 9999999877655432222221110 0112222 122 2 3455
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
++|+||-+++.+.. +. ....+....|+...+.+++.+.+.... .+|.+|.
T Consensus 82 ~aD~VI~avg~p~k-~g-~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 82 NSDVVIITAGVPRK-PN-MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp TCSEEEECCSCCCC-TT-CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCEEEEcCCCCCC-CC-CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 69999999985431 11 122345566888888888887776433 4454543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00017 Score=64.31 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=50.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc---cCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA---GTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~~ 78 (347)
+++|+|+||+|.||..+++.+...|++|+++++++.+.+. +.++ +.. ...|..+.+++.+.+. ..+
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~----~~~~------g~~-~~~d~~~~~~~~~~~~~~~~~~ 214 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY----LKQI------GFD-AAFNYKTVNSLEEALKKASPDG 214 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HHHT------TCS-EEEETTSCSCHHHHHHHHCTTC
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHhc------CCc-EEEecCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999999886544332 2222 111 1236555222332222 126
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|+||+++|
T Consensus 215 ~d~vi~~~g 223 (333)
T 1v3u_A 215 YDCYFDNVG 223 (333)
T ss_dssp EEEEEESSC
T ss_pred CeEEEECCC
Confidence 999999997
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00047 Score=60.99 Aligned_cols=114 Identities=14% Similarity=0.219 Sum_probs=72.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|| |.+|..++..|+..+. ++.++++...+.+.....+.+... ....+.+.. | + .++++ ++|
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~v~~-~--~----~~a~~--~aD 74 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTAPKKIYS-G--E----YSDCK--DAD 74 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSCCCEEEE-C--C----GGGGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHH-hcCCeEEEE-C--C----HHHhC--CCC
Confidence 68999998 9999999999999876 899998865554433333333221 112333332 2 2 23455 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||..++..... .....+.+..|+.....+++.+.+.... .+|.+|.
T Consensus 75 vVii~ag~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 75 LVVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp EEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 999999865321 1223456778999999999998887533 6666543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=65.62 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=52.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|++++|++.+.+.. .++ +.. ...|..+.+ .+.+.....+
T Consensus 163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~ 231 (354)
T 2j8z_A 163 GDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA----EKL----GAA---AGFNYKKEDFSEATLKFTKGAG 231 (354)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHH----TCS---EEEETTTSCHHHHHHHHTTTSC
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HHc----CCc---EEEecCChHHHHHHHHHhcCCC
Confidence 36899999999999999999999999999999875544332 222 111 123444433 3333333236
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 232 ~d~vi~~~G~ 241 (354)
T 2j8z_A 232 VNLILDCIGG 241 (354)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCc
Confidence 9999999984
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.59 E-value=2.3e-05 Score=70.24 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=58.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC------CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG------YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
|++|+|.||||++|+.|++.|++++ .+++.+.+.++..+......+.+.+. ..+.+ .|+ +.+ .+.
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~--~~~~~--~~~-~~~----~~~ 79 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPL--AHRVV--EPT-EAA----VLG 79 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGG--TTCBC--EEC-CHH----HHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccccccc--ceeee--ccC-CHH----Hhc
Confidence 4699999999999999999999987 36776653322111000000000000 01111 122 222 244
Q ss_pred cCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccc
Q 040584 76 GTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATA 132 (347)
Q Consensus 76 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~ 132 (347)
++|+||.+.+... +..+++.+ +.|+ ++|-+|+..-
T Consensus 80 --~~DvVf~alg~~~------------------s~~~~~~~-~~G~-~vIDlSa~~R 114 (352)
T 2nqt_A 80 --GHDAVFLALPHGH------------------SAVLAQQL-SPET-LIIDCGADFR 114 (352)
T ss_dssp --TCSEEEECCTTSC------------------CHHHHHHS-CTTS-EEEECSSTTT
T ss_pred --CCCEEEECCCCcc------------------hHHHHHHH-hCCC-EEEEECCCcc
Confidence 5999999987432 22466777 6675 7888998753
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00074 Score=59.69 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=72.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|+ |.+|..++..|+..|. +|++++++....+.....+.+........+.+.. | +. +.++ ++
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~----~al~--~a 75 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DY----DDCR--DA 75 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CG----GGTT--TC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cH----HHhC--CC
Confidence 369999998 9999999999988774 8999998754333322233322111111333332 2 22 3455 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
|+||.+++...... ....+.+..|......+++.+.+.... .++.+|
T Consensus 76 DvViia~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 76 DLVVICAGANQKPG--ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp SEEEECCSCCCCTT--TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CEEEEcCCCCCCCC--CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 99999998754322 223455677888888888888876433 455444
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00015 Score=65.18 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|++++|++.+.+. ..++ +... ..|..+.+ .+.+.....+
T Consensus 171 g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~~~~------ga~~-~~d~~~~~~~~~~~~~~~~~~ 239 (351)
T 1yb5_A 171 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI----VLQN------GAHE-VFNHREVNYIDKIKKYVGEKG 239 (351)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HHHT------TCSE-EEETTSTTHHHHHHHHHCTTC
T ss_pred cCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHH----HHHc------CCCE-EEeCCCchHHHHHHHHcCCCC
Confidence 4689999999999999999999999999999887554432 2222 1111 23554433 3333333336
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 240 ~D~vi~~~G~ 249 (351)
T 1yb5_A 240 IDIIIEMLAN 249 (351)
T ss_dssp EEEEEESCHH
T ss_pred cEEEEECCCh
Confidence 9999999973
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00033 Score=61.97 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=69.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|+ |.+|..++..|+..|. +|.+++....+.+.....+.+... ....+.+. . .+ .++++ ++|
T Consensus 8 ~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~-~--~~----~~a~~--~aD 76 (318)
T 1y6j_A 8 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLY-A--GD----YSDVK--DCD 76 (318)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC-----C----GGGGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHH-hcCCeEEE-E--CC----HHHhC--CCC
Confidence 68999997 9999999999999987 999999876655432333322110 11122222 1 12 23465 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEe
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFS 127 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~ 127 (347)
+||.+++.... ......+....|+.....+++.+.+.... .+|.+
T Consensus 77 vVii~~g~p~k--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 77 VIVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp EEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred EEEEcCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 99999986431 11223456778999999999998886543 45544
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0011 Score=59.16 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=73.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-------eEEEEeCCCchh--HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-------KTVVVDNLDNAS--EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-------~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
.||.|+||+|.||+.|+..|.+... ++.+++..+... +-..-.+.+.. .......+..+ | ..++
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~--~~~~~~~~~~~--~---~~~a 97 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA--FPLLDKVVVTA--D---PRVA 97 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT--CTTEEEEEEES--C---HHHH
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC--ccCCCcEEEcC--C---hHHH
Confidence 3899999999999999999988642 677777644321 11111222211 11111222221 2 3456
Q ss_pred HccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC-C-CeEEEecc
Q 040584 74 FAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-C-KNLVFSSS 129 (347)
Q Consensus 74 ~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~-~~iv~~SS 129 (347)
++ ++|+||-.||...- ......+.++.|+.-.+.+.+.+.+.. . ..++.+|.
T Consensus 98 ~~--~advVvi~aG~prk--pGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 98 FD--GVAIAIMCGAFPRK--AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp TT--TCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hC--CCCEEEECCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 77 69999999997542 223456788999999999999988753 2 25666664
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00098 Score=59.03 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=72.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEe-cCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK-LDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|| |.+|..++..|+..|+ +|.+++++..+.+.....+.+..........+.. .| + ++++ ++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d------~-~al~--~a 73 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT------Y-DDLA--GA 73 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC------G-GGGT--TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCC------H-HHhC--CC
Confidence 379999997 9999999999999998 9889998876655433333221110011122221 22 2 3455 69
Q ss_pred cEEEEccccccCCccc---cCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESV---QKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~---~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||.+++.+...... ....+....|+...+.+++.+.+.... .+|.+|.
T Consensus 74 D~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999854311100 002345666877888888887776433 4555543
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00054 Score=60.79 Aligned_cols=115 Identities=14% Similarity=0.204 Sum_probs=74.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|| |.+|..++..|+..+. ++.++++...+.+.....+.+... ....+.+.. | + .++++ ++
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~~-~--~----~~a~~--~a 77 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALP-FTSPKKIYS-A--E----YSDAK--DA 77 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GSCCCEEEE-C--C----GGGGG--GC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHH-hcCCeEEEE-C--C----HHHhC--CC
Confidence 479999998 9999999999998875 889998865544433333332211 112333332 2 2 23355 59
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC-CeEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-KNLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~~iv~~SS 129 (347)
|+||..++..... .....+.+..|+.....+++.+.+... ..+|.+|.
T Consensus 78 DvVii~ag~~~k~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 78 DLVVITAGAPQKP--GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp SEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999999864321 223345677788889999998888753 36666643
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00061 Score=59.95 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=74.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-C--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-G--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|||.|+||+|.+|..++..|.++ + .++.+++... ..+-..-.+.+. ......... .. +...+.++ ++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~----~~~~~v~~~-~~--~~~~~~~~--~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI----PTAVKIKGF-SG--EDATPALE--GA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS----CSSEEEEEE-CS--SCCHHHHT--TC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC----CCCceEEEe-cC--CCcHHHhC--CC
Confidence 68999999999999999999875 5 5788888765 322212222221 112222111 00 11234555 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||.+||.... ......+.++.|+...+.+.+.+.+.... .++.+|.
T Consensus 71 Divii~ag~~rk--pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 71 DVVLISAGVARK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp SEEEECCSCSCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999999996432 22345678889999999999998887533 6666664
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00014 Score=64.97 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=55.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC---eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY---KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
+|+|+|.||+|.+|+.+++.|++++| +++++......... +. + .+......|+ +.+ .+. +
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~----~~-~-----~g~~i~~~~~-~~~----~~~--~ 68 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR----MG-F-----AESSLRVGDV-DSF----DFS--S 68 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE----EE-E-----TTEEEECEEG-GGC----CGG--G
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc----cc-c-----CCcceEEecC-CHH----Hhc--C
Confidence 47899999999999999999997654 45555422111000 00 0 0111111121 111 134 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
+|+||.+.+.. ....++..+.+.|+ ++|.+|+..
T Consensus 69 ~DvV~~a~g~~------------------~s~~~a~~~~~aG~-kvId~Sa~~ 102 (340)
T 2hjs_A 69 VGLAFFAAAAE------------------VSRAHAERARAAGC-SVIDLSGAL 102 (340)
T ss_dssp CSEEEECSCHH------------------HHHHHHHHHHHTTC-EEEETTCTT
T ss_pred CCEEEEcCCcH------------------HHHHHHHHHHHCCC-EEEEeCCCC
Confidence 99999998632 13356677777787 577788764
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00015 Score=65.41 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
++|+|+||+|.+|..+++.+...|+ +|+++++++.+.+...+. + +.. ...|..+.+ .+.+.... +
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~------g~~-~~~d~~~~~~~~~~~~~~~~-~ 230 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---L------GFD-AAINYKKDNVAEQLRESCPA-G 230 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---S------CCS-EEEETTTSCHHHHHHHHCTT-C
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---c------CCc-eEEecCchHHHHHHHHhcCC-C
Confidence 7899999999999999999999999 999998865443322211 2 111 123554432 23333333 6
Q ss_pred CcEEEEccc
Q 040584 79 FDAVIHFAG 87 (347)
Q Consensus 79 ~d~vih~a~ 87 (347)
+|+||+++|
T Consensus 231 ~d~vi~~~G 239 (357)
T 2zb4_A 231 VDVYFDNVG 239 (357)
T ss_dssp EEEEEESCC
T ss_pred CCEEEECCC
Confidence 999999997
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00031 Score=63.10 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=51.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~ 79 (347)
++|+|+||+|.+|...++.+...|.+|+++++++.+.+... ++ +.. .. .|..+.+ .+.++....++
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~~----Ga~-~~--~~~~~~~~~~~v~~~~~~~g~ 234 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK----DI----GAA-HV--LNEKAPDFEATLREVMKAEQP 234 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH----HH----TCS-EE--EETTSTTHHHHHHHHHHHHCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hc----CCC-EE--EECCcHHHHHHHHHHhcCCCC
Confidence 68999999999999999999999999999998776654332 22 111 12 2333322 33333322369
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||+++|.
T Consensus 235 D~vid~~g~ 243 (349)
T 3pi7_A 235 RIFLDAVTG 243 (349)
T ss_dssp CEEEESSCH
T ss_pred cEEEECCCC
Confidence 999999874
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.46 E-value=9.5e-05 Score=64.00 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=50.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++|+|+ |.+|+.+++.|++.|++|++++|+.++.+...+.+... . .+. ..|+ +++.+ . ++|+
T Consensus 119 ~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~----~-~~~--~~~~---~~~~~--~--~~Di 183 (271)
T 1nyt_A 119 GLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT----G-SIQ--ALSM---DELEG--H--EFDL 183 (271)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG----S-SEE--ECCS---GGGTT--C--CCSE
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc----C-Cee--EecH---HHhcc--C--CCCE
Confidence 478999997 78999999999999999999998766554443332211 1 221 2333 22222 2 6999
Q ss_pred EEEcccccc
Q 040584 82 VIHFAGLKA 90 (347)
Q Consensus 82 vih~a~~~~ 90 (347)
||++++...
T Consensus 184 vVn~t~~~~ 192 (271)
T 1nyt_A 184 IINATSSGI 192 (271)
T ss_dssp EEECCSCGG
T ss_pred EEECCCCCC
Confidence 999998654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00018 Score=64.22 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=51.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|+++++++.+.+... .++ +... ..|..+.+ .+.+... .+
T Consensus 150 g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~---~~~------g~~~-~~~~~~~~~~~~~~~~~~-~~ 218 (336)
T 4b7c_A 150 GETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLV---EEL------GFDG-AIDYKNEDLAAGLKRECP-KG 218 (336)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---HTT------CCSE-EEETTTSCHHHHHHHHCT-TC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHc------CCCE-EEECCCHHHHHHHHHhcC-CC
Confidence 468999999999999999999999999999988765443321 122 1111 13444433 2223222 26
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 219 ~d~vi~~~g~ 228 (336)
T 4b7c_A 219 IDVFFDNVGG 228 (336)
T ss_dssp EEEEEESSCH
T ss_pred ceEEEECCCc
Confidence 9999999973
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0007 Score=59.53 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=66.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|| |.+|..++..|+..|+ +|++++++..+.+.....+.+... ......+... +. +.++ ++|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~~---~~----~a~~--~aD 69 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAP-VSHGTRVWHG---GH----SELA--DAQ 69 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCC-TTSCCEEEEE---CG----GGGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhh-hcCCeEEEEC---CH----HHhC--CCC
Confidence 58999997 9999999999999999 999999875433322222211100 0112222221 22 3455 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||.+++..... .....+.+..|+...+.+++.+.+.... .+|.+|
T Consensus 70 vVIi~~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 70 VVILTAGANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp EEEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred EEEEcCCCCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 999999854321 1223456677888889999888876433 455444
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00024 Score=63.34 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=51.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|...++.+...|++|+++++++.+.+. +.++ +.. .. .|..+. +.+.+.....+
T Consensus 149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~~~~----ga~-~~--~~~~~~~~~~~~~~~~~~~g 217 (334)
T 3qwb_A 149 GDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKI----AKEY----GAE-YL--INASKEDILRQVLKFTNGKG 217 (334)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HHHT----TCS-EE--EETTTSCHHHHHHHHTTTSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHc----CCc-EE--EeCCCchHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999886554432 2222 111 12 233332 23344443346
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 218 ~D~vid~~g~ 227 (334)
T 3qwb_A 218 VDASFDSVGK 227 (334)
T ss_dssp EEEEEECCGG
T ss_pred ceEEEECCCh
Confidence 9999999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00024 Score=63.12 Aligned_cols=76 Identities=21% Similarity=0.144 Sum_probs=51.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|+++.+++.+.+.. .++ +.. .. .|..+. +.+.+.....+
T Consensus 141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~~----Ga~-~~--~~~~~~~~~~~~~~~~~~~g 209 (325)
T 3jyn_A 141 GEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA----KAL----GAW-ET--IDYSHEDVAKRVLELTDGKK 209 (325)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----HHH----TCS-EE--EETTTSCHHHHHHHHTTTCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHc----CCC-EE--EeCCCccHHHHHHHHhCCCC
Confidence 46899999999999999999999999999998865544332 222 111 12 233332 23334443346
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 210 ~Dvvid~~g~ 219 (325)
T 3jyn_A 210 CPVVYDGVGQ 219 (325)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCh
Confidence 9999999874
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0013 Score=57.91 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=71.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|.|+| +|.+|..++..|++.| ++|++++|+..+.+.....+.+........+.....| . +.++ ++|
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d---~----~~~~--~aD 71 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---W----AALA--DAD 71 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---G----GGGT--TCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCC---H----HHhC--CCC
Confidence 7899999 8999999999999999 8999999876555443333322111111123332223 2 2355 589
Q ss_pred EEEEccccccCC--ccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVG--ESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~--~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||-+++..... .......+....|+.....+++.+.+.... .+|.+|
T Consensus 72 vViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 999998864310 001122345667888888888888775433 444433
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00023 Score=66.14 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=34.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
|+|+|.|+| .|++|..++..|++.|++|++++|++.+.+.
T Consensus 1 M~mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~ 40 (450)
T 3gg2_A 1 MSLDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRNKIEQ 40 (450)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 779999999 7999999999999999999999988665443
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=66.10 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=55.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCe---EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYK---TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~---v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|+++|.|.||||++|..|++.|.++++. +..+........... + .+....+...| .+ .+.
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-----~---~~~~~~~~~~~---~~----~~~-- 63 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-----F---KDQDITIEETT---ET----AFE-- 63 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-----E---TTEEEEEEECC---TT----TTT--
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-----e---cCCCceEeeCC---HH----Hhc--
Confidence 8899999999999999999999987663 344432222110000 0 00111222222 11 133
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
++|+||.+++... +..++..+.+.|+ ++|=.|+..
T Consensus 64 ~~Dvvf~a~~~~~------------------s~~~a~~~~~~G~-~vIDlSa~~ 98 (366)
T 3pwk_A 64 GVDIALFSAGSST------------------SAKYAPYAVKAGV-VVVDNTSYF 98 (366)
T ss_dssp TCSEEEECSCHHH------------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCCEEEECCChHh------------------HHHHHHHHHHCCC-EEEEcCCcc
Confidence 6999999986321 3345566666777 788888864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00037 Score=60.51 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=56.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++++|+|+ |.+|+.++..|.+.|. +|+++.|+.++.+.+.+.+..... .+.....++. ++.+.+. ++|
T Consensus 127 ~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~----~~~i~~~~~~---~l~~~l~--~~D 196 (283)
T 3jyo_A 127 LDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVG----REAVVGVDAR---GIEDVIA--AAD 196 (283)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHT----SCCEEEECST---THHHHHH--HSS
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcC----CceEEEcCHH---HHHHHHh--cCC
Confidence 478999997 8999999999999998 799999987777666666554321 2233333433 3455666 489
Q ss_pred EEEEccccc
Q 040584 81 AVIHFAGLK 89 (347)
Q Consensus 81 ~vih~a~~~ 89 (347)
+||++....
T Consensus 197 iVInaTp~G 205 (283)
T 3jyo_A 197 GVVNATPMG 205 (283)
T ss_dssp EEEECSSTT
T ss_pred EEEECCCCC
Confidence 999998654
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=57.26 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCcccHHHHHHHHhCCCeEEEEeCCCchhH---HHHHHHHHhhccCCCCeEEEecCCCCH--HHHHHHHcc----CCCcE
Q 040584 11 VGYIGSHTVLQLLLGGYKTVVVDNLDNASE---IAVAKVKELAGYQGNNMTFHKLDLRDK--AALEVVFAG----TKFDA 81 (347)
Q Consensus 11 tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~~~----~~~d~ 81 (347)
+|+++...++.|.+.|++|++..|+..... ...+.+... +.+...+.+|++++ +++.++++. .+-|+
T Consensus 25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~----G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dV 100 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA----GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDV 100 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT----TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCE
T ss_pred cCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc----CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 568999999999999999998877654321 112223222 34566778999998 887776542 33499
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
+|||||..
T Consensus 101 LVnnAgg~ 108 (157)
T 3gxh_A 101 LVHCLANY 108 (157)
T ss_dssp EEECSBSH
T ss_pred EEECCCCC
Confidence 99999853
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00039 Score=62.23 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=52.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|+++++++.+.+...+ + +... . .|..+. +.+.+.....+
T Consensus 145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----l----ga~~-~--~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR----L----GAAY-V--IDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----H----TCSE-E--EETTTSCHHHHHHHHTTTSC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----C----CCcE-E--EeCCcccHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988776544322 2 1111 2 233332 23333333337
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 214 ~Dvvid~~g~ 223 (340)
T 3gms_A 214 ADAAIDSIGG 223 (340)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCC
Confidence 9999999984
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00035 Score=62.41 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=56.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d~ 81 (347)
++++|+|+ |.+|+.+++.|.++|+ |++++++++..+ .. + .++..+.+|.+|++.++++ ++ ++|.
T Consensus 116 ~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~----~------~~~~~i~gd~~~~~~L~~a~i~--~a~~ 180 (336)
T 1lnq_A 116 RHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VL----R------SGANFVHGDPTRVSDLEKANVR--GARA 180 (336)
T ss_dssp CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HH----H------TTCEEEESCTTSHHHHHHTCST--TEEE
T ss_pred CCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HH----h------CCcEEEEeCCCCHHHHHhcChh--hccE
Confidence 48999995 9999999999999999 999987665443 21 1 3678999999999999887 55 6899
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
||-+.
T Consensus 181 vi~~~ 185 (336)
T 1lnq_A 181 VIVDL 185 (336)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98875
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0019 Score=55.06 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=68.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.|+ |.+|+++++.|...|. +++++++.. .+.+...+.+..+.+ .-++..+.
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~~~v~~~~ 104 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNP--DIQLTALQ 104 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCT--TSEEEEEC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCC--CCEEEEEe
Confidence 368999995 6699999999999997 566664432 344444555554422 12344444
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
.++. .+.+.++++ ++|+||.+.. |...-..+.++|.+.++ .+|+.+....+|
T Consensus 105 ~~~~-~~~~~~~~~--~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~~-p~i~~~~~g~~G 156 (251)
T 1zud_1 105 QRLT-GEALKDAVA--RADVVLDCTD-----------------NMATRQEINAACVALNT-PLITASAVGFGG 156 (251)
T ss_dssp SCCC-HHHHHHHHH--HCSEEEECCS-----------------SHHHHHHHHHHHHHTTC-CEEEEEEEBTEE
T ss_pred ccCC-HHHHHHHHh--cCCEEEECCC-----------------CHHHHHHHHHHHHHhCC-CEEEEeccccce
Confidence 4443 456777777 5899999853 12222345667777765 577776654443
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00063 Score=59.80 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=55.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCC---CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNL---DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+++++|+|+ |..|+.++..|.+.|. +|+++.|+ ..+.+.+.+.+.... .......++.+.+.+.+.+.
T Consensus 148 gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-----~~~v~~~~~~~l~~~~~~l~-- 219 (312)
T 3t4e_A 148 GKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-----DCVVTVTDLADQHAFTEALA-- 219 (312)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-----SCEEEEEETTCHHHHHHHHH--
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-----CcceEEechHhhhhhHhhcc--
Confidence 478999996 8999999999999998 89999998 444444444443321 22233345555444455566
Q ss_pred CCcEEEEccccc
Q 040584 78 KFDAVIHFAGLK 89 (347)
Q Consensus 78 ~~d~vih~a~~~ 89 (347)
.+|+||++....
T Consensus 220 ~~DiIINaTp~G 231 (312)
T 3t4e_A 220 SADILTNGTKVG 231 (312)
T ss_dssp HCSEEEECSSTT
T ss_pred CceEEEECCcCC
Confidence 489999997654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00021 Score=66.59 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=58.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.|+|+|.| .|-+|++|++.|.++||+|+++++++.....+.+. -.+..+.+|-++++.++++=-+ .+|.
T Consensus 3 ~M~iiI~G-~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~---------~~~~~i~Gd~~~~~~L~~Agi~-~ad~ 71 (461)
T 4g65_A 3 AMKIIILG-AGQVGGTLAENLVGENNDITIVDKDGDRLRELQDK---------YDLRVVNGHASHPDVLHEAGAQ-DADM 71 (461)
T ss_dssp CEEEEEEC-CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHH---------SSCEEEESCTTCHHHHHHHTTT-TCSE
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh---------cCcEEEEEcCCCHHHHHhcCCC-cCCE
Confidence 48999999 69999999999999999999999875554333222 1567899999999999988433 6898
Q ss_pred EEEc
Q 040584 82 VIHF 85 (347)
Q Consensus 82 vih~ 85 (347)
+|-+
T Consensus 72 ~ia~ 75 (461)
T 4g65_A 72 LVAV 75 (461)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8755
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00041 Score=62.39 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=51.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|+++++++.+.+.. .++ +.. .. .|..+. +.+.++. ..+
T Consensus 168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~l----Ga~-~~--~~~~~~~~~~~~~~~~-~~g 235 (353)
T 4dup_A 168 GESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEAC----ERL----GAK-RG--INYRSEDFAAVIKAET-GQG 235 (353)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHH----TCS-EE--EETTTSCHHHHHHHHH-SSC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----Hhc----CCC-EE--EeCCchHHHHHHHHHh-CCC
Confidence 36899999999999999999999999999999876554432 222 111 12 233332 2333333 337
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 236 ~Dvvid~~g~ 245 (353)
T 4dup_A 236 VDIILDMIGA 245 (353)
T ss_dssp EEEEEESCCG
T ss_pred ceEEEECCCH
Confidence 9999999974
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00054 Score=61.36 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=51.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH-HHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK-AALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~d 80 (347)
+++|+|+||+|.+|..+++.+...|++|+++.+++.+.+... ++ +.. ..+..+ .+. +.+.++....++|
T Consensus 160 g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~~----ga~-~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK----SV----GAD-IVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----HH----TCS-EEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hc----CCc-EEecCc-hhHHHHHHHHhCCCCce
Confidence 368999999999999999999999999999998776654322 22 111 222223 222 2333333333699
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||+++|.
T Consensus 230 vvid~~g~ 237 (342)
T 4eye_A 230 MVVDPIGG 237 (342)
T ss_dssp EEEESCC-
T ss_pred EEEECCch
Confidence 99999974
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00036 Score=62.55 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=50.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH----HHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK----AALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~~~~ 77 (347)
+++|+|+||+|.+|..+++.+...|++|+++++++.+.+...+ ++ +... ..|..+. +.+.++.. .
T Consensus 156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~---~~------g~~~-~~d~~~~~~~~~~~~~~~~-~ 224 (345)
T 2j3h_A 156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT---KF------GFDD-AFNYKEESDLTAALKRCFP-N 224 (345)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TS------CCSE-EEETTSCSCSHHHHHHHCT-T
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---Hc------CCce-EEecCCHHHHHHHHHHHhC-C
Confidence 4689999999999999999999999999999886544332211 11 1111 1244432 22333322 2
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|+||+++|.
T Consensus 225 ~~d~vi~~~g~ 235 (345)
T 2j3h_A 225 GIDIYFENVGG 235 (345)
T ss_dssp CEEEEEESSCH
T ss_pred CCcEEEECCCH
Confidence 69999999873
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00027 Score=63.56 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
++|+|.||+|.+|+.+++.|.+.. .+++++.+..+......+....+. ..+ ..|+.-.+ .+.+. ++|+
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~----~~v---~~dl~~~~--~~~~~--~vDv 85 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLR----AQK---LPTLVSVK--DADFS--TVDA 85 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGT----TSC---CCCCBCGG--GCCGG--GCSE
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhc----Ccc---cccceecc--hhHhc--CCCE
Confidence 589999999999999999999875 488777654333221111111111 111 12332222 23344 5999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
||.+++... +...+..+ +.|+ ++|-.|+..
T Consensus 86 Vf~atp~~~------------------s~~~a~~~-~aG~-~VId~sa~~ 115 (359)
T 1xyg_A 86 VFCCLPHGT------------------TQEIIKEL-PTAL-KIVDLSADF 115 (359)
T ss_dssp EEECCCTTT------------------HHHHHHTS-CTTC-EEEECSSTT
T ss_pred EEEcCCchh------------------HHHHHHHH-hCCC-EEEECCccc
Confidence 999986432 22455556 6666 688888754
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0019 Score=56.85 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=71.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|+ |.+|..++..|++. |++|++++++..+.+.....+.+..........+... .|. .. ++ ++|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~--~aD 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY---AD-TA--NSD 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG---GG-GT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CCH---HH-HC--CCC
Confidence 58999997 99999999999985 7999999998776553322222110000111122111 122 22 45 589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||-+++.... ......+.+..|+.....+++.+.+.... .+|.++
T Consensus 72 vViiav~~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 72 IVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 99999975321 11123456667888888888888776433 555554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0029 Score=54.93 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=69.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC------------------chhHHHHHHHHHhhccCCCCeEEEecC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD------------------NASEIAVAKVKELAGYQGNNMTFHKLD 63 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (347)
.+|+|.| .|.+|+.+++.|...|. ++++++... .+.+...+.+..+.+ .-+++.+..+
T Consensus 37 ~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP--~v~v~~~~~~ 113 (292)
T 3h8v_A 37 FAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINP--DVLFEVHNYN 113 (292)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCT--TSEEEEECCC
T ss_pred CeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCC--CcEEEEeccc
Confidence 5899999 78899999999999985 566666544 344445555555532 2345556667
Q ss_pred CCCHHHHHHHHcc---------CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 64 LRDKAALEVVFAG---------TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 64 l~d~~~~~~~~~~---------~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
+.+.+.+..+++. .++|+||.+.. |...-..+-++|.+.++ .+|+.+.
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-----------------n~~~R~~in~~c~~~~~-Pli~~gv 170 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD-----------------NFEARMTINTACNELGQ-TWMESGV 170 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-----------------SHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCc-----------------chhhhhHHHHHHHHhCC-CEEEeee
Confidence 7766666666520 16899998852 33333456677888776 5666554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.33 E-value=7.7e-05 Score=57.92 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=50.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.++|+|+|+ |.+|+.+++.|.+.|++|++.+|+..+.+...+.+ +..... . +++.+++. ++|+
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~---------~~~~~~--~---~~~~~~~~--~~Di 83 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY---------EYEYVL--I---NDIDSLIK--NNDV 83 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH---------TCEEEE--C---SCHHHHHH--TCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh---------CCceEe--e---cCHHHHhc--CCCE
Confidence 479999995 99999999999999999889998766554433322 122221 2 23455666 5899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
||.+.+..
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99998643
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.002 Score=57.02 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=69.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhc--cCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAG--YQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+|.|+|+ |.+|..++..|++.|+ +|++++++....+.....+..... ....++.. ..| + +.++ ++
T Consensus 5 ~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d------~-~a~~--~a 73 (317)
T 2ewd_A 5 RKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDD------Y-ADIS--GS 73 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESC------G-GGGT--TC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCC------H-HHhC--CC
Confidence 68999997 9999999999999998 999999987655442211111100 00112221 122 2 3455 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||-+++..... .....+....|....+.+++.+.+.... .+|.+|.
T Consensus 74 DiVi~avg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 DVVIITASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp SEEEECCCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999999864321 1122334455777777788777765323 4555554
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=63.62 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=58.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|++|.|.||+|.+|+.+++.|++.. .+++++.+..+.... +....+... +. ....+.+.+ + +. ++|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~----~~~~~~~~~-g~--~~~~~~~~~---~-~~--~vD 70 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP----VHFVHPNLR-GR--TNLKFVPPE---K-LE--PAD 70 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB----GGGTCGGGT-TT--CCCBCBCGG---G-CC--CCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch----hHHhCchhc-Cc--ccccccchh---H-hc--CCC
Confidence 3689999999999999999999875 488777654332211 111000000 00 001122322 2 34 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
+||.+++... ...++..+.+.|+ ++|-.|+..
T Consensus 71 vV~~a~g~~~------------------s~~~a~~~~~aG~-~VId~Sa~~ 102 (345)
T 2ozp_A 71 ILVLALPHGV------------------FAREFDRYSALAP-VLVDLSADF 102 (345)
T ss_dssp EEEECCCTTH------------------HHHTHHHHHTTCS-EEEECSSTT
T ss_pred EEEEcCCcHH------------------HHHHHHHHHHCCC-EEEEcCccc
Confidence 9999986421 2345566666776 688888864
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00056 Score=60.80 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=59.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCC---chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLD---NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|++|+|.||||++|+.|++.|.+. ++++..+.+++ ...+...+..+.+.+. ....+... .+.+ ++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~--~~~~v~~~--~~~~---~~~~-- 74 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGI--VELPLQPM--SDIS---EFSP-- 74 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTT--CCCBEEEE--SSGG---GTCT--
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCc--cceeEecc--CCHH---HHhc--
Confidence 378999999999999999999984 67887664433 2222222222222110 01222221 0122 2223
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
++|+||.|.+.. .+..++..+.+.|+ ++|-.|+..
T Consensus 75 ~~Dvvf~a~p~~------------------~s~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 75 GVDVVFLATAHE------------------VSHDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp TCSEEEECSCHH------------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCCEEEECCChH------------------HHHHHHHHHHHCCC-EEEEcCCcc
Confidence 699999887532 12345666667777 788888864
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00061 Score=61.12 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=51.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHc-c
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFA-G 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~-~ 76 (347)
+++|+|+||+|.+|..+++.+... |++|+++++++.+.+.. .++ +... . .|..+.+ .+.++.. .
T Consensus 171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~----~~~----g~~~-~--~~~~~~~~~~~~~~~~~~~ 239 (347)
T 1jvb_A 171 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA----KRA----GADY-V--INASMQDPLAEIRRITESK 239 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH----HHH----TCSE-E--EETTTSCHHHHHHHHTTTS
T ss_pred CCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHh----CCCE-E--ecCCCccHHHHHHHHhcCC
Confidence 368999999999999999999998 99999998875544322 222 1111 1 2444333 2444443 3
Q ss_pred CCCcEEEEcccc
Q 040584 77 TKFDAVIHFAGL 88 (347)
Q Consensus 77 ~~~d~vih~a~~ 88 (347)
++|+||+++|.
T Consensus 240 -~~d~vi~~~g~ 250 (347)
T 1jvb_A 240 -GVDAVIDLNNS 250 (347)
T ss_dssp -CEEEEEESCCC
T ss_pred -CceEEEECCCC
Confidence 69999999984
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0026 Score=56.02 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=74.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|| |.+|..++..|+..+ .++.++++...+.+.....+.+... ....+.+.. + +. ++++ ++|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~-~~~~~~v~~-~--~~----~a~~--~aD 69 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP-FAHPVWVWA-G--SY----GDLE--GAR 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGG-GSCCCEEEE-C--CG----GGGT--TEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHh-hcCCeEEEE-C--CH----HHhC--CCC
Confidence 68999997 999999999999987 6899998875544433333332211 112333332 2 22 3355 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||..++..... .....+....|+.....+++.+.+.... .+|.+|.
T Consensus 70 ~Vii~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 70 AVVLAAGVAQRP--GETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp EEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEECCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999999865321 1223456777888899999988887533 5666543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0036 Score=55.29 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
++|+|.|+|+ |.+|..++..|++.|+ +|++++|+....+.....+.+-.. .......... .+. +.++ +
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~----~~~~--~ 75 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-FYPTVSIDGS--DDP----EICR--D 75 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-GSTTCEEEEE--SCG----GGGT--T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhh-hcCCeEEEeC--CCH----HHhC--C
Confidence 3579999997 9999999999999999 999999875433211111111111 0112222222 122 2344 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
+|+||-+++..... .....+....|+.....+++.+++.....+|...+
T Consensus 76 aD~Vii~v~~~~~~--g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 76 ADMVVITAGPRQKP--GQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp CSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CCEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 89999999754321 12234566678887778888777654333443333
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.011 Score=49.97 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=88.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH---ccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF---AGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~~ 78 (347)
|+|.|.|++|.+|+.+++.+.+. ++++.++.......+.... .... +..|.+.++...+.+ .+.+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~----------~~~D-vvIDfT~p~a~~~~~~~a~~~g 69 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD----------GNTE-VVIDFTHPDVVMGNLEFLIDNG 69 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH----------TTCC-EEEECSCTTTHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc----------cCCc-EEEEccChHHHHHHHHHHHHcC
Confidence 58999999999999999999875 8999865543332222111 0122 345666655444332 2336
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCC-------------CCCCCCCC-
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGW-------------PKVVPCTE- 143 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~-------------~~~~~~~e- 143 (347)
+++|+=..|... +-...+.++|++. ++ .+++.++.+. |. -++--+.|
T Consensus 70 ~~~VigTTG~~~----------------e~~~~l~~aa~~~~~~-~vv~a~N~si-Gv~ll~~l~~~aa~~~~dieIiE~ 131 (245)
T 1p9l_A 70 IHAVVGTTGFTA----------------ERFQQVESWLVAKPNT-SVLIAPNFAI-GAVLSMHFAKQAARFFDSAEVIEL 131 (245)
T ss_dssp CEEEECCCCCCH----------------HHHHHHHHHHHTSTTC-EEEECSCCCH-HHHHHHHHHHHHGGGCSEEEEEEE
T ss_pred CCEEEcCCCCCH----------------HHHHHHHHHHHhCCCC-CEEEECCccH-HHHHHHHHHHHHHhhcCCEEEEEC
Confidence 788776655321 1112345555544 44 5666555432 10 00000112
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhh----------------h--cCCceEEEeecccccCCC
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHR----------------S--DSEWKIILLRYFNPVGAH 188 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~----------------~--~~~~~~~~lR~~~v~G~~ 188 (347)
+...+.-.|.|.++..+|.+...... . ..++.+..+|.|.+.|-|
T Consensus 132 HH~~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~h 194 (245)
T 1p9l_A 132 HHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQ 194 (245)
T ss_dssp ECTTCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEEE
T ss_pred cccCCCCCCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeEE
Confidence 22333344678888888887643210 0 026788999999999864
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0028 Score=56.01 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=70.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|.|+|+ |.+|..++..|++.|+ +|++++++....+.....+.+... ......+.. .|. +.++ ++|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~---~d~----~~~~--~aD 69 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYA---GDY----ADLK--GSD 69 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEE---CCG----GGGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hcCCcEEEe---CCH----HHhC--CCC
Confidence 58999997 9999999999999999 999999876554433322222111 011122222 232 2345 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||-+++..... .....+....|+.....+++.+.+.... .+|.+|
T Consensus 70 vViiav~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 70 VVIVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp EEEECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 999999854321 1122345666888888888888776433 455544
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00049 Score=60.28 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=52.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+|+ |.+|+.++..|++.|+ +|+++.|+..+.+.+.+.+. .... +..+.+++.+.+. ++|
T Consensus 141 ~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~-------~~~~----~~~~~~~~~~~~~--~aD 206 (297)
T 2egg_A 141 GKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGD-------ERRS----AYFSLAEAETRLA--EYD 206 (297)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSC-------SSSC----CEECHHHHHHTGG--GCS
T ss_pred CCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhh-------hccC----ceeeHHHHHhhhc--cCC
Confidence 478999996 7899999999999998 89999987655544333221 1000 1123355666676 589
Q ss_pred EEEEcccccc
Q 040584 81 AVIHFAGLKA 90 (347)
Q Consensus 81 ~vih~a~~~~ 90 (347)
+||++.+...
T Consensus 207 ivIn~t~~~~ 216 (297)
T 2egg_A 207 IIINTTSVGM 216 (297)
T ss_dssp EEEECSCTTC
T ss_pred EEEECCCCCC
Confidence 9999998654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00042 Score=62.57 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=53.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
++|+|+|+ |.+|+.+++.|...|.+|++++|++.+.+...+.. . ..+..+ ..+.+++.+.+. ++|+|
T Consensus 168 ~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~----~---~~~~~~---~~~~~~~~~~~~--~~DvV 234 (361)
T 1pjc_A 168 GKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLF----G---SRVELL---YSNSAEIETAVA--EADLL 234 (361)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----G---GGSEEE---ECCHHHHHHHHH--TCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhh----C---ceeEee---eCCHHHHHHHHc--CCCEE
Confidence 68999998 99999999999999999999999866554433221 1 112121 134556777776 58999
Q ss_pred EEccccc
Q 040584 83 IHFAGLK 89 (347)
Q Consensus 83 ih~a~~~ 89 (347)
|++++..
T Consensus 235 I~~~~~~ 241 (361)
T 1pjc_A 235 IGAVLVP 241 (361)
T ss_dssp EECCCCT
T ss_pred EECCCcC
Confidence 9998753
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00087 Score=57.69 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=56.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEE-EeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVV-VDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|++|.|+||+|.+|+.+++.+.+. ++++.+ ++|+..... -..+..+.+ ... ++.-.+++.+++. ++
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~--G~d~gel~g-----~~~---gv~v~~dl~~ll~--~~ 74 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQL--GQDAGAFLG-----KQT---GVALTDDIERVCA--EA 74 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTT--TSBTTTTTT-----CCC---SCBCBCCHHHHHH--HC
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccc--cccHHHHhC-----CCC---CceecCCHHHHhc--CC
Confidence 479999999999999999999875 678876 455533210 000000000 000 1111234556666 48
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
|+||+++.+ ..+...++.|.+.|+ ++| ++|+
T Consensus 75 DVVIDfT~p------------------~a~~~~~~~al~~G~-~vV-igTT 105 (272)
T 4f3y_A 75 DYLIDFTLP------------------EGTLVHLDAALRHDV-KLV-IGTT 105 (272)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHHTC-EEE-ECCC
T ss_pred CEEEEcCCH------------------HHHHHHHHHHHHcCC-CEE-EECC
Confidence 999999632 123356677777776 555 4443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00044 Score=57.58 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=46.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|.|+| +|.+|+.+++.|.+.|++|++++|+..+.+. +. ..++... ++.++++ ++|+
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~----~~------~~g~~~~--------~~~~~~~--~~Dv 86 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTAR----LF------PSAAQVT--------FQEEAVS--SPEV 86 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHH----HS------BTTSEEE--------EHHHHTT--SCSE
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HH------HcCCcee--------cHHHHHh--CCCE
Confidence 47899999 8999999999999999999999887543321 11 1133321 2445666 5899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||.+..
T Consensus 87 Vi~av~ 92 (215)
T 2vns_A 87 IFVAVF 92 (215)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 998875
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00048 Score=61.94 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDN 34 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r 34 (347)
|+++|.|.||+|++|+.+++.|++.. .+|.++.+
T Consensus 7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 55799999999999999999998764 68877764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0008 Score=60.36 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=49.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~ 77 (347)
+.+|+|+|+ |.+|..+++.+...|+ +|+++++++.+.+. +.++ +...+ .|..+.+ .+.++....
T Consensus 168 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~----~~~~------Ga~~~-~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 168 GKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRREL----AKKV------GADYV-INPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHH----HHHH------TCSEE-ECTTTSCHHHHHHHHTTTS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH----HHHh------CCCEE-ECCCCcCHHHHHHHHcCCC
Confidence 468999999 9999999999999999 99999887544332 2222 11211 2443322 233333323
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|+||+++|.
T Consensus 236 g~D~vid~~g~ 246 (348)
T 2d8a_A 236 GVDVFLEFSGA 246 (348)
T ss_dssp CEEEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 69999999873
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0014 Score=59.03 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=61.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--H-HHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--K-AALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~-~~~~~~~~~~~ 78 (347)
+++|+|+||+|.+|..+++.+...|++|+++.+++.+.+. +.++ +...+ .|..+ . +.+.+.. ..+
T Consensus 164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~----~~~~------Ga~~~-~~~~~~~~~~~~~~~~-~~g 231 (362)
T 2c0c_A 164 GKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAF----LKSL------GCDRP-INYKTEPVGTVLKQEY-PEG 231 (362)
T ss_dssp TCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHH----HHHT------TCSEE-EETTTSCHHHHHHHHC-TTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH----HHHc------CCcEE-EecCChhHHHHHHHhc-CCC
Confidence 3689999999999999999999999999999886544332 2222 11111 23332 2 1222222 226
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
+|+||+++|.. .....++.++.. +++|.+++..
T Consensus 232 ~D~vid~~g~~------------------~~~~~~~~l~~~--G~iv~~g~~~ 264 (362)
T 2c0c_A 232 VDVVYESVGGA------------------MFDLAVDALATK--GRLIVIGFIS 264 (362)
T ss_dssp EEEEEECSCTH------------------HHHHHHHHEEEE--EEEEECCCGG
T ss_pred CCEEEECCCHH------------------HHHHHHHHHhcC--CEEEEEeCCC
Confidence 99999998731 112334444433 3899888754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00086 Score=62.36 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=33.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
+++|+|+||+|.+|...++.+...|.+|+++.+++.+.
T Consensus 221 g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~ 258 (447)
T 4a0s_A 221 GDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKE 258 (447)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 36899999999999999999999999999988755443
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0034 Score=55.15 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=74.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEe-cCCCCHHHHHHHHccCCCcE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK-LDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||.|+|| |.+|..++..|+..|. +|.++++...+.+.....+.+..........+.. .| . ++++ ++|+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d---~----~a~~--~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNS---Y----EDMR--GSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESC---G----GGGT--TCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCC---H----HHhC--CCCE
Confidence 6899998 9999999999998887 7999998876655433333322110111222322 23 2 3465 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
||-.++..... .....+....|+.....+++.+.+.... .+|.+|.
T Consensus 71 Vi~~ag~~~k~--G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 71 VLVTAGIGRKP--GMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EEECCSCCCCS--SCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEeCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99999865421 2233456777888899999988876433 6666654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00045 Score=60.86 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|||+|.|+| .|.+|+.++..|.+.|++|++++|++...+
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~ 40 (316)
T 2ew2_A 2 NAMKIAIAG-AGAMGSRLGIMLHQGGNDVTLIDQWPAHIE 40 (316)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 468999999 599999999999999999999988755443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00013 Score=63.72 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=50.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++|+|++ .+|+.+++.|++.| +|++++|+..+.+...+.+..... ... .+.+|+.+. .+.+. ++|+
T Consensus 128 ~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~---~~~-~~~~d~~~~---~~~~~--~~Di 196 (287)
T 1nvt_A 128 DKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN---KKF-GEEVKFSGL---DVDLD--GVDI 196 (287)
T ss_dssp SCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT---CCH-HHHEEEECT---TCCCT--TCCE
T ss_pred CCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc---ccc-ceeEEEeeH---HHhhC--CCCE
Confidence 4789999975 99999999999999 999999876655554444432110 000 011222221 22233 5999
Q ss_pred EEEcccccc
Q 040584 82 VIHFAGLKA 90 (347)
Q Consensus 82 vih~a~~~~ 90 (347)
||++++...
T Consensus 197 lVn~ag~~~ 205 (287)
T 1nvt_A 197 IINATPIGM 205 (287)
T ss_dssp EEECSCTTC
T ss_pred EEECCCCCC
Confidence 999998654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0022 Score=55.20 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=49.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++++|+|+ |.+|+.++..|.+.|. +|+++.|+.++.+.+.+.+.. ..+..+. +.+ +.. . ++|
T Consensus 120 ~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~------~~~~~~~--~~~---l~~--~--~~D 183 (272)
T 3pwz_A 120 NRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH------SRLRISR--YEA---LEG--Q--SFD 183 (272)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC------TTEEEEC--SGG---GTT--C--CCS
T ss_pred CCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc------CCeeEee--HHH---hcc--c--CCC
Confidence 478999996 8899999999999996 899999987666555444321 1233332 222 111 2 689
Q ss_pred EEEEccccc
Q 040584 81 AVIHFAGLK 89 (347)
Q Consensus 81 ~vih~a~~~ 89 (347)
+||++....
T Consensus 184 ivInaTp~g 192 (272)
T 3pwz_A 184 IVVNATSAS 192 (272)
T ss_dssp EEEECSSGG
T ss_pred EEEECCCCC
Confidence 999997654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0015 Score=58.42 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=49.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH-HHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK-AALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~d 80 (347)
+.+|||+||+|.+|..+++.+...|++|+++ +++.+.+ .+.++ +...+. +-.+. +.+.+.....++|
T Consensus 151 g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~----~~~~l------Ga~~i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 151 GQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLE----YVRDL------GATPID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHH----HHHHH------TSEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHH----HHHHc------CCCEec-cCCCHHHHHHHHhcCCCce
Confidence 3689999999999999999999999999988 5444332 22333 223322 22222 2333444434799
Q ss_pred EEEEccc
Q 040584 81 AVIHFAG 87 (347)
Q Consensus 81 ~vih~a~ 87 (347)
+||+++|
T Consensus 219 ~vid~~g 225 (343)
T 3gaz_A 219 LVYDTLG 225 (343)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999987
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00055 Score=60.59 Aligned_cols=35 Identities=20% Similarity=0.035 Sum_probs=32.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLD 36 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~ 36 (347)
|+|+|.|+| .|.+|..+++.|++.| ++|++.+|++
T Consensus 23 M~m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 23 MMTTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred cCCeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 678999999 8999999999999999 9999999876
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00057 Score=59.51 Aligned_cols=39 Identities=10% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
|||+|.|+|+||.+|+.+++.|.+.|++|++.+|++...
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~ 48 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGR 48 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 467999999889999999999999999999998865443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0013 Score=58.63 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=49.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~~ 78 (347)
+++|+|+|| |.+|..+++.+...|++|+++++++.+.+. +.++ +... ..|..+. +.+.++. . +
T Consensus 165 g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~~~l------Ga~~-~~d~~~~~~~~~~~~~~-~-~ 230 (339)
T 1rjw_A 165 GEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLEL----AKEL------GADL-VVNPLKEDAAKFMKEKV-G-G 230 (339)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHH----HHHT------TCSE-EECTTTSCHHHHHHHHH-S-S
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHC------CCCE-EecCCCccHHHHHHHHh-C-C
Confidence 368999999 779999999999999999999887554432 2222 1221 2355432 2333333 2 7
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 231 ~d~vid~~g~ 240 (339)
T 1rjw_A 231 VHAAVVTAVS 240 (339)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0015 Score=57.20 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=30.5
Q ss_pred Cce-EEEE-cCC-----------------CcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 2 AKN-ILVI-GGV-----------------GYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~-vlIt-Gat-----------------G~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
+++ |||| |+| |-.|.+++++++++|++|+.+.+...
T Consensus 36 gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 36 GRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp TCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred CCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 355 8998 666 99999999999999999999887543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00074 Score=58.72 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=35.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAK 45 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (347)
++|.|+| .|.+|+.+++.|++.|++|++.+|++...+...+.
T Consensus 5 ~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~ 46 (283)
T 4e12_A 5 TNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR 46 (283)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence 6899998 69999999999999999999999887765554443
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.003 Score=58.28 Aligned_cols=95 Identities=9% Similarity=0.229 Sum_probs=62.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CC---eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCC--CCHHH-HHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GY---KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL--RDKAA-LEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~-~~~~~ 74 (347)
+++|+|+| .|.+|+.+++.|+++ ++ +|++++......+. .+.. ++.+...++ .|.++ +.+++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~-~~~~---------g~~~~~~~Vdadnv~~~l~aLl 81 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDV-AQQY---------GVSFKLQQITPQNYLEVIGSTL 81 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCH-HHHH---------TCEEEECCCCTTTHHHHTGGGC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhH-Hhhc---------CCceeEEeccchhHHHHHHHHh
Confidence 46899999 999999999999997 45 68888765443321 1111 345555555 44433 55677
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
++ .|+|||++-... ...++++|.+.|+ ++ ++++
T Consensus 82 ~~--~DvVIN~s~~~~------------------~l~Im~acleaGv-~Y--lDTa 114 (480)
T 2ph5_A 82 EE--NDFLIDVSIGIS------------------SLALIILCNQKGA-LY--INAA 114 (480)
T ss_dssp CT--TCEEEECCSSSC------------------HHHHHHHHHHHTC-EE--EESS
T ss_pred cC--CCEEEECCcccc------------------CHHHHHHHHHcCC-CE--EECC
Confidence 74 499998763221 3368999999986 44 4544
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00098 Score=58.47 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=51.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+.+|+|+||+|.+|..+++.+...|++|+++.+++.+.+... ++ +... ..|..+.+++.+.+. ++|+
T Consensus 126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~~------ga~~-~~~~~~~~~~~~~~~--~~d~ 192 (302)
T 1iz0_A 126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL----AL------GAEE-AATYAEVPERAKAWG--GLDL 192 (302)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH----HT------TCSE-EEEGGGHHHHHHHTT--SEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----hc------CCCE-EEECCcchhHHHHhc--CceE
Confidence 468999999999999999999999999999998766654332 22 1121 134444133444444 7999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||+ +|.
T Consensus 193 vid-~g~ 198 (302)
T 1iz0_A 193 VLE-VRG 198 (302)
T ss_dssp EEE-CSC
T ss_pred EEE-CCH
Confidence 999 873
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0025 Score=57.00 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=50.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~ 79 (347)
+.+|+|+||+|.+|...++.+...|++|+++.+++.+.+. +.++ +...+ .|..+ .+.+.++ ...++
T Consensus 151 g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~----~~~l------Ga~~v-i~~~~~~~~~~~~~-~~~g~ 218 (346)
T 3fbg_A 151 GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEW----TKKM------GADIV-LNHKESLLNQFKTQ-GIELV 218 (346)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHH----HHHH------TCSEE-ECTTSCHHHHHHHH-TCCCE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHhc------CCcEE-EECCccHHHHHHHh-CCCCc
Confidence 3689999999999999999999999999999876554332 2232 11111 12222 2233333 33369
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||+++|.
T Consensus 219 Dvv~d~~g~ 227 (346)
T 3fbg_A 219 DYVFCTFNT 227 (346)
T ss_dssp EEEEESSCH
T ss_pred cEEEECCCc
Confidence 999999874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0052 Score=55.06 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=49.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecC--CCCHHHHHHHHc---c
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD--LRDKAALEVVFA---G 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D--l~d~~~~~~~~~---~ 76 (347)
+.+|+|+|+ |.+|...++.+...|++|+++++++.+.+. +.++ +.. ..+..+ -...+.+.+... .
T Consensus 169 g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~----~~~l----Ga~-~~~~~~~~~~~~~~i~~~~~~~~g 238 (352)
T 1e3j_A 169 GTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEV----AKNC----GAD-VTLVVDPAKEEESSIIERIRSAIG 238 (352)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHT----TCS-EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHH----HHHh----CCC-EEEcCcccccHHHHHHHHhccccC
Confidence 368999996 999999999999999999888876554432 2222 111 122111 122344555443 2
Q ss_pred CCCcEEEEcccc
Q 040584 77 TKFDAVIHFAGL 88 (347)
Q Consensus 77 ~~~d~vih~a~~ 88 (347)
.++|+||+++|.
T Consensus 239 ~g~D~vid~~g~ 250 (352)
T 1e3j_A 239 DLPNVTIDCSGN 250 (352)
T ss_dssp SCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 369999999873
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=56.96 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=32.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
|+++|.|+||.|.+|..++..|.+.|++|++++|++
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 567899999999999999999999999999998764
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00071 Score=59.22 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|+|+|.|+| .|.+|+.+++.|.+.|++|++.+|++.+.+... .. ++.. ..+ +.++++ ++|
T Consensus 4 M~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~----~~------g~~~----~~~---~~~~~~--~~D 63 (299)
T 1vpd_A 4 MTMKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI----AA------GAET----AST---AKAIAE--QCD 63 (299)
T ss_dssp --CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HT------TCEE----CSS---HHHHHH--HCS
T ss_pred ccceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH----HC------CCee----cCC---HHHHHh--CCC
Confidence 678999999 799999999999999999999988755433222 11 2221 122 344555 489
Q ss_pred EEEEccc
Q 040584 81 AVIHFAG 87 (347)
Q Consensus 81 ~vih~a~ 87 (347)
+||.+..
T Consensus 64 ~vi~~v~ 70 (299)
T 1vpd_A 64 VIITMLP 70 (299)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9999864
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.012 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=28.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEE-EeCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVV-VDNLD 36 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~-~~r~~ 36 (347)
|++|.|+|+ |.+|+.+++.+.+.++++.+ ++|..
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~ 37 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP 37 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc
Confidence 589999999 99999999999998777765 55544
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00071 Score=57.54 Aligned_cols=67 Identities=22% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC----eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY----KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~----~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
|+|+|.|+| .|.+|+.+++.|++.|+ +|++.+|++.+.+...+.+ ++.. ..+ ..++++
T Consensus 1 M~~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---------g~~~----~~~---~~e~~~- 62 (247)
T 3gt0_A 1 MDKQIGFIG-CGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---------GLTT----TTD---NNEVAK- 62 (247)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---------CCEE----CSC---HHHHHH-
T ss_pred CCCeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---------CCEE----eCC---hHHHHH-
Confidence 789999999 99999999999999998 9999998766544332221 2221 122 344555
Q ss_pred CCCcEEEEcc
Q 040584 77 TKFDAVIHFA 86 (347)
Q Consensus 77 ~~~d~vih~a 86 (347)
++|+||-+.
T Consensus 63 -~aDvVilav 71 (247)
T 3gt0_A 63 -NADILILSI 71 (247)
T ss_dssp -HCSEEEECS
T ss_pred -hCCEEEEEe
Confidence 489999986
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00054 Score=61.03 Aligned_cols=94 Identities=12% Similarity=0.207 Sum_probs=57.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC---CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG---YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|++|.|.||+|.+|+.+++.|++++ .+++++....+.... +. + .+..+.+...| ++ .+. +
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~----~~-~---~~~~i~~~~~~---~~----~~~--~ 65 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKT----YR-F---NGKTVRVQNVE---EF----DWS--Q 65 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCE----EE-E---TTEEEEEEEGG---GC----CGG--G
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCc----ee-e---cCceeEEecCC---hH----Hhc--C
Confidence 5899999999999999999999873 567766532211000 00 0 01122222122 11 233 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSAT 131 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~ 131 (347)
+|+||-|.+... +...+..+.+.|+ ++|-.|+..
T Consensus 66 vDvVf~a~g~~~------------------s~~~a~~~~~~G~-~vId~s~~~ 99 (336)
T 2r00_A 66 VHIALFSAGGEL------------------SAKWAPIAAEAGV-VVIDNTSHF 99 (336)
T ss_dssp CSEEEECSCHHH------------------HHHHHHHHHHTTC-EEEECSSTT
T ss_pred CCEEEECCCchH------------------HHHHHHHHHHcCC-EEEEcCCcc
Confidence 899999976421 3356666777777 788888874
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.015 Score=52.22 Aligned_cols=119 Identities=15% Similarity=0.013 Sum_probs=71.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-----eEEEEeCCCchhHH-HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-----KTVVVDNLDNASEI-AVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-----~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
+||.|+||+|.+|.+++..|+..+. ++.+.+...+.... .....-.+.....+-...+.. .+ ...+.++
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i--~~--~~y~~~~- 107 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--GI--DPYEVFE- 107 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--ES--CHHHHTT-
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE--ec--CCHHHhC-
Confidence 6899999999999999999998763 26554433333221 111122222111111111111 11 1245566
Q ss_pred CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-C-CCeEEEecc
Q 040584 77 TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-G-CKNLVFSSS 129 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~-~~~iv~~SS 129 (347)
++|+||-.||.... ......+.++.|+.-.+.+.+.+.+. + -..++.+|.
T Consensus 108 -daDvVVitag~prk--pG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 108 -DVDWALLIGAKPRG--PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp -TCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred -CCCEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 69999999996432 22345678899999999999988875 3 236776665
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=51.59 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=66.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHH-------HHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAK-------VKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
|++|-++| .|-.|..+++.|++.||+|++.+|++++.+.+.+. ..+. -...+++..-+.|.+.+++++
T Consensus 3 M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~----~~~~dvv~~~l~~~~~v~~V~ 77 (300)
T 3obb_A 3 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA----VQGADVVISMLPASQHVEGLY 77 (300)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHH----HTTCSEEEECCSCHHHHHHHH
T ss_pred cCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHH----HhcCCceeecCCchHHHHHHH
Confidence 57899999 99999999999999999999999987665543221 0011 123445555667777777666
Q ss_pred ccC--------CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEE
Q 040584 75 AGT--------KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLV 125 (347)
Q Consensus 75 ~~~--------~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv 125 (347)
... .=++||.+... ....++.+.+.+++.|+ ++|
T Consensus 78 ~~~~g~~~~~~~g~iiId~sT~----------------~p~~~~~~a~~~~~~G~-~~l 119 (300)
T 3obb_A 78 LDDDGLLAHIAPGTLVLECSTI----------------APTSARKIHAAARERGL-AML 119 (300)
T ss_dssp HSSSSSTTSCCC-CEEEECSCC----------------CHHHHHHHHHHHHTTTC-EEE
T ss_pred hchhhhhhcCCCCCEEEECCCC----------------CHHHHHHHHHHHHHcCC-EEE
Confidence 421 11345555422 23345677778877776 555
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.002 Score=58.19 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=53.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+.+|+|+|+ |.+|..+++.+...|++|+++++++.+.+...+ ++ +... ..|..+.+.+.++.. ++|+
T Consensus 188 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~---~l------Ga~~-v~~~~~~~~~~~~~~--~~D~ 254 (366)
T 1yqd_A 188 GKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALK---NF------GADS-FLVSRDQEQMQAAAG--TLDG 254 (366)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHH---TS------CCSE-EEETTCHHHHHHTTT--CEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hc------CCce-EEeccCHHHHHHhhC--CCCE
Confidence 368999996 999999999999999999999987665443221 11 1221 235566666666554 6999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||+++|.
T Consensus 255 vid~~g~ 261 (366)
T 1yqd_A 255 IIDTVSA 261 (366)
T ss_dssp EEECCSS
T ss_pred EEECCCc
Confidence 9999974
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=59.93 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=53.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+|+ |.+|+.+++.|...|++|++++|++.+.+... +.. +..+. .+..+..++.+++. ++|+
T Consensus 168 g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~----~~~---g~~~~---~~~~~~~~l~~~l~--~aDv 234 (377)
T 2vhw_A 168 PADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLD----AEF---CGRIH---TRYSSAYELEGAVK--RADL 234 (377)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HHT---TTSSE---EEECCHHHHHHHHH--HCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH----Hhc---CCeeE---eccCCHHHHHHHHc--CCCE
Confidence 478999997 99999999999999999999998765443222 211 11211 22345667777777 5899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
||.+++..
T Consensus 235 Vi~~~~~p 242 (377)
T 2vhw_A 235 VIGAVLVP 242 (377)
T ss_dssp EEECCCCT
T ss_pred EEECCCcC
Confidence 99998753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0054 Score=55.19 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=51.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH----cc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF----AG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----~~ 76 (347)
+.+|||+|+ |.+|...++.+...|.+ |+++++++.+.+.. .++ . ..+..+..|-.+.+++.+.+ ..
T Consensus 180 g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----~~l-~---~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 180 GDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFA----KEI-C---PEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHH-C---TTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHh-c---hhcccccccccchHHHHHHHHHHhCC
Confidence 368999998 99999999999999997 88888765554332 222 1 12333334434444444333 23
Q ss_pred CCCcEEEEcccc
Q 040584 77 TKFDAVIHFAGL 88 (347)
Q Consensus 77 ~~~d~vih~a~~ 88 (347)
.++|+||.++|.
T Consensus 251 ~g~Dvvid~~g~ 262 (363)
T 3m6i_A 251 IEPAVALECTGV 262 (363)
T ss_dssp CCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 379999999873
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00068 Score=56.60 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=35.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEE-EeCCCchhHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVV-VDNLDNASEIAV 43 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~-~~r~~~~~~~~~ 43 (347)
||+|.|+| +|.+|..+++.|.+.|++|++ .+|++.+.+...
T Consensus 23 mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~ 64 (220)
T 4huj_A 23 MTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPASLSSVT 64 (220)
T ss_dssp SCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHH
Confidence 57999999 999999999999999999998 788776655443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00049 Score=59.48 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=49.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++|+|+ |.+|+.++..|++.|++|++..|+.++.+...+.+... . .+.. .|+ +++. + .++|+
T Consensus 119 ~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~----~-~~~~--~~~---~~~~---~-~~~Di 183 (272)
T 1p77_A 119 NQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY----G-NIQA--VSM---DSIP---L-QTYDL 183 (272)
T ss_dssp TCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG----S-CEEE--EEG---GGCC---C-SCCSE
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc----C-CeEE--eeH---HHhc---c-CCCCE
Confidence 478999997 78999999999999999999999876655554443221 1 2222 222 1111 1 15899
Q ss_pred EEEcccccc
Q 040584 82 VIHFAGLKA 90 (347)
Q Consensus 82 vih~a~~~~ 90 (347)
||++++...
T Consensus 184 vIn~t~~~~ 192 (272)
T 1p77_A 184 VINATSAGL 192 (272)
T ss_dssp EEECCCC--
T ss_pred EEECCCCCC
Confidence 999998643
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0022 Score=59.41 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=32.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|+|.|+| +|.+|..++..|++.|++|++++|++.+.+
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~~~ 37 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKID 37 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 5899999 899999999999999999999998765544
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0032 Score=57.00 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=48.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+.+|+|+||+|.+|..+++.+...|.+|+++.+ +.+.+ .+.++ +... ..|..+.+..+++.+..++|+
T Consensus 184 g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~----~~~~l------Ga~~-v~~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 184 GKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASE----LVRKL------GADD-VIDYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHH----HHHHT------TCSE-EEETTSSCHHHHHHTSCCBSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHH----HHHHc------CCCE-EEECCchHHHHHHhhcCCCCE
Confidence 368999999999999999999999999988874 33322 22222 1111 124333332233333236999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||+++|.
T Consensus 252 vid~~g~ 258 (375)
T 2vn8_A 252 ILDNVGG 258 (375)
T ss_dssp EEESSCT
T ss_pred EEECCCC
Confidence 9999874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=57.64 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=49.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC---chhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHHHcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD---NASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~ 76 (347)
+++|+|+|| |.+|..+++.+...|++|+++++++ .+.+ .+.++ +...+ | .+ .+.+.+ ..
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~----~~~~~------ga~~v--~-~~~~~~~~~~-~~- 244 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQT----VIEET------KTNYY--N-SSNGYDKLKD-SV- 244 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHH----HHHHH------TCEEE--E-CTTCSHHHHH-HH-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHH----HHHHh------CCcee--c-hHHHHHHHHH-hC-
Confidence 478999999 9999999999999999999999876 4432 22222 23333 4 33 223333 22
Q ss_pred CCCcEEEEcccc
Q 040584 77 TKFDAVIHFAGL 88 (347)
Q Consensus 77 ~~~d~vih~a~~ 88 (347)
.++|+||+++|.
T Consensus 245 ~~~d~vid~~g~ 256 (366)
T 2cdc_A 245 GKFDVIIDATGA 256 (366)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 269999999974
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.009 Score=53.52 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=67.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+.+++.|+..|. +++++++.. .+.+...+.+..+.+ .-+++.+.
T Consensus 118 ~~~VlvvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~v~v~~~~ 194 (353)
T 3h5n_A 118 NAKVVILG-CGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNS--EISVSEIA 194 (353)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT--TSEEEEEE
T ss_pred CCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCC--CCeEEEee
Confidence 36899999 58899999999999996 667776542 233444555555432 23455666
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhh-HHHHHHHHHHHcCCCeEEEeccc
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLT-GTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~-~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
.++.+...+.. ++ ++|+||.+.. |.. .-..+-++|.+.++ .+|+.+..
T Consensus 195 ~~i~~~~~~~~-~~--~~DlVvd~~D-----------------n~~~~r~~ln~~c~~~~~-p~i~~~~~ 243 (353)
T 3h5n_A 195 LNINDYTDLHK-VP--EADIWVVSAD-----------------HPFNLINWVNKYCVRANQ-PYINAGYV 243 (353)
T ss_dssp CCCCSGGGGGG-SC--CCSEEEECCC-----------------CSTTHHHHHHHHHHHTTC-CEEEEEEE
T ss_pred cccCchhhhhH-hc--cCCEEEEecC-----------------ChHHHHHHHHHHHHHhCC-CEEEEEEe
Confidence 77766554555 65 6899999852 111 12245567888876 57766543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.002 Score=57.17 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=47.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH-HHHHHHccCCCcEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA-ALEVVFAGTKFDAV 82 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~~d~v 82 (347)
+|+|+||+|.+|..+++.+...|++|+++.+++.+.+.. .++ +...+ .|..+.+ ...+.+...++|+|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~----~~l------Ga~~~-i~~~~~~~~~~~~~~~~~~d~v 220 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL----RVL------GAKEV-LAREDVMAERIRPLDKQRWAAA 220 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH----HHT------TCSEE-EECC---------CCSCCEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHc------CCcEE-EecCCcHHHHHHHhcCCcccEE
Confidence 799999999999999999999999999999886655433 222 11111 2333321 11112222269999
Q ss_pred EEcccc
Q 040584 83 IHFAGL 88 (347)
Q Consensus 83 ih~a~~ 88 (347)
|+++|.
T Consensus 221 id~~g~ 226 (328)
T 1xa0_A 221 VDPVGG 226 (328)
T ss_dssp EECSTT
T ss_pred EECCcH
Confidence 999873
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.02 Score=50.58 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=63.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEE--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTF-- 59 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~-- 59 (347)
..+|+|.| .|.+|+++++.|+..|. +++++++.. .+.+...+.+..+. +.+.+
T Consensus 34 ~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~in----P~v~v~~ 108 (340)
T 3rui_A 34 NTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF----PLMDATG 108 (340)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHC----TTCEEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhC----CCCEEEE
Confidence 36899999 78899999999999996 556665532 33444455555552 34444
Q ss_pred EecCCC--------------CHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEE
Q 040584 60 HKLDLR--------------DKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLV 125 (347)
Q Consensus 60 ~~~Dl~--------------d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv 125 (347)
+..++. +.+.+.++++ ++|+||.+..- ...-..+-++|.+.+. .+|
T Consensus 109 ~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~--~~DlVvd~tDn-----------------~~tR~lin~~c~~~~~-plI 168 (340)
T 3rui_A 109 VKLSIPMIGHKLVNEEAQHKDFDRLRALIK--EHDIIFLLVDS-----------------RESRWLPSLLSNIENK-TVI 168 (340)
T ss_dssp ECCCCCCTTSCCSCHHHHHHHHHHHHHHHH--HCSEEEECCSS-----------------TGGGHHHHHHHHHTTC-EEE
T ss_pred EeccccccCcccchhhhhcCCHHHHHhhhc--cCCEEEecCCC-----------------HHHHHHHHHHHHHcCC-cEE
Confidence 433331 2345667777 58999999631 1111245567777765 565
Q ss_pred Ee
Q 040584 126 FS 127 (347)
Q Consensus 126 ~~ 127 (347)
..
T Consensus 169 ~a 170 (340)
T 3rui_A 169 NA 170 (340)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.001 Score=63.13 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=45.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH-HHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV-VFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~~~d~ 81 (347)
++++|||| |.+|++++..|++.|++|+++.|+..+.+...+.+ +..+ +. +.| +.+ ... .+|+
T Consensus 365 k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~-------~~~~--~~--~~d---l~~~~~~--~~Di 427 (523)
T 2o7s_A 365 KTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAI-------GGKA--LS--LTD---LDNYHPE--DGMV 427 (523)
T ss_dssp -CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHT-------TC-C--EE--TTT---TTTC--C--CSEE
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCce--ee--HHH---hhhcccc--CceE
Confidence 57999998 79999999999999999999998765554433322 1111 11 112 111 111 4899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|||++|..
T Consensus 428 lVN~agvg 435 (523)
T 2o7s_A 428 LANTTSMG 435 (523)
T ss_dssp EEECSSTT
T ss_pred EEECCCCC
Confidence 99999864
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0046 Score=47.39 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=55.1
Q ss_pred ceEEEEcCC---CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGV---GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGat---G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++|.|.|+| |.+|..+++.|++.||+|+.++++.... .+... ..++.++.+ .+
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i---------------~G~~~-------~~s~~el~~--~v 70 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI---------------EGLKC-------YRSVRELPK--DV 70 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------------TTEEC-------BSSGGGSCT--TC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE---------------CCeee-------cCCHHHhCC--CC
Confidence 689999997 8999999999999999988876543211 02221 122223333 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
|+++-+... .....+++.|.+.+++.++..++
T Consensus 71 Dlvii~vp~------------------~~v~~v~~~~~~~g~~~i~~~~~ 102 (138)
T 1y81_A 71 DVIVFVVPP------------------KVGLQVAKEAVEAGFKKLWFQPG 102 (138)
T ss_dssp CEEEECSCH------------------HHHHHHHHHHHHTTCCEEEECTT
T ss_pred CEEEEEeCH------------------HHHHHHHHHHHHcCCCEEEEcCc
Confidence 999888632 11334566676778877665553
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0089 Score=53.37 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=69.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCC-------------------CchhHHHHHHHHHhhccCCCCeEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNL-------------------DNASEIAVAKVKELAGYQGNNMTFHK 61 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (347)
..+|+|.| .|.+|+.+++.|...|. .+++++.. ..+.+...+.+.++.+ .-.+..+.
T Consensus 36 ~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp--~v~v~~~~ 112 (346)
T 1y8q_A 36 ASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNP--MVDVKVDT 112 (346)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCT--TSEEEEEC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCC--CeEEEEEe
Confidence 36899999 68899999999999997 66676421 1234444555555422 22344555
Q ss_pred cCCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 62 ~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
.++.+ ....++. ++|+||.+.. |...-..+-++|++.++ .+|..++.+.+|.
T Consensus 113 ~~~~~--~~~~~~~--~~dvVv~~~d-----------------~~~~r~~ln~~~~~~~i-p~i~~~~~G~~G~ 164 (346)
T 1y8q_A 113 EDIEK--KPESFFT--QFDAVCLTCC-----------------SRDVIVKVDQICHKNSI-KFFTGDVFGYHGY 164 (346)
T ss_dssp SCGGG--CCHHHHT--TCSEEEEESC-----------------CHHHHHHHHHHHHHTTC-EEEEEEEEBTEEE
T ss_pred cccCc--chHHHhc--CCCEEEEcCC-----------------CHHHHHHHHHHHHHcCC-CEEEEeecccEEE
Confidence 55433 2345666 5899998742 23333456778888775 7888877776653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0055 Score=55.21 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=47.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC--HHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD--KAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~ 79 (347)
.+|+|+||+|.+|...++.+.. .|.+|+++++++.+.+. +.++ +...+ .|..+ .+.+.++ ...++
T Consensus 173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~----~~~l------Gad~v-i~~~~~~~~~v~~~-~~~g~ 240 (363)
T 4dvj_A 173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEW----VKSL------GAHHV-IDHSKPLAAEVAAL-GLGAP 240 (363)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHH----HHHT------TCSEE-ECTTSCHHHHHHTT-CSCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----HHHc------CCCEE-EeCCCCHHHHHHHh-cCCCc
Confidence 5799999999999999988876 68999999876554432 2232 12222 23322 1122222 22369
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||.++|.
T Consensus 241 Dvvid~~g~ 249 (363)
T 4dvj_A 241 AFVFSTTHT 249 (363)
T ss_dssp EEEEECSCH
T ss_pred eEEEECCCc
Confidence 999999874
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.003 Score=55.21 Aligned_cols=39 Identities=31% Similarity=0.527 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|.+||.++| .|..|..+++.|++.||+|++.+|++.+.+
T Consensus 4 Ms~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~ 42 (297)
T 4gbj_A 4 MSEKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAE 42 (297)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------C
T ss_pred CCCcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 778999999 899999999999999999999998876654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0051 Score=57.24 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=32.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
+.+|+|+||+|.+|...++.+...|.+|+++.+++.+.
T Consensus 229 g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~ 266 (456)
T 3krt_A 229 GDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA 266 (456)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHH
Confidence 36899999999999999999999999999988755443
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.027 Score=52.40 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=71.2
Q ss_pred CceEEEEcCCC-cccHHHHHHHHhC----CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 2 AKNILVIGGVG-YIGSHTVLQLLLG----GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG-~iG~~l~~~L~~~----g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
+|||.|+||.+ ..|.+++..|++. |++|.+.++.....+..................+... .++.++++
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~t-----tD~~eal~- 76 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-----MNLDDVII- 76 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHHT-
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEE-----CCHHHHhC-
Confidence 47999999765 4688889999864 8999999998766554433333322111112222221 23456677
Q ss_pred CCCcEEEEccccccC-------------Cccc--cC---------cchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 77 TKFDAVIHFAGLKAV-------------GESV--QK---------PLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 77 ~~~d~vih~a~~~~~-------------~~~~--~~---------~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
++|+||..++.... +... ++ -.....-|+.....+++.+++....-++...|
T Consensus 77 -dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~T 152 (480)
T 1obb_A 77 -DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 152 (480)
T ss_dssp -TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred -CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999974211 1100 00 01123347778888888888876443443333
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0047 Score=55.37 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=25.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~ 33 (347)
++|.|.||||++|..|++.|.+.. .++..+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~ 39 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLA 39 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCceEEEEE
Confidence 589999999999999999887754 4666554
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0047 Score=55.37 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=25.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~ 33 (347)
++|.|.||||++|..|++.|.+.. .++..+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~ 39 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLA 39 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCceEEEEE
Confidence 589999999999999999887754 4666554
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0015 Score=58.58 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=27.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVD 33 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~ 33 (347)
+++|.|.||+|++|+.+++.|++.. .++.++.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 4689999999999999999998764 5777775
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0018 Score=56.29 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=48.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||+|.|+| .|.+|+.+++.|++.||+|++.+|++.+.+...+. ++.. ..++.++++ ++|+
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----------g~~~-------~~~~~~~~~--~adv 60 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL----------GARQ-------ASSPAEVCA--ACDI 60 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH----------TCEE-------CSCHHHHHH--HCSE
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC----------CCee-------cCCHHHHHH--cCCE
Confidence 36899998 89999999999999999999999987766543322 2221 123445555 4799
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||-+..
T Consensus 61 vi~~v~ 66 (287)
T 3pdu_A 61 TIAMLA 66 (287)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 988863
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0051 Score=57.19 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=70.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-----CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-----GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-----g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
+||.|+||.+..|..++..|+++ +.+|.+.++...+.+........+.........+... .++.++++
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t-----~D~~eal~-- 101 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT-- 101 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS--
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEE-----CCHHHHHc--
Confidence 48999998776688899889888 6789999998766544332222221111122233221 23556777
Q ss_pred CCcEEEEccccccCCccccCc------------------chhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 78 KFDAVIHFAGLKAVGESVQKP------------------LPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~------------------~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
++|+||..++.........+. .....-|+.....+++.+++.... .+|.+|.
T Consensus 102 ~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TN 172 (472)
T 1u8x_X 102 DVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSN 172 (472)
T ss_dssp SCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 699999999864321100000 111333667777888888887544 4554443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0095 Score=54.67 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=32.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
+|+|.|+| +|++|..++..|++ |++|+++++++.+.+.
T Consensus 36 ~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~~~~~v~~ 73 (432)
T 3pid_A 36 FMKITISG-TGYVGLSNGVLIAQ-NHEVVALDIVQAKVDM 73 (432)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECSCHHHHHH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEecCHHHhhH
Confidence 36999999 79999999999988 9999999988665544
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0064 Score=56.26 Aligned_cols=121 Identities=17% Similarity=0.069 Sum_probs=72.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-----CCeEEEEeCCC--chhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-----GYKTVVVDNLD--NASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-----g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
++||.|+||.+..|..|+..|+++ +.+|.+.++.. .+.+........+.........+... .++.+++
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t-----~D~~eal 81 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT-----LDRRRAL 81 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEe-----CCHHHHh
Confidence 368999998777799999999984 67899999877 55444322222221111223333321 2355677
Q ss_pred ccCCCcEEEEccccccCCccccC---cc---------------hhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQK---PL---------------PYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~---~~---------------~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+ ++|+||..++.........+ +. ....-|+.....+++.+++.... .+|.+|.
T Consensus 82 ~--gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tN 153 (450)
T 1s6y_A 82 D--GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTN 153 (450)
T ss_dssp T--TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred C--CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7 69999999986432110000 00 11334667777888888887544 4555544
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0018 Score=56.93 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=47.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|.|+| .|.+|..+++.|++.|++|++.+|++.+.+...+. ++.. ..++.++++ .+|+
T Consensus 9 ~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~----------g~~~-------~~~~~e~~~--~aDv 68 (306)
T 3l6d_A 9 EFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA----------GAHL-------CESVKAALS--ASPA 68 (306)
T ss_dssp SCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TCEE-------CSSHHHHHH--HSSE
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC----------CCee-------cCCHHHHHh--cCCE
Confidence 46899998 89999999999999999999998876654433221 2211 123455666 4899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||-+..
T Consensus 69 Vi~~vp 74 (306)
T 3l6d_A 69 TIFVLL 74 (306)
T ss_dssp EEECCS
T ss_pred EEEEeC
Confidence 998864
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0079 Score=55.51 Aligned_cols=73 Identities=27% Similarity=0.301 Sum_probs=55.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|+|+|+ |.+|..+++.+.+.|++|++++..+..... . . --..+..|..|.+.+.++++..++|.
T Consensus 19 ~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~--~----~------ad~~~~~~~~d~~~l~~~~~~~~~d~ 85 (433)
T 2dwc_A 19 AQKILLLGS-GELGKEIAIEAQRLGVEVVAVDRYANAPAM--Q----V------AHRSYVGNMMDKDFLWSVVEREKPDA 85 (433)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCEEEEEESSTTCHHH--H----H------SSEEEESCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh--h----h------cceEEECCCCCHHHHHHHHHHcCCCE
Confidence 579999996 789999999999999999998866543211 1 1 11356678889988888886557999
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
|+....
T Consensus 86 V~~~~e 91 (433)
T 2dwc_A 86 IIPEIE 91 (433)
T ss_dssp EEECSS
T ss_pred EEECcc
Confidence 987643
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=57.79 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=34.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
+|+|.|+| .|.+|+.+++.|++.||+|++.+|++.+.+.
T Consensus 7 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~ 45 (303)
T 3g0o_A 7 DFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQACAN 45 (303)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 47899998 8999999999999999999999987655443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0023 Score=55.99 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=35.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA 42 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~ 42 (347)
+|+|.|+| .|.+|..+++.|++.||+|++.+|++.+.+..
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~ 54 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPL 54 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHH
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 46899999 89999999999999999999999988776543
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0077 Score=55.39 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=52.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+| .|.+|+.+++.+.+.|++|++++..+...... + .-..+..|..|.+.+.++++ ++|+
T Consensus 35 ~~~IlIlG-~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~---~---------ad~~~~~~~~d~~~l~~~a~--~~D~ 99 (419)
T 4e4t_A 35 GAWLGMVG-GGQLGRMFCFAAQSMGYRVAVLDPDPASPAGA---V---------ADRHLRAAYDDEAALAELAG--LCEA 99 (419)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCTTCHHHH---H---------SSEEECCCTTCHHHHHHHHH--HCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCcCchhh---h---------CCEEEECCcCCHHHHHHHHh--cCCE
Confidence 36899999 68999999999999999999997654432211 1 11356688999999999997 6999
Q ss_pred EEE
Q 040584 82 VIH 84 (347)
Q Consensus 82 vih 84 (347)
|+.
T Consensus 100 V~~ 102 (419)
T 4e4t_A 100 VST 102 (419)
T ss_dssp EEE
T ss_pred EEE
Confidence 983
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0035 Score=55.49 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=47.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|.|+| .|.+|..+++.|++.|++|++.+|++.+.+...+ .++.. ..++.++++ .+|+
T Consensus 31 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~----------~g~~~-------~~~~~e~~~--~aDv 90 (320)
T 4dll_A 31 ARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAA----------LGATI-------HEQARAAAR--DADI 90 (320)
T ss_dssp CSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----------TTCEE-------ESSHHHHHT--TCSE
T ss_pred CCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH----------CCCEe-------eCCHHHHHh--cCCE
Confidence 46999998 7999999999999999999999987655433221 12222 123556666 5899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||-+..
T Consensus 91 Vi~~vp 96 (320)
T 4dll_A 91 VVSMLE 96 (320)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 998863
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0038 Score=54.92 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=47.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||+|.|+| .|.+|..+++.|++.||+|++.+|++.+.+...+. ++.. ..++.++++ .+|+
T Consensus 21 m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----------g~~~-------~~~~~~~~~--~aDv 80 (310)
T 3doj_A 21 MMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEH----------GASV-------CESPAEVIK--KCKY 80 (310)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT----------TCEE-------CSSHHHHHH--HCSE
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC----------CCeE-------cCCHHHHHH--hCCE
Confidence 47899998 89999999999999999999999987765543321 2221 123445555 4798
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
||-+.
T Consensus 81 vi~~v 85 (310)
T 3doj_A 81 TIAML 85 (310)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 88876
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0039 Score=57.03 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=49.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+|+ |.+|+.+++.|...|. +|++++|+..+.....+.+ +... .+ .+++.+++. ++|
T Consensus 167 g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~---------g~~~--~~---~~~l~~~l~--~aD 229 (404)
T 1gpj_A 167 DKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL---------GGEA--VR---FDELVDHLA--RSD 229 (404)
T ss_dssp TCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH---------TCEE--CC---GGGHHHHHH--TCS
T ss_pred CCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc---------CCce--ec---HHhHHHHhc--CCC
Confidence 478999996 9999999999999998 8999988765543322222 1222 12 234666666 589
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.+.
T Consensus 230 vVi~at~~ 237 (404)
T 1gpj_A 230 VVVSATAA 237 (404)
T ss_dssp EEEECCSS
T ss_pred EEEEccCC
Confidence 99999764
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.013 Score=52.72 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred CceEEEEcCCCcccHHHHHH-HHhCCC---eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQ-LLLGGY---KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~-L~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|++|.|.||+|++|+.|++. |.++++ +++.+...+ .... +..+. +..+ ...|..+.+. +.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~----v~~~~---g~~i--~~~~~~~~~~----~~-- 64 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQA----APSFG---GTTG--TLQDAFDLEA----LK-- 64 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSB----CCGGG---TCCC--BCEETTCHHH----HH--
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCC----ccccC---CCce--EEEecCChHH----hc--
Confidence 37899999999999999994 554554 445554322 1110 00000 1112 2223334443 34
Q ss_pred CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccc
Q 040584 78 KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSA 130 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~ 130 (347)
++|+||.+.+.. .+..++..+.+.|++ .+|=.||.
T Consensus 65 ~~DvVf~a~g~~------------------~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 65 ALDIIVTCQGGD------------------YTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp TCSEEEECSCHH------------------HHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCCEEEECCCch------------------hHHHHHHHHHHCCCCEEEEcCChh
Confidence 599999998632 233566777777874 44444443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0078 Score=52.04 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=50.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++++|+|+ |.+|+.++..|.+.|+ +|+++.|+..+.+.+.+.+... ..+..... .+ + .. ++|
T Consensus 126 ~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~-----~~~~~~~~--~~---l---~~--~aD 189 (281)
T 3o8q_A 126 GATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY-----GEVKAQAF--EQ---L---KQ--SYD 189 (281)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGG-----SCEEEEEG--GG---C---CS--CEE
T ss_pred CCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhcc-----CCeeEeeH--HH---h---cC--CCC
Confidence 478999996 7899999999999996 9999999877666555554322 12333322 11 1 12 589
Q ss_pred EEEEccccc
Q 040584 81 AVIHFAGLK 89 (347)
Q Consensus 81 ~vih~a~~~ 89 (347)
+||++....
T Consensus 190 iIInaTp~g 198 (281)
T 3o8q_A 190 VIINSTSAS 198 (281)
T ss_dssp EEEECSCCC
T ss_pred EEEEcCcCC
Confidence 999997654
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.011 Score=50.54 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=49.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++++|+|+ |..|+.++..|.+.|.+|+++.|+.++.+.+. .+ ++... ++.+. . .+|+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~---------~~~~~--~~~~l-------~--~~Di 175 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL---------GCDCF--MEPPK-------S--AFDL 175 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH---------TCEEE--SSCCS-------S--CCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC---------CCeEe--cHHHh-------c--cCCE
Confidence 478999995 99999999999999999999999988776544 32 12332 22221 1 4899
Q ss_pred EEEcccccc
Q 040584 82 VIHFAGLKA 90 (347)
Q Consensus 82 vih~a~~~~ 90 (347)
||++.....
T Consensus 176 VInaTp~Gm 184 (269)
T 3phh_A 176 IINATSASL 184 (269)
T ss_dssp EEECCTTCC
T ss_pred EEEcccCCC
Confidence 999976543
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0061 Score=55.22 Aligned_cols=68 Identities=25% Similarity=0.294 Sum_probs=52.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+| .|.+|+.+++.+.+.|++|++++..+..... .. --..+..|..|.+.+.++++ .+|+
T Consensus 12 ~~~IlIlG-~G~lg~~la~aa~~lG~~viv~d~~~~~p~~------~~------ad~~~~~~~~d~~~l~~~~~--~~dv 76 (377)
T 3orq_A 12 GATIGIIG-GGQLGKMMAQSAQKMGYKVVVLDPSEDCPCR------YV------AHEFIQAKYDDEKALNQLGQ--KCDV 76 (377)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTG------GG------SSEEEECCTTCHHHHHHHHH--HCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCChhh------hh------CCEEEECCCCCHHHHHHHHH--hCCc
Confidence 46899999 7889999999999999999999875543210 00 12456789999999999988 4888
Q ss_pred EEE
Q 040584 82 VIH 84 (347)
Q Consensus 82 vih 84 (347)
|..
T Consensus 77 i~~ 79 (377)
T 3orq_A 77 ITY 79 (377)
T ss_dssp EEE
T ss_pred cee
Confidence 744
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.47 E-value=0.015 Score=51.51 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=27.3
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeC
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDN 34 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r 34 (347)
|| ++|.|.|+ |.||+.+++.|.++ +.+|.++..
T Consensus 1 mm~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d 35 (337)
T 3e5r_O 1 MGKIKIGINGF-GRIGRLVARVALQSEDVELVAVND 35 (337)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred CCceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEEC
Confidence 55 69999999 99999999999986 578877753
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0084 Score=53.98 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=50.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d 80 (347)
+.+|+|+| +|.+|...++.+...|++|+++++++.+.+. +.++ +.. ..+.-+-.+ .+.+.++....++|
T Consensus 190 g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~----~~~l----Ga~-~vi~~~~~~~~~~v~~~~~g~g~D 259 (363)
T 3uog_A 190 GDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDR----AFAL----GAD-HGINRLEEDWVERVYALTGDRGAD 259 (363)
T ss_dssp TCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHH----TCS-EEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHH----HHHc----CCC-EEEcCCcccHHHHHHHHhCCCCce
Confidence 36899999 8999999999999999999999887554433 2222 111 122211112 22344444444799
Q ss_pred EEEEccc
Q 040584 81 AVIHFAG 87 (347)
Q Consensus 81 ~vih~a~ 87 (347)
+||+++|
T Consensus 260 ~vid~~g 266 (363)
T 3uog_A 260 HILEIAG 266 (363)
T ss_dssp EEEEETT
T ss_pred EEEECCC
Confidence 9999998
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.003 Score=54.94 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=48.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|.|+| .|.+|+.+++.|++.||+|++.+|++.+.+...+. ++.. ..++.++++ ++|+
T Consensus 1 s~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----------g~~~-------~~~~~~~~~--~aDv 60 (287)
T 3pef_A 1 SQKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL----------GAER-------AATPCEVVE--SCPV 60 (287)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT----------TCEE-------CSSHHHHHH--HCSE
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC----------CCee-------cCCHHHHHh--cCCE
Confidence 37899999 79999999999999999999999987766543321 2221 123455666 4799
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||-+..
T Consensus 61 vi~~vp 66 (287)
T 3pef_A 61 TFAMLA 66 (287)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 998853
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0086 Score=51.74 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=56.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+++|.|.|++|.+|+.+++.+.+. +.++.++ +|+.+... -..+..+.+... .++.-.+++.+++. ++
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~--G~d~gel~G~~~-------~gv~v~~dl~~ll~--~a 89 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV--DKDASILIGSDF-------LGVRITDDPESAFS--NT 89 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT--TSBGGGGTTCSC-------CSCBCBSCHHHHTT--SC
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--ccchHHhhccCc-------CCceeeCCHHHHhc--CC
Confidence 368999999999999999999865 7887765 55432110 000001111001 11111234566666 59
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
|+||.++.+ ..+...++.|.+.|+ ++| ++|
T Consensus 90 DVvIDFT~p------------------~a~~~~~~~~l~~Gv-~vV-iGT 119 (288)
T 3ijp_A 90 EGILDFSQP------------------QASVLYANYAAQKSL-IHI-IGT 119 (288)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHHTC-EEE-ECC
T ss_pred CEEEEcCCH------------------HHHHHHHHHHHHcCC-CEE-EEC
Confidence 999998632 123356677778876 555 444
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.011 Score=53.53 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=49.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC----H-HHHHHHHc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD----K-AALEVVFA 75 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~-~~~~~~~~ 75 (347)
+.+|||+|+ |.+|...++.+...|. +|+++++++.+.+.. .++ +...+ .|..+ . +.+.++..
T Consensus 193 g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~----~~l------Ga~~v-i~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 193 GSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA----KVF------GATDF-VNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH----HHT------TCCEE-ECGGGCSSCHHHHHHHHHT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHh------CCceE-EeccccchhHHHHHHHHhC
Confidence 368999995 9999999999999998 799998876655432 222 22211 23322 1 23333333
Q ss_pred cCCCcEEEEcccc
Q 040584 76 GTKFDAVIHFAGL 88 (347)
Q Consensus 76 ~~~~d~vih~a~~ 88 (347)
. ++|+||+++|.
T Consensus 261 ~-g~D~vid~~g~ 272 (374)
T 1cdo_A 261 G-GVDFSLECVGN 272 (374)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCCEEEECCCC
Confidence 3 79999999874
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.025 Score=51.94 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=33.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|.+|.|+| .|++|..++-.|++.||+|++++.++.+.+
T Consensus 21 m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did~~kV~ 58 (444)
T 3vtf_A 21 MASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVNPSIVE 58 (444)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 46899998 999999999999999999999988765543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=57.37 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=49.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++++|+|+ |..|+.++..|.+.|+ +|+++.|+.++.+.+. .++..+ ..+++.+++. ++|
T Consensus 117 ~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la-----------~~~~~~-----~~~~~~~~~~--~aD 177 (277)
T 3don_A 117 DAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS-----------LNINKI-----NLSHAESHLD--EFD 177 (277)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC-----------SCCEEE-----CHHHHHHTGG--GCS
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-----------Hhcccc-----cHhhHHHHhc--CCC
Confidence 368999995 8999999999999998 8999999876543211 122221 2455666666 489
Q ss_pred EEEEccccc
Q 040584 81 AVIHFAGLK 89 (347)
Q Consensus 81 ~vih~a~~~ 89 (347)
+||++....
T Consensus 178 iVInaTp~G 186 (277)
T 3don_A 178 IIINTTPAG 186 (277)
T ss_dssp EEEECCC--
T ss_pred EEEECccCC
Confidence 999997643
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.02 Score=53.23 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=73.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
++|+|.| .|-+|.+|++.|. ++++|.++.+...+...+.+.+ ++...+.+|-+|.+-+.+.=-. .+|++
T Consensus 236 ~~v~I~G-gG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l--------~~~~Vi~GD~td~~~L~ee~i~-~~D~~ 304 (461)
T 4g65_A 236 RRIMIVG-GGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEEL--------ENTIVFCGDAADQELLTEENID-QVDVF 304 (461)
T ss_dssp CEEEEEC-CSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHC--------TTSEEEESCTTCHHHHHHTTGG-GCSEE
T ss_pred cEEEEEc-chHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHC--------CCceEEeccccchhhHhhcCch-hhcEE
Confidence 5789998 8899999999975 5699999987766665555443 3667899999999988876322 58999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccccc
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAY 133 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~y 133 (347)
|-+.+- -+.|+. ....|++.|+++.|-.-.-..|
T Consensus 305 ia~T~~-------------De~Ni~----~~llAk~~gv~kvIa~vn~~~~ 338 (461)
T 4g65_A 305 IALTNE-------------DETNIM----SAMLAKRMGAKKVMVLIQRGAY 338 (461)
T ss_dssp EECCSC-------------HHHHHH----HHHHHHHTTCSEEEEECSCHHH
T ss_pred EEcccC-------------cHHHHH----HHHHHHHcCCccccccccccch
Confidence 887431 133553 3445678899888766554444
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0039 Score=53.22 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=47.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|.|+| +|.+|+.+++.|.+.|++|.+.+|++.+.+...+.+ ++.. ..+ +.++++ .+|+
T Consensus 3 ~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---------g~~~----~~~---~~~~~~--~~D~ 63 (259)
T 2ahr_A 3 AMKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL---------ALPY----AMS---HQDLID--QVDL 63 (259)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH---------TCCB----CSS---HHHHHH--TCSE
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc---------CCEe----eCC---HHHHHh--cCCE
Confidence 57999999 899999999999999999999988755443322211 1111 122 445555 5899
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
||-+..
T Consensus 64 Vi~~v~ 69 (259)
T 2ahr_A 64 VILGIK 69 (259)
T ss_dssp EEECSC
T ss_pred EEEEeC
Confidence 999974
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.02 Score=50.35 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=33.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchh
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNAS 39 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~ 39 (347)
|.|+|.|+| .|.+|..+++.|.+.|+ +|++.+|++...
T Consensus 32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~ 71 (314)
T 3ggo_A 32 SMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESI 71 (314)
T ss_dssp SCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHH
Confidence 347999999 89999999999999999 999998876544
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0077 Score=54.37 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=50.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+.+|||+|+ |.+|...++.+...|++|+++.+++.+.+... ++ +... ..|..+.+.+.++.. ++|+
T Consensus 195 g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~----~l------Ga~~-vi~~~~~~~~~~~~~--g~Dv 260 (369)
T 1uuf_A 195 GKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK----AL------GADE-VVNSRNADEMAAHLK--SFDF 260 (369)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----HH------TCSE-EEETTCHHHHHTTTT--CEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hc------CCcE-EeccccHHHHHHhhc--CCCE
Confidence 368999997 88999999999999999999998766654332 22 1111 134455544444333 7999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||.++|.
T Consensus 261 vid~~g~ 267 (369)
T 1uuf_A 261 ILNTVAA 267 (369)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999874
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0086 Score=46.20 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=27.9
Q ss_pred ceEEEEcCC---CcccHHHHHHHHhCCCeEEEEe
Q 040584 3 KNILVIGGV---GYIGSHTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 3 ~~vlItGat---G~iG~~l~~~L~~~g~~v~~~~ 33 (347)
++|.|.|++ |.+|..+++.|++.||+|+.+.
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vn 56 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVN 56 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCEEEEEC
Confidence 689999998 8999999999999999977664
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0073 Score=54.12 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=32.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|+|.|+| .|.+|+.++..|.+.|++|++++|++...+
T Consensus 5 mki~iiG-~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~ 41 (359)
T 1bg6_A 5 KTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRIK 41 (359)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6899999 599999999999999999999988755443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0028 Score=53.74 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=32.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
+|+|.|+| .|.+|+.+++.|++.|++|++.+|++.+
T Consensus 19 ~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~~~ 54 (245)
T 3dtt_A 19 GMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDPKA 54 (245)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 58999998 9999999999999999999999987554
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0081 Score=54.54 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=53.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|+|+|+ |.+|..+++.+.+.|++|++++..+..... .. .-..+..|..|.+.+.++++..++|.
T Consensus 11 ~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~------~~------~d~~~~~~~~d~~~l~~~~~~~~~d~ 77 (391)
T 1kjq_A 11 ATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM------HV------AHRSHVINMLDGDALRRVVELEKPHY 77 (391)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG------GG------SSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCchh------hh------ccceEECCCCCHHHHHHHHHHcCCCE
Confidence 589999985 789999999999999999998865443210 00 11345678888888888886557999
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
|+...
T Consensus 78 v~~~~ 82 (391)
T 1kjq_A 78 IVPEI 82 (391)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 98753
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0048 Score=57.25 Aligned_cols=76 Identities=20% Similarity=0.074 Sum_probs=52.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEec-------CCCCHHHHHHH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL-------DLRDKAALEVV 73 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~ 73 (347)
||++|||+|+ |.+|..+++.+.+.|++|+++............ + .. ..+.. |..|.+.+.++
T Consensus 1 m~k~ilI~g~-g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~----~----ad--~~~~~~p~~~~~~~~d~~~l~~~ 69 (449)
T 2w70_A 1 MLDKIVIANR-GEIALRILRACKELGIKTVAVHSSADRDLKHVL----L----AD--ETVCIGPAPSVKSYLNIPAIISA 69 (449)
T ss_dssp CCSEEEECCC-HHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHH----H----SS--EEEEEECSSGGGTTTCHHHHHHH
T ss_pred CCceEEEeCC-cHHHHHHHHHHHHcCCeEEEEeccccccCchhh----h----CC--EEEEcCCCCccccccCHHHHHHH
Confidence 8899999995 799999999999999999988643222111111 1 11 12222 66788888888
Q ss_pred HccCCCcEEEEccc
Q 040584 74 FAGTKFDAVIHFAG 87 (347)
Q Consensus 74 ~~~~~~d~vih~a~ 87 (347)
+++.++|.|+-..+
T Consensus 70 ~~~~~~d~v~~~~g 83 (449)
T 2w70_A 70 AEITGAVAIHPGYG 83 (449)
T ss_dssp HHHHTCCEEECCSS
T ss_pred HHHcCCCEEEECCC
Confidence 86657999886533
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.01 Score=54.25 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=49.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH---HHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK---AALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~~ 77 (347)
+.+|+|+|+ |.+|...++.+...|+ +|+++++++.+.+. +.++ +...+ .|..+. +.+.++....
T Consensus 214 g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~----~~~l------Ga~~v-i~~~~~~~~~~i~~~t~g~ 281 (404)
T 3ip1_A 214 GDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNL----AKEL------GADHV-IDPTKENFVEAVLDYTNGL 281 (404)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHH----HHHH------TCSEE-ECTTTSCHHHHHHHHTTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH----HHHc------CCCEE-EcCCCCCHHHHHHHHhCCC
Confidence 368999998 9999999999999999 89988876554432 2222 12211 233222 2344444434
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|+||.++|.
T Consensus 282 g~D~vid~~g~ 292 (404)
T 3ip1_A 282 GAKLFLEATGV 292 (404)
T ss_dssp CCSEEEECSSC
T ss_pred CCCEEEECCCC
Confidence 69999999874
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.015 Score=52.64 Aligned_cols=74 Identities=24% Similarity=0.250 Sum_probs=52.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecC----------------CCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD----------------LRD 66 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D----------------l~d 66 (347)
.+|+|+|+ |-+|...++.|...|.+|+++++++.+.+... .+ +..++..+ +++
T Consensus 191 ~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~----~~------G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 191 AKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA----SL------GAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH----HT------TCEECCCCC-----------------C
T ss_pred CEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH----Hc------CCceeecccccccccccccchhhhcch
Confidence 58999995 99999999999999999999999877654332 22 22222221 222
Q ss_pred ------HHHHHHHHccCCCcEEEEccccc
Q 040584 67 ------KAALEVVFAGTKFDAVIHFAGLK 89 (347)
Q Consensus 67 ------~~~~~~~~~~~~~d~vih~a~~~ 89 (347)
...+.++++ ++|+||.++...
T Consensus 260 ~~~~~~~~~l~e~l~--~aDVVI~tvlip 286 (405)
T 4dio_A 260 EYQVKQAALVAEHIA--KQDIVITTALIP 286 (405)
T ss_dssp HHHHHHHHHHHHHHH--TCSEEEECCCCS
T ss_pred hhhhhhHhHHHHHhc--CCCEEEECCcCC
Confidence 246777887 699999987643
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.023 Score=54.60 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=66.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEec
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
.+|+|.| .|.+|+.+++.|+..|. ++++++... .+.....+.+..+.+ .-.+..+..
T Consensus 18 s~VlVVG-aGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP--~v~V~a~~~ 94 (640)
T 1y8q_B 18 GRVLVVG-AGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYP--KANIVAYHD 94 (640)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCT--TCEEEEEES
T ss_pred CeEEEEC-cCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCC--CCeEEEEec
Confidence 5899999 58899999999999996 666766432 112223333333321 234555666
Q ss_pred CCCCHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 63 Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
++.+......++. ++|+||.+.. |+..-..+-++|...++ .+|..++.+.+|
T Consensus 95 ~i~~~~~~~~~~~--~~DlVvda~D-----------------n~~aR~~ln~~c~~~~i-PlI~~g~~G~~G 146 (640)
T 1y8q_B 95 SIMNPDYNVEFFR--QFILVMNALD-----------------NRAARNHVNRMCLAADV-PLIESGTAGYLG 146 (640)
T ss_dssp CTTSTTSCHHHHT--TCSEEEECCS-----------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred ccchhhhhHhhhc--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEEEecccc
Confidence 6654322235566 5899998842 33333456667777776 577776655433
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.021 Score=49.94 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=69.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|| |.+|..++..|+.+|+ +|.+++.... .......+.+.. .+++.. ..| + +.++ ++
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~---~~~i~~-t~d------~-~~l~--~a 78 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFN---LPNVEI-SKD------L-SASA--HS 78 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHT---CTTEEE-ESC------G-GGGT--TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhc---CCCeEE-eCC------H-HHHC--CC
Confidence 378999995 9999999999999998 9999998764 221111222221 224443 233 2 3355 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||-.+|...+ .....+....|+...+.+++.+.+.... .++.+|.
T Consensus 79 D~Vi~aag~~~p---G~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 79 KVVIFTVNSLGS---SQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp SEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CEEEEcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 999999987432 2233456677888888888888876433 4555554
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.02 Score=50.77 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC---CeEEEEe
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG---YKTVVVD 33 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g---~~v~~~~ 33 (347)
|+.+|.|.|+ |.||+.+++.|.+++ .+|.++.
T Consensus 1 M~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaIn 35 (339)
T 3b1j_A 1 MTIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAIN 35 (339)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred CceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 7789999999 999999999998872 6777665
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0048 Score=55.10 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~ 78 (347)
+.+|+|+|+ |.+|...++.+... |++|+++++++.+.+. +.++ +...+ .|..+ .+...++-...+
T Consensus 171 g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~----~~~l------Ga~~v-i~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 171 EPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDF----ALEL------GADYV-SEMKDAESLINKLTDGLG 238 (344)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHH----HHHH------TCSEE-ECHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH----HHHh------CCCEE-eccccchHHHHHhhcCCC
Confidence 468999999 99999999999888 9999999876554432 2222 11111 23333 232333333336
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||+++|.
T Consensus 239 ~D~vid~~g~ 248 (344)
T 2h6e_A 239 ASIAIDLVGT 248 (344)
T ss_dssp EEEEEESSCC
T ss_pred ccEEEECCCC
Confidence 9999999873
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0076 Score=54.18 Aligned_cols=73 Identities=27% Similarity=0.299 Sum_probs=51.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCC------------------
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL------------------ 64 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl------------------ 64 (347)
.+|+|+|+ |-+|...++.|...|.+|++++|++.+.+...+ + +..++..|.
T Consensus 185 ~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~----l------Ga~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 185 ASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS----V------GAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH----T------TCEECCCC-------------CHHHHH
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----c------CCeEEeccccccccccchhhhhHHHHh
Confidence 58999995 999999999999999999999998766543322 2 223322211
Q ss_pred CCHHHHHHHHccCCCcEEEEcccc
Q 040584 65 RDKAALEVVFAGTKFDAVIHFAGL 88 (347)
Q Consensus 65 ~d~~~~~~~~~~~~~d~vih~a~~ 88 (347)
.+.+.+.+++. ++|+||.++..
T Consensus 254 ~~~~~l~e~l~--~aDIVI~tv~i 275 (381)
T 3p2y_A 254 QQQQALEDAIT--KFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHT--TCSEEEECCCC
T ss_pred hhHHHHHHHHh--cCCEEEECCCC
Confidence 12346677777 69999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 347 | ||||
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-95 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-86 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 1e-83 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 5e-80 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 3e-79 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-73 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 9e-72 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-62 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 8e-61 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 9e-60 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 5e-58 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 1e-57 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-55 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 2e-54 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 2e-48 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 3e-41 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 2e-31 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-28 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 7e-26 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 7e-23 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 5e-18 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 9e-18 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 5e-17 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-15 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 9e-15 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 1e-12 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 2e-12 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 2e-11 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 8e-08 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 2e-07 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 3e-07 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 3e-07 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 3e-07 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 7e-07 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 1e-06 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 1e-06 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 1e-06 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 3e-06 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 3e-06 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 4e-06 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 4e-06 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 5e-06 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 9e-06 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 1e-05 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-05 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 2e-05 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 3e-05 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 3e-05 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 3e-05 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 5e-05 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 6e-05 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 6e-05 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 1e-04 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 1e-04 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 2e-04 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 2e-04 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 3e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 3e-04 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 3e-04 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 3e-04 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 3e-04 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 3e-04 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 4e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 5e-04 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 5e-04 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 6e-04 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 9e-04 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 0.001 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.001 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 0.002 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 0.002 |
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 284 bits (728), Expect = 2e-95
Identities = 175/340 (51%), Positives = 228/340 (67%), Gaps = 6/340 (1%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
+LV GG GYIGSHT +QLL G+ +++DNL N+ + ++ L G + TF + D
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG---KHPTFVEGD 58
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+R++A + + D VIHFAGLKAVGESVQKPL Y+DNN+ GT+ L+ M A KN
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 124 LVFSSSATAYGWPKVVPCTEEF-PLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
+FSSSAT YG +P E F +PYG+SKL +E+I D+ ++ +W I LLRYF
Sbjct: 119 FIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYF 178
Query: 183 NPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
NPVGAHPSG GEDP+GIPNNLMP++ QVAVGRR +L +FG DY T+DGT VRDYIHV+D
Sbjct: 179 NPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMD 238
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301
LADGH+ A+ K K G +YNLG G G SVL++V AF KA GK + + RR GD
Sbjct: 239 LADGHVVAMEK-LANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
+A KA+RELNW+ +DEM +D W+W S++P GY
Sbjct: 298 AYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYP 337
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 262 bits (669), Expect = 2e-86
Identities = 202/347 (58%), Positives = 242/347 (69%), Gaps = 6/347 (1%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA---KVKELAGYQGNNM 57
MA+ +LV GG GYIGSHTVL+LL GY VV+DN NA + ++ + G ++
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
F ++D+ D+ AL+ +F F AVIHFAGLKAVGESVQKPL Y+ NLTGTI LLE+M
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEFP-LQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
AHG KNLVFSSSAT YG P+ +P E P NPYG+SK FIEE+ RD+ ++D W
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA 180
Query: 177 ILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235
+LLRYFNP GAH SG GEDP+GIPNNLMP+V+QVA+GRR AL VFG DY T+DGT VRD
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 240
Query: 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR 295
YIHVVDLA GHIAALRK + GC +YNLGTG G SVL+MV A EKASGKKIP R
Sbjct: 241 YIHVVDLAKGHIAALRK-LKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 342
R GD YA+ A+ EL W A G+D MC D W W +NP G+ +
Sbjct: 300 REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT 346
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 255 bits (651), Expect = 1e-83
Identities = 178/348 (51%), Positives = 241/348 (69%), Gaps = 12/348 (3%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV GG GYIGSHTV++L+ GY VV DNL N++ +VA+++ L +++ F+++
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL---TKHHIPFYEV 58
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
DL D+ LE VF K D+VIHFAGLKAVGES Q PL Y+ NN+ GT+ LLE+M +
Sbjct: 59 DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS 118
Query: 123 NLVFSSSATAYG----WPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSE-WKII 177
VFSSSAT YG +P ++P EE PL NPYG +K IE I D++ SD + WK
Sbjct: 119 KFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFA 178
Query: 178 LLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
+LRYFNP+GAHPSG GEDP GIPNNL+P++ QVAVGRR L +FG DY ++DGT +RDY
Sbjct: 179 ILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDY 238
Query: 237 IHVVDLADGHIAALRKLDD---PKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 293
IHVVDLA GHIAAL+ L+ + C +NLG+GKG++V E+ AF KASG +P +
Sbjct: 239 IHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVT 298
Query: 294 GRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 341
GRR GD + A ++A+REL W+ + +++ C+D W W ++NP+GY+
Sbjct: 299 GRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQ 346
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 246 bits (629), Expect = 5e-80
Identities = 85/367 (23%), Positives = 131/367 (35%), Gaps = 53/367 (14%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVV-VDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
IL+ GG G+IGS V ++ TVV +D L A + + +++ + N F
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLE--SLSDIS--ESNRYNFEHA 57
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D A + +F + DAV+H A V S+ P + + N+ GT LLEV +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 123 N---------LVFSSSATAYGWPKVVP----------CTEEFPLQAMNPYGRSKLFIEEI 163
S+ YG TE +PY SK + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 164 CRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223
R R+ I+ N G P P L+P V A+ +P L ++G
Sbjct: 178 VRAWRRT-YGLPTIVTNCSNNYG---------PYHFPEKLIPLVILNALEGKP-LPIYG- 225
Query: 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAF--- 280
G +RD+++V D A + + E YN+G L++V
Sbjct: 226 -----KGDQIRDWLYVEDHARALHMVVTE----GKAGETYNIGGHNEKKNLDVVFTICDL 276
Query: 281 -----EKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335
KA+ + + RPG K REL WK + R W
Sbjct: 277 LDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
Query: 336 NPYGYES 342
N +
Sbjct: 337 NTQWVNN 343
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 242 bits (619), Expect = 3e-79
Identities = 76/345 (22%), Positives = 138/345 (40%), Gaps = 39/345 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K IL+ GG G++GSH +L++ G++ VVDN + V
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIG----------HENF 51
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+L + +E ++ + D + H A + + P+ N GT+ +L + G +
Sbjct: 52 ELINHDVVEPLYI--EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 109
Query: 123 NLVFSSSATAYGWPKVVPCTEEF-----PLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
L+ +S++ YG P+V P +E++ P+ Y K E +C + + ++
Sbjct: 110 -LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE-GVEVR 167
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237
+ R FN G P D R + N F+ Q G LTV+G G+ R +
Sbjct: 168 VARIFNTFG--PRMHMNDGRVVSN----FILQALQGEP--LTVYG------SGSQTRAFQ 213
Query: 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP 297
+V DL +G +A + NLG + ++LE + G +
Sbjct: 214 YVSDLVNGLVALMNSNV-----SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 268
Query: 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 342
D + +KA+ L W+ ++E ++ K Y++
Sbjct: 269 DDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE-LEYQA 312
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 230 bits (586), Expect = 1e-73
Identities = 74/373 (19%), Positives = 120/373 (32%), Gaps = 57/373 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA-VAKVKELAGYQGNNMTFHK 61
K L+ G G GS+ LL GY+ + ++ V + + H
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DL D + L + + D V + + V S + P D + GT+ LLE + G
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121
Query: 122 KN---LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
+ +S++ YG + +P E P +PY +KL+ I + S
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG-MYACN 180
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
FN + + + +A G L G S +D +DY+
Sbjct: 181 GILFNHESP-----RRGETFVTRKITRAIANIAQGLESCL-YLGNMDSLRDWGHAKDYVK 234
Query: 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK----------- 287
+ + E + + TG SV + V G K
Sbjct: 235 MQWMMLQQEQP-----------EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEK 283
Query: 288 ----------IPLVKSG----------RRPGDAEIVYASTEKAERELNWKAKYGIDEMCR 327
P VK G RP + E + KA +L WK + + EM
Sbjct: 284 GIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVS 343
Query: 328 D----QWNWASKN 336
+ A K+
Sbjct: 344 EMVANDLEAAKKH 356
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 223 bits (570), Expect = 9e-72
Identities = 91/347 (26%), Positives = 136/347 (39%), Gaps = 36/347 (10%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKT------VVVDNLDNASEIAVAKVKELAGYQGNNM 57
+LV GG G+IGSH V QLL G Y +V+D+L A A + +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD----ADPRL 57
Query: 58 TFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA 117
F D+RD + DA++HFA V S+ + + N+ GT TLL+
Sbjct: 58 RFVHGDIRDAG--LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAV 115
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKII 177
G +V S+ YG TE PL+ +PY SK + + R HR+ +
Sbjct: 116 DAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRT-YGLDVR 174
Query: 178 LLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
+ R N G P P L+P FVT + G L ++G DG VR++
Sbjct: 175 ITRCCNNYG---------PYQHPEKLIPLFVTNLLDGGT--LPLYG------DGANVREW 217
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK-SGR 295
+H D G L E+Y++G G + E+ + G V+
Sbjct: 218 VHTDDHCRGIALVLAG----GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVAD 273
Query: 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYES 342
R G K EREL ++ + + W +N +E
Sbjct: 274 RKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGWWEP 320
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 200 bits (509), Expect = 2e-62
Identities = 77/336 (22%), Positives = 133/336 (39%), Gaps = 23/336 (6%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-YQGNNMTFHK 61
K L+ G G+IGS+ + LL K V +DN + + +V+ L Q +N F +
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQ 76
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+R+ D V+H A L +V S+ P+ N+ G + +L
Sbjct: 77 GDIRNLDDCNNAC--AGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV 134
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
++ +++S++ YG +P E+ + ++PY +K E R + I LRY
Sbjct: 135 QSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRC-YGFSTIGLRY 193
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
FN G +DP G ++P T + + + G DG RD+ ++ +
Sbjct: 194 FNVFGRR-----QDPNGAYAAVIPKWTSSMIQGDD-VYING------DGETSRDFCYIEN 241
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS-----GRR 296
++ A D + +VYN+ G TS+ ++ A + R
Sbjct: 242 TVQANLLAATAGLDAR--NQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFR 299
Query: 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNW 332
GD A KA + L + KY + W
Sbjct: 300 EGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPW 335
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 195 bits (497), Expect = 8e-61
Identities = 57/340 (16%), Positives = 109/340 (32%), Gaps = 34/340 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ + + G G +GS QL G +V+ D L
Sbjct: 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE------------------------L 38
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAG-LKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
+L D A+ FA + D V A + + + P + N+ ++ +
Sbjct: 39 NLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDV 98
Query: 122 KNLVFSSSATAYGWPKVVPCTEEFPLQAM-----NPYGRSKLFIEEICRDVHRSDSEWKI 176
L+F S+ Y P E LQ PY +K+ ++C +R
Sbjct: 99 NKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYG-RDY 157
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
+ N G H + + + L+ + + P + V+G+ ++ V D
Sbjct: 158 RSVMPTNLYGPHDNFHPSNSH-VIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDM 216
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR 296
L++ + N+GTG ++ E+ K G K +V +
Sbjct: 217 AAASIHVMELAHE-VWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK 275
Query: 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
P + +L W + ++ + W +N
Sbjct: 276 PDGTPRKLLDVTRL-HQLGWYHEISLEAGLASTYQWFLEN 314
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 195 bits (494), Expect = 9e-60
Identities = 129/380 (33%), Positives = 179/380 (47%), Gaps = 44/380 (11%)
Query: 4 NILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNL-------------DNASEIAVAKVKEL 49
+LV GG GYIGSH V LL + V+VD+L +N +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 50 AGYQGNNMTFHKLDLRDKAALEVVFAGTK-FDAVIHFAGLKAVGESVQKPLPYFDNNLTG 108
+ D+R++ L VF DAV+H AVGESV+ PL Y+DNN+ G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 109 TITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP-------LQAMNPYGRSKLFIE 161
+ LL+ M H C ++FSSSA +G P + + +PYG SKL E
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-----FVTQVAVGRRP 216
+ RD + K I LRYFN GAH G + +L+P ++ +A +R
Sbjct: 184 RMIRDCAEAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRL 242
Query: 217 A----------LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGC-----E 261
+ +FGTDY T DGT VRDY+HV DLA HI AL ++
Sbjct: 243 TIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS 302
Query: 262 VYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYG 321
V+NLGT +G SV E++ K +G IP+ + GRR GD + A+++KA L WK KY
Sbjct: 303 VFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYD 362
Query: 322 IDE-MCRDQWNWASKNPYGY 340
E + W + +P GY
Sbjct: 363 TLEAIMETSWKFQRTHPNGY 382
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 189 bits (480), Expect = 5e-58
Identities = 66/354 (18%), Positives = 125/354 (35%), Gaps = 27/354 (7%)
Query: 3 KNI-LVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAK--VKELAGYQGNNMTF 59
+N+ L+ G G GS+ LL GY+ + ++ + K + NM
Sbjct: 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKL 60
Query: 60 HKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH 119
H DL D L + K + + V S D + GT+ LL+ +
Sbjct: 61 HYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC 120
Query: 120 G---CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
G +S++ YG + +P E P +PYG +KL+ I + + + + +
Sbjct: 121 GLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAV 180
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
FN + + V ++ +G+ G + +D +DY
Sbjct: 181 N-GILFNHESPRRG-----ANFVTRKISRSVAKIYLGQLE-CFSLGNLDAKRDWGHAKDY 233
Query: 237 IHVVDL------ADGHIAALRKLDDPKVGCEVYNLGTGKG----TSVLEMVAAFEKASGK 286
+ + L + + A ++ + E L GK V ++
Sbjct: 234 VEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKV 293
Query: 287 KIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRD----QWNWASKN 336
+ + RP + + + KA+++LNWK + DE+ R+ N
Sbjct: 294 HVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTN 347
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 188 bits (476), Expect = 1e-57
Identities = 73/351 (20%), Positives = 125/351 (35%), Gaps = 31/351 (8%)
Query: 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHK 61
AK +L+ GG G++GS+ L G +V DNL + L+ N F
Sbjct: 1 AK-LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATD--NLHWLSSL--GNFEFVH 55
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
D+R+K + + D+ H AG A+ S+ P F+ N+ GT+ LLE + +
Sbjct: 56 GDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNS 115
Query: 122 K-NLVFSSSATAYGWPKVVPC----------------TEEFPLQAMNPYGRSKLFIEEIC 164
N+++SS+ YG + E L +PYG SK ++
Sbjct: 116 NCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYM 175
Query: 165 RDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224
D R ++ G + + G ++ G T+ G
Sbjct: 176 LDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWF---CQKAVEIKNGINKPFTISG-- 230
Query: 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKAS 284
+G VRD +H D+ + AL + + S+LE+ E
Sbjct: 231 ----NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYC 286
Query: 285 GKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335
+ R D + A +K ++W K + + ++W S
Sbjct: 287 NIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 182 bits (462), Expect = 2e-55
Identities = 77/354 (21%), Positives = 120/354 (33%), Gaps = 41/354 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKT--VVVDNLDNASEIAVAKVKELAGYQGNNMTFH 60
KNI+V GG G+IGS+ V + V+D L A L G+ +
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-----NKANLEAILGDRVELV 57
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG 120
D+ D ++ + K DA++H+A S+ P P+ N GT TLLE +
Sbjct: 58 VGDIADAELVDKLA--AKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD 115
Query: 121 CK-----------NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHR 169
+ +L +G T E +PY +K + I + R
Sbjct: 116 IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVR 175
Query: 170 SDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229
S K + N G P +P + ++G +
Sbjct: 176 SFG-VKATISNCSNNYG---------PYQHIEKFIPRQITNILAGIK-PKLYG------E 218
Query: 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP 289
G VRD+IH D + G A L K + + G VLE++ EK K
Sbjct: 219 GKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGAD-GEKNNKEVLELI--LEKMGQPKDA 275
Query: 290 LVKSGRRPGDAEIVYASTEKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYES 342
R G K EL W ++ E + W + N +++
Sbjct: 276 YDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKA 329
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 179 bits (453), Expect = 2e-54
Identities = 61/339 (17%), Positives = 127/339 (37%), Gaps = 27/339 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
++ LV G G G++ LL GY+ + ++ +++EL ++ +
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRW--RLRELGIE--GDIQYEDG 56
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ D +++ + V + A VG S +P+ + G LLE + +
Sbjct: 57 DMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPE 116
Query: 123 NLVF-SSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRY 181
+ +S++ +G + E P +PYG +KL+ I + S
Sbjct: 117 TRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFG-LHASSGIL 175
Query: 182 FNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241
FN + + V ++ +G++ L + + RD+ D
Sbjct: 176 FNHESPLR-----GIEFVTRKVTDAVARIKLGKQQELRLG-------NVDAKRDWGFAGD 223
Query: 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKK----IPLVKSGRRP 297
+ L++ + Y + TG T+V +M + G + + + RP
Sbjct: 224 YVEAMWLMLQQDK-----ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRP 278
Query: 298 GDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
+ +++ + KA+R L WK + +DE+ R +
Sbjct: 279 AEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRR 317
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 164 bits (416), Expect = 2e-48
Identities = 65/346 (18%), Positives = 113/346 (32%), Gaps = 40/346 (11%)
Query: 1 MAKN--ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMT 58
++N I + G G+I SH +L G+ + D N E
Sbjct: 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE---------- 61
Query: 59 FHKLDLRDKAALEVVFAGTKFDAVIHFAGL-KAVGESVQKPLPYFDNNLTGTITLLEVMA 117
FH +DLR + D V + A +G NN + ++E
Sbjct: 62 FHLVDLRVMENC--LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAAR 119
Query: 118 AHGCKNLVFSSSATAYGWPKVVPCT-------EEFPLQAMNPYGRSKLFIEEICRDVHRS 170
+G K ++SSA Y K + T + +P + + +G KL EE+C+ ++
Sbjct: 120 INGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKD 179
Query: 171 DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230
+ + R+ N G A R A T DG
Sbjct: 180 -FGIECRIGRFHNIYGPF-----------GTWKGGREKAPAAFCRKAQTSTDRFEMWGDG 227
Query: 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 290
R + + + +G + + E N+G+ + S+ EM KK+P
Sbjct: 228 LQTRSFTFIDECVEGVLRLTK-----SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLP- 281
Query: 291 VKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
+ P + + +L W + E R + W +
Sbjct: 282 IHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ 327
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 145 bits (365), Expect = 3e-41
Identities = 55/340 (16%), Positives = 101/340 (29%), Gaps = 20/340 (5%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAK--VKELAGYQGNNMTFH 60
K L+ G G GS+ LL GY+ + + + M H
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITL----LEVM 116
DL D ++L K D V + A V S + P D TG + L
Sbjct: 62 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121
Query: 117 AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKI 176
G + + ++ P +E P +PY SK + +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREA-YGLFA 180
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
FN + + + ++ VG + L G +++D DY
Sbjct: 181 CNGILFNHESPR-----RGENFVTRKITRALGRIKVGLQTKL-FLGNLQASRDWGFAGDY 234
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRR 296
+ + L + P G + + + + R
Sbjct: 235 VEAMWLMLQQ-------EKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFR 287
Query: 297 PGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
P + + + KA+ L WK + G +++ + + +
Sbjct: 288 PAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLEL 327
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 119 bits (297), Expect = 2e-31
Identities = 67/348 (19%), Positives = 106/348 (30%), Gaps = 46/348 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+LV G G++ SH V QLL GYK V +AS++A + + A Y G T
Sbjct: 12 SLVLVTGANGFVASHVVEQLLEHGYK--VRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC- 121
D+ + A + V G A I V K + GT+ L AA
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIAS-----VVSFSNKYDEVVTPAIGGTLNALRAAAATPSV 124
Query: 122 KNLVFSSSATAYGWPK--------------------VVPCTEEFPLQAMNPYGRSKLFIE 161
K V +SS + PK E P +++ Y SK E
Sbjct: 125 KRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAE 184
Query: 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221
+ + + G DP + ++ +
Sbjct: 185 LAAWKFMDENKPHF----TLNAVLPNYTIGTIFDPETQSGSTSGWMMSL---------FN 231
Query: 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFE 281
G + Y+ VD+ H+ L GT ++A F
Sbjct: 232 GEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ----IERRRVYGTAGTFDWNTVLATFR 287
Query: 282 KA-SGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRD 328
K K P + ++ A + + + L I+E +D
Sbjct: 288 KLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKD 335
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 111 bits (277), Expect = 1e-28
Identities = 51/346 (14%), Positives = 93/346 (26%), Gaps = 18/346 (5%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K + V G G+ G L L G + + M
Sbjct: 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVA-----DGMQSEIG 63
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+RD+ L + + V H A V S +P+ + N+ GT+ LLE + G
Sbjct: 64 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 123
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQ--AMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
V + ++ K +PY SK E + S
Sbjct: 124 KAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 183
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
+ ++P + + +P + + +
Sbjct: 184 GTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGY-- 241
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSG-RRPGD 299
L + T V +V K G+ G P +
Sbjct: 242 ---LLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHE 298
Query: 300 AEIVYASTEKAERELNWKAKYGIDEMCRDQWNW-----ASKNPYGY 340
A + KA+ +L W ++ ++ W + + + Y
Sbjct: 299 AHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTDMHEY 344
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 104 bits (259), Expect = 7e-26
Identities = 59/372 (15%), Positives = 107/372 (28%), Gaps = 44/372 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGY---------- 52
++VIGG GY G T L L Y+ +VDNL ++ L
Sbjct: 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 53 ---QGNNMTFHKLDLRDKAALEVVFA---GTKFDAVIHFAGLKAVGESVQKPLPYFDNNL 106
G ++ + D+ D L F + + NN+
Sbjct: 62 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 121
Query: 107 TGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPC--------------TEEFPLQAMNP 152
GT+ +L + G + + + T +P QA +
Sbjct: 122 IGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSF 181
Query: 153 YGRSKLFIEEICRDVHRSDS------EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPF 206
Y SK+ ++ ++ + H +
Sbjct: 182 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALN 241
Query: 207 VTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266
V LTV+G T+ +RD + V++A + A + E +++
Sbjct: 242 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVN 301
Query: 267 TGKGTSVLEMVAAFEKASGKKIPL--VKSGRRPGDAEIVYASTEKAERELNWKAKYGIDE 324
+ +V G + V + R + A K EL + Y D
Sbjct: 302 E-----LASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDS 355
Query: 325 MCRDQWNWASKN 336
+ N+A +
Sbjct: 356 LLDSLLNFAVQF 367
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 95.4 bits (235), Expect = 7e-23
Identities = 48/355 (13%), Positives = 103/355 (29%), Gaps = 41/355 (11%)
Query: 4 NILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+L++G G+IG+H +LL Y+ +D +A + + F +
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---------PHFHFVEG 52
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ + + + K D V+ + E + PL F+ + + ++ + +
Sbjct: 53 DISIHSEW-IEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR 111
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYG------RSKLFIEEICRDVHRSDSEWKI 176
+ S+S + L SK ++ + +
Sbjct: 112 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 171
Query: 177 ILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236
+ R FN +G G + + + G G R +
Sbjct: 172 LF-RPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPI--------KLIDGGKQKRCF 222
Query: 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK---- 292
+ D + + + G + S+ E+ + K
Sbjct: 223 TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 282
Query: 293 -----------SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKN 336
G+ D E S A R L+W+ K + E + ++ +
Sbjct: 283 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 337
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 81.2 bits (198), Expect = 5e-18
Identities = 46/329 (13%), Positives = 84/329 (25%), Gaps = 26/329 (7%)
Query: 5 ILVIGGVGYIGSHTVLQLL-LGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
I+V GG G+IGS+ V L G +VVDNL + ++ +A Y K D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADY------MDKED 55
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ + +A+ H + E K + + + + +
Sbjct: 56 FLIQ--IMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLY 113
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+++ + E PL S Y
Sbjct: 114 ASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGP 173
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
G S ++ G RD+++V D+A
Sbjct: 174 REGHKGSMASVAFHLNTQLNNGESPKLFEGSEN---------------FKRDFVYVGDVA 218
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIV 303
D ++ L + +V + A+ K + +
Sbjct: 219 DVNLWFLENGVSGI--FNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT 276
Query: 304 YASTEKAERELNWKAKYGIDEMCRDQWNW 332
A K + E + W
Sbjct: 277 QADLTNLRAAGYDKPFKTVAEGVTEYMAW 305
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 79.5 bits (194), Expect = 9e-18
Identities = 38/289 (13%), Positives = 77/289 (26%), Gaps = 46/289 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+LV G G G +L G K V + +A E + G+ +
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-GEADVFIGDITDADSI 62
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG-- 120
+ + DA++ + P
Sbjct: 63 NPAFQ----------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQ 112
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
+ + A V P +N G + + + + + +DS ++R
Sbjct: 113 KNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIR 172
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
+ V ++ VG+ L +
Sbjct: 173 AGGLLDKEGG----------------VRELLVGKDDELLQTD-----------TKTVPRA 205
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGT---GKGTSVLEMVAAFEKASGK 286
D+A+ I A L + + ++LG+ G T + A F + + +
Sbjct: 206 DVAEVCIQA---LLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 251
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 78.3 bits (191), Expect = 5e-17
Identities = 42/289 (14%), Positives = 78/289 (26%), Gaps = 46/289 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+L++GG GYIG V + G+ T V+ + S I KV+ L ++ +
Sbjct: 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNI--DKVQMLLYFKQLGAKLIEA 61
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
L D L +++ + L+E + G
Sbjct: 62 SLDDHQRLVDALKQVDVVISALAG-------------GVLSHHILEQLKLVEAIKEAGNI 108
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
S P E LQ + K + +
Sbjct: 109 KRFLPSEFGMD------PDIMEHALQPGSITFIDKRKVRRAIEAAS-----IPYTYVSSN 157
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
G F +A + DG V ++ D+
Sbjct: 158 MFAG------------------YFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDV 199
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
I ++ D + +Y S E++ +E+ S + + +
Sbjct: 200 GTYTIKSID--DPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKI 246
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 73.5 bits (179), Expect = 3e-15
Identities = 30/292 (10%), Positives = 71/292 (24%), Gaps = 55/292 (18%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K I V+G G G+ + G+ + + + +++ + +T +
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVH--SLKGLIAEELQAIPN-----VTLFQG 56
Query: 63 DLRDKAA-LEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG- 120
L + ++ +F G + + + L + G
Sbjct: 57 PLLNNVPLMDTLFEGAHLAFINTT--------------SQAGDEIAIGKDLADAAKRAGT 102
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLR 180
++ ++SS + P + Y R
Sbjct: 103 IQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVY--------------- 147
Query: 181 YFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240
NN + F +
Sbjct: 148 ---------------AGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEH 192
Query: 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292
D+ + + G L + S +++ AAF +A +++ V+
Sbjct: 193 DVGPALLQIFKDGPQKWNG-HRIALT-FETLSPVQVCAAFSRALNRRVTYVQ 242
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 71.7 bits (174), Expect = 9e-15
Identities = 42/289 (14%), Positives = 75/289 (25%), Gaps = 51/289 (17%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
IL+IG GYIG H L G+ T ++ ++ + K + L ++ +
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVR-ESTASSNSEKAQLLESFKASGANIVHG 62
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
+ D A+L D VI G + + +++ + G
Sbjct: 63 SIDDHASLVEAVK--NVDVVISTVG---------------SLQIESQVNIIKAIKEVGTV 105
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYF 182
F S +G E +
Sbjct: 106 KRFFPSE---FGNDVDNVHAVEPAKSVFEVK---------AKVRRAIEAEGIPYTYVSSN 153
Query: 183 NPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242
G + P + DG ++ D+
Sbjct: 154 CFAGYFLRSLAQAGLTAPPRDKVVILG-------------------DGNARVVFVKEEDI 194
Query: 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV 291
I A+ D + +Y S+ E+VA +EK K +
Sbjct: 195 GTFTIKAVD--DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKA 241
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 65.3 bits (157), Expect = 1e-12
Identities = 52/339 (15%), Positives = 94/339 (27%), Gaps = 62/339 (18%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
NIL+ G G +G L G + +D D
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNL-IALDVHSK---------------------EFCGD 39
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ + + D +++ A AV ++ +P N T + + G
Sbjct: 40 FSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWV 99
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+ +S+ G +P E +N YG++KL E+ +D +
Sbjct: 100 VHYSTDYVFPG-TGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKH--LIFRTSWVYA 156
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
G + + L LA
Sbjct: 157 GKGNNFAKTMLRLAKERQTLSVI-----------------------NDQYGAPTGAELLA 193
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFE---KASGKKIPLVKSGRRPGDA 300
D A+R + +Y+L G T+ + A + +G + L + P A
Sbjct: 194 DCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSA 253
Query: 301 EIVYA--------STEKAERELNWKAKY---GIDEMCRD 328
A +TEK +R + G+ M +
Sbjct: 254 YPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTE 292
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 64.8 bits (156), Expect = 2e-12
Identities = 45/333 (13%), Positives = 88/333 (26%), Gaps = 71/333 (21%)
Query: 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLD 63
IL+ G G +G QL + + D LD
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTD-------------------------VQDLD 37
Query: 64 LRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKN 123
+ + A+ F K + VI+ A AV + ++ + N G L + G +
Sbjct: 38 ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEI 97
Query: 124 LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFN 183
+ S+ + P TE + + YG++KL E + ++ R
Sbjct: 98 VQISTD-YVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIV-----RTAW 151
Query: 184 PVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLA 243
G + + + VV D +
Sbjct: 152 LYGDGNNFVKTMINLGKTH-------------------------DELKVVHDQVGTPTST 186
Query: 244 DGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK--------SGR 295
+ K+ D + ++ S + + +G + + +
Sbjct: 187 VDLARVVLKVID-EKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAK 245
Query: 296 RPGDAEIVYASTEKAERELNWKA---KYGIDEM 325
RP + + E K + E
Sbjct: 246 RPKYSVL---RNYMLELTTGDITREWKESLKEY 275
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.0 bits (144), Expect = 2e-11
Identities = 46/252 (18%), Positives = 68/252 (26%), Gaps = 65/252 (25%)
Query: 1 MA-KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMT 58
MA K I + G G G T+ Q + GY+ TV+V + + G
Sbjct: 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60
Query: 59 FHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA 118
K DAVI G + L G ++ M A
Sbjct: 61 VDK-------------TVAGQDAVIVLLGTRN-------DLSPTTVMSEGARNIVAAMKA 100
Query: 119 HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIIL 178
HG +V +SA P VP + + + ++ R S ++ +
Sbjct: 101 HGVDKVVACTSAFLLWDPTKVPPR-------LQAVTDDHIRMHKVLR---ESGLKYVAV- 149
Query: 179 LRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238
P G+ P G T DG I
Sbjct: 150 ---------MPPHIGDQPLT-----------------------GAYTVTLDGRGPSRVIS 177
Query: 239 VVDLADGHIAAL 250
DL + L
Sbjct: 178 KHDLGHFMLRCL 189
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 50.4 bits (120), Expect = 8e-08
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 25/152 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ +L+ GG +G V + + G K V+D + ++ EL G+N+
Sbjct: 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLD-------KSAERLAELETDHGDNVLGIVG 58
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPY---------FDNNLTG 108
D+R + + K D +I AG+ ++ F N+ G
Sbjct: 59 DVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKG 118
Query: 109 TITL----LEVMAAHGCKNLVFSSSATAYGWP 136
I L + A + S+A Y
Sbjct: 119 YIHAVKACLPALVASRGNVIFTISNAGFYPNG 150
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 48.7 bits (116), Expect = 2e-07
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 24/148 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV GG IG G + D E+A + + G F ++
Sbjct: 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVA----EAIGG------AFFQV 55
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTITLL 113
DL D+ + D +++ A + A G ++ LP + NLT + L
Sbjct: 56 DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLS 115
Query: 114 EVMAAHGCKN-----LVFSSSATAYGWP 136
+ A K + +S +
Sbjct: 116 ALAAREMRKVGGGAIVNVASVQGLFAEQ 143
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.8 bits (116), Expect = 3e-07
Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 31/181 (17%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ++ G IG T + G K + E ++ AG N+
Sbjct: 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILA-AGVSEQNVNSVVA 64
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPY--------FDNNLTGT 109
D+ A + + + T K D +++ AG + + NL
Sbjct: 65 DVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSV 124
Query: 110 ITLLEVMAAH-----GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEIC 164
I L + H G + S ++ + P Y +K I++
Sbjct: 125 IALTKKAVPHLSSTKGEIVNISSIASGLHATPD------------FPYYSIAKAAIDQYT 172
Query: 165 R 165
R
Sbjct: 173 R 173
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (116), Expect = 3e-07
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 26/170 (15%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ LV G G IG+ L+ G K V E A+ K AGY G + ++
Sbjct: 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKS-AGYPG-TLIPYRC 68
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPY----FDNNLTGTI--- 110
DL ++ + +F+ D I+ AGL + F+ N+
Sbjct: 69 DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 128
Query: 111 -TLLEVMAAHGCKN--LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157
+ M + ++ +S + + PL + Y +K
Sbjct: 129 REAYQSMKERNVDDGHIININSMSGHRV---------LPLSVTHFYSATK 169
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 48.7 bits (115), Expect = 3e-07
Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 29/200 (14%)
Query: 1 MA-KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTF 59
M+ +++V G IG V QL+ ++ + K EL + + +
Sbjct: 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV-----EKATELKSIKDSRVHV 55
Query: 60 HKLDLRDKAALEVV-------FAGTKFDAVIHFAGLKAVGESVQKPLP-----YFDNNLT 107
L + +L+ +I+ AG+ + +P D N T
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTT 115
Query: 108 GTITL----LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA-------MNPYGRS 156
+ L L ++ K S + + + Y S
Sbjct: 116 SVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMS 175
Query: 157 KLFIEEICRDVHRSDSEWKI 176
K I R + + +
Sbjct: 176 KAAINMFGRTLAVDLKDDNV 195
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 47.6 bits (113), Expect = 7e-07
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 20/153 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ++ GG IG + + G + D + A A ++ L G + K
Sbjct: 6 KLAVITGGANGIGRAIAERFAVEGADIAIADL--VPAPEAEAAIRNL----GRRVLTVKC 59
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTITLL 113
D+ +E + D +++ AG+ + + + N+ +
Sbjct: 60 DVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMA 119
Query: 114 EVMAAHGCKN-----LVFSSSATAYGWPKVVPC 141
+ +N + +S+
Sbjct: 120 KAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHY 152
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 19/147 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV G IG LLL G K +VD A A + E F +
Sbjct: 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE--PQKTLFIQC 61
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTIT------ 111
D+ D+ L F + D +++ AG + + NL I+
Sbjct: 62 DVADQQQLRDTFRKVVDHFGRLDILVNNAG----VNNEKNWEKTLQINLVSVISGTYLGL 117
Query: 112 --LLEVMAAHGCKNLVFSSSATAYGWP 136
+ + G + SS A
Sbjct: 118 DYMSKQNGGEGGIIINMSSLAGLMPVA 144
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 47.3 bits (112), Expect = 1e-06
Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 19/157 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +++ G IG T + G + E + + +G +
Sbjct: 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILK-SGVSEKQVNSVVA 64
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPY--------FDNNLTGT 109
D+ + + + T K D +++ AG NL
Sbjct: 65 DVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAV 124
Query: 110 ITLLEVMAAH-----GCKNLVFSSSATAYGWPKVVPC 141
I + + + H G V S A P +
Sbjct: 125 IEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYY 161
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 46.9 bits (111), Expect = 1e-06
Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 31/187 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +++ GG +G+ Q + G + V+ D LD E A +EL G+ + L
Sbjct: 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLD---EEGAATAREL----GDAARYQHL 58
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVG----ESVQKPLPYFDNNLTGTITL- 112
D+ + + V A D +++ AG+ ESV++ + NLTG
Sbjct: 59 DVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGM 118
Query: 113 ---LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHR 169
+ M G ++V SSA + YG SK + + +
Sbjct: 119 KTVIPAMKDAGGGSIVNISSAAGLMGL-----------ALTSSYGASKWGVRGLSKLAAV 167
Query: 170 SDSEWKI 176
+I
Sbjct: 168 ELGTDRI 174
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.8 bits (108), Expect = 3e-06
Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 21/184 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +LV GG IG V + G +E + + +G +T
Sbjct: 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCAR----NEYELNECLSKWQKKGFQVTGSVC 64
Query: 63 DLRDKAALEVVFA------GTKFDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTITL 112
D + E + G K D +I+ G ++ F NL L
Sbjct: 65 DASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHL 124
Query: 113 LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDS 172
++ + + + Y +K + ++ R++ +
Sbjct: 125 SQLAHPLLKAS-------GCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWA 177
Query: 173 EWKI 176
I
Sbjct: 178 SDGI 181
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 45.8 bits (108), Expect = 3e-06
Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 19/154 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
LV GG IG V +L G ++ + +G +
Sbjct: 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSR----NQKELNDCLTQWRSKGFKVEASVC 64
Query: 63 DLRDKAALEVVFA------GTKFDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTITL 112
DL ++ + + K + +++ AG+ E+ + + N L
Sbjct: 65 DLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHL 124
Query: 113 LEV-----MAAHGCKNLVFSSSATAYGWPKVVPC 141
+ A+ + SS + A P
Sbjct: 125 SVLAHPFLKASERGNVVFISSVSGALAVPYEAVY 158
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (107), Expect = 4e-06
Identities = 22/165 (13%), Positives = 50/165 (30%), Gaps = 2/165 (1%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ +V GG IG V +LL G V+ L+ A L + + +
Sbjct: 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQ 72
Query: 62 LDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA-HG 120
++R++ + + T + G P + + + + +
Sbjct: 73 CNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYM 132
Query: 121 CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICR 165
CK + S G + + G ++ + + +
Sbjct: 133 CKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTK 177
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 45.0 bits (106), Expect = 4e-06
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 20/153 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV GG +G V LL G K D I A ++LA G F +
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSD-------INEAAGQQLAAELGERSMFVRH 59
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTITL- 112
D+ +A +V A + +++ AG+ G+ L F N
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGC 119
Query: 113 ---LEVMAAHGCKNLVFSSSATAYGWPKVVPCT 142
+ M G + +S ++ + +
Sbjct: 120 QQGIAAMKETGGSIINMASVSSWLPIEQYAGYS 152
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 45.0 bits (106), Expect = 5e-06
Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 12/130 (9%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K++++ G IG + G + + ++ E ++ + AG +
Sbjct: 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILK-AGVPAEKINAVVA 63
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPY------FDNNLTGTIT 111
D+ + + + + T K D +++ AG + P F N I
Sbjct: 64 DVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIE 123
Query: 112 LLEVMAAHGC 121
+ + H
Sbjct: 124 MTQKTKEHLI 133
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (104), Expect = 9e-06
Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 34/177 (19%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ++V GG IG+ V + G + V+ D + + L + F
Sbjct: 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICD-------KDESGGRALEQ-ELPGAVFILC 58
Query: 63 DLRDKAALEVVFA-----GTKFDAVIHFAGLKAVGESVQKPLPY-----FDNNLTGTITL 112
D+ + ++ + + + D V++ AG + ++ + NL GT TL
Sbjct: 59 DVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTL 118
Query: 113 ----LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICR 165
L + + SS A G PY +K + + +
Sbjct: 119 TKLALPYLRKSQGNVINISSLVGAIGQ------------AQAVPYVATKGAVTAMTK 163
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 43.5 bits (102), Expect = 1e-05
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHK 61
+ LV GG +G L G VV NL+ ASE A ++L G +
Sbjct: 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA----QKLTEKYGVETMAFR 61
Query: 62 LDLRDKAALEVVFAGT-----KFDAVIHFAG 87
D+ + ++ + K D V++ AG
Sbjct: 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAG 92
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 14/130 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ++ GG IG + + G K ++ + E A V + + F +
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----PDQIQFFQH 61
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYF----DNNLTGTITLL 113
D D+ +F T +++ AG+ + + NL G
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGT 121
Query: 114 EVMAAHGCKN 123
+
Sbjct: 122 RLGIQRMKNK 131
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 30/177 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ +L+ G IG T + K V+ D + E AK K L G + +
Sbjct: 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----GAKVHTFVV 63
Query: 63 DLRDKAALEVVFAGTK-----FDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTITLL 113
D ++ + K +++ AG+ + P + N+
Sbjct: 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTT 123
Query: 114 EVMAAHGCKN-----LVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICR 165
+ KN + +S+A P + Y SK +
Sbjct: 124 KAFLPAMTKNNHGHIVTVASAAGHVSVPF------------LLAYCSSKFAAVGFHK 168
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.7 bits (100), Expect = 3e-05
Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 17/167 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
LV G IG TV L G K V V + + LA + + +
Sbjct: 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVT-------RTNSDLVSLAK-ECPGIEPVCV 57
Query: 63 DLRDKAALEVVFAGT-KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121
DL D A E G D +++ A + +P + + +
Sbjct: 58 DLGDWDATEKALGGIGPVDLLVNNA-----ALVIMQPFLEVTKEAFDRSFSVNLRSVFQV 112
Query: 122 KNLVFSSSATAYGWPKVVPCT---EEFPLQAMNPYGRSKLFIEEICR 165
+V +V + + Y +K + + +
Sbjct: 113 SQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTK 159
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ +L+ GG +G T ++L G K +VD E + A V E A +
Sbjct: 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP--DAEVLTTVA 62
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAG 87
D+ D+A +E T + D + AG
Sbjct: 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAG 92
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
LV GG IG V +L G + +E + + E+ +G N+
Sbjct: 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSR----NEKELDECLEIWREKGLNVEGSVC 62
Query: 63 DLRDKAALEVVFA------GTKFDAVIHFA 86
DL + + + K + +++ A
Sbjct: 63 DLLSRTERDKLMQTVAHVFDGKLNILVNNA 92
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 42.0 bits (98), Expect = 5e-05
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K I+V GG IG + G V+ ++ AV +++ G ++
Sbjct: 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVI---YRSAADAVEVTEKVGKEFGVKTKAYQC 66
Query: 63 DLRDKAALEVVFA 75
D+ + +
Sbjct: 67 DVSNTDIVTKTIQ 79
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.9 bits (98), Expect = 6e-05
Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 26/189 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-----SEIAVAKVKELAGYQGNNM 57
+ +LV G G +G L G VV D + A KV E +G
Sbjct: 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKA 67
Query: 58 TFHKLDLRDKAAL--EVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDN----NLTGTIT 111
+ + L + + D V++ AG+ + +D +L G+
Sbjct: 68 VANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQ 127
Query: 112 L----LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDV 167
+ + M ++ ++SA+ + Y +KL + + +
Sbjct: 128 VTRAAWDHMKKQNYGRIIMTASASGI-----------YGNFGQANYSAAKLGLLGLANTL 176
Query: 168 HRSDSEWKI 176
+ I
Sbjct: 177 VIEGRKNNI 185
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 41.5 bits (97), Expect = 6e-05
Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 22/147 (14%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +L+ G IG T+ G + V D I ++E A + +
Sbjct: 6 KAVLITGAAHGIGRATLELFAKEGARLVACD-------IEEGPLREAA--EAVGAHPVVM 56
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYFDNNLT--------GT 109
D+ D A++E FA + D V+H+AG+ + PL ++ L
Sbjct: 57 DVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVA 116
Query: 110 ITLLEVMAAHGCKNLVFSSSATAYGWP 136
E M ++V ++S G
Sbjct: 117 KAASEAMREKNPGSIVLTASRVYLGNL 143
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 22/151 (14%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ++ GG G IG T + G K V+ D D+ + + + ++F
Sbjct: 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-----PDVISFVHC 61
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVG------ESVQKPLPYFDNNLTGTIT 111
D+ + + T K D + G+ + + D N+ G
Sbjct: 62 DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 121
Query: 112 LLEVMAAH------GCKNLVFSSSATAYGWP 136
+ + A G S S+ G
Sbjct: 122 VAKHAARVMIPAKKGSIVFTASISSFTAGEG 152
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV GG +G+ V ++ G K V D LD + K +A + + L
Sbjct: 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILD-------EEGKAMAAELADAARYVHL 59
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPYF----DNNLTGTITLL 113
D+ A + +++ AG+ +G L + D NLTG +
Sbjct: 60 DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGI 119
Query: 114 EVMAAHGCKN 123
+ +
Sbjct: 120 RAVVKPMKEA 129
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ILV G IG + G V VD + E
Sbjct: 6 KTILVTGAASGIGRAALDLFAREGASLVAVD-------REERLLAEAVAALEAEAIAVVA 58
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAG 87
D+ D A+E VFA + V HFAG
Sbjct: 59 DVSDPKAVEAVFAEALEEFGRLHGVAHFAG 88
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 16/153 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K L G IG ++L G VV N ++S+ A V EL G +
Sbjct: 7 KVALTTGAGRGIGRGIAIELGRRGAS--VVVNYGSSSKAAEEVVAELKKL-GAQGVAIQA 63
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQKPLPY----FDNNLTGTITL- 112
D+ + + +F D V+ +G++ + ++ F+ N G +
Sbjct: 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 123
Query: 113 ---LEVMAAHGCKNLVFSSSATAYGWPKVVPCT 142
L+ G L S +A G P
Sbjct: 124 QQGLKHCRRGGRIILTSSIAAVMTGIPNHALYA 156
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 39.6 bits (92), Expect = 3e-04
Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 31/187 (16%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
KN++ + +G IG T +L+ K V+ + A + A N+TFH
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT---ALAELKAINPKVNITFHTY 62
Query: 63 DLRDKAAL------EVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVM 116
D+ A ++ D +I+ AG+ + + N TG + +
Sbjct: 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIER----TIAINFTGLVNTTTAI 118
Query: 117 AAHGCK-------NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHR 169
K + S T + + + Y SK + + +
Sbjct: 119 LDFWDKRKGGPGGIIANICSVTGFN-----------AIHQVPVYSASKAAVVSFTNSLAK 167
Query: 170 SDSEWKI 176
+
Sbjct: 168 LAPITGV 174
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 3e-04
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVV 32
K++ ++G G G + ++L G + V
Sbjct: 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVT 44
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K ++ G IG + G VV D +A+ V ++++L G +
Sbjct: 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----GGQAFACRC 67
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAG 87
D+ + L + K D +++ AG
Sbjct: 68 DITSEQELSALADFAISKLGKVDILVNNAG 97
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 39.7 bits (92), Expect = 3e-04
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 6/166 (3%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K + GG +G L G + V+ ++ A ++++ GN + +
Sbjct: 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIA---SRKMDVLKATAEQISSQTGNKVHAIQC 82
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+RD ++ + A + + P N TIT + +
Sbjct: 83 DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVT 142
Query: 123 NLVFSSSATAYGWPKVVPCT---EEFPLQAMNPYGRSKLFIEEICR 165
+ A + T E + P +K +E + +
Sbjct: 143 LEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSK 188
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 39.4 bits (91), Expect = 3e-04
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +V G IG L G V+ D A V LA G + +
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVR--AGLAAQHGVKVLYDGA 62
Query: 63 DLRDKAALEVVFA 75
DL A+ +
Sbjct: 63 DLSKGEAVRGLVD 75
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 39.2 bits (91), Expect = 3e-04
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV G IG L + + + + V ++K G + +
Sbjct: 11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF----GYESSGYAG 66
Query: 63 DLRDKAALEVVFAGTKFD 80
D+ K + V +
Sbjct: 67 DVSKKEEISEVINKILTE 84
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (91), Expect = 4e-04
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 13/126 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ +LV G IG TV L G + V V A + L + + +
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVS-------RTQADLDSLVR-ECPGIEPVCV 59
Query: 63 DLRDKAALEVVFAGT-KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA 117
DL D A E D +++ A + + + + F+ NL I + +++A
Sbjct: 60 DLGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVA 119
Query: 118 AHGCKN 123
Sbjct: 120 RGLIAR 125
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.6 bits (88), Expect = 5e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVV 32
K +L+ G G G H + ++L V+
Sbjct: 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVI 32
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV G G IG T L+L G ++D A E A A V+E G +
Sbjct: 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----GVEARSYVC 61
Query: 63 DLRDKAALE 71
D+ + A+
Sbjct: 62 DVTSEEAVI 70
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 38.6 bits (89), Expect = 6e-04
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 16/170 (9%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K +++ G +G ++ K VV + E V E G K
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVN---YRSKEDEANSVLEEIKKVGGEAIAVKG 64
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK 122
D+ ++ + + A+ F L + + L ++ E+ + K
Sbjct: 65 DVTVESDVINLVQ----SAIKEFGKLDVM---------INNAGLENPVSSHEMSLSDWNK 111
Query: 123 NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDS 172
+ + + G + + E ++ S VH + S
Sbjct: 112 VIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAAS 161
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 38.2 bits (88), Expect = 9e-04
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV G IG ++L G K +V N++E A V + G++ K
Sbjct: 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYA--NSTESAEEVVAAIKKN-GSDAACVKA 75
Query: 63 DLRDKAALEVVFA 75
++ + +F
Sbjct: 76 NVGVVEDIVRMFE 88
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 37.9 bits (87), Expect = 0.001
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K L+ G IG + G + + D I + + A G L
Sbjct: 6 KTALITGSARGIGRAFAEAYVREGARVAIAD-------INLEAARATAAEIGPAACAIAL 58
Query: 63 DLRDKAALEVVFA 75
D+ D+A+++ A
Sbjct: 59 DVTDQASIDRCVA 71
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.1 bits (85), Expect = 0.001
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 15/148 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
+ +LV GG G +GS V + +D ++N A VK +F +
Sbjct: 3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKM-------TDSFTEQ 55
Query: 63 DLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPY-----FDNNLTG---TITLLE 114
+ A + + K DA++ AG A G + K L + ++ + L
Sbjct: 56 ADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 115
Query: 115 VMAAHGCKNLVFSSSATAYGWPKVVPCT 142
G + + A G P ++
Sbjct: 116 KHLKEGGLLTLAGAKAALDGTPGMIGYG 143
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 24/187 (12%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL--DNASEIAVAKVKELAGYQGNNMTFH 60
+L+ G IG H ++L ++ V D ++ + + ++
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 61 KLDLRDKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFD-------NNLTGTITL- 112
+LD+RD ++ V +G D N+ GT+ +
Sbjct: 63 QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 113 ---LEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHR 169
L M G ++ + S L + Y SK +E +C +
Sbjct: 123 QAFLPDMKRRGSGRVLVTGSVGGL-----------MGLPFNDVYCASKFALEGLCESLAV 171
Query: 170 SDSEWKI 176
+ +
Sbjct: 172 LLLPFGV 178
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 36.7 bits (84), Expect = 0.002
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62
K LV G IG L+L+ G+ + D D ++ +++ + G + K+
Sbjct: 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----GGHAVAVKV 57
Query: 63 DLRDKAALEVVFAGT-----KFDAVIHFAG 87
D+ D+ + FD +++ AG
Sbjct: 58 DVSDRDQVFAAVEQARKTLGGFDVIVNNAG 87
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 347 | |||
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.96 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.96 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.95 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.94 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.91 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.91 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.9 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.9 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.9 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.9 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.9 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.9 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.9 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.9 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.9 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.89 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.89 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.89 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.89 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.89 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.89 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.89 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.89 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.89 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.89 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.89 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.89 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.89 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.89 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.88 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.88 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.88 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.88 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.87 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.87 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.87 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.87 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.86 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.86 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.86 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.86 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.86 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.86 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.84 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.84 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.84 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.84 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.83 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.83 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.83 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.82 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.82 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.81 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.8 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.8 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.8 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.78 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.77 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.77 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.76 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.75 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.75 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.74 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.73 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.72 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.68 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.66 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.62 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.55 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.54 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.53 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.37 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.61 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.58 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.42 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.35 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.26 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.25 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.19 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.18 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.15 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.11 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.1 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.09 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.04 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.04 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.03 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.03 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.01 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.98 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.93 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.92 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.92 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.91 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.9 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.9 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.87 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.83 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.75 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.66 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.63 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.54 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.54 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.54 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.54 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.5 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.45 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.45 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.42 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.41 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.41 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.4 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.38 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.37 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.35 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.34 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.34 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.27 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.25 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.23 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.15 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 97.14 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.14 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.08 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.07 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.07 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.01 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.0 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.97 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.96 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.89 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.88 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.86 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.83 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.82 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.8 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.77 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.77 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.76 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.76 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.73 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.72 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.7 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.69 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.67 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.63 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.62 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.58 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.52 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.48 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.47 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.43 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.37 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.17 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.16 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.12 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.04 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.95 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.9 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 95.88 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.74 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.69 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.69 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.68 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.66 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.65 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.62 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.6 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.57 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.41 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.36 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.34 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.24 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.2 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.19 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.19 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.12 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.09 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.08 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.06 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.05 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.05 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.04 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 94.95 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.94 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.92 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.9 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.86 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.84 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.8 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.76 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.68 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.65 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.65 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.54 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.49 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 94.37 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 94.33 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.32 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 94.31 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.31 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.28 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.26 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 94.17 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.15 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.13 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.1 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.05 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.02 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 93.94 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.93 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.73 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.73 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.64 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.48 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 93.38 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 93.34 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.31 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.25 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.23 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.22 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.14 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.06 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.0 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.99 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 92.93 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.89 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 92.77 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.63 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.44 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 92.41 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.34 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.26 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 91.76 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.62 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 91.62 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 91.54 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.35 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.14 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 90.86 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.78 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 90.61 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 90.58 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 90.35 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 90.28 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 90.22 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.1 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 90.1 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 89.77 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 89.7 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 89.4 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 89.06 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 88.55 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.52 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.5 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.44 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 87.83 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 87.65 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 87.57 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 87.32 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.2 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 86.99 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 86.91 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 86.89 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 86.77 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.41 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 86.37 | |
| d1jyea_ | 271 | Lac-repressor (lacR) core (C-terminal domain) {Esc | 86.28 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 86.24 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 86.23 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 85.85 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 85.82 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 85.35 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 84.83 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 84.66 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 84.63 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 84.6 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 84.46 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 83.84 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 83.83 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.37 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 83.08 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 82.82 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 82.46 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 81.95 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 81.37 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 81.25 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 81.06 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 81.01 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 80.95 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 80.77 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 80.33 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.06 |
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-54 Score=391.04 Aligned_cols=335 Identities=53% Similarity=0.928 Sum_probs=283.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|||||||||||||++|++.|+++||+|++++|............... ...++.++.+|++|.+.+.++++..++|+|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL---GGKHPTFVEGDIRNEALMTEILHDHAIDTV 77 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH---HTSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh---cCCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence 67999999999999999999999999999987544332222222222 135889999999999999999987789999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCC-CCCCCCchhhhHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEF-PLQAMNPYGRSKLFIE 161 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~-~~~~~~~Y~~sK~~~e 161 (347)
||+||......+.+++...+++|+.|+.+++++|++.+++++|++||..+|+.....+..|+. +..|.++|+.+|..+|
T Consensus 78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e 157 (338)
T d1udca_ 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhh
Confidence 999997765566678889999999999999999999999999999999999877666655554 4578999999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
.++.++..+..+++++++|++++|||++.+. +..+......+.+.+.+.+.+....+.++|...+..++.+.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~ 237 (338)
T d1udca_ 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHH
T ss_pred HHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEe
Confidence 9999887776789999999999999987655 445555566788877777777767788888777777789999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccc
Q 040584 241 DLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY 320 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~ 320 (347)
|+++++..+...... ...+++||+++++++|+.|+++.+.+.+|.+.++...+.++.......+|++|+++.|||+|++
T Consensus 238 D~~~~~~~~~~~~~~-~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwkp~~ 316 (338)
T d1udca_ 238 DLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR 316 (338)
T ss_dssp HHHHHHHHHHHHHTT-CCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCCC
T ss_pred ehhhhcccccccccc-ccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCCcCC
Confidence 999998887775332 3556899999999999999999999999998887777777777777889999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCCC
Q 040584 321 GIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 321 ~~~~~i~~~~~~~~~~~~~~~ 341 (347)
+++++|+++++|++.|+.+|-
T Consensus 317 ~l~egi~~ti~w~~~~~~~~~ 337 (338)
T d1udca_ 317 TLDEMAQDTWHWQSRHPQGYP 337 (338)
T ss_dssp CHHHHHHHHHHHHHHCTTCSC
T ss_pred CHHHHHHHHHHHHHhchhhCC
Confidence 999999999999999988774
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-52 Score=378.97 Aligned_cols=337 Identities=61% Similarity=1.018 Sum_probs=283.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc------hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN------ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
|.|||||||||||||++|+++|+++||+|++++|... ......+.+... ...++.++.+|++|.+.+.+++
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~l~~~~ 77 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL---TGRSVEFEEMDILDQGALQRLF 77 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH---HTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh---cCCCcEEEEeeccccccccccc
Confidence 8899999999999999999999999999999864222 122222333322 2468899999999999999998
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCC-CCCCCCCch
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEE-FPLQAMNPY 153 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~-~~~~~~~~Y 153 (347)
....+++++|+||......+..+|.+.++.|+.++.++++++++.++++||++||+.+||........++ ....+.++|
T Consensus 78 ~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y 157 (346)
T d1ek6a_ 78 KKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPY 157 (346)
T ss_dssp HHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHH
T ss_pred cccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChH
Confidence 8777889999999876666677888999999999999999999999999999999999987655444333 345677899
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCce
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
+.+|..+|+.++++++...+++.+++|++++|||..++. +....+....+.+.+...+.++...+.++|.+.+++++.+
T Consensus 158 ~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~ 237 (346)
T d1ek6a_ 158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCe
Confidence 999999999999988776689999999999999987655 4445555666788777767777778888887777778999
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHH
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAER 312 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 312 (347)
.|+|+|++|+|+++..++..... ...+++||+++++.+|+.|+++.+++.+|.+.++...+.++.+.....+|++|+++
T Consensus 238 ~Rdfi~v~D~a~~~~~~~~~~~~-~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~~~ 316 (346)
T d1ek6a_ 238 VRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQE 316 (346)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTT-TCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHH
T ss_pred eEeEEEEEeccchhhhhcccccc-ccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHHHH
Confidence 99999999999999988766332 34668999999999999999999999999988888888788878888899999999
Q ss_pred hcCCcccccHHHHHHHHHHHHhhCCCCCC
Q 040584 313 ELNWKAKYGIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 313 ~lg~~p~~~~~~~i~~~~~~~~~~~~~~~ 341 (347)
.|||+|+++++|+|+++++||++|+.+.+
T Consensus 317 ~lgw~p~~slee~I~~~i~w~~~n~~~~~ 345 (346)
T d1ek6a_ 317 ELGWTAALGLDRMCEDLWRWQKQNPSGFG 345 (346)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHCTTCSC
T ss_pred HHCCCcCCCHHHHHHHHHHHHHhCHhhcC
Confidence 99999999999999999999999998765
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-52 Score=377.54 Aligned_cols=337 Identities=53% Similarity=0.934 Sum_probs=271.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.|.|||||||||||++|+++|+++||+|+++++............... ...+++++.+|++|.+.+.+++...++|+
T Consensus 1 ~K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 77 (347)
T d1z45a2 1 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL---TKHHIPFYEVDLCDRKGLEKVFKEYKIDS 77 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH---HTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhh---cccCCeEEEeecCCHHHHHHHHhccCCCE
Confidence 367999999999999999999999999999986554432222222222 14578999999999999999998778999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC----CCCCCCCCCCCCCCCchhhhH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP----KVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~----~~~~~~e~~~~~~~~~Y~~sK 157 (347)
|||+||........+.+..+..+|+.++.+++++|++.+++|||++||..+||.. ...+.+|+.+..|.++|+.+|
T Consensus 78 VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK 157 (347)
T d1z45a2 78 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTK 157 (347)
T ss_dssp EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHH
T ss_pred EEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHH
Confidence 9999998765556677788999999999999999999999999999999999864 345678888889999999999
Q ss_pred HHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCC-CCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 158 LFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGK-GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 158 ~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
.++|++++++.+.. .+++++++|++++||+.+.+. |..+......+.+.+.+.+.++..++.++|......++...+|
T Consensus 158 ~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d 237 (347)
T d1z45a2 158 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237 (347)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeee
Confidence 99999999986542 478999999999999988766 5555556667888777777776666777775554556778899
Q ss_pred eeeHHHHHHHHHHHHHhcC---CCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHH
Q 040584 236 YIHVVDLADGHIAALRKLD---DPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAER 312 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~---~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 312 (347)
++++.|++.++..+++... .....+++||+++++++|+.|+++.+.+.+|.+.++...+.++.......+|++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~~~ 317 (347)
T d1z45a2 238 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKR 317 (347)
T ss_dssp EEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHHH
T ss_pred eeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHHHH
Confidence 9999999999988876422 1234578999999999999999999999999988877666666666677889999999
Q ss_pred hcCCcccccHHHHHHHHHHHHhhCCCCCC
Q 040584 313 ELNWKAKYGIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 313 ~lg~~p~~~~~~~i~~~~~~~~~~~~~~~ 341 (347)
+|||+|+++++|+|+++++|+++||++|.
T Consensus 318 ~lGw~p~~~lee~i~~ti~w~~~np~~~~ 346 (347)
T d1z45a2 318 ELKWQTELQVEDSCKDLWKWTTENPFGYQ 346 (347)
T ss_dssp HTCCCCCCCHHHHHHHHHHHHHHCTTCSC
T ss_pred HHCCCCCCCHHHHHHHHHHHHHhChhcCc
Confidence 99999999999999999999999999885
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-53 Score=383.41 Aligned_cols=315 Identities=22% Similarity=0.263 Sum_probs=248.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH-HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE-IAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.|+|||||||||||++|+++|+++||+|++++|...... ...+.+.........+++++.+|++|.+++.+++++.++|
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 478999999999999999999999999999998654211 1111121111122468899999999999999999876789
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC---CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC---KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSK 157 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~---~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK 157 (347)
+|||+||......+.+++..++++|+.||.+|+++|++.++ .||||+||+.|||.....+++|+++..|.++|+.+|
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK 160 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHH
Confidence 99999998877777788889999999999999999998765 379999999999988888999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 158 LFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
.++|++++.+++++ +++++++||+++|||.. ........+...+.+++.++...+ .+| ++++.++|+
T Consensus 161 ~~~E~~~~~~~~~~-~l~~~ilR~~~vyGp~~-----~~~~~~~~i~~~~~~~~~~~~~~~-~~g------~~~~~r~~~ 227 (357)
T d1db3a_ 161 LYAYWITVNYRESY-GMYACNGILFNHESPRR-----GETFVTRKITRAIANIAQGLESCL-YLG------NMDSLRDWG 227 (357)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHTTSCCCE-EES------CTTCEECCE
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeccccCCCC-----CcCCCchHHHHHHHHHHhCCCceE-EEC------CCCeeecce
Confidence 99999999999886 89999999999999842 222223345556777777765544 456 789999999
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccC----------------C-------
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS----------------G------- 294 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~----------------~------- 294 (347)
|++|+++++..+++. ..+++||+++++++|+.|+++.+.+.+|...++... +
T Consensus 228 ~v~D~~~a~~~~~~~-----~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (357)
T d1db3a_ 228 HAKDYVKMQWMMLQQ-----EQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDV 302 (357)
T ss_dssp EHHHHHHHHHHTTSS-----SSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCE
T ss_pred eechHHHHHHHHHhC-----CCCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCce
Confidence 999999999988875 245899999999999999999999999854321100 0
Q ss_pred --------CCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHh
Q 040584 295 --------RRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWAS 334 (347)
Q Consensus 295 --------~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~ 334 (347)
.++.+.....+|++|+++.|||+|+++++|+|+++++++.
T Consensus 303 ~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l 350 (357)
T d1db3a_ 303 IIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDL 350 (357)
T ss_dssp EEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred eEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence 1222334456799999999999999999999999986543
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=6.8e-52 Score=372.24 Aligned_cols=311 Identities=30% Similarity=0.443 Sum_probs=258.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEE------EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV------VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
|||||||||||||++|+++|+++||+|. .+++....... ..+... ....++.++.+|+.+.........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~- 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPV--DADPRLRFVHGDIRDAGLLARELR- 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGG--TTCTTEEEEECCTTCHHHHHHHTT-
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhhh--hcCCCeEEEEeccccchhhhcccc-
Confidence 6899999999999999999999998654 34332211110 001111 124578999999999998888777
Q ss_pred CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhh
Q 040584 77 TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRS 156 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~s 156 (347)
.+|+|+|+|+..........+...+++|+.++.+++++|++.++++||++||..+||.....+++|+++..|.++|+.+
T Consensus 76 -~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~s 154 (322)
T d1r6da_ 76 -GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAAS 154 (322)
T ss_dssp -TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHH
T ss_pred -ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCCCCCCCCHHHHH
Confidence 6999999998766555667788899999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
|.++|.+++.+++++ +++++++||++||||. ... ..+++ ++.++..++ .+.++| +|++.++
T Consensus 155 K~~~E~~~~~~~~~~-~~~~~~lR~~~vyGp~-----~~~----~~~i~~~i~~~~~~~--~i~v~~------~g~~~r~ 216 (322)
T d1r6da_ 155 KAGSDLVARAYHRTY-GLDVRITRCCNNYGPY-----QHP----EKLIPLFVTNLLDGG--TLPLYG------DGANVRE 216 (322)
T ss_dssp HHHHHHHHHHHHHHH-CCCEEEEEECEEECTT-----CCT----TSHHHHHHHHHHTTC--CEEEET------TSCCEEE
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeeeEECcC-----CCc----CcHHHHHHHHHHcCC--CcEEec------CCCeEEc
Confidence 999999999999886 9999999999999984 222 23444 677777776 466777 7899999
Q ss_pred eeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCc-ccCCCCCCCchhhccChHHHHHhc
Q 040584 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL-VKSGRRPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~l 314 (347)
|+|++|+|+++..++++ ...+++||+++++++++.|+++.+++.+|.+.+. .....++.......+|++|+++.|
T Consensus 217 ~i~v~D~a~ai~~~~~~----~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (322)
T d1r6da_ 217 WVHTDDHCRGIALVLAG----GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIEREL 292 (322)
T ss_dssp EEEHHHHHHHHHHHHHH----CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHH
T ss_pred cEEHHHHHHHHHHHHhC----CCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHH
Confidence 99999999999999998 2346899999999999999999999999988653 334445666667789999999999
Q ss_pred CCcccccHHHHHHHHHHHHhhCCCCCC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKNPYGYE 341 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~~~~~~ 341 (347)
||+|+++++|+|+++++||++|+..|+
T Consensus 293 g~~p~~~~eegI~~~i~w~~~n~~~~~ 319 (322)
T d1r6da_ 293 GYRPQVSFADGLARTVRWYRENRGWWE 319 (322)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHHhHh
Confidence 999999999999999999999875443
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-52 Score=372.80 Aligned_cols=301 Identities=24% Similarity=0.406 Sum_probs=246.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+||||||||+||||++|+++|+++||+|++++|......... ... ....++++...|+.+ .++. ++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~---~~~--~~~~~~d~~~~~~~~-----~~~~--~~d~ 68 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV---EHW--IGHENFELINHDVVE-----PLYI--EVDQ 68 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT---GGG--TTCTTEEEEECCTTS-----CCCC--CCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH---HHh--cCCCceEEEehHHHH-----HHHc--CCCE
Confidence 589999999999999999999999999999987443322111 111 112345555555533 3444 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCC-----CCCCCCCchhhh
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEE-----FPLQAMNPYGRS 156 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~-----~~~~~~~~Y~~s 156 (347)
|||+|+......+..++...+++|+.++.+|+++|++.++ |+||+||.+|||.....+.+|+ +|..|.++|+.+
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~s 147 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEG 147 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHH
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHH
Confidence 9999997765556678888999999999999999999887 8999999999998766666654 466788999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRD 235 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 235 (347)
|.++|.+++.+++.+ +++++++||++||||+.... ...++ .++.++..|+ .+.++| ++.+.++
T Consensus 148 K~~~E~~~~~~~~~~-~~~~~~lR~~~vyGp~~~~~-------~~~~i~~~i~~~~~g~--~i~i~~------~g~~~r~ 211 (312)
T d2b69a1 148 KRVAETMCYAYMKQE-GVEVRVARIFNTFGPRMHMN-------DGRVVSNFILQALQGE--PLTVYG------SGSQTRA 211 (312)
T ss_dssp HHHHHHHHHHHHHHH-CCCEEEEEECCEECTTCCTT-------CCCHHHHHHHHHHHTC--CEEEES------SSCCEEE
T ss_pred HHHHHHHHHHHHHHh-CCcEEEEEeeeEECCCCCCC-------CccHHHHHHHHHHcCC--CeEEeC------CCCeeEc
Confidence 999999999999886 99999999999999853211 12244 4778888876 466667 7899999
Q ss_pred eeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcC
Q 040584 236 YIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELN 315 (347)
Q Consensus 236 ~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 315 (347)
|+|++|++++++.+++. ..+++||+++++.+++.++++.+++.+|.+.++...+..+.......+|++|+++.||
T Consensus 212 ~i~v~D~~~~~~~~~~~-----~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 286 (312)
T d2b69a1 212 FQYVSDLVNGLVALMNS-----NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 286 (312)
T ss_dssp CEEHHHHHHHHHHHHTS-----SCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHC
T ss_pred cEEHHHHHHHHHHHHhh-----ccCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHC
Confidence 99999999999988865 2347899999999999999999999999998887777777777788899999999999
Q ss_pred CcccccHHHHHHHHHHHHhhC
Q 040584 316 WKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 316 ~~p~~~~~~~i~~~~~~~~~~ 336 (347)
|+|+++++++|+++++||+++
T Consensus 287 w~p~~~l~~~I~~~i~w~~~~ 307 (312)
T d2b69a1 287 WEPVVPLEEGLNKAIHYFRKE 307 (312)
T ss_dssp CCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999875
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4.9e-51 Score=371.94 Aligned_cols=311 Identities=25% Similarity=0.376 Sum_probs=250.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEE-EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|||||||||||||++|+++|+++||+|+ ++++...... ...+..+. ...+++++.+|++|...+.++++...+|+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~--~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ 76 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSDIS--ESNRYNFEHADICDSAEITRIFEQYQPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTTTT--TCTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc--HHHHHhhh--hcCCcEEEEccCCCHHHHHHHHHhCCCCE
Confidence 5899999999999999999999999864 5554322211 01111111 14588999999999999999998767999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcC---------CCeEEEeccccccCCCCCC----------CCC
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHG---------CKNLVFSSSATAYGWPKVV----------PCT 142 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~---------~~~iv~~SS~~~yg~~~~~----------~~~ 142 (347)
|||+||......+..++...+++|+.++.+++++|++.+ +++||++||..+||..... ...
T Consensus 77 VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~ 156 (361)
T d1kewa_ 77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT 156 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC
T ss_pred EEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcc
Confidence 999999866555667888999999999999999998764 3589999999999865432 224
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEe
Q 040584 143 EEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVF 221 (347)
Q Consensus 143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 221 (347)
|..+..|.+.|+.+|.++|.+++.+.+++ +++++++||++||||. ... ..++ .++.++..|+ ++.++
T Consensus 157 e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~-~i~~~~lR~~~vyGp~-----~~~----~~~i~~~i~~~~~g~--~~~v~ 224 (361)
T d1kewa_ 157 ETTAYAPSSPYSASKASSDHLVRAWRRTY-GLPTIVTNCSNNYGPY-----HFP----EKLIPLVILNALEGK--PLPIY 224 (361)
T ss_dssp TTSCCCCCSHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECEEESTT-----CCT----TSHHHHHHHHHHHTC--CEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCEEEEecCceECcC-----CCc----CcHHHHHHHHHHcCC--CcEEe
Confidence 56677899999999999999999999887 9999999999999984 211 2344 4778888776 46667
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCC--------CcccC
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI--------PLVKS 293 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~--------~~~~~ 293 (347)
| +|++.|+|+|++|+|+++..++++ ...+++||+++++.+++.|+++.+.+.++... .+...
T Consensus 225 g------~g~~~r~~i~v~D~a~ai~~~~~~----~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 294 (361)
T d1kewa_ 225 G------KGDQIRDWLYVEDHARALHMVVTE----GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYV 294 (361)
T ss_dssp T------TSCCEEEEEEHHHHHHHHHHHHHH----CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEE
T ss_pred C------CCCeEEeCEEHHHHHHHHHHHHhc----CCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeec
Confidence 7 789999999999999999999998 23458999999999999999999998775332 22223
Q ss_pred CCCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCC
Q 040584 294 GRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYG 339 (347)
Q Consensus 294 ~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~ 339 (347)
+.++.......+|++|+++.|||+|+++++|+|+++++||+.++..
T Consensus 295 ~~~~~~~~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~~ 340 (361)
T d1kewa_ 295 ADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQW 340 (361)
T ss_dssp CCCTTCCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHHH
T ss_pred CCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHHH
Confidence 4455666778899999999999999999999999999999988543
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-49 Score=359.60 Aligned_cols=317 Identities=24% Similarity=0.340 Sum_probs=261.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-YQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.|+|||||||||||++|+++|+++||+|++++|.........+.+..+.. .....+.++.+|+.|...+..... .++
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~--~~~ 93 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GVD 93 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TCS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc--ccc
Confidence 37999999999999999999999999999998765544433333332211 113578899999999998888877 689
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
.|+|+++......+.+++...+++|+.|+.+++++|++.++++||++||..+||.....+.+|++|..|.+.|+.+|.++
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~ 173 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVN 173 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHH
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCCCcchHHHHHH
Confidence 99999987665556778888999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccH-HHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM-PFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
|.+++.+.+.. +++++++||+++|||+. .+.+....++ .++.++..|+ ++.++| +|.+.++|+|+
T Consensus 174 E~~~~~~~~~~-~i~~~ilR~~~v~G~~~-----~~~~~~~~~i~~~~~~~~~g~--~i~~~g------~g~~~r~~i~v 239 (341)
T d1sb8a_ 174 ELYADVFSRCY-GFSTIGLRYFNVFGRRQ-----DPNGAYAAVIPKWTSSMIQGD--DVYING------DGETSRDFCYI 239 (341)
T ss_dssp HHHHHHHHHHH-CCCCEEEEECCEECTTC-----CCCSTTCCHHHHHHHHHHHTC--CCEEES------SSCCEECCEEH
T ss_pred HHHHHHHHHHh-CCCeEEEEeceeeccCc-----CCCCchhhhHHHHHHHHHcCC--ceEEcC------CCCEEEEEEEE
Confidence 99999998876 89999999999999843 2333333354 4677778876 356666 78999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCC-----cccCCCCCCCchhhccChHHHHHhc
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIP-----LVKSGRRPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~~~l 314 (347)
+|++.++..++.... ...+++||+++++..|+.|+++.+.+.++.+.. ....+.++.......+|++|+++.|
T Consensus 240 ~D~~~a~~~~~~~~~--~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~L 317 (341)
T d1sb8a_ 240 ENTVQANLLAATAGL--DARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLL 317 (341)
T ss_dssp HHHHHHHHHHHTCCG--GGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHT
T ss_pred eccchhhhhhhhccc--cccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHH
Confidence 999999999887621 245689999999999999999999999885421 1223344555666778999999999
Q ss_pred CCcccccHHHHHHHHHHHHhhC
Q 040584 315 NWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~~~~ 336 (347)
||+|+++++++|+++++||+..
T Consensus 318 Gw~p~~sl~~gi~~ti~wy~~~ 339 (341)
T d1sb8a_ 318 GYAPKYDVSAGVALAMPWYIMF 339 (341)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999873
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.8e-48 Score=349.48 Aligned_cols=311 Identities=20% Similarity=0.248 Sum_probs=255.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|||||||||||++|+++|+++||+|++++|....... ..+..+. ..+++.++.+|++|...+.+.+....++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~--~~l~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 76 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLRELG--IEGDIQYEDGDMADACSVQRAVIKAQPQEV 76 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccH--HHHHHhc--ccCCcEEEEccccChHHhhhhhcccccccc
Confidence 689999999999999999999999999999987654221 1222221 134789999999999999998887678999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
+|+|+.........++...++.|+.++.+++++|++.+.+ +|++.||..+||.....+.+|++|..|.++|+.+|.++|
T Consensus 77 ~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E 156 (321)
T d1rpna_ 77 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGH 156 (321)
T ss_dssp EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHH
T ss_pred ccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHHHHHHHH
Confidence 9999876655566777889999999999999999998854 899999999999888888899999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
++++.+..++ +++++++||+++|||. .......+.+..++.++..++.+.+ .+| ++++.++|+|++|
T Consensus 157 ~~~~~~~~~~-~~~~~~lr~~~vyGp~-----~~~~~~~~~i~~~~~~~~~~~~~~i-~~g------~g~~~r~~i~v~D 223 (321)
T d1rpna_ 157 WITVNYRESF-GLHASSGILFNHESPL-----RGIEFVTRKVTDAVARIKLGKQQEL-RLG------NVDAKRDWGFAGD 223 (321)
T ss_dssp HHHHHHHHHH-CCCEEEEEECCEECTT-----SCTTSHHHHHHHHHHHHHTTSCSCE-EES------CTTCEEECEEHHH
T ss_pred HHHHHHHhhc-CCcEEEEEEecccCCC-----ccccccHHHHHHHHHHHHhCCCCcE-EEC------CCCeEEccEEeHH
Confidence 9999998886 8999999999999983 2122222234556777777665443 345 7899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCccc----CCCCCCCchhhccChHHHHHhcCCc
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK----SGRRPGDAEIVYASTEKAERELNWK 317 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~----~~~~~~~~~~~~~d~~k~~~~lg~~ 317 (347)
+|+++..++++. .++.||+++++..|+.++++.+.+.+|.+.+... ...++.+.....+|++|++++|||+
T Consensus 224 ~~~~~~~~~~~~-----~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~ 298 (321)
T d1rpna_ 224 YVEAMWLMLQQD-----KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWK 298 (321)
T ss_dssp HHHHHHHHHHSS-----SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCC
T ss_pred HHHHHHHHHhcC-----CcCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCC
Confidence 999999999872 2478999999999999999999999997653221 2234455566788999999999999
Q ss_pred ccccHHHHHHHHHHHHhh
Q 040584 318 AKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 318 p~~~~~~~i~~~~~~~~~ 335 (347)
|+++++|+|+++++|+++
T Consensus 299 P~~~l~e~i~~tv~~~l~ 316 (321)
T d1rpna_ 299 PRTSLDELIRMMVEADLR 316 (321)
T ss_dssp CCSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999875
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1e-48 Score=354.94 Aligned_cols=311 Identities=24% Similarity=0.316 Sum_probs=250.9
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC--CchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL--DNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
+||+|||||||||||++|+++|+++||+|.++.+. ..... ...+. .....+++++.+|++|.+.+.+++. +
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~--~~~~~---~~~~~~i~~~~~Di~d~~~~~~~~~--~ 73 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLE---AILGDRVELVVGDIADAELVDKLAA--K 73 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTG---GGCSSSEEEEECCTTCHHHHHHHHT--T
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc--HHHHH---HhhcCCeEEEEccCCCHHHHHHHHh--h
Confidence 47999999999999999999999999886555432 11110 00011 1124689999999999999999998 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCC------------CCCCCCCCCC
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWP------------KVVPCTEEFP 146 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~------------~~~~~~e~~~ 146 (347)
+|.|+|+|+......+..++.+.+++|+.++.+++++++..+. ++|++||..+||.. .....+|+++
T Consensus 74 ~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~ 152 (346)
T d1oc2a_ 74 ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN 152 (346)
T ss_dssp CSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSC
T ss_pred hhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCC
Confidence 8999999997765556678889999999999999999999875 89999999999742 1234566777
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
..|.+.|+.+|.++|.+++.++++. +++++++||++||||.. . ....+..++.....+.. +.++|
T Consensus 153 ~~p~s~Y~~sK~~~E~~~~~~~~~~-~i~~~ilR~~~vyGp~~-----~---~~~~~~~~i~~~~~~~~--~~i~~---- 217 (346)
T d1oc2a_ 153 YNPSSPYSSTKAASDLIVKAWVRSF-GVKATISNCSNNYGPYQ-----H---IEKFIPRQITNILAGIK--PKLYG---- 217 (346)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECCEESTTC-----C---TTSHHHHHHHHHHHTCC--CEEET----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeecceeCCCC-----C---ccchhHHHHHHHHcCCc--eeEeC----
Confidence 8899999999999999999998886 99999999999999842 1 12234556777777764 45566
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCC-CcccCCCCCCCchhhcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKI-PLVKSGRRPGDAEIVYA 305 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~ 305 (347)
++++.++|+|++|++++++.+++. ...++.||+++++..++.++++.+.+.++.+. .+...+.++.....+.+
T Consensus 218 --~g~~~r~~i~v~D~a~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (346)
T d1oc2a_ 218 --EGKNVRDWIHTNDHSTGVWAILTK----GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAI 291 (346)
T ss_dssp --TSCCEEECEEHHHHHHHHHHHHHH----CCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCB
T ss_pred --CCCccccccchhhHHHHHHHHHhh----cccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeee
Confidence 789999999999999999998887 34568999999999999999999999999764 34444555555666778
Q ss_pred ChHHHHHhcCCcccc-cHHHHHHHHHHHHhhCCCCC
Q 040584 306 STEKAERELNWKAKY-GIDEMCRDQWNWASKNPYGY 340 (347)
Q Consensus 306 d~~k~~~~lg~~p~~-~~~~~i~~~~~~~~~~~~~~ 340 (347)
|++|+++.|||+|++ +|+++|+++++||++|+..|
T Consensus 292 d~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~~~ 327 (346)
T d1oc2a_ 292 DASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWW 327 (346)
T ss_dssp CCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 69999999999999986543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.4e-48 Score=354.69 Aligned_cols=304 Identities=20% Similarity=0.264 Sum_probs=245.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|||||||||||||++|+++|+++||+|+++++........ ......+..+|+.+.+.+.++++ ++|+
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~--~~d~ 82 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE----------DMFCDEFHLVDLRVMENCLKVTE--GVDH 82 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG----------GGTCSEEEECCTTSHHHHHHHHT--TCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh----------hcccCcEEEeechhHHHHHHHhh--cCCe
Confidence 68999999999999999999999999999998765432110 01355788899999999999988 6999
Q ss_pred EEEccccccCCc-cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCC-------CCCCCCCCCCch
Q 040584 82 VIHFAGLKAVGE-SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPC-------TEEFPLQAMNPY 153 (347)
Q Consensus 82 vih~a~~~~~~~-~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~-------~e~~~~~~~~~Y 153 (347)
|||+|+...... ....+...+..|+.++.+++++|++.++++||++||+.+||.....+. .|..|..|.++|
T Consensus 83 Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y 162 (363)
T d2c5aa1 83 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF 162 (363)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHH
T ss_pred EeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHH
Confidence 999998655432 245667788999999999999999999999999999999987554433 344577889999
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCce
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTV 232 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 232 (347)
+.+|.++|++++.+.+.+ ++++++|||+++|||+.. .......... ....... .......+| +|.+
T Consensus 163 g~sK~~~E~~~~~~~~~~-gl~~~ilR~~~vyG~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~g------~g~~ 229 (363)
T d2c5aa1 163 GLEKLATEELCKHYNKDF-GIECRIGRFHNIYGPFGT-----WKGGREKAPAAFCRKAQT-STDRFEMWG------DGLQ 229 (363)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCEEEEEEECCEECTTSC-----CSSSCCCHHHHHHHHHHH-CSSCEEEES------CSCC
T ss_pred HHHHHHHHHHHHHHHHHh-CCCEEEEEeeeEeccCCc-----cccccccccccccccccc-ccccccccC------CCCe
Confidence 999999999999998886 999999999999998532 2222222222 2222222 223455666 7899
Q ss_pred eeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccChHHHHH
Q 040584 233 VRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTEKAER 312 (347)
Q Consensus 233 ~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 312 (347)
.++|+|++|+++++..+++. ..+++||+++++.+|+.|+++.+.+.+|.+.++...+. +.......+|++|+++
T Consensus 230 ~rd~i~v~D~~~~~~~~~~~-----~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~-~~~~~~~~~d~ska~~ 303 (363)
T d2c5aa1 230 TRSFTFIDECVEGVLRLTKS-----DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-PEGVRGRNSDNNLIKE 303 (363)
T ss_dssp EECCEEHHHHHHHHHHHHHS-----SCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC-CCCCSBCEECCHHHHH
T ss_pred EEEEeehhHHHHHHHHHHhC-----CCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC-CCCccccccCHHHHHH
Confidence 99999999999999998876 23589999999999999999999999998887766553 3345566789999999
Q ss_pred hcCCcccccHHHHHHHHHHHHhhC
Q 040584 313 ELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 313 ~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
.|||+|+++++|+|+++++||+++
T Consensus 304 ~LGw~p~~sleegi~~ti~w~~~~ 327 (363)
T d2c5aa1 304 KLGWAPNMRLKEGLRITYFWIKEQ 327 (363)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999775
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.2e-48 Score=348.02 Aligned_cols=316 Identities=17% Similarity=0.235 Sum_probs=249.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH-HHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV-VFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~~~d 80 (347)
|||||||||||||++|+++|+++| ++|+++++......... ..++++++.+|+++.+++.+ +++ ++|
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~---------~~~~~~~i~~Di~~~~~~~~~~~~--~~d 69 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL---------NHPHFHFVEGDISIHSEWIEYHVK--KCD 69 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT---------TCTTEEEEECCTTTCSHHHHHHHH--HCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc---------cCCCeEEEECccCChHHHHHHHHh--CCC
Confidence 589999999999999999999998 58999987655432211 14689999999998766665 454 699
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCC-------CCCCCCCch
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEE-------FPLQAMNPY 153 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~-------~~~~~~~~Y 153 (347)
+|||+|+........+++...+++|+.++.+++++|.+.++ +++++||..+|+.......+|. ....|.+.|
T Consensus 70 ~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y 148 (342)
T d2blla1 70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (342)
T ss_dssp EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred ccccccccccccccccCCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCCCcchh
Confidence 99999998766556677788999999999999999999877 6788999999987665544432 234566889
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCcee
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVV 233 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 233 (347)
+.||..+|++++.+++++ +++++++|++.+|||...............+..++.+++.|+ .+.++| +|++.
T Consensus 149 ~~sK~~~E~~~~~~~~~~-~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~------~g~~~ 219 (342)
T d2blla1 149 SVSKQLLDRVIWAYGEKE-GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGS--PIKLID------GGKQK 219 (342)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTC--CEEEGG------GSCCE
T ss_pred hhcccchhhhhhhhhccc-CceeEEeeccccccccccccccccccccccchHHHHHHHhCC--CccccC------CCCee
Confidence 999999999999999886 999999999999999655443222222223445778888886 466667 78999
Q ss_pred eeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC-cccHHHHHHHHHHHhCCCCCcccCCCCCC--------------
Q 040584 234 RDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK-GTSVLEMVAAFEKASGKKIPLVKSGRRPG-------------- 298 (347)
Q Consensus 234 ~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~-~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-------------- 298 (347)
++|+|++|+++++..++++... ...+++||+++++ .+|+.|+++.+++.+|........+....
T Consensus 220 r~~i~v~D~~~a~~~~~~~~~~-~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T d2blla1 220 RCFTDIRDGIEALYRIIENAGN-RCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGY 298 (342)
T ss_dssp EECEEHHHHHHHHHHHHHCGGG-TTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC----------
T ss_pred eeecccccccceeeeehhhccc-cCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceecccccccccc
Confidence 9999999999999999987322 3557999998765 48999999999999997765443332111
Q ss_pred -CchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCCCC
Q 040584 299 -DAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 340 (347)
Q Consensus 299 -~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~~~ 340 (347)
......+|++|+++.|||+|+++++|+|+++++||+++..-+
T Consensus 299 ~~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~~ 341 (342)
T d2blla1 299 QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 341 (342)
T ss_dssp --CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCTT
T ss_pred ccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCCC
Confidence 123445799999999999999999999999999999986543
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1.4e-46 Score=345.37 Aligned_cols=338 Identities=39% Similarity=0.642 Sum_probs=264.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeCCCc---------hhHHHHHHHHHhhc----cCCCCeEEEecCCCCH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDN---------ASEIAVAKVKELAG----YQGNNMTFHKLDLRDK 67 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~ 67 (347)
.|||||||||||||++|+++|++ .||+|+++++-.. ..+.....+..... .......++.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 47999999999999999999986 6999999874211 11111122221111 1134678899999999
Q ss_pred HHHHHHHccC-CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCC-------CC
Q 040584 68 AALEVVFAGT-KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPK-------VV 139 (347)
Q Consensus 68 ~~~~~~~~~~-~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~-------~~ 139 (347)
+.+.++++.. ++|+|||+|+........+.+...++.|+.++.++++++++.++++++++||..+|+... ..
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 161 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence 9999998754 579999999987655556677788999999999999999999999999999999997543 24
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHH-HHHHHc----C-
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPF-VTQVAV----G- 213 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~----~- 213 (347)
+..|+.+..|.++|+.+|..+|.+++.+.+.+ +++++++|++++|||...............+.+. +.++.. +
T Consensus 162 ~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~ 240 (383)
T d1gy8a_ 162 PIDINAKKSPESPYGESKLIAERMIRDCAEAY-GIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240 (383)
T ss_dssp CBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred ccccccCCCCCCHHHhhHhHHHHHHHHHHHHh-CCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccccc
Confidence 56777888999999999999999999998876 9999999999999996443322221222334442 222211 1
Q ss_pred ---------CCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCC-----CCCCeeEEccCCCcccHHHHHHH
Q 040584 214 ---------RRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDP-----KVGCEVYNLGTGKGTSVLEMVAA 279 (347)
Q Consensus 214 ---------~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~-----~~~~~~~nv~~~~~~s~~e~~~~ 279 (347)
....+.++|.....++|.+.|+|+|++|++++++.+++..... ...+++||+++++++|+.|+++.
T Consensus 241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~ 320 (383)
T d1gy8a_ 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV 320 (383)
T ss_dssp ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred cchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHHHH
Confidence 1234667787777778999999999999999999998753221 23458999999999999999999
Q ss_pred HHHHhCCCCCcccCCCCCCCchhhccChHHHHHhcCCcccccHHHHHHHH-HHHHhhCCCCC
Q 040584 280 FEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQ-WNWASKNPYGY 340 (347)
Q Consensus 280 i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~-~~~~~~~~~~~ 340 (347)
+.+.+|.+.++...+.++.+.....+|++|+++.|||+|+++++|+|+++ ++|++.|+.+|
T Consensus 321 i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~~~~ 382 (383)
T d1gy8a_ 321 ARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGY 382 (383)
T ss_dssp HHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTT
T ss_pred HHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhCcccC
Confidence 99999999888777777777777888999999999999999999999887 69999998877
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-47 Score=343.76 Aligned_cols=314 Identities=22% Similarity=0.269 Sum_probs=243.2
Q ss_pred ceE-EEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH-HHHHH-HHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNI-LVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI-AVAKV-KELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~v-lItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||| ||||||||||++|+++|+++||+|++++|..+.... ..+.+ .........+++++.+|++|.+.+..++....+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 577 999999999999999999999999999986542100 00000 000001134788999999999999999987789
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC---CeEEEeccccccCCCCCCCCCCCCCCCCCCchhhh
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC---KNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRS 156 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~---~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~s 156 (347)
++|+|+|+......+...+...+++|+.++.+++++|+++++ ++||++||+.|||.....+++|++|..|.++|+.|
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~~Yg~s 160 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA 160 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCCHHHHH
Confidence 999999997665556667778889999999999999999864 48999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeee
Q 040584 157 KLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDY 236 (347)
Q Consensus 157 K~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 236 (347)
|.++|++++.+.+++ +++++++||+++|||.. ........+...+.....+.. .+..+| ++++.++|
T Consensus 161 K~~aE~~~~~~~~~~-~~~~~ilr~~~vyGp~~-----~~~~~~~~~~~~i~~~~~~~~-~~~~~g------~g~~~r~~ 227 (347)
T d1t2aa_ 161 KLYAYWIVVNFREAY-NLFAVNGILFNHESPRR-----GANFVTRKISRSVAKIYLGQL-ECFSLG------NLDAKRDW 227 (347)
T ss_dssp HHHHHHHHHHHHHHH-CCEEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHHTSC-SCEEES------CTTCEECC
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecceeCCCC-----CCCccccccceeeehhhcCCc-ceeecC------CCcceeee
Confidence 999999999998886 99999999999999832 122112223333333333332 345556 78999999
Q ss_pred eeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccC---------------------CC
Q 040584 237 IHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS---------------------GR 295 (347)
Q Consensus 237 i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~---------------------~~ 295 (347)
+|++|+++++..++++. ..+.|+++.+...++.+..+.+...++........ ..
T Consensus 228 i~v~D~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (347)
T d1t2aa_ 228 GHAKDYVEAMWLMLQND-----EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302 (347)
T ss_dssp EEHHHHHHHHHHHHHSS-----SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGS
T ss_pred eEecHHHHHHHHHhhcC-----CCccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCC
Confidence 99999999999999872 22678888889999999999999999876432111 11
Q ss_pred CCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHh
Q 040584 296 RPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWAS 334 (347)
Q Consensus 296 ~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~ 334 (347)
++.....+.+|++|++++|||+|+++++|+|+++++|..
T Consensus 303 rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~ 341 (347)
T d1t2aa_ 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADV 341 (347)
T ss_dssp CSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred CCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence 233444567899999999999999999999999986543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=8.3e-46 Score=334.55 Aligned_cols=316 Identities=20% Similarity=0.195 Sum_probs=243.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH-HHHHHHH-HhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE-IAVAKVK-ELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|++||||||||||++|+++|+++||+|++++|..+... ...+.+. .........+.++.+|+.+.+.+.+.++..++
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 489999999999999999999999999999998643210 0000000 00001134678899999999999999876679
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-----CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchh
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-----GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYG 154 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-----~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~ 154 (347)
|+|||+|+........+++...++.|+.++.++++++++. ...++++.||+.+|+.. ..+++|++|..|.+.|+
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-~~~~~E~~~~~p~~~Y~ 159 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSETTPFHPRSPYA 159 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-CSSBCTTSCCCCCSHHH
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC-CCCCCCCCCCCCcchhh
Confidence 9999999987655566788889999999999999998764 23478888888887654 45689999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceee
Q 040584 155 RSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVR 234 (347)
Q Consensus 155 ~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 234 (347)
.+|..+|.++..+.+.+ +++++++||++||||.. ........+...+.+...+....+ ..| ++.+.+
T Consensus 160 ~sK~~~E~~~~~~~~~~-~~~~~ilR~~~vyGp~~-----~~~~~~~~i~~~~~~~~~~~~~~~-~~g------~~~~~r 226 (339)
T d1n7ha_ 160 ASKCAAHWYTVNYREAY-GLFACNGILFNHESPRR-----GENFVTRKITRALGRIKVGLQTKL-FLG------NLQASR 226 (339)
T ss_dssp HHHHHHHHHHHHHHHHH-CCEEEEEEECCEECTTS-----CTTSHHHHHHHHHHHHHHTSCCCE-EES------CTTCEE
T ss_pred HHHHHHHHHHHHHHHHh-CCCEEEEEEccccCCCC-----CCCCCcchhhHHHHHHhcCCCCeE-EeC------CCCccc
Confidence 99999999999998886 89999999999999842 122212223344455555554433 445 789999
Q ss_pred eeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcc----cCCCCCCCchhhccChHHH
Q 040584 235 DYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV----KSGRRPGDAEIVYASTEKA 310 (347)
Q Consensus 235 ~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~----~~~~~~~~~~~~~~d~~k~ 310 (347)
+|+|++|+++++..++++. . ...+++..+...++.++++.+.+.+|...... ....++.......+|++|+
T Consensus 227 d~~~v~D~a~~~~~~~~~~----~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Ka 301 (339)
T d1n7ha_ 227 DWGFAGDYVEAMWLMLQQE----K-PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKA 301 (339)
T ss_dssp ECEEHHHHHHHHHHHHTSS----S-CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHH
T ss_pred cceeeehHHHHHHHHHhcC----C-CCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHH
Confidence 9999999999999999872 2 24566677888999999999999999765321 1223455556677899999
Q ss_pred HHhcCCcccccHHHHHHHHHHHHhhC
Q 040584 311 ERELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 311 ~~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
++.|||+|+++++++|+++++||.+.
T Consensus 302 k~~LGw~P~~~le~gi~~ti~~~~~~ 327 (339)
T d1n7ha_ 302 KEVLGWKPQVGFEKLVKMMVDEDLEL 327 (339)
T ss_dssp HHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999653
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-45 Score=329.11 Aligned_cols=299 Identities=20% Similarity=0.307 Sum_probs=239.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|||||||||||||++|+++|+++||.|+++++.. ..|+.|.+.+.++++...+|.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~------------------------~~~~~~~~~~~~~~~~~~~d~ 57 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD------------------------ELNLLDSRAVHDFFASERIDQ 57 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT------------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch------------------------hccccCHHHHHHHHhhcCCCE
Confidence 57999999999999999999999999998775432 158899999999987667999
Q ss_pred EEEccccccCC-ccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCC-----CCCCchhh
Q 040584 82 VIHFAGLKAVG-ESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL-----QAMNPYGR 155 (347)
Q Consensus 82 vih~a~~~~~~-~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~-----~~~~~Y~~ 155 (347)
|+|+|+..... .....+.+.+++|+.++.+++++|++.+++||||+||+++||.....+++|+.+. .+.++|+.
T Consensus 58 v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~ 137 (315)
T d1e6ua_ 58 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 137 (315)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHH
Confidence 99999865432 2334556778999999999999999999999999999999998777778776542 34467999
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH----HHHHHHcCCCCceEEecccCCCCCCc
Q 040584 156 SKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP----FVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 156 sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
+|.++|++++.+.+++ +++++++||++||||+.... .....+.. ............+.+.| ++.
T Consensus 138 sK~~~E~~~~~~~~~~-gl~~~ilR~~~vyGp~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~g~ 205 (315)
T d1e6ua_ 138 AKIAGIKLCESYNRQY-GRDYRSVMPTNLYGPHDNFH-----PSNSHVIPALLRRFHEATAQKAPDVVVWG------SGT 205 (315)
T ss_dssp HHHHHHHHHHHHHHHH-CCEEEEEEECEEESTTCCCC-----TTCSSHHHHHHHHHHHHHHHTCSEEEEES------CSC
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEeeccEECCCCCCC-----ccccccceeeeccchhhhhccCCceEEcC------CCc
Confidence 9999999999998886 99999999999999953222 11111222 11222233334566667 788
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCC-----CCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCCCCchhhccC
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDD-----PKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYAS 306 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~-----~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d 306 (347)
+.++++|++|+++++..++.+... .......+|++.+...++.++++.+.+.+|.+..+.+.+.++.......+|
T Consensus 206 ~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d 285 (315)
T d1e6ua_ 206 PMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLD 285 (315)
T ss_dssp CEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBC
T ss_pred eEEEEEEeehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccC
Confidence 999999999999999998865211 123457899999999999999999999999998777766666666667789
Q ss_pred hHHHHHhcCCcccccHHHHHHHHHHHHhhCC
Q 040584 307 TEKAERELNWKAKYGIDEMCRDQWNWASKNP 337 (347)
Q Consensus 307 ~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 337 (347)
++|++ .|||+|+++++|+|+++++||++|+
T Consensus 286 ~sk~k-~Lg~~p~~~l~e~i~~ti~w~~~N~ 315 (315)
T d1e6ua_ 286 VTRLH-QLGWYHEISLEAGLASTYQWFLENQ 315 (315)
T ss_dssp CHHHH-HTTCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHH-HcCCCCCCCHHHHHHHHHHHHHHcC
Confidence 99996 5999999999999999999999874
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.7e-44 Score=325.35 Aligned_cols=314 Identities=23% Similarity=0.345 Sum_probs=245.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVI 83 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (347)
||||||||||||++|+++|+++||+|+++++-...... +.+..+. ..++++++.+|++|.+.+.+++++.++|+||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~--~~~~~~~--~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi 77 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGAT--DNLHWLS--SLGNFEFVHGDIRNKNDVTRLITKYMPDSCF 77 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHH--HHHHHHH--TTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccch--hHHHHhh--ccCCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence 79999999999999999999999999999754433221 1122221 1458899999999999999999876789999
Q ss_pred EccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecccccc-CCCCCCC----------------CCCCCC
Q 040584 84 HFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAY-GWPKVVP----------------CTEEFP 146 (347)
Q Consensus 84 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~y-g~~~~~~----------------~~e~~~ 146 (347)
|+|+.........++...+++|+.||.+|+++|.+.+++++|++||..++ +.....+ ..+..+
T Consensus 78 h~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T d1orra_ 78 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQ 157 (338)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSC
T ss_pred eecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCc
Confidence 99998765555667889999999999999999999998776666665554 3332211 223445
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHH---HHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQ---VAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~ 223 (347)
..|.+.|+.+|...|.++..+.+.+ +...+.+|++++||+...+. .. ...+..++.+ ...+....+.++|
T Consensus 158 ~~~~~~y~~~k~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~g- 230 (338)
T d1orra_ 158 LDFHSPYGCSKGAADQYMLDYARIF-GLNTVVFRHSSMYGGRQFAT--YD---QGWVGWFCQKAVEIKNGINKPFTISG- 230 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECCEECTTCCCB--TT---BCHHHHHHHHHHHHHTTCCCCEEEES-
T ss_pred cccccccccccchhhhhhhhhhhcc-Ccccccccccceeecccccc--cc---ccccchhhHHHHHHHhccCCceEEeC-
Confidence 6678899999999999999888876 88999999999998743211 11 1112223333 3445555778888
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC--CCcccHHHHHHHHHHHhCCCCCcccCCCCCCCch
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGT--GKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAE 301 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~--~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~ 301 (347)
+|.+.++|+|++|++++++.+++... ...+++||+.. +..+++.|+++.+.+.+|.+.++...+.++.+..
T Consensus 231 -----~g~~~r~~~~v~D~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 303 (338)
T d1orra_ 231 -----NGKQVRDVLHAEDMISLYFTALANVS--KIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQR 303 (338)
T ss_dssp -----SSCCEEECEEHHHHHHHHHHHHHTHH--HHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCS
T ss_pred -----CCceeEeeecccchhhHHHHHHhccc--cccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcC
Confidence 78999999999999999999987621 24568899844 4578999999999999999888777777777777
Q ss_pred hhccChHHHHHhcCCcccccHHHHHHHHHHHHhh
Q 040584 302 IVYASTEKAERELNWKAKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 302 ~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~ 335 (347)
...+|++|+++.|||+|+++++|+|+++++||+.
T Consensus 304 ~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 304 VFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp EECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred eeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 7788999999999999999999999999999974
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=9.6e-44 Score=327.47 Aligned_cols=321 Identities=24% Similarity=0.265 Sum_probs=236.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc----------------hhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN----------------ASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+|||||||||||||++|+++|+++||+|++++.... ........+... ...+++++.+|++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~Dl~ 77 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL---TGKSIELYVGDIC 77 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH---HCCCCEEEESCTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh---cCCCcEEEEccCC
Confidence 589999999999999999999999999999862111 111111222222 2467899999999
Q ss_pred CHHHHHHHHccCCCcEEEEccccccCCcccc---CcchhhhhhhhHHHHHHHHHHHcCCC-eEEEeccccccCCCCCCC-
Q 040584 66 DKAALEVVFAGTKFDAVIHFAGLKAVGESVQ---KPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSSATAYGWPKVVP- 140 (347)
Q Consensus 66 d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~---~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~~yg~~~~~~- 140 (347)
|.+.+.++++..++|+|||+||......+.. .+..++++|+.|+.+++++|++.+++ ++++.||..+|+......
T Consensus 78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~ 157 (393)
T d1i24a_ 78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE 157 (393)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccc
Confidence 9999999998777899999999765443332 24467899999999999999998765 688888888887543211
Q ss_pred -----C-------CCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCC--------CCCCC
Q 040584 141 -----C-------TEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGED--------PRGIP 200 (347)
Q Consensus 141 -----~-------~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~--------~~~~~ 200 (347)
. ++..+..|.++|+.+|..+|.+++.++++. +++++++||+++|||........ .....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~-~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~ 236 (393)
T d1i24a_ 158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF 236 (393)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH-CCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTT
T ss_pred cccccccccccccccccccccccHHHHHhhhhccccccccccc-ceeeeecccccccCCCcccccccccccccccccccc
Confidence 0 112356788999999999999999998876 99999999999999964332111 11111
Q ss_pred Cc-cHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc-cCCCcccHHHHHH
Q 040584 201 NN-LMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNL-GTGKGTSVLEMVA 278 (347)
Q Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv-~~~~~~s~~e~~~ 278 (347)
.. +..++.+...++ ++.++| ++.+.|+|+|++|+++++..++++. ...+..+.+ ++++.+|+.|+++
T Consensus 237 ~~~i~~~~~~~~~~~--~~~i~g------~~~~~rd~v~v~D~~~a~~~~~~~~---~~~g~~~~~~~~~~~~si~el~~ 305 (393)
T d1i24a_ 237 GTALNRFCVQAAVGH--PLTVYG------KGGQTRGYLDIRDTVQCVEIAIANP---AKAGEFRVFNQFTEQFSVNELAS 305 (393)
T ss_dssp CCHHHHHHHHHHHTC--CEEEET------TSCCEEEEEEHHHHHHHHHHHHHSC---CCTTCEEEEEECSEEEEHHHHHH
T ss_pred ccchhhhhHHhhcCC--eeEEee------ecccccccccccchHHHHHHHHHhh---cccceeeeecCCCCeeEHHHHHH
Confidence 22 344677777775 577778 8899999999999999999999872 233332222 3556799999999
Q ss_pred HHHHHhC---CCCCccc--CCCCCCCchhhccChHHHHHhcCCcccccHHHHHHHHHHHHhhCCC
Q 040584 279 AFEKASG---KKIPLVK--SGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPY 338 (347)
Q Consensus 279 ~i~~~~g---~~~~~~~--~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~~~~~~ 338 (347)
.+.+..+ ....... .+..+........|++|+++ |||+|+++++++++++++|+++++.
T Consensus 306 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~~~~k~ 369 (393)
T d1i24a_ 306 LVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFAVQFKD 369 (393)
T ss_dssp HHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhhCCCcceeeccCCCCCCCccEecCCHHHHHH-cCCccccCHHHHHHHHHHHHHHHHH
Confidence 9888753 3333322 23344445566789999975 8999999999999999999988754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=4.9e-41 Score=305.12 Aligned_cols=313 Identities=19% Similarity=0.246 Sum_probs=238.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|||||||||||||++|++.|+++||+|++++|...+.....+... ..+.++++.+|++|++.+.++++...+|+
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR-----VADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT-----TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh-----cccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 5899999999999999999999999999999998775543332211 13579999999999999999988767999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC-CeEEEeccccccCC-CCCCCCCCCCCCCCCCchhhhHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC-KNLVFSSSATAYGW-PKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~~iv~~SS~~~yg~-~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|+|+......+...+...+++|+.++.++++++++.+. ..+++.||..+|.. ....+.+|+.+..|.++|+.+|..
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~ 162 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGC 162 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHH
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCcccccccc
Confidence 9999998765556678888999999999999999998764 45666666555544 334566778888899999999999
Q ss_pred HHHHHHHHhhhc--------CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCc
Q 040584 160 IEEICRDVHRSD--------SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 160 ~e~~~~~~~~~~--------~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
.|..+..++.+. .++.++++||+++|||+.. ....+++.+.+...+..+ .+++ .+.
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~--------~~~~~i~~~~~~~~~~~~--~~~~------~~~ 226 (356)
T d1rkxa_ 163 AELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDW--------ALDRIVPDILRAFEQSQP--VIIR------NPH 226 (356)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCC--------CSSCHHHHHHHHHHTTCC--EECS------CTT
T ss_pred chhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcc--------hhhHHHHHHHHHHhCCCc--eEEe------ecc
Confidence 999998776542 2678999999999998421 122355544444444432 2344 678
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCCC-CCCee--EEccCCCcccHHHHHHHHHHHhCCCCCcccC-CCCCCCchhhccCh
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDPK-VGCEV--YNLGTGKGTSVLEMVAAFEKASGKKIPLVKS-GRRPGDAEIVYAST 307 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~~-~~~~~--~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~-~~~~~~~~~~~~d~ 307 (347)
+.++++|++|+++++..++....... ..+.. +++..+..+++.++++.+.+.++....+... ..++.+.....+|+
T Consensus 227 ~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 306 (356)
T d1rkxa_ 227 AIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDC 306 (356)
T ss_dssp CEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCC
T ss_pred ccccccccccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcH
Confidence 99999999999999998887632211 12233 3334456789999999999999987765443 23345556677899
Q ss_pred HHHHHhcCCcccccHHHHHHHHHHHHhh
Q 040584 308 EKAERELNWKAKYGIDEMCRDQWNWASK 335 (347)
Q Consensus 308 ~k~~~~lg~~p~~~~~~~i~~~~~~~~~ 335 (347)
+|++++|||+|+++++++|+++++||+.
T Consensus 307 skak~~LGw~P~~~l~egi~~ti~wyk~ 334 (356)
T d1rkxa_ 307 SKAKMQLGWHPRWNLNTTLEYIVGWHKN 334 (356)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=4.5e-40 Score=288.83 Aligned_cols=275 Identities=17% Similarity=0.147 Sum_probs=228.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.|||||||||||||++|+++|.++||+|++++|+. +|+.|.+++.++++..++|+
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-------------------------~D~~d~~~~~~~l~~~~~d~ 55 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-------------------------LDITNVLAVNKFFNEKKPNV 55 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-------------------------CCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-------------------------ccCCCHHHHHHHHHHcCCCE
Confidence 47899999999999999999999999999998741 48999999999998767999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||+|+......+...+...+..|+.....+.+.++.... ++++.||..+|+.....+.+|.++..+...|+.+|...|
T Consensus 56 vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 56 VINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGE 134 (281)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHH
T ss_pred EEeeccccccccccccchhhcccccccccccccccccccc-cccccccceeeeccccccccccccccchhhhhhhhhHHH
Confidence 9999998765556667778888999999999888887754 889999999999888889999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
+.++.+ +.+++++||+++|||+. +....++.....+. ...++ +++.++++|++|
T Consensus 135 ~~~~~~-----~~~~~i~R~~~vyG~~~-----------~~~~~~~~~~~~~~--~~~~~--------~~~~~~~i~v~D 188 (281)
T d1vl0a_ 135 NFVKAL-----NPKYYIVRTAWLYGDGN-----------NFVKTMINLGKTHD--ELKVV--------HDQVGTPTSTVD 188 (281)
T ss_dssp HHHHHH-----CSSEEEEEECSEESSSS-----------CHHHHHHHHHHHCS--EEEEE--------SSCEECCEEHHH
T ss_pred HHHHHh-----CCCccccceeEEeCCCc-----------ccccchhhhhccCC--ceeec--------CCceeccchhhh
Confidence 988764 67899999999999841 12333555555544 33333 468899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCCCC-----CCchhhccChHHHHHhcCC
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRP-----GDAEIVYASTEKAERELNW 316 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-----~~~~~~~~d~~k~~~~lg~ 316 (347)
+++++..++++. ..++||+++++.+|+.|+++.+++.+|.+..+..++... .++....+|++|+++.|||
T Consensus 189 ~~~~~~~~~~~~-----~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~ 263 (281)
T d1vl0a_ 189 LARVVLKVIDEK-----NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGD 263 (281)
T ss_dssp HHHHHHHHHHHT-----CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCC
T ss_pred hhhhhhhhhhhc-----ccCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCC
Confidence 999999999882 237999999999999999999999999887665433211 1123345799999999999
Q ss_pred cccccHHHHHHHHHHHHh
Q 040584 317 KAKYGIDEMCRDQWNWAS 334 (347)
Q Consensus 317 ~p~~~~~~~i~~~~~~~~ 334 (347)
+|+ +|+++|++++++++
T Consensus 264 ~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 264 ITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp CCC-BHHHHHHHHHHHHT
T ss_pred CCC-CHHHHHHHHHHHhc
Confidence 999 99999999999985
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=7.5e-40 Score=295.77 Aligned_cols=306 Identities=20% Similarity=0.163 Sum_probs=219.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++||||||+||||++|++.|+++||+|+++.|+..+........... . .......+.+|+.|.+.+.+++. ++|+
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~~~~~~~~--~~~~ 86 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK-Y-PGRFETAVVEDMLKQGAYDEVIK--GAAG 86 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-S-TTTEEEEECSCTTSTTTTTTTTT--TCSE
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhcc-c-cccccEEEeccccchhhhhhhcc--cchh
Confidence 479999999999999999999999999999998765443322221111 1 12233457799999999999888 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCCeEEEeccccccCCCCC----CC----------------
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCKNLVFSSSATAYGWPKV----VP---------------- 140 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~~yg~~~~----~~---------------- 140 (347)
|+|+|+.... ...+...++.|+.++.+++++|.+. ++++||++||+.+++.... ..
T Consensus 87 v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 163 (342)
T d1y1pa1 87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred hhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccc
Confidence 9999997542 3445677889999999999999986 5899999999876533221 11
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceE
Q 040584 141 CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALT 219 (347)
Q Consensus 141 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (347)
..|..+..|.++|+.+|..+|.+++.|.+++ .++.++++||+.+|||... +......+..++..+..+......
T Consensus 164 ~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~-----~~~~~~~~~~~~~~l~~g~~~~~~ 238 (342)
T d1y1pa1 164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFD-----PETQSGSTSGWMMSLFNGEVSPAL 238 (342)
T ss_dssp SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSC-----TTTCCCHHHHHHHHHHTTCCCHHH
T ss_pred ccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCC-----ccccccchHHHHHHHHcCCcCccc
Confidence 2344556677889999999999999988764 4688899999999998422 222223455577777777643322
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC-CCCcccCCCCCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK-KIPLVKSGRRPG 298 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~ 298 (347)
.+.+.++|+|++|+|++++.++++ +... +.|++++++..|++|+++.+.+.++. ..+... +....
T Consensus 239 ---------~~~~~~~~v~v~Dva~~~i~~l~~---~~~~-g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~-~~~~~ 304 (342)
T d1y1pa1 239 ---------ALMPPQYYVSAVDIGLLHLGCLVL---PQIE-RRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF-PDQGQ 304 (342)
T ss_dssp ---------HTCCSEEEEEHHHHHHHHHHHHHC---TTCC-SCEEEECCEEECHHHHHHHHHHHCTTSCCCCCC-CCCCC
T ss_pred ---------CCccceeeeeHHHHHHHHHHhhcC---cccc-ceEEEEcCCceEHHHHHHHHHHHcCCCcCCccC-CccCc
Confidence 355668999999999999999987 2333 45667788899999999999998853 222221 11111
Q ss_pred Cchh-hccChHHHHHhcCCcccccHHHHHHHHHHHH
Q 040584 299 DAEI-VYASTEKAERELNWKAKYGIDEMCRDQWNWA 333 (347)
Q Consensus 299 ~~~~-~~~d~~k~~~~lg~~p~~~~~~~i~~~~~~~ 333 (347)
.... ....+.+..+.|||.|.++++++|+++++..
T Consensus 305 ~~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 305 DLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp CCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred ccccccchHHHHHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 1111 1112344446699999999999999999754
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-37 Score=275.15 Aligned_cols=295 Identities=24% Similarity=0.302 Sum_probs=202.1
Q ss_pred EEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH-HHHcc---CCC
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE-VVFAG---TKF 79 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~-~~~~~---~~~ 79 (347)
|||||||||||++|++.|+++|+ +|+++++-...... ..+.. ....|..+...+. ..... ..+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNLVD----------LNIADYMDKEDFLIQIMAGEEFGDV 69 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HHHHT----------SCCSEEEEHHHHHHHHHTTCCCSSC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh--hcccc----------cchhhhccchHHHHHHhhhhcccch
Confidence 89999999999999999999995 78888754443211 11111 0112222223222 22211 258
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
++|+|+|+.... .........+.|+.++.+++++++..++ ++|+.||..+|+........++.+..+.+.|+.+|..
T Consensus 70 ~~i~~~aa~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i-~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~~ 146 (307)
T d1eq2a_ 70 EAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFL 146 (307)
T ss_dssp CEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHH
T ss_pred hhhhhhcccccc--cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccch
Confidence 999999986543 2334556778889999999999999888 5777888888877666667777778889999999999
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
+|.+++.+..+. +++++++||+++|||.. ........+.. ++.++..++... ...| ++...++|+|
T Consensus 147 ~e~~~~~~~~~~-~~~~~~~r~~~vyGp~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~~~~~r~~~~ 213 (307)
T d1eq2a_ 147 FDEYVRQILPEA-NSQIVGFRYFNVYGPRE-----GHKGSMASVAFHLNTQLNNGESPK-LFEG------SENFKRDFVY 213 (307)
T ss_dssp HHHHHHHHGGGC-SSCEEEEEECEEESSSC-----GGGGGGSCHHHHHHHHHHC--------------------CBCEEE
T ss_pred hhhhcccccccc-ccccccccceeEeeccc-----ccccccccccccccccccccccee-eecC------ccceeeeeee
Confidence 999999998886 99999999999999842 22222233444 455666655432 3334 6788899999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccCCC----CCCCchhhccChHHHHHhc
Q 040584 239 VVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGR----RPGDAEIVYASTEKAEREL 314 (347)
Q Consensus 239 v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~d~~k~~~~l 314 (347)
++|+++++..++.+ ...+.||+++++..|++|+++.+.+..+.. .+...+. ..........|++|+++.+
T Consensus 214 v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~si~~i~~~i~~~~~~~-~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~ 287 (307)
T d1eq2a_ 214 VGDVADVNLWFLEN-----GVSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRAAG 287 (307)
T ss_dssp HHHHHHHHHHHHHH-----CCCEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTT
T ss_pred cccHHHHHHHHhhh-----ccccccccccccchhHHHHHHHHHHhcCCC-CeeEeeCCccCCCCCceeeecCHHHHHHHH
Confidence 99999999999987 234799999999999999999998876532 2222111 1122333456999999999
Q ss_pred CCcccccHHHHHHHHHHHH
Q 040584 315 NWKAKYGIDEMCRDQWNWA 333 (347)
Q Consensus 315 g~~p~~~~~~~i~~~~~~~ 333 (347)
||+|.++++|+|+++++|+
T Consensus 288 ~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 288 YDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp CCCCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHhC
Confidence 9999999999999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.3e-37 Score=271.71 Aligned_cols=285 Identities=19% Similarity=0.136 Sum_probs=215.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|||||||||||||++|++.|+++|+.|.+. +.... +.+|+.|.+.+.++++..++|+|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~-~~~~~---------------------~~~Dl~~~~~~~~~i~~~~~D~V 58 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIALD-VHSKE---------------------FCGDFSNPKGVAETVRKLRPDVI 58 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEEC-TTCSS---------------------SCCCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEE-CCCcc---------------------ccCcCCCHHHHHHHHHHcCCCEE
Confidence 679999999999999999999998765543 33221 34799999999999987678999
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEE 162 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~ 162 (347)
||+||......+...+...++.|+.++.+++++|++.++ +++++||+.+|+.....+.+|+.+..|.+.|+.+|..+|.
T Consensus 59 ih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y~~~k~~~e~ 137 (298)
T d1n2sa_ 59 VNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEK 137 (298)
T ss_dssp EECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHH
T ss_pred EEecccccccccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCccccccCCCchHhhhhhhhhh
Confidence 999998766667778888999999999999999998875 8999999999998888899999999999999999999999
Q ss_pred HHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHH
Q 040584 163 ICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDL 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~ 242 (347)
.++.+.. ...++|++..|++. + ......+.+.+.... .+.. .+.+.++++|++|+
T Consensus 138 ~~~~~~~-----~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~d~ 192 (298)
T d1n2sa_ 138 ALQDNCP-----KHLIFRTSWVYAGK----G-------NNFAKTMLRLAKERQ-TLSV--------INDQYGAPTGAELL 192 (298)
T ss_dssp HHHHHCS-----SEEEEEECSEECSS----S-------CCHHHHHHHHHHHCS-EEEE--------ECSCEECCEEHHHH
T ss_pred hHHhhhc-----ccccccccceeecc----C-------Cccchhhhhhhcccc-eeec--------ccceeecccccchH
Confidence 9887533 34556665555431 1 112333333333332 2333 34678899999999
Q ss_pred HHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCC---CCCcc---cCCC-----CCCCchhhccChHHHH
Q 040584 243 ADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGK---KIPLV---KSGR-----RPGDAEIVYASTEKAE 311 (347)
Q Consensus 243 a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~---~~~~~---~~~~-----~~~~~~~~~~d~~k~~ 311 (347)
++++..++.........+++||+++++.++..|+++.+.+..+. ..... ..+. ....+....+|++|++
T Consensus 193 ~~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~ 272 (298)
T d1n2sa_ 193 ADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQ 272 (298)
T ss_dssp HHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHH
T ss_pred HHHHHHHHhhhhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHH
Confidence 99998887643223356699999999999999999998776543 22111 1110 0111233467999999
Q ss_pred HhcCCcccccHHHHHHHHHHHHhhC
Q 040584 312 RELNWKAKYGIDEMCRDQWNWASKN 336 (347)
Q Consensus 312 ~~lg~~p~~~~~~~i~~~~~~~~~~ 336 (347)
+.|||+|+ +|+++|+++++++..+
T Consensus 273 ~~~~~~~~-~~~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 273 RNFDLILP-QWELGVKRMLTEMFTT 296 (298)
T ss_dssp HHHTCCCC-BHHHHHHHHHHHHHSC
T ss_pred HHHCCCCC-cHHHHHHHHHHHHHhh
Confidence 99999999 9999999999988765
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=1.1e-28 Score=218.65 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=177.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH-HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI-AVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
++||||||||||||++|+++|+++||+|+++.|+...... ..+.+..+ ...+++++.+|+.|.+.+.+++. +++
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~---~~~~v~~v~~d~~d~~~~~~~~~--~~~ 77 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF---KQLGAKLIEASLDDHQRLVDALK--QVD 77 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH---HTTTCEEECCCSSCHHHHHHHHT--TCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhh---ccCCcEEEEeecccchhhhhhcc--Ccc
Confidence 5789999999999999999999999999999987654322 12222222 24578999999999999999998 689
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
+++|+++... ...|..++.+++++|++.+..++++.||.++++.. +..+..+...|..+|..+
T Consensus 78 ~~~~~~~~~~-----------~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~------~~~~~~~~~~~~~~~~~~ 140 (312)
T d1qyda_ 78 VVISALAGGV-----------LSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDI------MEHALQPGSITFIDKRKV 140 (312)
T ss_dssp EEEECCCCSS-----------SSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTS------CCCCCSSTTHHHHHHHHH
T ss_pred hhhhhhhhcc-----------cccchhhhhHHHHHHHHhcCCcEEEEeeccccCCC------cccccchhhhhhHHHHHH
Confidence 9999987532 23467777889999999887788889987665322 223445556677777666
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHH
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVV 240 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~ 240 (347)
+.... . .+++++++|++.+||+........ .... ......+.++| ++++.++|||++
T Consensus 141 ~~~~~----~-~~~~~~i~r~~~~~g~~~~~~~~~-----------~~~~-~~~~~~~~~~~------~g~~~~~~i~v~ 197 (312)
T d1qyda_ 141 RRAIE----A-ASIPYTYVSSNMFAGYFAGSLAQL-----------DGHM-MPPRDKVLIYG------DGNVKGIWVDED 197 (312)
T ss_dssp HHHHH----H-TTCCBCEEECCEEHHHHTTTSSCT-----------TCCS-SCCSSEECCBT------TSCSEEEEECHH
T ss_pred HHhhc----c-cccceEEeccceeecCCccchhhH-----------HHHh-hhccccccccc------ccccccceeeHH
Confidence 66543 3 388999999999999742211110 0000 11112344555 789999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCe-eEEccCCCcccHHHHHHHHHHHhCCCCCcccC
Q 040584 241 DLADGHIAALRKLDDPKVGCE-VYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 293 (347)
Q Consensus 241 D~a~a~~~~~~~~~~~~~~~~-~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~ 293 (347)
|+|++++.++.+ +...++ .|++++++.+|++|+++.+++++|.+.++...
T Consensus 198 Dva~a~~~~l~~---~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i 248 (312)
T d1qyda_ 198 DVGTYTIKSIDD---PQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYI 248 (312)
T ss_dssp HHHHHHHHHTTC---GGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCB
T ss_pred HHHHHHHHHhcC---ccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEEC
Confidence 999999999977 334445 46676677899999999999999988765443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.2e-28 Score=203.98 Aligned_cols=200 Identities=21% Similarity=0.167 Sum_probs=154.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||||+||||||+||++++++|+++||+|+++.|++.+.+.. ...+++++.+|+.|.+++.++++ ++|+
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~----------~~~~~~~~~gD~~d~~~l~~al~--~~d~ 70 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE----------GPRPAHVVVGDVLQAADVDKTVA--GQDA 70 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS----------SCCCSEEEESCTTSHHHHHHHHT--TCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc----------cccccccccccccchhhHHHHhc--CCCE
Confidence 47899999999999999999999999999999987664321 24578999999999999999999 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIE 161 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e 161 (347)
|||++|.... ....+++..++.++++++++.+++|||++||..+|+..... ......|...|..+|
T Consensus 71 vi~~~g~~~~-------~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~-------~~~~~~~~~~~~~~e 136 (205)
T d1hdoa_ 71 VIVLLGTRND-------LSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-------PPRLQAVTDDHIRMH 136 (205)
T ss_dssp EEECCCCTTC-------CSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-------CGGGHHHHHHHHHHH
T ss_pred EEEEeccCCc-------hhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccc-------cccccccchHHHHHH
Confidence 9999986432 12235678899999999999999999999999987543221 122346888899999
Q ss_pred HHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHH
Q 040584 162 EICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVD 241 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D 241 (347)
++++. .+++++++||+.+++... .+. ..+.. ++.....+|+++|
T Consensus 137 ~~l~~-----~~~~~tiirp~~~~~~~~----------------------~~~---~~~~~------~~~~~~~~i~~~D 180 (205)
T d1hdoa_ 137 KVLRE-----SGLKYVAVMPPHIGDQPL----------------------TGA---YTVTL------DGRGPSRVISKHD 180 (205)
T ss_dssp HHHHH-----TCSEEEEECCSEEECCCC----------------------CSC---CEEES------SSCSSCSEEEHHH
T ss_pred HHHHh-----cCCceEEEecceecCCCC----------------------ccc---EEEee------CCCCCCCcCCHHH
Confidence 88764 389999999999986321 111 11111 3556667999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 242 LADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 242 ~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
+|++++.++++ +...++.+.++
T Consensus 181 vA~~~~~~l~~---~~~~g~~~~~s 202 (205)
T d1hdoa_ 181 LGHFMLRCLTT---DEYDGHSTYPS 202 (205)
T ss_dssp HHHHHHHTTSC---STTTTCEEEEE
T ss_pred HHHHHHHHhCC---CCCCCEEEecC
Confidence 99999999987 44556776664
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.96 E-value=4.9e-29 Score=219.84 Aligned_cols=238 Identities=17% Similarity=0.173 Sum_probs=171.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH--HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA--VAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|||||||||||||++|+++|+++||+|++++|++...... ...+..+ ...+++++.+|+.+...+.+.++ ++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~--~~ 77 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF---KASGANIVHGSIDDHASLVEAVK--NV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH---HTTTCEEECCCTTCHHHHHHHHH--TC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhh---ccCCcEEEEeecccchhhhhhhh--hc
Confidence 68999999999999999999999999999999987654221 2222222 23578899999999999999998 68
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
+.|+|+++.. +..++.+++++++..+++++++.||..... ++.....+...+...+..
T Consensus 78 ~~vi~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~-------~~~~~~~~~~~~~~~~~~ 135 (307)
T d1qyca_ 78 DVVISTVGSL---------------QIESQVNIIKAIKEVGTVKRFFPSEFGNDV-------DNVHAVEPAKSVFEVKAK 135 (307)
T ss_dssp SEEEECCCGG---------------GSGGGHHHHHHHHHHCCCSEEECSCCSSCT-------TSCCCCTTHHHHHHHHHH
T ss_pred eeeeeccccc---------------ccchhhHHHHHHHHhccccceeeecccccc-------cccccccccccccccccc
Confidence 9999998643 444566788999988888898888865432 122222333445555556
Q ss_pred HHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH
Q 040584 160 IEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV 239 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v 239 (347)
.+..+.. . +++++++|++++||+..... ..++.....+ ....+++ .+++.++|+|+
T Consensus 136 ~~~~~~~----~-~~~~~i~r~~~v~g~~~~~~-----------~~~~~~~~~~--~~~~~~~------~~~~~~~~i~v 191 (307)
T d1qyca_ 136 VRRAIEA----E-GIPYTYVSSNCFAGYFLRSL-----------AQAGLTAPPR--DKVVILG------DGNARVVFVKE 191 (307)
T ss_dssp HHHHHHH----H-TCCBEEEECCEEHHHHTTTT-----------TCTTCSSCCS--SEEEEET------TSCCEEEEECH
T ss_pred ccchhhc----c-CCCceecccceecCCCccch-----------hhhhhhhhhc--ccceeee------cccccccCCcH
Confidence 6655543 2 88999999999999742211 1111111222 2445555 78999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCccc
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVK 292 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~ 292 (347)
+|+|+++..++.+.. ..+...||+++++.+|+.|+++.+.+++|.+..+..
T Consensus 192 ~Dva~~~~~~l~~~~--~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~ 242 (307)
T d1qyca_ 192 EDIGTFTIKAVDDPR--TLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAY 242 (307)
T ss_dssp HHHHHHHHTTSSCGG--GTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHHHHHhcChh--hcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEE
Confidence 999999999887621 123345677788899999999999999998866443
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.4e-28 Score=205.04 Aligned_cols=205 Identities=14% Similarity=0.130 Sum_probs=152.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|+|+|||||||||++|+++|+++|+ +|+++.|++...... ....+....+|+.+.+.+.++++ ++
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~----------~~~~i~~~~~D~~~~~~~~~~~~--~~ 81 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE----------AYKNVNQEVVDFEKLDDYASAFQ--GH 81 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG----------GGGGCEEEECCGGGGGGGGGGGS--SC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc----------ccceeeeeeeccccccccccccc--cc
Confidence 47899999999999999999999994 899999876543210 12367788899999999998888 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||++|... .......+.++|+.++.+++++|++.++++||++||..+++ .+.+.|+.+|..
T Consensus 82 d~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~-------------~~~~~Y~~~K~~ 145 (232)
T d2bkaa1 82 DVGFCCLGTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK-------------SSNFLYLQVKGE 145 (232)
T ss_dssp SEEEECCCCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-------------TCSSHHHHHHHH
T ss_pred ccccccccccc---cccchhhhhhhcccccceeeecccccCccccccCCcccccc-------------CccchhHHHHHH
Confidence 99999998643 22234567888999999999999999999999999998753 234679999999
Q ss_pred HHHHHHHHhhhcCCc-eEEEeecccccCCCCCCCCCCCCCCCCccHHH-HHHHHcCCCCceEEecccCCCCCCceeeeee
Q 040584 160 IEEICRDVHRSDSEW-KIILLRYFNPVGAHPSGKGEDPRGIPNNLMPF-VTQVAVGRRPALTVFGTDYSTKDGTVVRDYI 237 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~-~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i 237 (347)
+|+.++.+ ++ .++++||+.+||+... ..+... ......... ........|
T Consensus 146 ~E~~l~~~-----~~~~~~IlRP~~i~G~~~~----------~~~~~~~~~~~~~~~~-------------~~~~~~~~I 197 (232)
T d2bkaa1 146 VEAKVEEL-----KFDRYSVFRPGVLLCDRQE----------SRPGEWLVRKFFGSLP-------------DSWASGHSV 197 (232)
T ss_dssp HHHHHHTT-----CCSEEEEEECCEEECTTGG----------GSHHHHHHHHHHCSCC-------------TTGGGGTEE
T ss_pred hhhccccc-----cccceEEecCceeecCCCc----------CcHHHHHHHHHhhccC-------------CcccCCCeE
Confidence 99988753 44 5899999999997311 112222 333332211 233344579
Q ss_pred eHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 238 HVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 238 ~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
+++|+|++++.++... ..++.+.+.
T Consensus 198 ~~~dvA~a~i~~~~~~----~~~~~~i~~ 222 (232)
T d2bkaa1 198 PVVTVVRAMLNNVVRP----RDKQMELLE 222 (232)
T ss_dssp EHHHHHHHHHHHHTSC----CCSSEEEEE
T ss_pred EHHHHHHHHHHHHhcC----ccCCeEEEc
Confidence 9999999999888762 233555553
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=7.1e-27 Score=199.48 Aligned_cols=230 Identities=16% Similarity=0.131 Sum_probs=157.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCe--EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYK--TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|++|||||||||||++++++|+++|++ |+.+.|++++.. .+ ..+++++.+|+.+.+.+.++++ ++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~-------~~----~~~~~~~~~d~~~~~~~~~~~~--~~ 69 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE-------KI----GGEADVFIGDITDADSINPAFQ--GI 69 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH-------HT----TCCTTEEECCTTSHHHHHHHHT--TC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH-------hc----cCCcEEEEeeeccccccccccc--cc
Confidence 589999999999999999999999976 455666543322 11 3478899999999999999998 69
Q ss_pred cEEEEccccccCCc-------------cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 80 DAVIHFAGLKAVGE-------------SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 80 d~vih~a~~~~~~~-------------~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
|+|||+|+...... ..........+|+.++.+++..+.....+++.+.|+...+..... ..
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~------~~ 143 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP------LN 143 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG------GG
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc------cc
Confidence 99999998643211 122345567789999999999999888889999988776532110 01
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
......|...+...+. +..+ .+++++++||+++|||..... . + ..+....
T Consensus 144 ~~~~~~~~~~~~~~~~----~~~~-~~~~~~ilRp~~v~g~~~~~~--------~-~-------~~~~~~~--------- 193 (252)
T d2q46a1 144 KLGNGNILVWKRKAEQ----YLAD-SGTPYTIIRAGGLLDKEGGVR--------E-L-------LVGKDDE--------- 193 (252)
T ss_dssp GGGGCCHHHHHHHHHH----HHHH-SSSCEEEEEECEEECSCTTSS--------C-E-------EEESTTG---------
T ss_pred cccccchhhhhhhhhh----hhhc-ccccceeecceEEECCCcchh--------h-h-------hhccCcc---------
Confidence 1122334444433333 3333 489999999999999842111 0 0 0111001
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC---cccHHHHHHHHHHHhC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK---GTSVLEMVAAFEKASG 285 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~---~~s~~e~~~~i~~~~g 285 (347)
......++||++|+|++++.++++ +...+++||++++. ..++.|+.+.+.++.+
T Consensus 194 --~~~~~~~~i~~~Dva~a~~~~l~~---~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 194 --LLQTDTKTVPRADVAEVCIQALLF---EEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp --GGGSSCCEEEHHHHHHHHHHHTTC---GGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred --cccCCCCeEEHHHHHHHHHHHhCC---ccccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 123345799999999999999987 44677999998643 4567777777765543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=4e-25 Score=185.04 Aligned_cols=188 Identities=15% Similarity=0.142 Sum_probs=133.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.|||||||||||||++|+++|+++|+ +|+++.|++... .+++ ..+..|..++...+.. .+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~--------------~~~~---~~~~~d~~~~~~~~~~-~~ 63 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE--------------HPRL---DNPVGPLAELLPQLDG-SI 63 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC--------------CTTE---ECCBSCHHHHGGGCCS-CC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh--------------cccc---cccccchhhhhhcccc-ch
Confidence 58999999999999999999999998 566666654321 1233 3445555555544443 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHH
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLF 159 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~ 159 (347)
|+|||++|.... .......+.+.|+.++.+++++|++.++++++++||..+++ .+.+.|+.+|..
T Consensus 64 d~vi~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~-------------~~~~~y~~~K~~ 128 (212)
T d2a35a1 64 DTAFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-------------KSSIFYNRVKGE 128 (212)
T ss_dssp SEEEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-------------TCSSHHHHHHHH
T ss_pred heeeeeeeeecc--ccccccccccchhhhhhhccccccccccccccccccccccc-------------ccccchhHHHHH
Confidence 999999986432 22334578889999999999999999999999999998763 234689999999
Q ss_pred HHHHHHHHhhhcCCc-eEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeee
Q 040584 160 IEEICRDVHRSDSEW-KIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIH 238 (347)
Q Consensus 160 ~e~~~~~~~~~~~~~-~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 238 (347)
+|+.+++. ++ +++++||+.||||... . .+..++ . .. .... ....+++||
T Consensus 129 ~E~~l~~~-----~~~~~~I~Rp~~v~G~~~~-----~-----~~~~~~----~-~~-~~~~---------~~~~~~~i~ 178 (212)
T d2a35a1 129 LEQALQEQ-----GWPQLTIARPSLLFGPREE-----F-----RLAEIL----A-AP-IARI---------LPGKYHGIE 178 (212)
T ss_dssp HHHHHTTS-----CCSEEEEEECCSEESTTSC-----E-----EGGGGT----T-CC-CC-------------CHHHHHH
T ss_pred Hhhhcccc-----ccccceeeCCcceeCCccc-----c-----cHHHHH----H-HH-Hhhc---------cCCCCcEEE
Confidence 99988642 44 5899999999998321 0 011111 1 10 0111 112346799
Q ss_pred HHHHHHHHHHHHHh
Q 040584 239 VVDLADGHIAALRK 252 (347)
Q Consensus 239 v~D~a~a~~~~~~~ 252 (347)
++|+|++++.++++
T Consensus 179 v~DvA~ai~~~~~~ 192 (212)
T d2a35a1 179 ACDLARALWRLALE 192 (212)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999876
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.91 E-value=1.8e-23 Score=178.81 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=168.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++++|+.+..+...+++... +.++..+.+|++|++++.++++..
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999877776666666543 457889999999999999887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... ..+++...+++|+.++..+.+++. +.+-++||++||...+- +..
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~-----------~~~ 154 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-----------GNV 154 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-----------CCT
T ss_pred CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC-----------CCC
Confidence 7999999999765433 334567789999999998877643 44567999999987652 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.||.+.+.+.+.++.++ .++++.++.||.+-.+. ...+.+ ....+.. .. ++
T Consensus 155 ~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~-----------~~~~~~~~~~~~~~-~~-pl------- 214 (251)
T d2c07a1 155 GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDM-----------TDKISEQIKKNIIS-NI-PA------- 214 (251)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------CCHHHHHHHHT-TC-TT-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccc-----------ccccCHHHHHHHHh-cC-CC-------
Confidence 45689999999999999988875 37999999999887652 111222 2223222 11 11
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|-
T Consensus 215 ----~----R~~~pedvA~~v~fL~S~~-s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 215 ----G----RMGTPEEVANLACFLSSDK-SGYINGRVFVIDGGL 249 (251)
T ss_dssp ----S----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTS
T ss_pred ----C----CCcCHHHHHHHHHHHhCch-hCCCcCcEEEECCCc
Confidence 1 2567899999999998652 234678999997774
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=2.2e-23 Score=177.16 Aligned_cols=218 Identities=16% Similarity=0.166 Sum_probs=163.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|++++.+...+++ ..+..++.+|++|++++++++++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-------ADAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-------GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------hCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999876655444443 236788999999999998877643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... +.+++...+++|+.++..+.+.+. +.+-++||++||...+. +..
T Consensus 79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~-----------~~~ 147 (244)
T d1nffa_ 79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA-----------GTV 147 (244)
T ss_dssp SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCT
T ss_pred CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc-----------ccc
Confidence 6999999999765433 334566789999999998877543 34556999999987752 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+.+.++.++ .++++.++-||.+-.|..... .. ...
T Consensus 148 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~-------------------~~---~~~------- 198 (244)
T d1nffa_ 148 ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV-------------------PE---DIF------- 198 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS-------------------CT---TCS-------
T ss_pred cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh-------------------hH---HHH-------
Confidence 45789999999999999888875 379999999988765421000 00 000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
.....-+...+|+|+++.+++... .....|+++.+.+|..
T Consensus 199 ---~~pl~R~~~p~diA~~v~fL~s~~-s~~itG~~i~vDGG~~ 238 (244)
T d1nffa_ 199 ---QTALGRAAEPVEVSNLVVYLASDE-SSYSTGAEFVVDGGTV 238 (244)
T ss_dssp ---CCSSSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGG
T ss_pred ---hccccCCCCHHHHHHHHHHHhChh-hCCCcCCEEEECCCee
Confidence 001112678999999999998652 2346789999987753
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.90 E-value=4.3e-23 Score=185.75 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=167.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH-HHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA-ALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~~d 80 (347)
+|+|+|||||||||++|+++|+++||+|+++.|+..+... ..+.. ..+++.+.+|+.|.. .+..++. ++|
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~-----~~~v~~~~gD~~d~~~~~~~a~~--~~~ 73 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQA-----IPNVTLFQGPLLNNVPLMDTLFE--GAH 73 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHT-----STTEEEEESCCTTCHHHHHHHHT--TCS
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcc-----cCCCEEEEeeCCCcHHHHHHHhc--CCc
Confidence 5899999999999999999999999999999998765432 12211 357899999999855 4666777 688
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFI 160 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~ 160 (347)
++++..... ...++..+.+++++|++.+++++++.||...... .+..+..+|..+|...
T Consensus 74 ~~~~~~~~~------------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~---------~~~~~~~~~~~~k~~~ 132 (350)
T d1xgka_ 74 LAFINTTSQ------------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSL---------YGPWPAVPMWAPKFTV 132 (350)
T ss_dssp EEEECCCST------------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGG---------TSSCCCCTTTHHHHHH
T ss_pred eEEeecccc------------cchhhhhhhHHHHHHHHhCCCceEEEeecccccc---------CCcccchhhhhhHHHH
Confidence 888775321 1237778889999999999888888998654321 2233446677888888
Q ss_pred HHHHHHHhhhcCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCceeeeeeeH-
Q 040584 161 EEICRDVHRSDSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHV- 239 (347)
Q Consensus 161 e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v- 239 (347)
+..+++ .+++++++|++.+++........ . +.. .....+. ..+..++ +++..++++++
T Consensus 133 ~~~~~~-----~~~~~~~vr~~~~~~~~~~~~~~---~----~~~--~~~~~~~-~~~~~~~------~~~~~~~~i~~~ 191 (350)
T d1xgka_ 133 ENYVRQ-----LGLPSTFVYAGIYNNNFTSLPYP---L----FQM--ELMPDGT-FEWHAPF------DPDIPLPWLDAE 191 (350)
T ss_dssp HHHHHT-----SSSCEEEEEECEEGGGCBSSSCS---S----CBE--EECTTSC-EEEEESS------CTTSCEEEECHH
T ss_pred HHHHHh-----hccCceeeeeceeeccccccccc---c----ccc--ccccccc-ceeeecc------cCCCcceEEEeH
Confidence 877654 27889999999887642111100 0 000 0001111 1223333 56778888986
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHHHHHHHHHHHhCCCCCcccC
Q 040584 240 VDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKS 293 (347)
Q Consensus 240 ~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~e~~~~i~~~~g~~~~~~~~ 293 (347)
+|+++++..++.... ....++.|++++ +.+|+.|+++.+++++|++..+..+
T Consensus 192 ~Dva~~v~~~l~~~~-~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~v 243 (350)
T d1xgka_ 192 HDVGPALLQIFKDGP-QKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQV 243 (350)
T ss_dssp HHHHHHHHHHHHHCH-HHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEEC
T ss_pred HHHHHHHHHHHhCCh-hhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEEC
Confidence 799999999987621 123578999875 5799999999999999988655443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.4e-23 Score=178.42 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=168.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.++.+...+++... +.++.++.+|++|+++++++++..
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~----g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999999877777766666654 457889999999999988877542
Q ss_pred -CCcEEEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++|||||...... +.+++...+++|+.++..+.+++. +.+-.++|++||...+. +...
T Consensus 87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~-----------~~~~ 155 (255)
T d1fmca_ 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-----------KNIN 155 (255)
T ss_dssp SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-----------CCTT
T ss_pred CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc-----------cccc
Confidence 7999999999754332 344566789999999998877544 34556899999987652 3445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...|+.+|.+.+.+.+.++.+. .++++.++-||.+-.+.. ...+.+ ....+.... ++
T Consensus 156 ~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~----------~~~~~~e~~~~~~~~~--pl-------- 215 (255)
T d1fmca_ 156 MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDAL----------KSVITPEIEQKMLQHT--PI-------- 215 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHH----------HTTCCHHHHHHHHHTC--SS--------
T ss_pred cccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHh----------hccCCHHHHHHHHhcC--CC--------
Confidence 6789999999999999988875 479999999998765310 011112 222222211 11
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 216 ---~----R~g~pedvA~~v~fL~S~~-s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 216 ---R----RLGQPQDIANAALFLCSPA-ASWVSGQILTVSGGG 250 (255)
T ss_dssp ---C----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTS
T ss_pred ---C----CCcCHHHHHHHHHHHhCch-hcCCcCCEEEECcCc
Confidence 1 2567899999999998652 235688999998875
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.6e-23 Score=178.28 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=164.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.+..+...+++ +.+...+.+|++|.++++++++..
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL-------GANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh-------CCCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 589999999999999999999999999999999876665555444 236778999999999988877642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... ..+++...+++|+.++..+++++. +.+-++||++||...+- +..
T Consensus 77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~-----------~~~ 145 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM-----------GNG 145 (243)
T ss_dssp CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------CCT
T ss_pred CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC-----------CCC
Confidence 6999999999765443 234566789999999998887654 44557999999987652 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.||.+.+.+.+.++.++ .++++.++.||.+-.+. ...+.+ ....+.. +. ++
T Consensus 146 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~-----------~~~~~~~~~~~~~~-~~-pl------- 205 (243)
T d1q7ba_ 146 GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDM-----------TRALSDDQRAGILA-QV-PA------- 205 (243)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-----------HHTSCHHHHHHHHT-TC-TT-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechh-----------hhhhhhhHHHHHHh-cC-CC-------
Confidence 45789999999999999888875 47899999998775431 011111 2222222 11 11
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ -+...+|+|+++.+++... .....|+++++.+|..
T Consensus 206 ----~----R~~~pedvA~~v~fL~S~~-s~~itGq~i~vdGG~~ 241 (243)
T d1q7ba_ 206 ----G----RLGGAQEIANAVAFLASDE-AAYITGETLHVNGGMY 241 (243)
T ss_dssp ----S----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTSS
T ss_pred ----C----CCCCHHHHHHHHHHHhCch-hcCCcCCeEEECCCeE
Confidence 1 2567999999999998652 2346889999987754
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.2e-23 Score=177.83 Aligned_cols=225 Identities=17% Similarity=0.162 Sum_probs=160.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.+..+. .+.+ +..++.+|++|.+++++++++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~-~~~~---------~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV-AEAI---------GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHH-HHHH---------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHc---------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999998665332 2221 4567899999999988877643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... +.++++..+++|+.++.++.+++.. .+-++||++||...+ .+..
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~-----------~~~~ 143 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL-----------FAEQ 143 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT-----------SBCT
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc-----------cccc
Confidence 6999999999765433 3345667899999999998887553 345699999998875 2344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCC--Cce-EEecc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRR--PAL-TVFGT 223 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~g~ 223 (347)
...+|+.+|.+.+.+.+.++.++ .++++.++.||.+-.| +......... +.. ..+-
T Consensus 144 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~------------------~~~~~~~~~~~~~~~~~~~~- 204 (248)
T d2d1ya1 144 ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE------------------AVLEAIALSPDPERTRRDWE- 204 (248)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH------------------HHHHHHC--------CHHHH-
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCc------------------hHHHHhhcCCCHHHHHHHHH-
Confidence 56789999999999999888875 3799999999877543 1111110000 000 0000
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
+.....-+...+|+++++.+++.. ......|+++.+.+|-..|
T Consensus 205 -----~~~pl~R~~~pedia~~v~fL~S~-~s~~itG~~i~vDGG~tas 247 (248)
T d2d1ya1 205 -----DLHALRRLGKPEEVAEAVLFLASE-KASFITGAILPVDGGMTAS 247 (248)
T ss_dssp -----TTSTTSSCBCHHHHHHHHHHHHSG-GGTTCCSCEEEESTTGGGB
T ss_pred -----hcCCCCCCcCHHHHHHHHHHHhCc-hhcCCCCcEEEcCcCcccc
Confidence 001112356799999999999865 2235788999998875443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.90 E-value=5.7e-23 Score=175.65 Aligned_cols=224 Identities=18% Similarity=0.207 Sum_probs=162.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.++.+...++ + +.++.++.+|++|.++++++++..
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~---~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE---L----GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---T----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---h----CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999976554443332 2 346889999999999999887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... ..+.+...+++|+.++..+.+++. +.+-++||++||...+. +..
T Consensus 78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~-----------~~~ 146 (254)
T d1hdca_ 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM-----------GLA 146 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCT
T ss_pred CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc-----------ccc
Confidence 6999999999765443 334556789999999998877654 44567999999987652 344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.+|.+.+.+.+.++.++ .++++.++.||.+..| +............. ...|
T Consensus 147 ~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~------------------~~~~~~~~~~~~~~---~~~p 205 (254)
T d1hdca_ 147 LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP------------------MTAETGIRQGEGNY---PNTP 205 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH------------------HHHHHTCCCSTTSC---TTST
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc------------------cchhcCHHHHHHHH---hCCC
Confidence 56789999999999999988875 3789999999887643 22222111111110 0000
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ + |--...+|+|+++.+++... .....|+++.+.+|.+
T Consensus 206 l--~---R~g~~PedvA~~v~fL~S~~-a~~itG~~i~vDGG~t 243 (254)
T d1hdca_ 206 M--G---RVGNEPGEIAGAVVKLLSDT-SSYVTGAELAVDGGWT 243 (254)
T ss_dssp T--S---SCB-CHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTT
T ss_pred C--C---CCCCCHHHHHHHHHHHhchh-hCCCCCceEEeCCCcc
Confidence 0 1 11124799999999998652 2346889999988753
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=2.1e-23 Score=176.77 Aligned_cols=215 Identities=18% Similarity=0.160 Sum_probs=157.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
++|+++||||++.||++++++|+++|++|++++|+.... .++..+.+|++|.++++++++..
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~---------------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 70 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP---------------KGLFGVEVDVTDSDAVDRAFTAVEEH 70 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC---------------TTSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh---------------cCceEEEEecCCHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999987654 36678999999999998877643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||...... +.++++..+++|+.++..+.++ +++.+.++||++||...+. +.
T Consensus 71 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~-----------~~ 139 (237)
T d1uzma1 71 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW-----------GI 139 (237)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------------
T ss_pred cCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc-----------CC
Confidence 6999999999755433 3455677899999999888664 4455667999999987642 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
....+|+.+|.+.+.+.+.++.+. .++++.++.||.+..+. ...+.+...+..... .+
T Consensus 140 ~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~-----------~~~~~~~~~~~~~~~---~p------ 199 (237)
T d1uzma1 140 GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDM-----------TRALDERIQQGALQF---IP------ 199 (237)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-----------HHHSCHHHHHHHGGG---CT------
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChh-----------hhccCHHHHHHHHhc---CC------
Confidence 445689999999999999888775 47899999999876531 001111122221111 11
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..-+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 200 -------l~R~~~pedvA~~v~fL~S~~-s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 200 -------AKRVGTPAEVAGVVSFLASED-ASYISGAVIPVDGGM 235 (237)
T ss_dssp -------TCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTT
T ss_pred -------CCCCcCHHHHHHHHHHHhCch-hcCCcCCeEEECCCC
Confidence 112567899999999998652 235688999998774
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=1.1e-22 Score=172.79 Aligned_cols=218 Identities=17% Similarity=0.142 Sum_probs=160.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||++.||++++++|+++|++|++++|+..+.+...+. .+..++.+|++|++++++++++.
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA---------VGAHPVVMDVADPASVERGFAEALAHLG 76 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---------TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---------cCCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999976554433322 25678999999999999887643
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc----CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH----GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++|||||...... +.+++...+++|+.++..+.+++... +...++++||.... +...
T Consensus 77 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~------------~~~~ 144 (242)
T d1ulsa_ 77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL------------GNLG 144 (242)
T ss_dssp SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG------------CCTT
T ss_pred CceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc------------CCCC
Confidence 6999999999765433 33456778999999999998876543 34577777776543 3334
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 226 (347)
..+|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+- ...+.+ ......... ++
T Consensus 145 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~-----------~~~~~~~~~~~~~~~~--pl-------- 203 (242)
T d1ulsa_ 145 QANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRM-----------TAKVPEKVREKAIAAT--PL-------- 203 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT-----------TSSSCHHHHHHHHHTC--TT--------
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChh-----------hhcCCHHHHHHHHhcC--CC--------
Confidence 5689999999999999888875 37999999999887542 111222 222222211 11
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|..
T Consensus 204 ---~----R~~~pedia~~v~fL~S~~-s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 204 ---G----RAGKPLEVAYAALFLLSDE-SSFITGQVLFVDGGRT 239 (242)
T ss_dssp ---C----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTT
T ss_pred ---C----CCCCHHHHHHHHHHHhchh-hCCCCCcEEEECCCcc
Confidence 1 2457899999999998652 2356889999988764
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.90 E-value=1.4e-22 Score=172.88 Aligned_cols=224 Identities=13% Similarity=0.145 Sum_probs=159.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|++... ....+... +.++..+.+|++|.++++++++..
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~~----g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRNL----GRRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHHc----CCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999999876532 22333333 457889999999999999887542
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||.....+ +.+++...+++|+.++..+.+++. +.+-++||++||.... .+..
T Consensus 79 G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~-----------~~~~ 147 (247)
T d2ew8a1 79 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW-----------LKIE 147 (247)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG-----------SCCS
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc-----------ccCc
Confidence 6999999999765443 345667799999999998877644 4456799999998764 2344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.||.+.+.+.+.++.+. .++++.++.||.+-.|.... .... ....... ..
T Consensus 148 ~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~----------~~~~~~~~~~~~-~~---------- 206 (247)
T d2ew8a1 148 AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA----------SALSAMFDVLPN-ML---------- 206 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------------C-TT----------
T ss_pred ccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccc----------cccchhHHHHHH-Hh----------
Confidence 55789999999999999888875 37899999999876542100 0000 0000000 00
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
....-+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 207 -----~~l~r~~~pedvA~~v~fL~S~~-s~~itG~~i~vDGG~ 244 (247)
T d2ew8a1 207 -----QAIPRLQVPLDLTGAAAFLASDD-ASFITGQTLAVDGGM 244 (247)
T ss_dssp -----SSSCSCCCTHHHHHHHHHHTSGG-GTTCCSCEEEESSSC
T ss_pred -----ccCCCCCCHHHHHHHHHHHhCch-hcCCcCCeEEECCCE
Confidence 01112557899999999988652 234688999997774
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.90 E-value=1.6e-23 Score=179.73 Aligned_cols=231 Identities=16% Similarity=0.125 Sum_probs=164.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||++.||+++++.|+++|++|++.+|+.+..+...+++ +.++..+.+|++|+++++++++..
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-------~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI-------GPAACAIALDVTDQASIDRCVAELLDRWG 78 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------CCceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999766555444433 457889999999999999887643
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----c-CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----H-GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~-~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||.....+ +.+++...+++|+.++..+.+++.. . +..+||++||...+ .+..
T Consensus 79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~-----------~~~~ 147 (256)
T d1k2wa_ 79 SIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR-----------RGEA 147 (256)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT-----------SCCT
T ss_pred CccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhc-----------cccc
Confidence 7999999999765443 3345667899999999988875332 2 34699999998765 2444
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH--cCCC-Cc-eEEec
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA--VGRR-PA-LTVFG 222 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~g 222 (347)
....|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|. +........ .+.. .. ...+.
T Consensus 148 ~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
T d1k2wa_ 148 LVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEH--------------WDGVDAKFADYENLPRGEKKRQVG 213 (256)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTT--------------HHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchh--------------hhhhhhhhhhhccCChHHHHHHHH
Confidence 56789999999999999888775 37999999998776541 111111110 0000 00 00000
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
... ...-+...+|+|+++.+++... .....|+++.+.+|..+|
T Consensus 214 ~~~------PlgR~~~p~evA~~v~fL~S~~-a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 214 AAV------PFGRMGRAEDLTGMAIFLATPE-ADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp HHS------TTSSCBCHHHHHHHHHHTTSGG-GTTCCSCEEEESTTSSCC
T ss_pred hcC------CCCCCcCHHHHHHHHHHHhCch-hCCccCceEEECcchhhC
Confidence 000 0112567899999999988642 234688999998887654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.89 E-value=1.4e-22 Score=173.81 Aligned_cols=231 Identities=14% Similarity=0.084 Sum_probs=166.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----T 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 77 (347)
+|+++||||++.||++++++|+++|++|++++|++...+...+.+... +..+.++.+|+++.++++++++. .
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999877766666665543 45778889999999988876642 2
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|+|||+||...... ..+++...+++|+.++..+.+++. +.+.+++|++||..... +.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~-----------~~ 150 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS-----------AL 150 (258)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-----------CC
T ss_pred CCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc-----------cc
Confidence 4899999999765433 344567789999999998877654 34567999999988752 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+.+.+++++ .++++.++.||.+..|........ .........++.... +
T Consensus 151 ~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~----~~~~~~~~~~~~~~~--p-------- 216 (258)
T d1ae1a_ 151 PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKK----NPHQKEEIDNFIVKT--P-------- 216 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-----------------CHHHHHHHHHHS--T--------
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhh----hhhhHHHHHHHHhcC--C--------
Confidence 456789999999999999998885 378999999999876531111000 000111222222211 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
-+ -+...+|+|+++.+++... .....|+.+.+.+|-
T Consensus 217 ---lg----R~~~pediA~~v~fL~S~~-s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 217 ---MG----RAGKPQEVSALIAFLCFPA-ASYITGQIIWADGGF 252 (258)
T ss_dssp ---TC----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred ---CC----CCcCHHHHHHHHHHHhChh-hCCCcCcEEEeCCCe
Confidence 11 2678999999999999642 234688999997764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.89 E-value=1.1e-22 Score=174.44 Aligned_cols=236 Identities=18% Similarity=0.141 Sum_probs=167.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.+..+...+++..... +.++..+.+|++|++++++++++.
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP--DAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT--TCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC--CCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987776665555544322 457888999999999998887643
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||.... .. +.++++..+++|+.++..+.+++. +.+-++||++||...+ .+.
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~-----------~~~ 150 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI-----------RGI 150 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT-----------SBC
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhc-----------cCC
Confidence 69999999996432 21 345567799999999999887653 3456699999998764 133
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
....+|+.+|.+.+.+.+.++.++ .++++.++.||.+..|........ ................
T Consensus 151 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~--~~~~~~~~~~~~~~~~------------ 216 (258)
T d1iy8a_ 151 GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQ--LDPENPRKAAEEFIQV------------ 216 (258)
T ss_dssp SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHH--HCTTCHHHHHHHHHTT------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhh--cCcccHHHHHHHHHhc------------
Confidence 446789999999999999888875 379999999998765410000000 0000000111111111
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
....-+...+|+|+++.+++... .....|+++.|.+|.+
T Consensus 217 -----~pl~R~~~p~dvA~~v~fL~S~~-s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 217 -----NPSKRYGEAPEIAAVVAFLLSDD-ASYVNATVVPIDGGQS 255 (258)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTTT
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCch-hcCCcCceEEcCcchh
Confidence 01112567899999999998652 2356889999988864
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.89 E-value=7.3e-23 Score=175.76 Aligned_cols=228 Identities=15% Similarity=0.098 Sum_probs=154.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++++|+..+.+...+++... ..++..+.+|++|.++++++++..
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK----GFQVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999877776666665543 447889999999999888776431
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|++|||||...... +.+++...+++|+.++..+.+++. +.+.++||++||.... .+.
T Consensus 84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~-----------~~~ 152 (259)
T d1xq1a_ 84 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGV-----------VSA 152 (259)
T ss_dssp TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------------
T ss_pred CCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccc-----------ccc
Confidence 4899999999765433 344567789999999998877644 4456799999998764 133
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+.+.++.++ .++++.++-||.+-.|.... ...+...+....
T Consensus 153 ~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~----------~~~~~~~~~~~~------------ 210 (259)
T d1xq1a_ 153 SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEA----------VYDDEFKKVVIS------------ 210 (259)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------------------
T ss_pred cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhh----------hchHHHHHHHHh------------
Confidence 445789999999999999888875 47999999998876542100 000111111000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.....-+...+|+|+++.+++... .....|+++.+.+|..+
T Consensus 211 ----~~pl~R~~~pedvA~~v~fL~S~~-s~~iTG~~i~vDGG~s~ 251 (259)
T d1xq1a_ 211 ----RKPLGRFGEPEEVSSLVAFLCMPA-ASYITGQTICVDGGLTV 251 (259)
T ss_dssp -----------CCGGGGHHHHHHHTSGG-GTTCCSCEEECCCCEEE
T ss_pred ----CCCCCCCcCHHHHHHHHHHHhCch-hcCCcCcEEEeCCCEEC
Confidence 011122567899999999988642 23568899999877543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.7e-23 Score=174.14 Aligned_cols=223 Identities=15% Similarity=0.098 Sum_probs=163.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||++.||++++++|+++|++|++++|+.+..+...++ ..++..+.+|++|.++++++++++ ++|
T Consensus 7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE--------CPGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 37999999999999999999999999999999976554443332 236788999999999999999876 699
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH-----cCCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA-----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~-----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
++|||||...... +.+++...+++|+.++..+.+++.. .+.+++|++||...+. +.....
T Consensus 79 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~-----------~~~~~~ 147 (244)
T d1pr9a_ 79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR-----------AVTNHS 147 (244)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------CCTTBH
T ss_pred EEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc-----------cccchh
Confidence 9999999765443 3455667899999999988776442 2356999999987652 334456
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.+|.+.+.+.+.++.++ .++++.++.||.+..|..... .. -......... +. ++
T Consensus 148 ~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~-------~~-~~~~~~~~~~-~~-pl----------- 206 (244)
T d1pr9a_ 148 VYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQAT-------WS-DPHKAKTMLN-RI-PL----------- 206 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTT-------SC-SHHHHHHHHT-TC-TT-----------
T ss_pred hhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhh-------cc-ChHHHHHHHh-cC-CC-----------
Confidence 89999999999999888775 379999999998865410000 00 0112222222 11 11
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.-+...+|+|+++.+++... .....|+++.+.+|-
T Consensus 207 ----~R~~~peevA~~v~fL~S~~-a~~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 207 ----GKFAEVEHVVNAILFLLSDR-SGMTTGSTLPVEGGF 241 (244)
T ss_dssp ----CSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred ----CCCcCHHHHHHHHHHHhCch-hCCcCCcEEEECccH
Confidence 12567999999999988652 235688999997763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.89 E-value=4.8e-23 Score=176.77 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=165.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|.++||||++.||++++++|+++|++|++.+|+.++.+...+++.+. +.++.++.+|++|.++++++++..
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----GGHAVAVKVDVSDRDQVFAAVEQARKTLG 77 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 55799999999999999999999999999999887777666666554 457888999999999998887642
Q ss_pred CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcC-CCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHG-CKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~-~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||.....+ +.+.+...+++|+.++..+++++. +.+ ..+||++||...+ .+..
T Consensus 78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-----------~~~~ 146 (255)
T d1gega_ 78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH-----------VGNP 146 (255)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT-----------SCCT
T ss_pred CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc-----------ccCc
Confidence 6999999999765433 334566789999999998887643 333 4579999998764 2344
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHH--cCCC-Cc-eEEec
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVA--VGRR-PA-LTVFG 222 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~g 222 (347)
....|+.+|.+.+.+.+.++.++ .++++.++.||.+-.| .+..+..... .+.. .. ...+.
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (255)
T d1gega_ 147 ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP--------------MWAEIDRQVSEAAGKPLGYGTAEFA 212 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSH--------------HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred ccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccCh--------------HHhhhhhhhHhhhcccchhHHHHHH
Confidence 55789999999999999888775 3799999999887543 1111111111 1100 00 00000
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
......-+...+|+|+++.+++... .....|+++.+.+|-.
T Consensus 213 ------~~~pl~R~~~peevA~~v~fL~S~~-a~~itG~~i~vDGG~~ 253 (255)
T d1gega_ 213 ------KRITLGRLSEPEDVAACVSYLASPD-SDYMTGQSLLIDGGMV 253 (255)
T ss_dssp ------TTCTTCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESSSSS
T ss_pred ------hcCCCCCCcCHHHHHHHHHHHhCch-hCCccCcEEEecCCEE
Confidence 0001112567999999999999652 2356889999987753
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.89 E-value=9.2e-23 Score=173.57 Aligned_cols=224 Identities=14% Similarity=0.089 Sum_probs=163.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+.|+||||++.||++++++|+++|++|++.. |+....+...+++... +.++.++.+|++|.++++++++..
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----GGQAITFGGDVSKEADVEAMMKTAIDAW 77 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----TCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----CCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999998765 4444455555555544 457888999999999998887642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... +.++++..+++|+.++..+.+++. +.+-++||++||...+ .+..
T Consensus 78 g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~-----------~~~~ 146 (244)
T d1edoa_ 78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL-----------IGNI 146 (244)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH-----------HCCT
T ss_pred CCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhc-----------CCCC
Confidence 6999999999765443 344566789999999998877644 4456799999998765 2334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 225 (347)
....|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|- ...+.+ ....+.. +. ++
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~-----------~~~~~~~~~~~~~~-~~-pl------- 206 (244)
T d1edoa_ 147 GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDM-----------TAKLGEDMEKKILG-TI-PL------- 206 (244)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH-----------HHTTCHHHHHHHHT-SC-TT-------
T ss_pred CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHH-----------HHHhhHHHHHHHHh-cC-CC-------
Confidence 45789999999999999998885 47999999998875431 011112 2222222 11 11
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.-+...+|+|+++.+++.........|+++.+.+|-
T Consensus 207 --------~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 207 --------GRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp --------CSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred --------CCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCCe
Confidence 125678999999998865422334688999997774
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=7e-23 Score=174.12 Aligned_cols=223 Identities=17% Similarity=0.119 Sum_probs=162.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||++.||++++++|+++|++|++++|+.+..+...++ ..++..+.+|++|.++++++++++ ++|
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE--------CPGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 48999999999999999999999999999999876554433332 236788999999999999999876 699
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----c-CCCeEEEeccccccCCCCCCCCCCCCCCCCCC
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----H-GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMN 151 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~-~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~ 151 (347)
++|||||.....+ +.+.++..+++|+.++..+.+++.. . +-+++|++||...+. +.....
T Consensus 77 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~~~~~~ 145 (242)
T d1cyda_ 77 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV-----------TFPNLI 145 (242)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------CCTTBH
T ss_pred EEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc-----------cCCccc
Confidence 9999999765433 3345667899999999998876432 2 345899999987652 334457
Q ss_pred chhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCC
Q 040584 152 PYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKD 229 (347)
Q Consensus 152 ~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 229 (347)
.|+.+|.+.+.+.+.++.++ .++++.++-||.+-.|...... .-......+.... +
T Consensus 146 ~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~--------~~~~~~~~~~~~~--p------------ 203 (242)
T d1cyda_ 146 TYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS--------ADPEFARKLKERH--P------------ 203 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT--------CCHHHHHHHHHHS--T------------
T ss_pred cccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhc--------CCHHHHHHHHhcC--C------------
Confidence 89999999999999988875 3689999999887643100000 0011222222110 0
Q ss_pred CceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 230 GTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 230 ~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..-+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 204 ---l~R~~~peeva~~v~fL~S~~-s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 204 ---LRKFAEVEDVVNSILFLLSDR-SASTSGGGILVDAGY 239 (242)
T ss_dssp ---TSSCBCHHHHHHHHHHHHSGG-GTTCCSSEEEESTTG
T ss_pred ---CCCCcCHHHHHHHHHHHhCch-hcCcCCceEEeCcch
Confidence 112567899999999988652 235688999997764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=8.8e-23 Score=174.44 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=165.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++++|+.++.....+++.+.. +.++.++.+|++|++++++++++.
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4899999999999999999999999999999998777666555554332 457888999999999998887643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||.....+ +.+++...+++|+.++..+.+++.. .+-+++|++||....- .+..
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~----------~~~~ 151 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE----------VTMP 151 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC----------CCSS
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc----------ccCc
Confidence 6999999999765443 3445667889999999999887553 3456999999865421 1223
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCcc---HHHHHHHHcCCCCceEEecc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNL---MPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~ 223 (347)
....|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+.. ..+ ......+.... ++
T Consensus 152 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~-----------~~~~~~~~~~~~~~~~~--pl----- 213 (251)
T d1vl8a_ 152 NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMT-----------EAVFSDPEKLDYMLKRI--PL----- 213 (251)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTT-----------HHHHTCHHHHHHHHHTC--TT-----
T ss_pred cccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHH-----------HhccCCHHHHHHHHhcC--CC-----
Confidence 35689999999999999888875 379999999998865410 001 11222222211 11
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++... .....|+++.|.+|.
T Consensus 214 ------~----R~~~pedvA~~v~fL~S~~-a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 214 ------G----RTGVPEDLKGVAVFLASEE-AKYVTGQIIFVDGGW 248 (251)
T ss_dssp ------S----SCBCGGGGHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred ------C----CCCCHHHHHHHHHHHhCch-hCCCcCcEEEeCcCe
Confidence 1 2457899999999988652 235688999997774
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.89 E-value=4.2e-22 Score=171.10 Aligned_cols=235 Identities=15% Similarity=0.132 Sum_probs=167.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|.+|||||++.||++++++|+++|++|++.+|+.+..+...+++... +.++.++.+|++|+++++++++..
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA----GVEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 477899999999999999999999999999999877777666666554 457889999999999998877642
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH------cCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA------HGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~------~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|++|||||...... +.+++...+++|+.++..+.+++.. .+..++|++||...+ .+
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~-----------~~ 146 (257)
T d2rhca1 78 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK-----------QG 146 (257)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT-----------SC
T ss_pred CCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc-----------cc
Confidence 6999999999765433 3445677899999999999987653 344589999998765 23
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCC-CCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDP-RGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
......|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|......+.. .......-....++... +
T Consensus 147 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~----- 217 (257)
T d2rhca1 147 VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITAR----V----- 217 (257)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTT----S-----
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhc----C-----
Confidence 4445789999999999999999886 3589999999877543000000000 00000000011111111 0
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
...-+...+|+|+++.+++... .....|+++.+.+|-
T Consensus 218 --------PlgR~~~pedia~~v~fL~S~~-s~~itG~~i~vDGG~ 254 (257)
T d2rhca1 218 --------PIGRYVQPSEVAEMVAYLIGPG-AAAVTAQALNVCGGL 254 (257)
T ss_dssp --------TTSSCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTC
T ss_pred --------CCCCCcCHHHHHHHHHHHhCch-hcCCcCceEEECcCc
Confidence 0112567999999999998652 235788999997763
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.89 E-value=7.1e-22 Score=170.71 Aligned_cols=231 Identities=15% Similarity=0.132 Sum_probs=164.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++++|+.+..+...+++.. ...+.++.+|++|+++++++++..
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-----PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999999999987666555544432 346778999999999999887542
Q ss_pred -CCcEEEEccccccCCc------cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE------SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|++|||||...... ..+.++..+++|+.++..+.+++.. .+-.++|++||...+- +
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~-----------~ 149 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFT-----------A 149 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTC-----------C
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccc-----------c
Confidence 6999999999654321 2334667889999999988876543 3556999999987642 2
Q ss_pred CCC-CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 147 LQA-MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 147 ~~~-~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
..+ ...|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|..... ...-..............+
T Consensus 150 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~-------~~~~~~~~~~~~~~~~~~~----- 217 (268)
T d2bgka1 150 GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDV-------FGVDSSRVEELAHQAANLK----- 217 (268)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTS-------SSCCHHHHHHHHHHTCSSC-----
T ss_pred ccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhh-------hcCCHHHHHHHHHhccccC-----
Confidence 222 2379999999999999888775 379999999998877632111 1111122222221111010
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.-+...+|+|+++.+++... .....|+++.|.+|.+.
T Consensus 218 ----------gr~~~pedvA~~v~fL~S~~-s~~itGq~i~VDGG~t~ 254 (268)
T d2bgka1 218 ----------GTLLRAEDVADAVAYLAGDE-SKYVSGLNLVIDGGYTR 254 (268)
T ss_dssp ----------SCCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred ----------CCCcCHHHHHHHHHHHhChh-hCCccCceEEECcCccc
Confidence 12567899999999999652 23568899999887543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.89 E-value=2.1e-22 Score=172.94 Aligned_cols=227 Identities=15% Similarity=0.062 Sum_probs=164.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.. ..+...+.+... +.++.++.+|++|+++++++++..
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV----GGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999998764 344444555443 457888999999999998887642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCC-eEEEeccccccCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCK-NLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~-~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|++|||||...... +.+++...+++|+.++..+.+++. +.+.+ +||++||...+ .+
T Consensus 83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~-----------~~ 151 (261)
T d1geea_ 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK-----------IP 151 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT-----------SC
T ss_pred hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhc-----------cc
Confidence 6999999999765433 344566789999999998877643 34433 58899998764 23
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccH--HHHHHHHcCCCCceEEec
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLM--PFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g 222 (347)
......|+.+|.+.+.+.+.++.++ .++++.++-||.+..|. ..... +.......... ++
T Consensus 152 ~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~-----------~~~~~~~~~~~~~~~~~~-pl---- 215 (261)
T d1geea_ 152 WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI-----------NAEKFADPEQRADVESMI-PM---- 215 (261)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGG-----------GHHHHHSHHHHHHHHTTC-TT----
T ss_pred CccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHh-----------HhhhcCCHHHHHHHHhcC-CC----
Confidence 4445789999999999999888775 37999999999876541 00000 11111111110 11
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.-+...+|+|+++.+++... .....|+++.+.+|..+
T Consensus 216 -----------~R~~~pediA~~v~fL~S~~-s~~itG~~i~vDGG~sl 252 (261)
T d1geea_ 216 -----------GYIGEPEEIAAVAAWLASSE-ASYVTGITLFADGGMTL 252 (261)
T ss_dssp -----------SSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred -----------CCCCCHHHHHHHHHHHhCch-hcCCcCCeEEECCCeeC
Confidence 12567899999999998652 23568899999887643
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.89 E-value=2e-22 Score=173.38 Aligned_cols=237 Identities=13% Similarity=0.081 Sum_probs=162.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc-hhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN-ASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.. ..+...+.+.... +.++.++.+|++|.+++++++++.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH---GVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH---TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999998754 3333444443322 457888999999999999887643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||...... +.+++...+++|+.++..+.+++ ++.+-++||++||...+. +.
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-----------~~ 149 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-----------AS 149 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CC
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee-----------cc
Confidence 6999999999765443 33456678999999998886654 445567999999987752 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCce-EEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPAL-TVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ 224 (347)
.....|+.+|.+.+.+.+.++.+. .++++.++.||.+-.|..... +............... ..+..
T Consensus 150 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~- 218 (260)
T d1x1ta1 150 ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ----------ISALAEKNGVDQETAARELLSE- 218 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------------CHHH-
T ss_pred CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhh----------hhhhhhhcCCChHHHHHHHHHh-
Confidence 445689999999999999998875 479999999998765421000 0000000000000000 00000
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.....-+...+|+|+++.+++... .....|+++++.+|-
T Consensus 219 -----~~Pl~R~g~pediA~~v~fL~S~~-a~~itG~~i~vDGG~ 257 (260)
T d1x1ta1 219 -----KQPSLQFVTPEQLGGTAVFLASDA-AAQITGTTVSVDGGW 257 (260)
T ss_dssp -----HCTTCCCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred -----cCCCCCCcCHHHHHHHHHHHhChh-hCCCcCCEEEECcch
Confidence 000112567999999999998652 235688999997773
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.89 E-value=2e-22 Score=172.30 Aligned_cols=225 Identities=14% Similarity=0.115 Sum_probs=161.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.+..+...+.+. ...++.++.+|++|+++++++++..
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG-----TPDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999997665554444432 1457889999999999998877643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCC-eEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCK-NLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~-~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||...... +.+++...+++|+.++..+.+++.. .+.+ +||++||...+ .+.
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~-----------~~~ 149 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF-----------VGD 149 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT-----------SCC
T ss_pred CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecccee-----------ccC
Confidence 6999999999765443 3345567899999999999887543 3443 89999998764 233
Q ss_pred CCCCchhhhHHHHHHHHHHHhhh----cCCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRS----DSEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
+....|+.+|.+.+.+.+.++.+ ..++++.++.||.+-.|.. .....+ ........ ..+
T Consensus 150 ~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~----------~~~~~~--~~~~~~~~-~~p---- 212 (251)
T d1zk4a1 150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLV----------DDLPGA--EEAMSQRT-KTP---- 212 (251)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHH----------HTSTTH--HHHHTSTT-TCT----
T ss_pred CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhH----------HhcCCH--HHHHHHHh-CCC----
Confidence 44568999999999999887765 2479999999998765310 000000 11111110 011
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..-+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 213 ---------l~R~~~pedvA~~v~fL~S~~-s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 213 ---------MGHIGEPNDIAYICVYLASNE-SKFATGSEFVVDGGY 248 (251)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred ---------CCCCcCHHHHHHHHHHHhCch-hCCCcCcEEEECccc
Confidence 112568999999999988652 234678999997763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.3e-22 Score=173.05 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=161.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.+..+...++ .++..++.+|++|.+++++++++.
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~--------~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE--------LPGAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------CTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------cCCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999876554443332 246788999999999999887643
Q ss_pred -CCcEEEEccccccCC-c----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVG-E----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~-~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||..... . +.++++..+++|+.++..+.+++... +-+++|++||...+- +..
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~-----------~~~ 146 (250)
T d1ydea1 78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI-----------GQA 146 (250)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH-----------CCT
T ss_pred CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc-----------ccc
Confidence 699999999964322 1 23456778999999999887765432 236999999987652 334
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...+|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|..... . .........+.+..... +
T Consensus 147 ~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~---~-~~~~~~~~~~~~~~~~~--p--------- 211 (250)
T d1ydea1 147 QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEEL---A-ALMPDPRASIREGMLAQ--P--------- 211 (250)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHH---H-TTSSSHHHHHHHHHHTS--T---------
T ss_pred CcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHH---h-hcCCCHHHHHHHHHhcC--C---------
Confidence 55789999999999999888875 379999999988754310000 0 00000111222222111 1
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
..-+...+|+|+++.+++.. .....|+++.+.+|..+
T Consensus 212 ------l~R~g~p~eva~~v~fL~Sd--a~~itG~~i~vDGG~~l 248 (250)
T d1ydea1 212 ------LGRMGQPAEVGAAAVFLASE--ANFCTGIELLVTGGAEL 248 (250)
T ss_dssp ------TSSCBCHHHHHHHHHHHHHH--CTTCCSCEEEESTTTTS
T ss_pred ------CCCCCCHHHHHHHHHHHhCc--cCCCcCCeEEECCCccc
Confidence 11256799999999998864 24568899999887543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.88 E-value=1.5e-22 Score=173.84 Aligned_cols=230 Identities=15% Similarity=0.068 Sum_probs=166.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----T 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.++.+...+++... +.++.++.+|++|++++++++++ +
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK----GFKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999877776666666543 45778899999999988877643 2
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||...... +.+++...+++|+.++..+.+++. +.+-++||++||.... .+.
T Consensus 84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~-----------~~~ 152 (259)
T d2ae2a_ 84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA-----------LAV 152 (259)
T ss_dssp TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT-----------SCC
T ss_pred CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccc-----------ccc
Confidence 4899999999765433 334566799999999998877654 3445699999998764 233
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|....... .......+.++.... ++
T Consensus 153 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-----~~~~~~~~~~~~~~~--pl------- 218 (259)
T d2ae2a_ 153 PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQ-----DPEQKENLNKLIDRC--AL------- 218 (259)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTT-----SHHHHHHHHHHHHTS--TT-------
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhh-----chhhHHHHHHHHhcC--CC-------
Confidence 455789999999999999998875 37899999998875431000000 000011222222211 11
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|-
T Consensus 219 ----~----R~g~pedvA~~v~fL~S~~-s~~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 219 ----R----RMGEPKELAAMVAFLCFPA-ASYVTGQIIYVDGGL 253 (259)
T ss_dssp ----C----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTG
T ss_pred ----C----CCcCHHHHHHHHHHHhCch-hCCCcCcEEEECCCe
Confidence 1 2567899999999988652 234688999997774
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.88 E-value=4.4e-22 Score=171.14 Aligned_cols=234 Identities=18% Similarity=0.118 Sum_probs=164.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++++|+.+..+...+.+... +.++..+.+|++|.++++++++..
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999877666666555543 457889999999999998887643
Q ss_pred -CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++||+||.... .+ +.+++...+++|+.++..+.+++. +.+-++||++||...+. +.
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~-----------~~ 149 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK-----------GP 149 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS-----------CC
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc-----------CC
Confidence 79999999996532 22 334566788999999998877654 34566999999987652 33
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCC-----CCCCCCCCCccHH-HHHHHHcCCCCceE
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGK-----GEDPRGIPNNLMP-FVTQVAVGRRPALT 219 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 219 (347)
....+|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+..... ............. ....+.... +
T Consensus 150 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--P-- 225 (260)
T d1zema1 150 PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV--P-- 225 (260)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTS--T--
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcC--C--
Confidence 445689999999999999888875 368999999998765310000 0000000000111 111111110 0
Q ss_pred EecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 220 VFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 220 ~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
..-+...+|+|+++.+++... .....|+++.|.+|
T Consensus 226 -------------l~R~g~pedvA~~v~fL~S~~-s~~itG~~i~VDGG 260 (260)
T d1zema1 226 -------------MRRYGDINEIPGVVAFLLGDD-SSFMTGVNLPIAGG 260 (260)
T ss_dssp -------------TSSCBCGGGSHHHHHHHHSGG-GTTCCSCEEEESCC
T ss_pred -------------CCCCcCHHHHHHHHHHHhCch-hcCccCCeEEeCCC
Confidence 112567899999999999752 23567899988664
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.88 E-value=7.9e-22 Score=168.66 Aligned_cols=224 Identities=15% Similarity=0.123 Sum_probs=160.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.++.+...+++ +.+..++.+|++|.++++++++..
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-------GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-------CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999998766555444433 346788999999999988877643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++|||||...... +.++++..+++|+.++..+++++... +-.+||++||...+ .+...
T Consensus 79 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~-----------~~~~~ 147 (253)
T d1hxha_ 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW-----------LPIEQ 147 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT-----------SCCTT
T ss_pred CCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh-----------cCccc
Confidence 6999999999765433 33456779999999999888775542 23699999998764 23445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc----CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCC-CCce-EEecc
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGR-RPAL-TVFGT 223 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~ 223 (347)
...|+.+|.+.+.+.+.++.+. .++++.++-||.+..| +........ .... ....
T Consensus 148 ~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~------------------~~~~~~~~~~~~~~~~~~~- 208 (253)
T d1hxha_ 148 YAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTP------------------MMQASLPKGVSKEMVLHDP- 208 (253)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCH------------------HHHHHSCTTCCHHHHBCBT-
T ss_pred cccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCH------------------hHHhhCcchhhHHHHHhCc-
Confidence 5789999999999998887664 2589999999887643 111111000 0000 0000
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.-.....+...+|+|+++.+++... .....|+++++.+|
T Consensus 209 -----~~~~~gr~~~pedvA~~v~fL~S~~-s~~itG~~i~VDGG 247 (253)
T d1hxha_ 209 -----KLNRAGRAYMPERIAQLVLFLASDE-SSVMSGSELHADNS 247 (253)
T ss_dssp -----TTBTTCCEECHHHHHHHHHHHHSGG-GTTCCSCEEEESSS
T ss_pred -----cccccCCCCCHHHHHHHHHHHhChh-hCCCcCcEEEECcc
Confidence 0011123677899999999998652 23468899999766
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.1e-22 Score=174.30 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=166.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-YQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.++.+...+++..... ..+.++..+.+|++|.++++++++..
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 91 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDT 91 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999988777776666654322 23567889999999999999887642
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||...... ..+++...+++|+.++..+.+++.. .+..++|++||.... +.
T Consensus 92 ~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~------------~~ 159 (297)
T d1yxma1 92 FGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA------------GF 159 (297)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT------------CC
T ss_pred hCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc------------cc
Confidence 6999999999755433 3345667899999999998887553 345578888775432 22
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
.....|+.+|.+.+.+.+.++.++ .++++.++.||.+..+... .......+ .........++
T Consensus 160 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~-------~~~~~~~~---~~~~~~~~~~p------ 223 (297)
T d1yxma1 160 PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAV-------ENYGSWGQ---SFFEGSFQKIP------ 223 (297)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGG-------TTSGGGGG---GGGTTGGGGST------
T ss_pred cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchh-------hhccccCH---HHHHHHHhcCC------
Confidence 345689999999999999998886 4799999999988764210 00000000 00110000000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
..-+...+|+|+++.+++... .....|+++.|.+|.+
T Consensus 224 -------lgR~g~pedvA~~v~fL~Sd~-s~~iTG~~i~VDGG~s 260 (297)
T d1yxma1 224 -------AKRIGVPEEVSSVVCFLLSPA-ASFITGQSVDVDGGRS 260 (297)
T ss_dssp -------TSSCBCTHHHHHHHHHHHSGG-GTTCCSCEEEESTTGG
T ss_pred -------CCCCcCHHHHHHHHHHHhCch-hcCcCCcEEEeCcChh
Confidence 112567899999999999652 2356889999987753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=9.4e-22 Score=168.52 Aligned_cols=234 Identities=18% Similarity=0.134 Sum_probs=162.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++++|+.++.+...+.+.+.. .+.++.++.+|++|.++++++++..
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999998777666555554321 1346788999999999999887542
Q ss_pred -CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHH----cC---CCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAA----HG---CKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~----~~---~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++|||||... .+++++.+++|+.++..+..++.. .+ ..+||++||...+ .+...
T Consensus 81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~-----------~~~~~ 145 (254)
T d2gdza1 81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL-----------MPVAQ 145 (254)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT-----------SCCTT
T ss_pred CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc-----------cCCCC
Confidence 6999999999754 345678899999998887666543 22 2479999998765 24445
Q ss_pred CCchhhhHHHHHHHHHH--Hhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccC
Q 040584 150 MNPYGRSKLFIEEICRD--VHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDY 225 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~--~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 225 (347)
...|+.+|.+.+.+.+. ++.++ .++++.++.||.+-.|-...... .............+..
T Consensus 146 ~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~~~~~~------------- 210 (254)
T d2gdza1 146 QPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEK--EENMGQYIEYKDHIKD------------- 210 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGC--HHHHGGGGGGHHHHHH-------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccc--cccccccHHHHHHHHh-------------
Confidence 56899999999998875 33332 47999999998875320000000 0000000000000000
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcccHH
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTSVL 274 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s~~ 274 (347)
.....-+...+|+|+++++++.+ +...|+++.|.+|..+.++
T Consensus 211 ----~~p~~r~~~pedvA~~v~fL~s~---~~itG~~i~VdGG~~~~~~ 252 (254)
T d2gdza1 211 ----MIKYYGILDPPLIANGLITLIED---DALNGAIMKITTSKGIHFQ 252 (254)
T ss_dssp ----HHHHHCCBCHHHHHHHHHHHHHC---TTCSSCEEEEETTTEEEEC
T ss_pred ----cCCCCCCcCHHHHHHHHHHHHcC---CCCCCCEEEECCCCeeecc
Confidence 00011245789999999999986 3478899999988766544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.87 E-value=7.8e-22 Score=170.07 Aligned_cols=239 Identities=15% Similarity=0.107 Sum_probs=160.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++++|+.++.+...+++..... ...++.++.+|++|.++++++++..
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV-SEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987777766666655421 2246889999999999999887642
Q ss_pred -CCcEEEEccccccCCc--------cccCcchhhhhhhhHHHHHHHHHHHc---CCCeEEEeccccc-cCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE--------SVQKPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSSATA-YGWPKVVPCTEE 144 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS~~~-yg~~~~~~~~e~ 144 (347)
++|++|||||...... +.++++..+++|+.++..+.+++... +-.++|+++|... +
T Consensus 84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~----------- 152 (264)
T d1spxa_ 84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL----------- 152 (264)
T ss_dssp SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS-----------
T ss_pred CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccc-----------
Confidence 6999999999643211 23456678999999999888765532 2346666666542 2
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.+|.+.+.+.+.++.++ .++++.++.||.+--+.......... ...........+...- ++
T Consensus 153 ~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~-~~~~~~~~~~~~~~~~--Pl---- 225 (264)
T d1spxa_ 153 HATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEE-TSKKFYSTMATMKECV--PA---- 225 (264)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC---------------HHHHHHHHHHC--TT----
T ss_pred ccCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHH-HHHHHHHHHHHHHhcC--CC----
Confidence 133344679999999999999888875 37999999999886542211111000 0011111122211110 00
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ -+...+|+|+++.+++.........|+++.+.+|.+
T Consensus 226 -------~----R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 226 -------G----VMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp -------S----SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred -------C----CCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChh
Confidence 1 256789999999998853212346889999987754
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.87 E-value=8.4e-22 Score=170.64 Aligned_cols=239 Identities=11% Similarity=0.078 Sum_probs=165.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.++.+...+++..... ...++..+.+|++|.++++++++..
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999987777666666655421 2246789999999999988877643
Q ss_pred -CCcEEEEccccccCCc------cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE------SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~------~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|++|||||...... +.+.+...+++|+.++..+.+++.. .+-++++++||...+ .+
T Consensus 83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~-----------~~ 151 (274)
T d1xhla_ 83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGP-----------QA 151 (274)
T ss_dssp SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSS-----------SC
T ss_pred CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhcc-----------cc
Confidence 6999999999643221 2234667899999999988776553 345578888876543 13
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
......|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|....... ..................++
T Consensus 152 ~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~-----~~~~~~~~~~~~~~~~~~iP----- 221 (274)
T d1xhla_ 152 HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGL-----PETASDKLYSFIGSRKECIP----- 221 (274)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTC-----CHHHHHHHHHHHHHCTTTCT-----
T ss_pred CCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcc-----cchhhHHHHHHHHHHHcCCC-----
Confidence 3345689999999999998888775 37999999999886541000000 00011111222111111111
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
..-+...+|+|+++.+++.........|+++.+.+|..
T Consensus 222 --------lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 222 --------VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp --------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred --------CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 11256799999999998842112346889999988854
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.87 E-value=1.2e-21 Score=166.33 Aligned_cols=222 Identities=21% Similarity=0.193 Sum_probs=160.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.+......+ ++ +.++.++.+|++++++++++++..
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~----~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA---AL----EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TC----CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hc----CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998655443332 22 457888999999999998877643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHcC--CCeEEEeccccccCCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAHG--CKNLVFSSSATAYGWPKVVPCTEEFPLQAM 150 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~ 150 (347)
++|++|||||...... +.+.+...+++|+.++..+.+++...- -+.++++||.... +....
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~------------~~~~~ 145 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL------------GAFGL 145 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC------------CHHHH
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc------------cccCc
Confidence 6999999999765433 334556788999999999998876542 3355555554432 22234
Q ss_pred CchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCC
Q 040584 151 NPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
..|+.+|.+.|.+.+.+++++ .++++.++.||.+-.+. ...+.+ ...+..+.. ++
T Consensus 146 ~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~-----------~~~~~~~~~~~~~~~~--p~--------- 203 (241)
T d2a4ka1 146 AHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPM-----------TAGLPPWAWEQEVGAS--PL--------- 203 (241)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGG-----------GTTSCHHHHHHHHHTS--TT---------
T ss_pred cccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHH-----------HHhhhHhHHHHHHhCC--CC---------
Confidence 679999999999999998886 36999999998875431 111222 333333211 11
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|.++
T Consensus 204 --~----r~~~p~dva~~v~fL~S~~-s~~itG~~i~vDGG~s~ 240 (241)
T d2a4ka1 204 --G----RAGRPEEVAQAALFLLSEE-SAYITGQALYVDGGRSI 240 (241)
T ss_dssp --C----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTTTT
T ss_pred --C----CCcCHHHHHHHHHHHhcch-hCCCcCceEEeCCCccc
Confidence 1 2567999999999999652 23468899999888643
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.86 E-value=2.7e-21 Score=166.31 Aligned_cols=232 Identities=15% Similarity=0.100 Sum_probs=164.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++++|+........+++.+.. +.++.++.+|++|++++.++++..
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF---GVKTKAYQCDVSNTDIVTKTIQQIDADL 85 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH---TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999887766666554332 457889999999999998887532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----c-CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----H-GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~-~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
++|++|||||...... +.++++..+++|+.++..+.+++.. . +.++++..||...+....... .+.
T Consensus 86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~----~~~ 161 (260)
T d1h5qa_ 86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL----NGS 161 (260)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET----TEE
T ss_pred CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc----ccC
Confidence 6999999999765433 3345667889999999988775432 2 344677777765532111000 112
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEeccc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 224 (347)
.....|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+. ...+.+ ........- ++
T Consensus 162 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~-----------~~~~~~~~~~~~~~~~--pl------ 222 (260)
T d1h5qa_ 162 LTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQ-----------TAHMDKKIRDHQASNI--PL------ 222 (260)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGG-----------GGGSCHHHHHHHHHTC--TT------
T ss_pred ccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcc-----------hhccCHHHHHHHHhcC--CC------
Confidence 234679999999999999888775 37999999999876541 111222 222222211 11
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 223 -----~----R~g~pedvA~~v~fL~S~~-s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 223 -----N----RFAQPEEMTGQAILLLSDH-ATYMTGGEYFIDGGQ 257 (260)
T ss_dssp -----S----SCBCGGGGHHHHHHHHSGG-GTTCCSCEEEECTTG
T ss_pred -----C----CCcCHHHHHHHHHHHhcch-hCCCcCceEEECCCe
Confidence 1 2567899999999988652 234688999998775
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.86 E-value=2.6e-21 Score=164.05 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=135.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCe-------EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYK-------TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~-------v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
+.|+||||++.||++++++|+++|++ |++.+|+....+...+++... +.++.++.+|++|.++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dvt~~~~v~~~~~ 77 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE----GALTDTITADISDMADVRRLTT 77 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT----TCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHH
Confidence 45899999999999999999999987 888888876666655555443 4577889999999999988775
Q ss_pred cC-----CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCC
Q 040584 76 GT-----KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCT 142 (347)
Q Consensus 76 ~~-----~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~ 142 (347)
.. ++|++|||||...... +.+++...+++|+.++..+.+++. +.+-+++|++||...+.
T Consensus 78 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~-------- 149 (240)
T d2bd0a1 78 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK-------- 149 (240)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC--------
Confidence 42 6999999999765443 334566789999999998877644 44567999999987752
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 143 EEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 143 e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
+......|+.||.+.+.+.+.++.+. .++++.++.||.+-.|
T Consensus 150 ---~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~ 193 (240)
T d2bd0a1 150 ---AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTP 193 (240)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCST
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCc
Confidence 33445789999999999999888775 4789999999987654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.86 E-value=2.5e-21 Score=167.57 Aligned_cols=240 Identities=11% Similarity=0.066 Sum_probs=161.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++.+|+.++.+...+.+.+... ...++..+.+|++|+++++++++..
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV-SEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987776666666554311 2346788999999999998877643
Q ss_pred -CCcEEEEccccccCCcc----cc----CcchhhhhhhhHHHHHHHHHHHc---CCCeEEEecc-ccccCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQ----KPLPYFDNNLTGTITLLEVMAAH---GCKNLVFSSS-ATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~----~~~~~~~~nv~~~~~l~~~~~~~---~~~~iv~~SS-~~~yg~~~~~~~~e~ 144 (347)
++|++|||||....... .+ .+...+++|+.++..+.+++... +-..+|+++| ....
T Consensus 84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~----------- 152 (272)
T d1xkqa_ 84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP----------- 152 (272)
T ss_dssp SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS-----------
T ss_pred CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc-----------
Confidence 69999999997543221 11 25567889999999888865532 2235565555 3332
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
.+......|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+..... ....................++
T Consensus 153 ~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~-----~~~~~~~~~~~~~~~~~~~~~P--- 224 (272)
T d1xkqa_ 153 QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAM-----GMPDQASQKFYNFMASHKECIP--- 224 (272)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHT-----TCCHHHHHHHHHHHHHCTTTCT---
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhcc-----CCchHHHHHHHHHHHHHhcCCC---
Confidence 133445679999999999999888775 479999999998754310000 0000011111111111111111
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
..-+...+|+|+++.+++.........|+++.+.+|..+
T Consensus 225 ----------lgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 225 ----------IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 263 (272)
T ss_dssp ----------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred ----------CCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHH
Confidence 112567899999999988531112367899999888654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.86 E-value=4.7e-21 Score=166.04 Aligned_cols=231 Identities=16% Similarity=0.121 Sum_probs=156.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT----- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----- 77 (347)
|+++||||++.||+++++.|+++|++|++++|+.++.++..+++ +.++..+.+|+++.++++++++..
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~-------~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH-------GDNVLGIVGDVRSLEDQKQAASRCVARFG 78 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCCeeEEecccccHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999765554433332 347888999999999988876542
Q ss_pred CCcEEEEccccccCCc-----ccc----CcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE-----SVQ----KPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~-----~~~----~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++|||||...... ..+ .++..+++|+.++..+.+++. +.+ .++|++||...+
T Consensus 79 ~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~----------- 146 (276)
T d1bdba_ 79 KIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGF----------- 146 (276)
T ss_dssp CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGT-----------
T ss_pred CcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhc-----------
Confidence 6999999999643221 111 256789999999998877654 333 588988887654
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc-CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD-SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
.+......|+.+|.+.+.+.+.++.+. +++++.++.||.+-.+-.......... ................ ++
T Consensus 147 ~~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-Pl----- 219 (276)
T d1bdba_ 147 YPNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGS-KAISTVPLADMLKSVL-PI----- 219 (276)
T ss_dssp STTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC----------CHHHHHTTTC-TT-----
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhh-hccCcHHHHHHHHhcC-CC-----
Confidence 133345679999999999999998886 458999999998865421111000000 0000011111111111 11
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
+ -+...+|+|+++.+++.........|++++|.+|-
T Consensus 220 ------g----R~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~ 255 (276)
T d1bdba_ 220 ------G----RMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGL 255 (276)
T ss_dssp ------S----SCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSG
T ss_pred ------C----CCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcCh
Confidence 1 14568999999988774211235788999998774
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.2e-21 Score=164.57 Aligned_cols=173 Identities=17% Similarity=0.138 Sum_probs=133.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|++|||||++.||.++++.|+++|++|++.+|+..+.+...+++..... ..++.++.+|++|++++.++++..
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999987777766666665421 346788999999999998877643
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHH----HcC--CCeEEEeccccccCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMA----AHG--CKNLVFSSSATAYGWPKVVPCTEEFP 146 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~~--~~~iv~~SS~~~yg~~~~~~~~e~~~ 146 (347)
++|++|||||...... +.+.++..+++|+.++..+.+++. +.+ -++||++||...+.. .|
T Consensus 88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~---------~p 158 (257)
T d1xg5a_ 88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---------LP 158 (257)
T ss_dssp CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------CS
T ss_pred CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC---------CC
Confidence 6999999999765433 344566788899999988766643 333 359999999876421 12
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhc----CCceEEEeeccccc
Q 040584 147 LQAMNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPV 185 (347)
Q Consensus 147 ~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~ 185 (347)
......|+.+|.+.+.+.+.++.+. .++++.++-||.+=
T Consensus 159 ~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~ 201 (257)
T d1xg5a_ 159 LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVE 201 (257)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBC
T ss_pred CcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCC
Confidence 3334569999999999999887653 47899999887654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=5.8e-21 Score=163.99 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=157.1
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+| .||++++++|+++|++|++.+|+....+.. ++.... .....++.+|++|.++++++++..
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~-~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA-EKLAEA----LGGALLFRADVTQDEELDALFAGVKE 82 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHH----TTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH-HHhhhc----cCcccccccccCCHHHHHHHHHHHHH
Confidence 37899999998 799999999999999999888875544332 222222 336678999999999998887542
Q ss_pred ---CCcEEEEccccccCC----c----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVG----E----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~----~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
++|++||+||..... . ..+++...+++|+.++..+++++... +-+++|++||.....
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~---------- 152 (256)
T d1ulua_ 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK---------- 152 (256)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS----------
T ss_pred hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC----------
Confidence 699999999864321 1 12234457889999999988876643 124899999987642
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEec
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFG 222 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (347)
+......|+.+|.+.+.+.+.++.++ .++++.++.||.+..+..... .............. ++
T Consensus 153 -~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~--------~~~~~~~~~~~~~~--pl---- 217 (256)
T d1ulua_ 153 -VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI--------PGFTKMYDRVAQTA--PL---- 217 (256)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------CHHHHHHHHHHS--TT----
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccch--------hhhHHHHHHHHhcC--CC----
Confidence 34456789999999999999988875 379999999998876421100 00111222222211 11
Q ss_pred ccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 223 TDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 223 ~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
.-+...+|+|+++.+++... .....|+++.+.+|.++
T Consensus 218 -----------~R~~~pedvA~~v~fL~S~~-s~~itG~~i~VDGG~~~ 254 (256)
T d1ulua_ 218 -----------RRNITQEEVGNLGLFLLSPL-ASGITGEVVYVDAGYHI 254 (256)
T ss_dssp -----------SSCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred -----------CCCcCHHHHHHHHHHHhCch-hCCccCCeEEECcCEeC
Confidence 11457899999999998752 23468899999887543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.7e-21 Score=162.64 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=136.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||++++++|+++|++|++.+|+.++.+...+++... +.++..+.+|++|.+++.++++..
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999999999999999887777777666554 458889999999999998877532
Q ss_pred -CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||...... ..+.++.++++|+.++.++.++ +++.+-++||++||...+ .+..
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~-----------~~~~ 151 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH-----------VSVP 151 (244)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C-----------CCHH
T ss_pred CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc-----------CCCC
Confidence 6999999999765433 2344567899999999988775 445566799999998764 2333
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc-----CCceEEEeecccccC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD-----SEWKIILLRYFNPVG 186 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~lR~~~v~G 186 (347)
....|+.||++.+.+.+.++.+. .|+.++++.||.+--
T Consensus 152 ~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T 194 (244)
T d1yb1a_ 152 FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNT 194 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCC
Confidence 34679999999999999887752 379999999987644
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.1e-21 Score=162.84 Aligned_cols=227 Identities=11% Similarity=0.056 Sum_probs=159.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d~ 81 (347)
|+++||||++.||+++++.|+++|++|++++|++.+.++ +.+ ...+.....|+.+.+..+...+.. ++|+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~----~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~id~ 77 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE----LEK-----YPGIQTRVLDVTKKKQIDQFANEVERLDV 77 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG----GGG-----STTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHh-----ccCCceeeeecccccccccccccccccee
Confidence 789999999999999999999999999999987543322 111 346788899999888777776543 6999
Q ss_pred EEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHH----cCCCeEEEeccccccCCCCCCCCCCCCCCCCCCch
Q 040584 82 VIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAA----HGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPY 153 (347)
Q Consensus 82 vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~----~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y 153 (347)
+||+||...... +.+.+...+++|+.++..+.+++.. .+..++|++||.... ..+......|
T Consensus 78 lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~----------~~~~~~~~~Y 147 (245)
T d2ag5a1 78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS----------VKGVVNRCVY 147 (245)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT----------TBCCTTBHHH
T ss_pred EEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc----------cCCccchhHH
Confidence 999999766543 3345667889999999998776553 355699999986531 0234556789
Q ss_pred hhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCCc
Q 040584 154 GRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDGT 231 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 231 (347)
+.+|.+.+.+++.++.++ .++++.++.||.+-.|........ ..........+... .
T Consensus 148 ~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~----~~~~~~~~~~~~~~-----------------~ 206 (245)
T d2ag5a1 148 STTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQA----RGNPEEARNDFLKR-----------------Q 206 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHH----SSSHHHHHHHHHHT-----------------C
T ss_pred HHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhh----hhhhHHHHHHHHhc-----------------C
Confidence 999999999999998885 379999999998765410000000 00000011111111 0
Q ss_pred eeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 232 VVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 232 ~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
...-+...+|+++++.+++... .....|+++.|.+|.+
T Consensus 207 pl~R~~~pedva~~v~fL~s~~-s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 207 KTGRFATAEEIAMLCVYLASDE-SAYVTGNPVIIDGGWS 244 (245)
T ss_dssp TTSSCEEHHHHHHHHHHHHSGG-GTTCCSCEEEECTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhChh-hCCCcCceEEeCCCcC
Confidence 1112678899999999999752 2356889999987754
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.84 E-value=1.8e-20 Score=160.22 Aligned_cols=221 Identities=15% Similarity=0.162 Sum_probs=156.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR-DKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~--- 77 (347)
+|+|+||||++.||..++++|+++|++|+++.|+.+..+.. .++.... ...++.++.+|++ +.++++++++..
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~-~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-AELKAIN--PKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH-HHHHHHC--TTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH-HHHHhhC--CCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999888776654332 3333322 2457888999997 556676655432
Q ss_pred --CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-------CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-------GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-------~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++|||||.. ..+.++..+++|+.++.++.+++... ..++||++||...+ .+..
T Consensus 82 ~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~-----------~~~~ 146 (254)
T d1sbya1 82 LKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF-----------NAIH 146 (254)
T ss_dssp HSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT-----------SCCT
T ss_pred cCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc-----------cCCC
Confidence 699999999964 34677889999999999998865542 13589999998875 2444
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
....|+.||.+...+.+.++.++ .++++.++.||.+..+-...... .. ...+.+.+...
T Consensus 147 ~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~-~~----~~~~~~~~~~~-------------- 207 (254)
T d1sbya1 147 QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNS-WL----DVEPRVAELLL-------------- 207 (254)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCC-GG----GSCTTHHHHHT--------------
T ss_pred CCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCcccccccc-ch----hHHHHHHhccc--------------
Confidence 56789999999999999888774 47999999999887541000000 00 00011111111
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
.+.....+++|++++.+++. ...|+++.+.+|.
T Consensus 208 ------~~~~~~~e~va~~~~~~~~~----~~tG~vi~vdgG~ 240 (254)
T d1sbya1 208 ------SHPTQTSEQCGQNFVKAIEA----NKNGAIWKLDLGT 240 (254)
T ss_dssp ------TSCCEEHHHHHHHHHHHHHH----CCTTCEEEEETTE
T ss_pred ------cCCCCCHHHHHHHHHHhhhC----CCCCCEEEECCCE
Confidence 11234789999999988887 3477889887764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=2.4e-20 Score=157.61 Aligned_cols=215 Identities=13% Similarity=0.113 Sum_probs=151.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-CCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-KFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-~~d 80 (347)
+|+++||||++.||++++++|+++|++|++.+|+.+.. .+ ...+++.+|+++. ++.+++++ ++|
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l-------~~------~~~~~~~~Dv~~~--~~~~~~~~g~iD 68 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL-------KR------SGHRYVVCDLRKD--LDLLFEKVKEVD 68 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH-------HH------TCSEEEECCTTTC--HHHHHHHSCCCS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-------Hh------cCCcEEEcchHHH--HHHHHHHhCCCc
Confidence 48999999999999999999999999999999874322 11 2456788999863 33344432 699
Q ss_pred EEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCc
Q 040584 81 AVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNP 152 (347)
Q Consensus 81 ~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~ 152 (347)
++|||||...... +.+++...+++|+.++..+.+++ ++.+..++|++||..... +......
T Consensus 69 ~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~-----------~~~~~~~ 137 (234)
T d1o5ia_ 69 ILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS-----------PIENLYT 137 (234)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------CCTTBHH
T ss_pred EEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc-----------ccccccc
Confidence 9999999655433 33455678889999988887764 444566999999987642 4445568
Q ss_pred hhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCCCCC
Q 040584 153 YGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYSTKDG 230 (347)
Q Consensus 153 Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 230 (347)
|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+. ....+.+...+....+. +
T Consensus 138 Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~----------~~~~~~~~~~~~~~~~~-p------------- 193 (234)
T d1o5ia_ 138 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETER----------VKELLSEEKKKQVESQI-P------------- 193 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT----------HHHHSCHHHHHHHHTTS-T-------------
T ss_pred chhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhh----------hhhhcCHHHHHHHHhcC-C-------------
Confidence 9999999999999888875 37899999999876541 00001111111111111 1
Q ss_pred ceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 231 TVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 231 ~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..-+...+|+|+++.+++... .....|+++.+.+|-
T Consensus 194 --l~R~~~pediA~~v~fL~S~~-s~~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 194 --MRRMAKPEEIASVVAFLCSEK-ASYLTGQTIVVDGGL 229 (234)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC
T ss_pred --CCCCcCHHHHHHHHHHHhChh-hcCCcCcEEEECccc
Confidence 112567999999999988652 235688999997774
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.83 E-value=6.7e-20 Score=157.38 Aligned_cols=236 Identities=17% Similarity=0.137 Sum_probs=160.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|++|||||++.||+++++.|+++|++|++..++... .+...+++... +.++..+.+|++|.+++.++++..
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc----CCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999886655443 44445555443 457889999999999988877532
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccc-cCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATA-YGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~-yg~~~~~~~~e~~~~~ 148 (347)
++|++||+||...... ..+.++..+++|+.++..+++++... .-++++.++|... + .+..
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~-----------~~~~ 150 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TGIP 150 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-----------CSCC
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc-----------cCCC
Confidence 6999999999765443 33455678999999999998887754 2236666666443 2 1233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCC--CCCCCCCCCccHHHHHHHHcCCCCceEEeccc
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGK--GEDPRGIPNNLMPFVTQVAVGRRPALTVFGTD 224 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 224 (347)
....|+.+|.+.+.+++.++.++ .++++.++.||.+-.+-.... ..............+.+...... +
T Consensus 151 ~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p------- 222 (259)
T d1ja9a_ 151 NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMN-P------- 222 (259)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTS-T-------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCC-C-------
Confidence 45679999999999999888874 379999999998753200000 00000000111122222221111 1
Q ss_pred CCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 225 YSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 225 ~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..-+...+|+++++.+++.... ....|+++.+.+|.
T Consensus 223 --------l~R~g~p~eVa~~v~fL~S~~a-~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 223 --------LKRIGYPADIGRAVSALCQEES-EWINGQVIKLTGGG 258 (259)
T ss_dssp --------TSSCBCHHHHHHHHHHHHSGGG-TTCCSCEEEESTTC
T ss_pred --------CCCCcCHHHHHHHHHHHhCchh-cCCcCceEEeCCCC
Confidence 1125689999999999997632 34688999987764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=2.6e-19 Score=153.78 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=136.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHh---CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL---GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~---~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 76 (347)
+|.++||||++.||++++++|++ +|+.|++++|+.++.+...+++..... +.++.++.+|++|+++++++++.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~Dvs~~~~v~~l~~~~~ 83 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQP--DLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCT--TSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcC--CceEEEEEccCCCHHHHHHHHHHHH
Confidence 47899999999999999999986 799999999988777766666654322 34678899999999998887632
Q ss_pred -------CCCcEEEEccccccCC---c----cccCcchhhhhhhhHHHHHHHHHHHc----C--CCeEEEeccccccCCC
Q 040584 77 -------TKFDAVIHFAGLKAVG---E----SVQKPLPYFDNNLTGTITLLEVMAAH----G--CKNLVFSSSATAYGWP 136 (347)
Q Consensus 77 -------~~~d~vih~a~~~~~~---~----~~~~~~~~~~~nv~~~~~l~~~~~~~----~--~~~iv~~SS~~~yg~~ 136 (347)
..+|++||+||..... . ..+.+...+++|+.++..+.+++... + .++||++||...+
T Consensus 84 ~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~--- 160 (259)
T d1oaaa_ 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL--- 160 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT---
T ss_pred HhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc---
Confidence 1578999999964321 1 12345568999999999999987653 2 2489999998765
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhcCCceEEEeecccccCC
Q 040584 137 KVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 137 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
.+......|+.||.+.+.+.+.++.+..++++.++.||.+-.+
T Consensus 161 --------~~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 161 --------QPYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp --------SCCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred --------CCCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 2444567899999999999999998888999999999887653
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.83 E-value=2e-19 Score=155.63 Aligned_cols=237 Identities=19% Similarity=0.115 Sum_probs=161.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC---
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT--- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (347)
+|+++||||++.||+++++.|+++|++|++++|+... .+...+.+.+. +.++.++.+|++|++++.++++..
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh----CCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999998876543 33344444443 457889999999999998887643
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
++|++||+++...... ..+.+...+++|+.++..+++++... .-+++++++|..... .+...
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~----------~~~~~ 163 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA----------KAVPK 163 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC----------SSCSS
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc----------ccccc
Confidence 6999999999765443 23445668888999999999887754 234788887765321 13344
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCcc-HHHHHH-HHcCCCCceEEecccC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNL-MPFVTQ-VAVGRRPALTVFGTDY 225 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~ 225 (347)
...|+.+|.+.+.+++.++.++ .++++.++.||.+-.+................ .....+ ...... +
T Consensus 164 ~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P-------- 234 (272)
T d1g0oa_ 164 HAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS-P-------- 234 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC-T--------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccC-C--------
Confidence 5679999999999999888875 47999999999875431000000000000000 011111 111010 0
Q ss_pred CCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 226 STKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 226 ~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
..-+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 235 -------lgR~~~peevA~~v~fL~s~~-s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 235 -------LRRVGLPIDIARVVCFLASND-GGWVTGKVIGIDGGA 270 (272)
T ss_dssp -------TCSCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTC
T ss_pred -------CCCCcCHHHHHHHHHHHhCch-hcCccCceEeECCCC
Confidence 112678999999999999652 234688999998775
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.82 E-value=2.4e-20 Score=159.43 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=152.7
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-----C
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-----K 78 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 78 (347)
+++||||++.||+.++++|+++|++|++.+|+.+..++....... +..+|+.|.+++++++++. +
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~----------~~~~dv~~~~~~~~~~~~~~~~~G~ 71 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET----------YPQLKPMSEQEPAELIEAVTSAYGQ 71 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH----------CTTSEECCCCSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc----------EEEeccCCHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999999999877665543322111 2346776666666555421 6
Q ss_pred CcEEEEcccccc-CCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 79 FDAVIHFAGLKA-VGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 79 ~d~vih~a~~~~-~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
+|++|||||... ..+ +.+++...+++|+.++..+++++ ++.+-++||++||...+. +...
T Consensus 72 iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~-----------~~~~ 140 (252)
T d1zmta1 72 VDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG-----------PWKE 140 (252)
T ss_dssp CCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-----------CCTT
T ss_pred CCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc-----------cccc
Confidence 999999999643 222 23456678889999999887764 444567999999987652 3344
Q ss_pred CCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCCC
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYST 227 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 227 (347)
...|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+.......... ..........+.... ++
T Consensus 141 ~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~--~~~~~e~~~~~~~~~--pl--------- 207 (252)
T d1zmta1 141 LSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEP--WKTNPEHVAHVKKVT--AL--------- 207 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHH--HTTCHHHHHHHHHHS--SS---------
T ss_pred ccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhccc--ccCCHHHHHHHHhcC--CC---------
Confidence 5689999999999999888875 37999999999987642111100000 000011222222111 11
Q ss_pred CCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 228 KDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 228 ~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|-.
T Consensus 208 --~----R~g~pedvA~~v~fL~S~~-s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 208 --Q----RLGTQKELGELVAFLASGS-CDYLTGQVFWLAGGFP 243 (252)
T ss_dssp --S----SCBCHHHHHHHHHHHHTTS-CGGGTTCEEEESTTCC
T ss_pred --C----CCcCHHHHHHHHHHHhCch-hcCCcCCeEEECCCce
Confidence 1 2567999999999999752 2346789999987753
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.82 E-value=1.2e-19 Score=158.96 Aligned_cols=231 Identities=13% Similarity=0.057 Sum_probs=159.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----C
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-----T 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (347)
|+++||||+|.||++++++|+++|++|++++|+..+.....+++.... +..+..+.+|+++.++++++++. .
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~---g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 102 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT---GNKVHAIQCDVRDPDMVQNTVSELIKVAG 102 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc---CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence 899999999999999999999999999999998877666665554432 45778899999999998876643 2
Q ss_pred CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHH----Hc-CCCeEEEeccccccCCCCCCCCCCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMA----AH-GCKNLVFSSSATAYGWPKVVPCTEEFPLQ 148 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~----~~-~~~~iv~~SS~~~yg~~~~~~~~e~~~~~ 148 (347)
++|++||+||........ +.....+.+|..+...+...+. .. ....++.+||..... +..
T Consensus 103 ~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-----------~~~ 171 (294)
T d1w6ua_ 103 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-----------GSG 171 (294)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----------CCT
T ss_pred ccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh-----------ccc
Confidence 799999999976544322 2344567778777776655432 22 234677777765431 233
Q ss_pred CCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecccCC
Q 040584 149 AMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGTDYS 226 (347)
Q Consensus 149 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (347)
...+|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+..... ....-.......... ++
T Consensus 172 ~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~-------~~~~~~~~~~~~~~~--pl-------- 234 (294)
T d1w6ua_ 172 FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSR-------LDPTGTFEKEMIGRI--PC-------- 234 (294)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------------CCTTSHHHHHHHTTC--TT--------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhc-------cCCcHHHHHHHhhcC--CC--------
Confidence 44679999999999999888775 379999999999876531100 000111222222211 11
Q ss_pred CCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 227 TKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 227 ~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|..+.
T Consensus 235 ---~----R~~~pediA~~v~fL~sd~-s~~itG~~i~vDGG~~l~ 272 (294)
T d1w6ua_ 235 ---G----RLGTVEELANLAAFLCSDY-ASWINGAVIKFDGGEEVL 272 (294)
T ss_dssp ---S----SCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTHHHH
T ss_pred ---C----CCCCHHHHHHHHHHHhCch-hcCCCCcEEEECCChhhe
Confidence 1 2567899999999998652 234688999998886433
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=1.2e-19 Score=158.67 Aligned_cols=210 Identities=13% Similarity=0.084 Sum_probs=147.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch---------hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA---------SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
+|+++||||++.||+++++.|+++|+.|++.+|..+. .+...+++.. ....+.+|+.|.++.++
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~~~~ 79 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-------RGGKAVANYDSVEAGEK 79 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-------TTCEEEEECCCGGGHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh-------cccccccccchHHHHHH
Confidence 4899999999999999999999999999998765431 2222222222 23355678887776665
Q ss_pred HHcc----C-CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHHH----HHcCCCeEEEeccccccCCCCCC
Q 040584 73 VFAG----T-KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEVM----AAHGCKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 73 ~~~~----~-~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~~----~~~~~~~iv~~SS~~~yg~~~~~ 139 (347)
+++. + ++|++|||||...... +.++++..+++|+.++..+++++ ++.+-++||++||...+-
T Consensus 80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~----- 154 (302)
T d1gz6a_ 80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY----- 154 (302)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC-----
Confidence 5542 2 6999999999765543 33456678999999999887764 445667999999987641
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA 217 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (347)
+......|+.+|.+.+.+.+.++.+. .++++.++-||.+--+ ....+.
T Consensus 155 ------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~-----------~~~~~~------------- 204 (302)
T d1gz6a_ 155 ------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRM-----------TETVMP------------- 204 (302)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTT-----------TGGGSC-------------
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcc-----------hhhcCc-------------
Confidence 33345789999999999999998875 4789999998754211 000000
Q ss_pred eEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 218 LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 218 ~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
......+..+|+|+++++++.. . ....|+++.+.+|
T Consensus 205 -------------~~~~~~~~PedvA~~v~fL~S~-~-a~itG~~i~vdGG 240 (302)
T d1gz6a_ 205 -------------EDLVEALKPEYVAPLVLWLCHE-S-CEENGGLFEVGAG 240 (302)
T ss_dssp -------------HHHHHHSCGGGTHHHHHHHTST-T-CCCCSCEEEEETT
T ss_pred -------------HhhHhcCCHHHHHHHHHHHcCC-C-cCCCCcEEEeCCC
Confidence 1111234568999999988754 2 2467888888766
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.80 E-value=6.2e-19 Score=151.47 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=131.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
.+++||||+|.||.++++.|+++|+ .|+++.|+....+...+.+.++. ..+.++.++.+|++|.+++.++++..
T Consensus 10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~-~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE-ALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHH-hccccccccccccchHHHHHHhhccccccc
Confidence 5899999999999999999999998 47778886443332222222222 12457899999999999999988653
Q ss_pred CCcEEEEccccccCCccc----cCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCCCCCCCCCCCCCCCCCCch
Q 040584 78 KFDAVIHFAGLKAVGESV----QKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPY 153 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y 153 (347)
.+|.|||+||........ +.....+++|+.++.++.++++..+..+||++||....- +......|
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~-----------g~~~~~~Y 157 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF-----------GAPGLGGY 157 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT-----------CCTTCTTT
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc-----------CCcccHHH
Confidence 599999999976544332 233457788999999999988877778999999987652 33445679
Q ss_pred hhhHHHHHHHHHHHhhhcCCceEEEeecccccCC
Q 040584 154 GRSKLFIEEICRDVHRSDSEWKIILLRYFNPVGA 187 (347)
Q Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~ 187 (347)
+.+|...+.+.+++..+ |++++++.||.+.++
T Consensus 158 aAaka~l~~la~~~~~~--Gi~v~~I~pg~~~~~ 189 (259)
T d2fr1a1 158 APGNAYLDGLAQQRRSD--GLPATAVAWGTWAGS 189 (259)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCCEEEEECCBC--
T ss_pred HHHHHhHHHHHHHHHhC--CCCEEECCCCcccCC
Confidence 99999999999887664 899999999988764
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.80 E-value=6e-19 Score=150.45 Aligned_cols=172 Identities=17% Similarity=0.091 Sum_probs=128.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHh---CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc--
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL---GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG-- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~---~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-- 76 (347)
||+|+||||++.||.+++++|++ +|+.|++..|+.++.+.+.+.... ..++.++.+|++|.++++++++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~i~ 76 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-----HSNIHILEIDLRNFDAYDKLVADIE 76 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-----CTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-----CCcEEEEEEEeccHHHHHHHHhhhH
Confidence 58999999999999999999974 799999999998877654432222 45889999999999988876652
Q ss_pred -----CCCcEEEEccccccCCc-c----ccCcchhhhhhhhHHHHHHHHHHH----c-----------CCCeEEEecccc
Q 040584 77 -----TKFDAVIHFAGLKAVGE-S----VQKPLPYFDNNLTGTITLLEVMAA----H-----------GCKNLVFSSSAT 131 (347)
Q Consensus 77 -----~~~d~vih~a~~~~~~~-~----~~~~~~~~~~nv~~~~~l~~~~~~----~-----------~~~~iv~~SS~~ 131 (347)
.++|++|||||...... . .+.+...+++|+.++..+++++.. . +..++|++||..
T Consensus 77 ~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~ 156 (248)
T d1snya_ 77 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 156 (248)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 26999999999744321 1 223456889999999988776432 1 245899999975
Q ss_pred ccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccC
Q 040584 132 AYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVG 186 (347)
Q Consensus 132 ~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G 186 (347)
..-. ..+......|+.||.+...+.+.++.++ .++.+.++.||.|--
T Consensus 157 g~~~--------~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T 205 (248)
T d1snya_ 157 GSIQ--------GNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKT 205 (248)
T ss_dssp GCST--------TCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCS
T ss_pred cccC--------CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccC
Confidence 3210 0123334579999999999998887664 378999999987654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.4e-18 Score=148.25 Aligned_cols=216 Identities=19% Similarity=0.208 Sum_probs=152.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc-----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----- 76 (347)
+|+++||||++.||.+++++|+++|++|++++|+.+..+...+++ .........|+.+.+..+.....
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-------GNNCVFAPADVTSEKDVQTALALAKGKF 77 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-------CCCccccccccccccccccccccccccc
Confidence 488999999999999999999999999999999988776655544 34677888999988776655432
Q ss_pred CCCcEEEEccccccCCc----------cccCcchhhhhhhhHHHHHHHHHHHc----------CCCeEEEeccccccCCC
Q 040584 77 TKFDAVIHFAGLKAVGE----------SVQKPLPYFDNNLTGTITLLEVMAAH----------GCKNLVFSSSATAYGWP 136 (347)
Q Consensus 77 ~~~d~vih~a~~~~~~~----------~~~~~~~~~~~nv~~~~~l~~~~~~~----------~~~~iv~~SS~~~yg~~ 136 (347)
...|.++++++...... ..+.+...+++|+.++.++.+++... +-++||++||...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~-- 155 (248)
T d2o23a1 78 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE-- 155 (248)
T ss_dssp SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH--
T ss_pred ccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc--
Confidence 25899999887543221 12345568899999999998887542 234799999988752
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHH-HHHHHHcC
Q 040584 137 KVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMP-FVTQVAVG 213 (347)
Q Consensus 137 ~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 213 (347)
+......|+.+|.+.+.+.+.++.++ .++++.++.||.+..+... .+.. ........
T Consensus 156 ---------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~-----------~~~~~~~~~~~~~ 215 (248)
T d2o23a1 156 ---------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT-----------SLPEKVCNFLASQ 215 (248)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC---------------------CHHHHT
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhh-----------cCCHHHHHHHHhc
Confidence 44456789999999999999998885 3689999999987654211 0111 11111111
Q ss_pred CCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc
Q 040584 214 RRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 214 ~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
.++ .+ -+...+|+|+++.+++++ +...|++++|
T Consensus 216 ----~pl--------~~----R~g~peevA~~v~fL~s~---~~itGq~I~v 248 (248)
T d2o23a1 216 ----VPF--------PS----RLGDPAEYAHLVQAIIEN---PFLNGEVIRL 248 (248)
T ss_dssp ----CSS--------SC----SCBCHHHHHHHHHHHHHC---TTCCSCEEEE
T ss_pred ----CCC--------CC----CCcCHHHHHHHHHHHHhC---CCCCceEeEC
Confidence 000 01 155789999999999875 4556777664
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=1.7e-18 Score=146.45 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=142.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-------H
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-------F 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-------~ 74 (347)
+|+|+||||+|.||+++++.|+++|++|+++++...... .....+..|..+.++...+ +
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA--------------SASVIVKMTDSFTEQADQVTAEVGKLL 67 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS--------------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------------cccceeecccCcHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999988655321 2233445566555444332 2
Q ss_pred ccCCCcEEEEccccccCC-c----cccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 75 AGTKFDAVIHFAGLKAVG-E----SVQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~-~----~~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
...++|++|||||..... . ..+.++..+++|+.++.++.+++... +-++||++||...+. +.
T Consensus 68 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~-----------~~ 136 (236)
T d1dhra_ 68 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD-----------GT 136 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------CC
T ss_pred CCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC-----------Cc
Confidence 222589999999953221 1 22345568899999999988877653 235899999987652 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhcC----CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSDS----EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
.....|+.||.+.+.+.+.++.+.. ++.+.++.||.+.-| +.+.... .
T Consensus 137 ~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~------------------~~~~~~~-~--------- 188 (236)
T d1dhra_ 137 PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP------------------MNRKSMP-E--------- 188 (236)
T ss_dssp TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH------------------HHHHHST-T---------
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC------------------cchhhCc-c---------
Confidence 4457899999999999999988753 799999999877643 2222111 1
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNL 265 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv 265 (347)
.....++..+|+++.+.+++.... ....|+.+.|
T Consensus 189 -------~~~~~~~~pe~va~~~~~l~s~~~-~~i~G~~i~v 222 (236)
T d1dhra_ 189 -------ADFSSWTPLEFLVETFHDWITGNK-RPNSGSLIQV 222 (236)
T ss_dssp -------SCGGGSEEHHHHHHHHHHHHTTTT-CCCTTCEEEE
T ss_pred -------chhhcCCCHHHHHHHHHHHhCCCc-cCCCCCeEEE
Confidence 011236778999999999887632 2356666665
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.8e-18 Score=148.18 Aligned_cols=174 Identities=19% Similarity=0.229 Sum_probs=131.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEE---EeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVV---VDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (347)
+|.|+||||++.||+++++.|+++|++|+. ..|.......+.+....+. ..+.++..+.+|++|.+++.++++..
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 80 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALA-CPPGSLETLQLDVRDSKSVAAARERVT 80 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTT-CCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHh-ccCCceEEEeccccchHhhhhhhhhcc
Confidence 356789999999999999999999987544 3444444433333333332 23568899999999999999887653
Q ss_pred --CCcEEEEccccccCCc----cccCcchhhhhhhhHHHHHHHH----HHHcCCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 78 --KFDAVIHFAGLKAVGE----SVQKPLPYFDNNLTGTITLLEV----MAAHGCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 78 --~~d~vih~a~~~~~~~----~~~~~~~~~~~nv~~~~~l~~~----~~~~~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
.+|++||+||...... ..+.+...+++|+.++.+++++ +++.+-++||++||.... .+.
T Consensus 81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~-----------~~~ 149 (285)
T d1jtva_ 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL-----------MGL 149 (285)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT-----------SCC
T ss_pred ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhc-----------CCC
Confidence 6999999999765543 2345566889999999988776 445566799999998764 244
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCC
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGA 187 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 187 (347)
.....|+.||.+.+.+.+.++.+. .|+++.++.||.+--+
T Consensus 150 ~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 150 PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 456789999999999999888774 4799999999987543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.77 E-value=1.7e-18 Score=146.43 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=140.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-------H
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-------F 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-------~ 74 (347)
..||+||||+|.||++++++|+++|++|++++|+..... .....+.+|..+.+..... +
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA--------------DSNILVDGNKNWTEQEQSILEQTASSL 67 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS--------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc--------------cccceeccccCchhHHHHHHHHHHHHh
Confidence 468999999999999999999999999999998765321 1233455666654443322 2
Q ss_pred ccCCCcEEEEccccccCC-cc----ccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCCCCCC
Q 040584 75 AGTKFDAVIHFAGLKAVG-ES----VQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTEEFPL 147 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~-~~----~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e~~~~ 147 (347)
+..++|+||||||..... .. .+.++..+++|+.++..+++++... +-++||++||...+. +.
T Consensus 68 ~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~-----------~~ 136 (235)
T d1ooea_ 68 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG-----------PT 136 (235)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------CC
T ss_pred cCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC-----------Cc
Confidence 223699999999963321 11 2334557899999999888877654 235899999987652 34
Q ss_pred CCCCchhhhHHHHHHHHHHHhhhcC----CceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEecc
Q 040584 148 QAMNPYGRSKLFIEEICRDVHRSDS----EWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVFGT 223 (347)
Q Consensus 148 ~~~~~Y~~sK~~~e~~~~~~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 223 (347)
....+|+.||.+.+.+.+.++.++. ++.+..+.||.+--+ +.+.....
T Consensus 137 ~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~------------------~~~~~~~~---------- 188 (235)
T d1ooea_ 137 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP------------------MNRKWMPN---------- 188 (235)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH------------------HHHHHSTT----------
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc------------------chhhhCcC----------
Confidence 4557899999999999999987753 667888888765432 33332211
Q ss_pred cCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEcc
Q 040584 224 DYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLG 266 (347)
Q Consensus 224 ~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~ 266 (347)
.....++..+|+++.++..+.........|..+.+.
T Consensus 189 -------~~~~~~~~~~~va~~~~~~l~~~~~~~~tG~~i~v~ 224 (235)
T d1ooea_ 189 -------ADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKIT 224 (235)
T ss_dssp -------CCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred -------CccccCCCHHHHHHHHHHHhcCccccCCCceEEEEE
Confidence 111236789999999876665433333566777663
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.6e-17 Score=142.42 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=153.3
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc---
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG--- 76 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--- 76 (347)
+|++|||||+| .||+++++.|+++|++|++..|++...... +++... ......+..|+.+..+....+..
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV-EEFAAQ----LGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH-HHHHHH----TTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHHHhh----cCCcceeecccchHHHHHHHHHHhhh
Confidence 58999999999 788999999999999999999986544433 333222 23566788899988877766542
Q ss_pred --CCCcEEEEccccccCCcc-----c----cCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCCCCCCCCCC
Q 040584 77 --TKFDAVIHFAGLKAVGES-----V----QKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGWPKVVPCTE 143 (347)
Q Consensus 77 --~~~d~vih~a~~~~~~~~-----~----~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~~~~~~~~e 143 (347)
..+|++||+|+....... . +.....+.+|+.+...+.+++... +-+.+|++||....
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~---------- 149 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE---------- 149 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT----------
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc----------
Confidence 168999999986543221 1 112334555677777777666543 22368888887653
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCceEEe
Q 040584 144 EFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPALTVF 221 (347)
Q Consensus 144 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (347)
.+.+....|+.+|.+.+.+++.++.++ .++++.++.||.+..+..... ..-......... +. ++
T Consensus 150 -~~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~--------~~~~~~~~~~~~-~~-pl--- 215 (258)
T d1qsga_ 150 -RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI--------KDFRKMLAHCEA-VT-PI--- 215 (258)
T ss_dssp -SBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS--------TTHHHHHHHHHH-HS-TT---
T ss_pred -cCCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc--------chhhhHHHHHHh-CC-CC---
Confidence 233445789999999999999998886 369999999999876531100 001112222221 10 01
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
+ -+...+|+|+++.+++... .....|+++.+.+|.++
T Consensus 216 --------~----R~~~peeia~~v~fL~s~~-s~~itG~~i~vDGG~~i 252 (258)
T d1qsga_ 216 --------R----RTVTIEDVGNSAAFLCSDL-SAGISGEVVHVDGGFSI 252 (258)
T ss_dssp --------S----SCCCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTGGG
T ss_pred --------C----CCcCHHHHHHHHHHHhCch-hcCccCceEEECcCHHH
Confidence 1 1567899999999998652 23578899999888544
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.75 E-value=7.9e-18 Score=143.59 Aligned_cols=174 Identities=14% Similarity=0.059 Sum_probs=125.1
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT 77 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (347)
|. |+|+||||++.||.+++++|+++|+ .|++..|+.++.+++. + ....++.++.+|++|.++++++++..
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~----~---~~~~~~~~~~~Dvs~~~~v~~~~~~i 73 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----S---IKDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----T---CCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH----H---hhCCceEEEEEecCCHHHHHHHHHHH
Confidence 76 8999999999999999999999995 6788888876654322 2 23468899999999999888776432
Q ss_pred -------CCcEEEEccccccC-Cc----cccCcchhhhhhhhHHHHHHHHHH----Hc-----------CCCeEEEeccc
Q 040584 78 -------KFDAVIHFAGLKAV-GE----SVQKPLPYFDNNLTGTITLLEVMA----AH-----------GCKNLVFSSSA 130 (347)
Q Consensus 78 -------~~d~vih~a~~~~~-~~----~~~~~~~~~~~nv~~~~~l~~~~~----~~-----------~~~~iv~~SS~ 130 (347)
++|++|||||.... .. ..+.+...+++|+.++..+.+++. +. ...+++.+|+.
T Consensus 74 ~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~ 153 (250)
T d1yo6a1 74 GEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSG 153 (250)
T ss_dssp HHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCG
T ss_pred HHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccc
Confidence 48999999996432 21 223355689999999998877643 21 12468888876
Q ss_pred cccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeeccccc
Q 040584 131 TAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPV 185 (347)
Q Consensus 131 ~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~ 185 (347)
..+-.... ...+..+...|+.||.+...+.+.++.++ .++.+.++.||.|-
T Consensus 154 ~~~~~~~~----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~ 206 (250)
T d1yo6a1 154 LGSITDNT----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQ 206 (250)
T ss_dssp GGCSTTCC----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-
T ss_pred cccccCCc----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCC
Confidence 55321100 01123344569999999999999988875 47899999887653
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.75 E-value=6.5e-17 Score=140.55 Aligned_cols=227 Identities=13% Similarity=0.059 Sum_probs=150.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch-hHHHHHHHHHhhccCCCCeE-----------------EEecC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA-SEIAVAKVKELAGYQGNNMT-----------------FHKLD 63 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~D 63 (347)
+..++||||++.||++++++|+++|++|++..|+... .+...+.+.... ..... .+.+|
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d 78 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR---PNSAITVQADLSNVATAPVSGADGSAP 78 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS---TTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhc---CCceEEEEeeccccccccccccccccc
Confidence 4678999999999999999999999999987765543 333444444332 22233 34566
Q ss_pred CCCHHHHHHHHccC-----CCcEEEEccccccCCcccc----Cc--------------chhhhhhhhHHHHHHHHHHHc-
Q 040584 64 LRDKAALEVVFAGT-----KFDAVIHFAGLKAVGESVQ----KP--------------LPYFDNNLTGTITLLEVMAAH- 119 (347)
Q Consensus 64 l~d~~~~~~~~~~~-----~~d~vih~a~~~~~~~~~~----~~--------------~~~~~~nv~~~~~l~~~~~~~- 119 (347)
+++.++++++++.. ++|++|||||........+ .+ ...+.+|+.++..+.+++...
T Consensus 79 v~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 158 (284)
T d1e7wa_ 79 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 158 (284)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchh
Confidence 88888888776432 6999999999765432211 11 125678999988887765431
Q ss_pred ---------CCCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCC
Q 040584 120 ---------GCKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAH 188 (347)
Q Consensus 120 ---------~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~ 188 (347)
+..++|+++|.... .+......|+.+|.+.+.+.+.++.++ .++++.++.||..-..
T Consensus 159 ~~~~~~~~~~~~~ii~~~s~~~~-----------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~- 226 (284)
T d1e7wa_ 159 AGTPAKHRGTNYSIINMVDAMTN-----------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLV- 226 (284)
T ss_dssp HTSCGGGSCSCEEEEEECCTTTT-----------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCG-
T ss_pred hhhHHHhcCCCCccccccccccc-----------CCccceeeeccccccchhhhHHHHHHhCCcccccccccccccccc-
Confidence 23468878776653 244456789999999999999888875 3789999998752211
Q ss_pred CCCCCCCCCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccC
Q 040584 189 PSGKGEDPRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGT 267 (347)
Q Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~ 267 (347)
..+.+ ......... +.. + -+...+|+|+++.+++... .....|+++.+.+
T Consensus 227 ------------~~~~~~~~~~~~~~~-pl~-----------~----R~~~peeiA~~v~fL~S~~-s~~itG~~i~VDG 277 (284)
T d1e7wa_ 227 ------------DDMPPAVWEGHRSKV-PLY-----------Q----RDSSAAEVSDVVIFLCSSK-AKYITGTCVKVDG 277 (284)
T ss_dssp ------------GGSCHHHHHHHHTTC-TTT-----------T----SCBCHHHHHHHHHHHHSGG-GTTCCSCEEEEST
T ss_pred ------------ccCCHHHHHHHHhcC-CCC-----------C----CCCCHHHHHHHHHHHhCch-hcCccCCeEEECc
Confidence 11222 333333221 100 1 1457899999999998652 2346889999988
Q ss_pred CCccc
Q 040584 268 GKGTS 272 (347)
Q Consensus 268 ~~~~s 272 (347)
|.++|
T Consensus 278 G~sl~ 282 (284)
T d1e7wa_ 278 GYSLT 282 (284)
T ss_dssp TGGGC
T ss_pred Chhcc
Confidence 87654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.5e-17 Score=141.00 Aligned_cols=170 Identities=16% Similarity=0.130 Sum_probs=129.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT---- 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---- 77 (347)
+|+++||||++.||+++++.|+++|++|++++|+.++.+...+++... .......+.+|+.+.+......+..
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL---GAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH---TCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh---hcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999877766655554433 2456778889999888777655432
Q ss_pred -CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHH---cCCCeEEEeccccccCCCCCCCCCCCCCCCC
Q 040584 78 -KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAA---HGCKNLVFSSSATAYGWPKVVPCTEEFPLQA 149 (347)
Q Consensus 78 -~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~---~~~~~iv~~SS~~~yg~~~~~~~~e~~~~~~ 149 (347)
.+|+++++||....... .+.....+++|+.++..+.+.+.. .+-+++|++||...+ .+...
T Consensus 91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~-----------~~~p~ 159 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK-----------VAYPM 159 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT-----------SCCTT
T ss_pred CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc-----------CCCCC
Confidence 68999999997554332 233456788999998888776542 123589999998764 24445
Q ss_pred CCchhhhHHHHHHHHHHHhhhc----CCceEEEeeccccc
Q 040584 150 MNPYGRSKLFIEEICRDVHRSD----SEWKIILLRYFNPV 185 (347)
Q Consensus 150 ~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~lR~~~v~ 185 (347)
...|+.||.+.+.+.+.++.++ .++.+..+.||.|-
T Consensus 160 ~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~ 199 (269)
T d1xu9a_ 160 VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLID 199 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBC
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCC
Confidence 6799999999999999888763 35788888987654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.4e-17 Score=144.00 Aligned_cols=181 Identities=18% Similarity=0.095 Sum_probs=132.7
Q ss_pred CceE-EEEcCCCcccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNI-LVIGGVGYIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~v-lItGatG~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+| +||||++.||.+++++|+++ |+.|++.+|+.++.+...+++... +.++.++.+|++|.++++++++..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEEecCCHHHHHHHHHHHHH
Confidence 3555 89999999999999999986 899999999988877777777654 457889999999999988776543
Q ss_pred ---CCcEEEEccccccCCcc----ccCcchhhhhhhhHHHHHHHHHHHc--CCCeEEEeccccccCC-CCCCC-------
Q 040584 78 ---KFDAVIHFAGLKAVGES----VQKPLPYFDNNLTGTITLLEVMAAH--GCKNLVFSSSATAYGW-PKVVP------- 140 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~~----~~~~~~~~~~nv~~~~~l~~~~~~~--~~~~iv~~SS~~~yg~-~~~~~------- 140 (347)
++|++|||||....... .+.++..+++|+.++..+++++... .-+++|++||...... ....+
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~ 157 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 157 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhc
Confidence 69999999997544332 2234568899999999999987653 2248999999754310 00000
Q ss_pred ----------------------CCCCCCCCCCCchhhhHHHHHHHHHHHhhhc------CCceEEEeecccccC
Q 040584 141 ----------------------CTEEFPLQAMNPYGRSKLFIEEICRDVHRSD------SEWKIILLRYFNPVG 186 (347)
Q Consensus 141 ----------------------~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~~~~~~~lR~~~v~G 186 (347)
.....+..+...|+.||.+...+.+.++++. .++.+.++.||.|--
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T 231 (275)
T d1wmaa1 158 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRT 231 (275)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCS
T ss_pred ccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccC
Confidence 0001123355679999999988877655542 378999999987653
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=7.8e-17 Score=136.58 Aligned_cols=213 Identities=18% Similarity=0.158 Sum_probs=148.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc----C
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG----T 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~ 77 (347)
.|+++||||++.||++++++|+++|++|++++|+.+.. +...+.+|+.+......+... .
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~~~ 64 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE----------------DLIYVEGDVTREEDVRRAVARAQEEA 64 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS----------------SSEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc----------------cceEeeccccchhhhHHHHHhhhccc
Confidence 38999999999999999999999999999999876532 556788999987766655432 2
Q ss_pred CCcEEEEccccccCCc--------cccCcchhhhhhhhHHHHHHHHHHHc----------CCCeEEEeccccccCCCCCC
Q 040584 78 KFDAVIHFAGLKAVGE--------SVQKPLPYFDNNLTGTITLLEVMAAH----------GCKNLVFSSSATAYGWPKVV 139 (347)
Q Consensus 78 ~~d~vih~a~~~~~~~--------~~~~~~~~~~~nv~~~~~l~~~~~~~----------~~~~iv~~SS~~~yg~~~~~ 139 (347)
..+.++++++...... ..+.+...+++|+.+...+...+... +..+||++||...+-
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~----- 139 (241)
T d1uaya_ 65 PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE----- 139 (241)
T ss_dssp CEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH-----
T ss_pred cccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc-----
Confidence 4566677666432111 12233457888999888877764432 235899999987652
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHcCCCCc
Q 040584 140 PCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAVGRRPA 217 (347)
Q Consensus 140 ~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (347)
+......|+.+|.+.+.+.+.++.++ .++++.++.||.+-.+. ................ +.
T Consensus 140 ------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~----------~~~~~~~~~~~~~~~~-~~ 202 (241)
T d1uaya_ 140 ------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPL----------LQGLPEKAKASLAAQV-PF 202 (241)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHH----------HHTSCHHHHHHHHTTC-CS
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccc----------cchhhhhHHHHHHhcC-CC
Confidence 34456789999999999999998875 37899999999876531 0011122222222211 10
Q ss_pred eEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 218 LTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 218 ~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
. + -+...+|+|+++.+++.+ +...|+++.+.+|..
T Consensus 203 ~-----------~----R~g~pedvA~~v~fL~s~---~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 203 P-----------P----RLGRPEEYAALVLHILEN---PMLNGEVVRLDGALR 237 (241)
T ss_dssp S-----------C----SCCCHHHHHHHHHHHHHC---TTCCSCEEEESTTCC
T ss_pred C-----------C----CCcCHHHHHHHHHHHHhC---CCCCCCEEEECCccc
Confidence 0 1 145689999999999875 457889999987754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.68 E-value=1e-15 Score=132.16 Aligned_cols=226 Identities=13% Similarity=0.120 Sum_probs=143.2
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|++|||||+| .||.+++++|+++|++|++++|++...+ ..+++... ......+..|+++..+..++++..
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~-~~~~l~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK-RVRPIAQE----LNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH-HHHHHHHH----TTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHhh----CCceeEeeecccchhhHHHHHHHHHH
Confidence 48999999887 7999999999999999999999854333 33333333 345677899999998888776432
Q ss_pred ---CCcEEEEccccccCCccc----cCcchhhhhhhh----HHHHHHHHHHHc-CCC-eEEEeccccccCCCCCCCCCCC
Q 040584 78 ---KFDAVIHFAGLKAVGESV----QKPLPYFDNNLT----GTITLLEVMAAH-GCK-NLVFSSSATAYGWPKVVPCTEE 144 (347)
Q Consensus 78 ---~~d~vih~a~~~~~~~~~----~~~~~~~~~nv~----~~~~l~~~~~~~-~~~-~iv~~SS~~~yg~~~~~~~~e~ 144 (347)
.+|++||++|........ ......+..+.. ....+....... +.. .++.+|+....+
T Consensus 80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~---------- 149 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK---------- 149 (274)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred HcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc----------
Confidence 699999999965432211 111222222222 222222222222 222 455555555432
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHH-HHHcCCCCceEEe
Q 040584 145 FPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVT-QVAVGRRPALTVF 221 (347)
Q Consensus 145 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 221 (347)
+......|+.+|.+.+.+++..+.+. .++++.++.||.+.-+..... . -.+... ...... +
T Consensus 150 -~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~-------~--~~~~~~~~~~~~~--p---- 213 (274)
T d2pd4a1 150 -YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-------A--DFRMILKWNEINA--P---- 213 (274)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-------T--THHHHHHHHHHHS--T----
T ss_pred -ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCcccccc-------C--chHHHHHHHhhhh--h----
Confidence 33445679999999999998887775 368999999998765421100 0 011111 111111 0
Q ss_pred cccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCc
Q 040584 222 GTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKG 270 (347)
Q Consensus 222 g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~ 270 (347)
..-+...+|+|+++.+++... .....|+++.+.+|.+
T Consensus 214 -----------~~r~~~pedIA~~v~fL~S~~-s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 214 -----------LRKNVSLEEVGNAGMYLLSSL-SSGVSGEVHFVDAGYH 250 (274)
T ss_dssp -----------TSSCCCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGG
T ss_pred -----------ccCCcCHHHHHHHHHHHhChh-hCCCcCceEEECCChh
Confidence 112567999999999998762 2346889999988764
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.66 E-value=5.6e-15 Score=126.81 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=142.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCC----HHHHHHHHcc-
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRD----KAALEVVFAG- 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~~~- 76 (347)
.+++||||++.||++++++|+++|++|++++|+.++. +...+++... .......+..|..+ .+.+.++++.
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA---RAGSAVLCKGDLSLSSSLLDCCEDIIDCS 78 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH---STTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhh---cCCceEEEecccccchhHHHHHHHHHHHH
Confidence 4789999999999999999999999999999886643 3334444433 23456666666543 3334333321
Q ss_pred ----CCCcEEEEccccccCCcccc---------------CcchhhhhhhhHHHHHHHHHHHc---------CCCeEEEec
Q 040584 77 ----TKFDAVIHFAGLKAVGESVQ---------------KPLPYFDNNLTGTITLLEVMAAH---------GCKNLVFSS 128 (347)
Q Consensus 77 ----~~~d~vih~a~~~~~~~~~~---------------~~~~~~~~nv~~~~~l~~~~~~~---------~~~~iv~~S 128 (347)
.++|++|||||......... .....+..|+.+........... ....++.+|
T Consensus 79 ~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (266)
T d1mxha_ 79 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC 158 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred HHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhh
Confidence 16999999999754322111 11123344555544444433321 123566666
Q ss_pred cccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHH
Q 040584 129 SATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPF 206 (347)
Q Consensus 129 S~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~ 206 (347)
+.... .+......|+.||.+.+.+.+.++.+. .++++..+.||.+.-+. .. -...
T Consensus 159 ~~~~~-----------~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~---------~~---~~~~ 215 (266)
T d1mxha_ 159 DAMTD-----------LPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP---------AM---PQET 215 (266)
T ss_dssp CGGGG-----------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCS---------SS---CHHH
T ss_pred hcccc-----------ccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccc---------cC---CHHH
Confidence 66543 234456789999999999999888775 37999999999876542 00 1122
Q ss_pred HHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCcc
Q 040584 207 VTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGT 271 (347)
Q Consensus 207 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~ 271 (347)
...+...- ++ + +-+...+|+|+++.+++... .....|+++.+.+|..+
T Consensus 216 ~~~~~~~~--pl-----------~---r~~~~peeva~~v~fL~s~~-s~~itG~~i~vDGG~~l 263 (266)
T d1mxha_ 216 QEEYRRKV--PL-----------G---QSEASAAQIADAIAFLVSKD-AGYITGTTLKVDGGLIL 263 (266)
T ss_dssp HHHHHTTC--TT-----------T---SCCBCHHHHHHHHHHHHSGG-GTTCCSCEEEESTTGGG
T ss_pred HHHHHhcC--CC-----------C---CCCCCHHHHHHHHHHHhCch-hCCccCCeEEECccHhh
Confidence 23332211 11 1 11357899999999999762 23468899999887544
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.62 E-value=6.7e-16 Score=132.86 Aligned_cols=238 Identities=15% Similarity=0.051 Sum_probs=142.0
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccC--
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGT-- 77 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (347)
+|+++||||+| .||.+++++|+++|++|++..|+..+.. +.+.+. .+.+...+.+|+++.++...+++..
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~---~~~~~~---~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI---QRITDR---LPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH---HHHHTT---SSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH---HHHHHH---cCCceeeEeeecccccccccccchhhh
Confidence 48999999765 6999999999999999999988765432 222222 2456778899999987776654321
Q ss_pred ------CCcEEEEccccccCCc-----ccc----CcchhhhhhhhHHHHHHHHHHHcC-CCeEEEeccccccCCCCCCCC
Q 040584 78 ------KFDAVIHFAGLKAVGE-----SVQ----KPLPYFDNNLTGTITLLEVMAAHG-CKNLVFSSSATAYGWPKVVPC 141 (347)
Q Consensus 78 ------~~d~vih~a~~~~~~~-----~~~----~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~~yg~~~~~~~ 141 (347)
.+|+++|+||...... ..+ .....+..|+.........+.... ....+.++|....
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~-------- 151 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-------- 151 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS--------
T ss_pred ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccccccc--------
Confidence 4899999999653221 111 112234445555555555544332 2234444444332
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCC-CCCccHHHHHHHHcCCCCce
Q 040584 142 TEEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRG-IPNNLMPFVTQVAVGRRPAL 218 (347)
Q Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (347)
.+.+....|+.+|.+.+.+++.++.++ .++++.++.||.+-.+....+...... ...............+.+ +
T Consensus 152 ---~~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-l 227 (268)
T d2h7ma1 152 ---RAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAP-I 227 (268)
T ss_dssp ---SCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCT-T
T ss_pred ---ccCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCC-C
Confidence 123345689999999999999888875 369999999997754210000000000 000000111111110000 0
Q ss_pred EEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCCccc
Q 040584 219 TVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGKGTS 272 (347)
Q Consensus 219 ~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~~~s 272 (347)
.+.+...+|+|+++.+++.. ......|+++.|.+|-+.+
T Consensus 228 --------------~rr~~~p~dva~~v~fL~Sd-~a~~iTG~~i~vDGG~~~~ 266 (268)
T d2h7ma1 228 --------------GWNMKDATPVAKTVCALLSD-WLPATTGDIIYADGGAHTQ 266 (268)
T ss_dssp --------------CCCTTCCHHHHHHHHHHHSS-SCTTCCSEEEEESTTGGGC
T ss_pred --------------CCCCCCHHHHHHHHHHHhCc-hhcCccCCEEEECcCcccc
Confidence 12245689999999999854 2334688999998876443
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.55 E-value=1.6e-14 Score=125.96 Aligned_cols=231 Identities=7% Similarity=-0.040 Sum_probs=139.4
Q ss_pred CceEEEEcCCC--cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc-------cCCC---CeEEEecCCC----
Q 040584 2 AKNILVIGGVG--YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-------YQGN---NMTFHKLDLR---- 65 (347)
Q Consensus 2 ~~~vlItGatG--~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~Dl~---- 65 (347)
+|+++||||+| .||++++++|+++|++|++..|++............... .... ++..+..++.
T Consensus 8 gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (297)
T d1d7oa_ 8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPED 87 (297)
T ss_dssp TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSGGG
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcccccc
Confidence 48999999987 899999999999999999988764432221111110000 0000 1112221221
Q ss_pred --------------CHHHHHHHHc----cC-CCcEEEEccccccC--Cc----cccCcchhhhhhhhHHHHHHHHHHHcC
Q 040584 66 --------------DKAALEVVFA----GT-KFDAVIHFAGLKAV--GE----SVQKPLPYFDNNLTGTITLLEVMAAHG 120 (347)
Q Consensus 66 --------------d~~~~~~~~~----~~-~~d~vih~a~~~~~--~~----~~~~~~~~~~~nv~~~~~l~~~~~~~~ 120 (347)
+....+++++ .+ ++|++|||||.... .+ +.+.+...+++|+.+...+++++....
T Consensus 88 ~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~ 167 (297)
T d1d7oa_ 88 VPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIM 167 (297)
T ss_dssp SCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHHHHh
Confidence 1111222222 11 69999999996431 11 233456788899999999998876542
Q ss_pred --CCeEEEeccccccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhc---CCceEEEeecccccCCCCCCCCCC
Q 040584 121 --CKNLVFSSSATAYGWPKVVPCTEEFPLQAMNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPVGAHPSGKGED 195 (347)
Q Consensus 121 --~~~iv~~SS~~~yg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~~~~~~~~~ 195 (347)
-++++.+++..... ........|+.+|...+.+++.++.++ .++++.++.||.+..+...
T Consensus 168 ~~~g~~~~~~~~~~~~----------~~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~----- 232 (297)
T d1d7oa_ 168 NPGGASISLTYIASER----------IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAK----- 232 (297)
T ss_dssp EEEEEEEEEECGGGTS----------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSS-----
T ss_pred hcCCcceeeeehhhcc----------cccccccceecccccccccccccchhccccceEEecccccccccchhhh-----
Confidence 22455566554321 122345679999999998887665553 2799999999998765311
Q ss_pred CCCCCCccHH-HHHHHHcCCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCCC
Q 040584 196 PRGIPNNLMP-FVTQVAVGRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTGK 269 (347)
Q Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~~ 269 (347)
. ....+ +........ ++ + -+...+|+|+++.+++... .....|+++.+.+|.
T Consensus 233 --~--~~~~~~~~~~~~~~~--Pl-----------g----R~~~peevA~~v~fL~S~~-a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 233 --A--IGFIDTMIEYSYNNA--PI-----------Q----KTLTADEVGNAAAFLVSPL-ASAITGATIYVDNGL 285 (297)
T ss_dssp --C--CSHHHHHHHHHHHHS--SS-----------C----CCBCHHHHHHHHHHHTSGG-GTTCCSCEEEESTTG
T ss_pred --h--ccCCHHHHHHHHhCC--CC-----------C----CCCCHHHHHHHHHHHhCch-hcCCcCceEEECcCH
Confidence 0 01122 222222211 11 1 2567999999999998652 234688999998774
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.54 E-value=9.7e-14 Score=118.31 Aligned_cols=218 Identities=15% Similarity=0.039 Sum_probs=129.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc----c-
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA----G- 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~- 76 (347)
||.|+||||++.||++++++|+++|++|++++|+... ...|+.+......... +
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~---------------------~~~d~~~~~~~~~~~~~~~~~~ 59 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE---------------------VIADLSTAEGRKQAIADVLAKC 59 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS---------------------EECCTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH---------------------HHHHhcCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999886432 2357776665544322 1
Q ss_pred -CCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHH----HcCCCeEEEeccccccCCC-CCCCCC--------
Q 040584 77 -TKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMA----AHGCKNLVFSSSATAYGWP-KVVPCT-------- 142 (347)
Q Consensus 77 -~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~~yg~~-~~~~~~-------- 142 (347)
..+|+++++||.... .+.......+|..+...+.+... +........+++....... ...+..
T Consensus 60 ~~~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 60 SKGMDGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp TTCCSEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred CCCCcEEEEcCCCCCc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcE
Confidence 159999999986432 23345566677777776655433 2334455555554332110 000000
Q ss_pred --------CCCCCCCCCchhhhHHHHHHHHHHHhhhc--CCceEEEeecccccCCCCCCCCCCCCCCCCccHHHHHHHHc
Q 040584 143 --------EEFPLQAMNPYGRSKLFIEEICRDVHRSD--SEWKIILLRYFNPVGAHPSGKGEDPRGIPNNLMPFVTQVAV 212 (347)
Q Consensus 143 --------e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (347)
.........+|+.+|.+.+.+.+.++.++ .++++.++.||.+-.|........ .........
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~--------~~~~~~~~~ 208 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQD--------PRYGESIAK 208 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCC--------HHHHHHHHh
Confidence 00011122469999999999999887775 479999999998765421000000 000111111
Q ss_pred CCCCceEEecccCCCCCCceeeeeeeHHHHHHHHHHHHHhcCCCCCCCeeEEccCC
Q 040584 213 GRRPALTVFGTDYSTKDGTVVRDYIHVVDLADGHIAALRKLDDPKVGCEVYNLGTG 268 (347)
Q Consensus 213 ~~~~~~~~~g~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~~~~nv~~~ 268 (347)
.. ....-+...+|+|+++.+++... .....|+++.+.+|
T Consensus 209 ~~----------------~PlgR~g~p~eva~~v~fL~S~~-s~~itG~~i~vDGG 247 (257)
T d1fjha_ 209 FV----------------PPMGRRAEPSEMASVIAFLMSPA-ASYVHGAQIVIDGG 247 (257)
T ss_dssp CC----------------CSTTSCCCTHHHHHHHHHHTSGG-GTTCCSCEEEESTT
T ss_pred cC----------------CCCCCCcCHHHHHHHHHHHhCch-hCCccCceEEeCCC
Confidence 00 00112567899999999998652 23578899999776
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.53 E-value=3.3e-14 Score=125.62 Aligned_cols=173 Identities=10% Similarity=-0.053 Sum_probs=114.5
Q ss_pred CceEEEEc--CCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc-----c---CCCCeEEEec---------
Q 040584 2 AKNILVIG--GVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG-----Y---QGNNMTFHKL--------- 62 (347)
Q Consensus 2 ~~~vlItG--atG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~--------- 62 (347)
.|.+|||| ++..||..+++.|+++|++|++..+................. . .........+
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 47899999 557999999999999999999988765543322221111000 0 0011122222
Q ss_pred -----------CCCCHHHHHHHHcc-----CCCcEEEEccccccCC--c----cccCcchhhhhhhhHHHHHHHHHHHc-
Q 040584 63 -----------DLRDKAALEVVFAG-----TKFDAVIHFAGLKAVG--E----SVQKPLPYFDNNLTGTITLLEVMAAH- 119 (347)
Q Consensus 63 -----------Dl~d~~~~~~~~~~-----~~~d~vih~a~~~~~~--~----~~~~~~~~~~~nv~~~~~l~~~~~~~- 119 (347)
|+.+.++++++++. -++|++||+||..... + ..+++...+++|+.++..+++++...
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 34444444443331 1699999999964321 1 23456678889999998888887654
Q ss_pred -CCCeEEEeccccccCCCCCCCCCCCCCCC-CCCchhhhHHHHHHHHHHHhhhc---CCceEEEeeccccc
Q 040584 120 -GCKNLVFSSSATAYGWPKVVPCTEEFPLQ-AMNPYGRSKLFIEEICRDVHRSD---SEWKIILLRYFNPV 185 (347)
Q Consensus 120 -~~~~iv~~SS~~~yg~~~~~~~~e~~~~~-~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lR~~~v~ 185 (347)
.-++||.+||..... +.+ ....|+.+|.+.+.+++.++.++ .++++.++.||.+-
T Consensus 162 ~~~GsIv~iss~~~~~-----------~~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~ 221 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQK-----------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLK 221 (329)
T ss_dssp EEEEEEEEEECGGGTS-----------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred ccccccccceeehhcc-----------cccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCccc
Confidence 235899999876642 221 24579999999999999888775 28999999999774
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.37 E-value=4.2e-13 Score=108.92 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=78.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|+||||+|.||+.+++.|+++|++|++++|+.++.....+.+... .++....+|++|.+++++++. ++|+
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~--~iDi 95 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR-----FKVNVTAAETADDASRAEAVK--GAHF 95 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-----HTCCCEEEECCSHHHHHHHTT--TCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc-----cchhhhhhhcccHHHHHHHhc--CcCe
Confidence 489999999999999999999999999999999988777666666543 245678899999999999998 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHH
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGT 109 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~ 109 (347)
|||+||........+.+...+++|+.+.
T Consensus 96 lin~Ag~g~~~~~~e~~~~~~~~nv~~~ 123 (191)
T d1luaa1 96 VFTAGAIGLELLPQAAWQNESSIEIVAD 123 (191)
T ss_dssp EEECCCTTCCCBCHHHHHTCTTCCEEEE
T ss_pred eeecCccccccCCHHHHHhhhcceeehh
Confidence 9999996543233333334444444333
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.61 E-value=2.4e-07 Score=69.36 Aligned_cols=96 Identities=20% Similarity=0.127 Sum_probs=69.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|+|+|+ |.+|+.+++.|.+.|++|++++++++......+. .+...+.+|.+|.+.+.++--. .+|.+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~-~a~~v 69 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIE-DADMY 69 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTT-TCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChh-hhhhh
Confidence 79999996 9999999999999999999998875544332221 2567899999999999988433 58888
Q ss_pred EEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEE
Q 040584 83 IHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVF 126 (347)
Q Consensus 83 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~ 126 (347)
+-+..- .+.|+. +...+++.+.+++|.
T Consensus 70 v~~t~~-------------d~~N~~----~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 70 IAVTGK-------------EEVNLM----SSLLAKSYGINKTIA 96 (132)
T ss_dssp EECCSC-------------HHHHHH----HHHHHHHTTCCCEEE
T ss_pred cccCCc-------------HHHHHH----HHHHHHHcCCceEEE
Confidence 876421 133442 334556677777764
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.58 E-value=4.1e-07 Score=68.94 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=77.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchh--HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNAS--EIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
|||.|+||+|.+|+.++..|+.+| .++.++++..... +.....+.+..............--.|. +.++ +
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~--~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIID--E 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGT--T
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhc--c
Confidence 689999999999999999999998 4889998765332 2222233333222222333322111122 2344 6
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEe
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFS 127 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~ 127 (347)
+|+||-+||.... ..+...+.++.|+.-.+.+++...+.+.+.++.+
T Consensus 75 aDvVVitAG~~~~--~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 75 SDVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp CSEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ceEEEEecccccC--CCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 9999999996432 2234567889999999999999988865555544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.42 E-value=1.4e-06 Score=65.84 Aligned_cols=114 Identities=21% Similarity=0.160 Sum_probs=76.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
||.|+||+|.+|++++..|..+|. ++.+++....+.. ...+.+. . .......-+ ...+..+.++ ++|+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~--a~Dl~~~----~-~~~~~~~~~-~~~~~~~~~~--~aDi 71 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV--AADLSHI----E-TRATVKGYL-GPEQLPDCLK--GCDV 71 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH--HHHHTTS----S-SSCEEEEEE-SGGGHHHHHT--TCSE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh--hHHHhhh----h-hhcCCCeEE-cCCChHHHhC--CCCE
Confidence 799999999999999999999884 6888886543221 1111111 0 111111111 2445566677 6999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
||..||.... ..+...+.++.|+...+.+++.+++++.+ .++.+|.
T Consensus 72 vVitag~~~~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN 118 (144)
T d1mlda1 72 VVIPAGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (144)
T ss_dssp EEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEECCCcCCC--CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9999996432 23355778899999999999999998755 4554443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.35 E-value=1.8e-06 Score=65.38 Aligned_cols=115 Identities=14% Similarity=0.239 Sum_probs=73.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+|||.|+|+ |++|+.++..|+.+| .++.++++.....+.....+.+.... ........+|. + .++ ++
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~-~~~~~~~~~d~---~----~~~--~a 73 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAF-TAPKKIYSGEY---S----DCK--DA 73 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGG-SCCCEEEECCG---G----GGT--TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccc-cCCceEeeccH---H----Hhc--cc
Confidence 379999995 999999999999987 68999998765443333333332221 22334455553 2 234 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
|+||.+||..... .....+.+..|+...+.+++.+++.+.+-++.+-|
T Consensus 74 divvitag~~~~~--g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 74 DLVVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cEEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 9999999965422 23456677889999999999999887654544443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.26 E-value=6.1e-06 Score=62.61 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=77.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+||.|+|| |.+|+.++..|+.+|. ++.++++.+...+.....+.+........+.....| . +.++ ++|
T Consensus 7 ~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d---~----~~l~--daD 76 (148)
T d1ldna1 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD---Y----DDCR--DAD 76 (148)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC---G----GGTT--TCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECC---H----HHhc--cce
Confidence 58999996 9999999999999874 799998876654443333443322222334444444 2 2244 589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||.+||.... ..+...+.+..|+.-.+.+++..++++.+ .+|.+|
T Consensus 77 vvvitag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 77 LVVICAGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp EEEECCSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred eEEEecccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 99999996542 23445677888999999999998887644 455544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.25 E-value=5e-06 Score=65.18 Aligned_cols=74 Identities=30% Similarity=0.345 Sum_probs=56.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.|+|+|.|| |++|+++++.|.++||+|++++|+..+.....+. .........+..+.......+. ..|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~--------~~~~~~~~~~~~~~~~~~~~i~--~~~~ 70 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG--------VQHSTPISLDVNDDAALDAEVA--KHDL 70 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT--------CTTEEEEECCTTCHHHHHHHHT--TSSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc--------ccccccccccccchhhhHhhhh--ccce
Confidence 589999996 9999999999999999999999987766554432 2244455566777777777777 4787
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
++.+.
T Consensus 71 ~i~~~ 75 (182)
T d1e5qa1 71 VISLI 75 (182)
T ss_dssp EEECS
T ss_pred eEeec
Confidence 77654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=1.9e-05 Score=59.51 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=73.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-C--CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-G--GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|||.|+|++|.+|++++..|.. . +.++.+++..+. .....-.+.+.. .......+ ..-.+ +. .++ +.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~Dl~h~~--~~~~~~~~-~~~~~---~~-~~~--~a 70 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIP--TAVKIKGF-SGEDA---TP-ALE--GA 70 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHHHHTSC--SSCEEEEE-CSSCC---HH-HHT--TC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHHHHCCc--cccCCcEE-EcCCC---cc-ccC--CC
Confidence 7899999999999999998854 3 478989887543 222222222211 11111121 22222 22 455 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||.+||.... ..+...+.++.|..-.+.+.+.+.+...+ .+|.+|.
T Consensus 71 DvvvitaG~~~k--~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 71 DVVLISAGVRRK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp SEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEECCCccCC--CCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 999999997532 23355678899999999999999988654 4555553
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.18 E-value=1.7e-05 Score=60.58 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=77.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++||.|+|+ |.+|+.++..|..+|. ++.++++..+........+.+..............| .++ ++ +.
T Consensus 20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d---~~~----~~--~a 89 (160)
T d1i0za1 20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD---YSV----TA--NS 89 (160)
T ss_dssp SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS---GGG----GT--TC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc---hhh----cc--cc
Confidence 479999995 9999999999999985 888998765554433333333221112222222333 222 34 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
|+||..||.... ..+...+.++.|+.-.+.+++..++.+.+ -+|.+|.
T Consensus 90 diVVitAg~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 90 KIVVVTAGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp SEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cEEEEecCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999999997542 23445678888999999999999988654 4555543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.15 E-value=3.5e-05 Score=58.66 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+||.|+|+ |.+|+.++..|+..+. ++.+++.++.........+.+............. ....++.++ +.|+
T Consensus 8 ~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~--~adi 79 (154)
T d1pzga1 8 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-----EYSYEAALT--GADC 79 (154)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-----ECSHHHHHT--TCSE
T ss_pred CcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec-----cCchhhhhc--CCCe
Confidence 68999997 9999999998888874 8888887776654443333332211111111211 112345566 6899
Q ss_pred EEEccccccCCc---cccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 82 VIHFAGLKAVGE---SVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~---~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
||-+||...... ......+.+..|+...+.+++.+.+.+.+-++.+-|
T Consensus 80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 999999654321 122456778889999999999999887654444443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=2.1e-05 Score=60.09 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=71.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-----eE--EEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-----KT--VVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-----~v--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
+||.|+||+|++|++++..|+..+. .+ .++. .....+........+..........+... ....+.++
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 79 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLE-IPQAMKALEGVVMELEDCAFPLLAGLEAT----DDPKVAFK 79 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEEC-CGGGHHHHHHHHHHHHTTTCTTEEEEEEE----SCHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhc-cccchhhHcCchhhhhccccccccccccC----Cchhhhcc
Confidence 5899999999999999999998753 12 2222 22222211111112221122333333332 12345566
Q ss_pred cCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC--CeEEEecc
Q 040584 76 GTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC--KNLVFSSS 129 (347)
Q Consensus 76 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~--~~iv~~SS 129 (347)
+.|+||-+||.... ......+.+..|+.-.+.+.+.+.+... ..++.+|.
T Consensus 80 --~advViitaG~~~~--pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 80 --DADYALLVGAAPRK--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp --TCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --cccEEEeecCcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 69999999997542 2334567888899999999999888532 24555553
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.10 E-value=1.8e-05 Score=59.64 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=74.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.|||.|+|+ |.+|+.++..|+.+| .++.++++...+.+.....+.+..............| .++ ++ ++
T Consensus 1 ~kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~~----l~--~a 70 (146)
T d1hyha1 1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WAA----LA--DA 70 (146)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GGG----GT--TC
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HHH----hc--cc
Confidence 379999995 999999999999887 4888888776554433333333322222233343433 322 34 68
Q ss_pred cEEEEccccccCCc--cccCcchhhhhhhhHHHHHHHHHHHcCCCe-EEEec
Q 040584 80 DAVIHFAGLKAVGE--SVQKPLPYFDNNLTGTITLLEVMAAHGCKN-LVFSS 128 (347)
Q Consensus 80 d~vih~a~~~~~~~--~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~-iv~~S 128 (347)
|+||-+||...... ......+..+.|+...+.+.+..++.+..- +|.+|
T Consensus 71 diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 99999999654211 112345667889999999999998886543 44443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.09 E-value=2.6e-05 Score=58.67 Aligned_cols=115 Identities=20% Similarity=0.142 Sum_probs=75.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|| |.+|+.++..|+..| .++.+++..+.........+.+..........+... .|.+ .++ ++|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~----~~~--dad 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYA----DTA--NSD 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGG----GGT--TCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHH----Hhc--CCe
Confidence 68999996 999999999999997 589999988776543322222211111223333322 2222 244 689
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||-+||.... ......+.++.|+.-.+.+++.+++...+ .++.+|
T Consensus 72 vvvitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 72 IVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEEEecCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 99999996432 22334567888999999999999887644 344443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.04 E-value=1.1e-05 Score=60.12 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=55.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHH-HccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVV-FAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~~~d~ 81 (347)
|+++|+| .|.+|+++++.|.+.|++|++++.++...+... ......+.+|.++++.+.++ ++ ++|.
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----------~~~~~~~~gd~~~~~~l~~a~i~--~a~~ 67 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----------SYATHAVIANATEENELLSLGIR--NFEY 67 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----------TTCSEEEECCTTCTTHHHHHTGG--GCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----------HhCCcceeeecccchhhhccCCc--cccE
Confidence 5788998 599999999999999999999987655433221 23456788999999999887 55 5888
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
||-+.
T Consensus 68 vi~~~ 72 (134)
T d2hmva1 68 VIVAI 72 (134)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 87765
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.04 E-value=2.3e-06 Score=68.33 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=41.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKEL 49 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~ 49 (347)
|||.|+||+|.+|++|++.|++.||+|.+.+|++++.+...+++...
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999887777766666544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.03 E-value=3.8e-05 Score=57.61 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=75.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.||.|+|+ |.+|++++..|+.+|. ++.++++.+...+.....+.+...... .......+ +.+ .++ +.|
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~i~~~~--~~~----~~~--daD 71 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYP-TVSIDGSD--DPE----ICR--DAD 71 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGST-TCEEEEES--CGG----GGT--TCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCC-CceeecCC--CHH----Hhh--CCc
Confidence 47999996 9999999999999984 899998776554333333333222112 23333221 222 244 589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+||-+||.... ..+...+.+..|+.-.+.+++.+++.+.+ .++.+|
T Consensus 72 vVVitaG~~~~--~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 72 MVVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp EEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEEecccccC--CCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 99999997542 22344578888999999999999888654 344444
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.03 E-value=2.6e-05 Score=58.48 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=74.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|+ |.+|+.++..|+.+| .++.++++.+.......-.+.+.............. .|.+ .++ +.|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~~----~~~--~ad 71 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----LLK--GSE 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGG----GGT--TCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCHH----Hhc--ccc
Confidence 78999996 999999999999887 478899877655443333333322111222233322 1222 344 589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
+||-.||.... ......+....|+.-...+.+.+++.+..-++.+-|
T Consensus 72 iVvitag~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp EEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred EEEEeccccCC--CCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 99999996432 223456778889999999999998876544444433
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.01 E-value=3.2e-05 Score=57.86 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=74.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCch--hHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNA--SEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
||.|+||+|.+|+.++..|+.++. ++.+++..... .....-.+.+... ..........| .++ ++ ++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~-~~~~~~i~~~~---~~~----~~--~a 71 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGG---YED----TA--GS 71 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECC---GGG----GT--TC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc-ccCCceEeeCC---HHH----hh--hc
Confidence 799999999999999999999984 78888753322 2111222322211 12344444444 222 33 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
|+||-.||.... ..+...+.++.|+.-.+.+.+..++.+.+ .++.+|
T Consensus 72 DiVvitaG~~~~--~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 72 DVVVITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred CEEEEecccccc--cCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 999999996432 22455678899999999999999988654 444444
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.98 E-value=2e-05 Score=59.12 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=71.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.+||.|+|+ |.+|+.++..|+.++. ++.++++.....+.....+.+... .........+ +. +.++ ++
T Consensus 1 r~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~-~~~~~~~~~~---~~----~~~~--~a 69 (142)
T d1y6ja1 1 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLYAG---DY----SDVK--DC 69 (142)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC-----CG----GGGT--TC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcc-cCCCeeEeeC---cH----HHhC--CC
Confidence 368999996 9999999999999974 899999877654433333333211 1122322222 22 2344 68
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
|+||-+||.... ..+...+.+..|+.-.+.+++.+++.+.+ .+|.+|
T Consensus 70 divvitag~~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 70 DVIVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred ceEEEecccccC--cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 999999996542 23455678888999999999999988654 344444
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=1e-05 Score=60.96 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=27.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC----CeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG----YKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g----~~v~~~~r~~~ 37 (347)
|++|.|.||||++|+.+++.|+++. .+++++.++..
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s 40 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL 40 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence 4689999999999999999888763 35566655443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.92 E-value=1.2e-05 Score=63.36 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=67.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+.+|+|+||+|.+|...++.....|++|+++.+++++.+ .++.+ +....+..-|-...+...+.....++|+
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~----~~~~~----Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA----YLKQI----GFDAAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH----HHHHT----TCSEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHH----HHHhh----hhhhhcccccccHHHHHHHHhhcCCCce
Confidence 368999999999999999999999999999987654432 22222 1122233333333444455555557999
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
||++.|... ....++.++.. .+++.++....|+
T Consensus 102 v~D~vG~~~------------------~~~~~~~l~~~--G~~v~~G~~~~~~ 134 (182)
T d1v3va2 102 YFDNVGGEF------------------LNTVLSQMKDF--GKIAICGAISVYN 134 (182)
T ss_dssp EEESSCHHH------------------HHHHGGGEEEE--EEEEECCCGGGTT
T ss_pred eEEecCchh------------------hhhhhhhccCC--CeEEeecceeecc
Confidence 999987310 11233333333 3788888776664
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.92 E-value=6.1e-05 Score=56.30 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=74.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
|||.|+|+ |.+|+.++..|+.++ .++.++++.+.........+.+-.. ..........| .+ .++ ++|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~-~~~~~~~~~~~---~~----~~~--~ad 69 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYAGD---YA----DLK--GSD 69 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEECC---GG----GGT--TCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc-ccccccccCCc---HH----Hhc--CCC
Confidence 78999996 999999999998887 5888988776554432222222211 12234444433 22 244 689
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEe
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFS 127 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~ 127 (347)
+||-+||.... ......+.+..|+.-.+.+++...+.+..-++.+
T Consensus 70 ivvitag~~~~--~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aiviv 114 (140)
T d1a5za1 70 VVIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114 (140)
T ss_dssp EEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEEecccccC--CCcchhhhhccccchHHHHHHHHHhcCCCcEEEE
Confidence 99999997542 2233456778899999999999988865444444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.91 E-value=4.1e-05 Score=57.46 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=70.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEE-ecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH-KLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~ 79 (347)
.+||.|+|+ |.+|+.++..|+.++ .++.+++..+.........+.+............ ..| .++ +. +.
T Consensus 1 r~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d---~~~----~~--~a 70 (142)
T d1uxja1 1 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN---YAD----TA--NS 70 (142)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC---GGG----GT--TC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCc---HHH----hc--CC
Confidence 378999996 999999999998887 4888888777655443333322111111122222 222 221 33 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEec
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSS 128 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S 128 (347)
|+||-+||.... ......+.++.|+.-.+.+++...+.+.+-++.+-
T Consensus 71 dvvvitag~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivv 117 (142)
T d1uxja1 71 DVIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 117 (142)
T ss_dssp SEEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEEC
T ss_pred CEEEEeeeccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEe
Confidence 999999996542 22334567788999999999999887654444443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=4.5e-05 Score=58.20 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=74.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
.||.|+|+ |.+|+.++..|..+|. ++.++++...........+.+.....+........| .+ .+. +.|
T Consensus 20 ~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~~----~~~--~ad 89 (159)
T d2ldxa1 20 CKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---YN----VSA--NSK 89 (159)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---GG----GGT--TEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---hh----hhc--ccc
Confidence 48999995 9999999999999974 899998776554433333333221112122222233 22 233 589
Q ss_pred EEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCC-eEEEecc
Q 040584 81 AVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCK-NLVFSSS 129 (347)
Q Consensus 81 ~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS 129 (347)
+||..||..... .+...+.++.|+...+.++...++.+.+ .++.+|.
T Consensus 90 ivvitag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 90 LVIITAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp EEEECCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred EEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 999999975432 2445567888999999999888877654 4554443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=9.5e-06 Score=63.45 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=50.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~ 79 (347)
.+|||+||+|.+|...++.+...|++|+++.+++.+.+ .++++ +...+ .|.++.+ .+.+.....++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~----~~~~~------Ga~~v-i~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK----IVLQN------GAHEV-FNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH----HHHHT------TCSEE-EETTSTTHHHHHHHHHCTTCE
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccc----ccccc------Ccccc-cccccccHHHHhhhhhccCCc
Confidence 58999999999999999999999999999987644332 22232 12111 2444433 33334444479
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|+||.+.|
T Consensus 99 d~v~d~~g 106 (174)
T d1yb5a2 99 DIIIEMLA 106 (174)
T ss_dssp EEEEESCH
T ss_pred eEEeeccc
Confidence 99999986
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.87 E-value=0.00014 Score=56.32 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=71.2
Q ss_pred eEEEEcCCCcccHHHHHHHHhCC-----C--eEEEEeCCCchhHHHHHHHH-HhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGG-----Y--KTVVVDNLDNASEIAVAKVK-ELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g-----~--~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
||.|+||+|.||++++..|++.+ . ++..++..... ...+.+. ++.....+....+.. ..+..+.++
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~--~~l~g~~mdl~d~a~~~~~~~~~----~~~~~~~~~ 99 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSF--QALEGVAMELEDSLYPLLREVSI----GIDPYEVFE 99 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHTTTCTTEEEEEE----ESCHHHHTT
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcccc--chhcchhhhhcccccccccCccc----cccchhhcc
Confidence 79999999999999999998753 2 33444433322 2122111 111111222322221 112345666
Q ss_pred cCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC--CeEEEecc
Q 040584 76 GTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC--KNLVFSSS 129 (347)
Q Consensus 76 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~--~~iv~~SS 129 (347)
+.|+||-.||... .......+.++.|+.-.+.+.+++.++.. .+++.+|.
T Consensus 100 --~aDvVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 100 --DVDWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp --TCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --CCceEEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 6999999999753 23345567888999999999999988632 25665653
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.83 E-value=0.00018 Score=54.20 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=75.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
++||.|+|+ |.+|+.++..|..++ .++.++++.+...+.....+.+..............+ +. +.++ +.|
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~--~ad 73 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLA--GAD 73 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGT--TCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccC--CCc
Confidence 368999995 999999999888877 4788888877665444333333211112222233222 22 2234 589
Q ss_pred EEEEccccccCC-cc--ccCcchhhhhhhhHHHHHHHHHHHcCCCe-EEEec
Q 040584 81 AVIHFAGLKAVG-ES--VQKPLPYFDNNLTGTITLLEVMAAHGCKN-LVFSS 128 (347)
Q Consensus 81 ~vih~a~~~~~~-~~--~~~~~~~~~~nv~~~~~l~~~~~~~~~~~-iv~~S 128 (347)
+||-+||..... .+ .....+.+..|+...+.+++.+++...+- ++.+|
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999999965432 11 12345678889999999999999886554 44444
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.75 E-value=0.00013 Score=55.19 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=35.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
+++|.|+||.|.+|+.+++.|.++||+|.+.+|......
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~ 47 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA 47 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence 579999999999999999999999999999999876554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.66 E-value=0.00027 Score=53.64 Aligned_cols=116 Identities=14% Similarity=0.065 Sum_probs=69.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-----C--eEEEEeCCCchhHHHHHHHH-HhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-----Y--KTVVVDNLDNASEIAVAKVK-ELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-----~--~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
+||.|+||+|.+|++++..|++.+ . ++..++.. ......+.+. .+..........+..- ....+.+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 77 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDCALPLLKDVIAT----DKEEIAF 77 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG--GGHHHHHHHHHHHHHTCCTTEEEEEEE----SCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc--cchhhhhhhhhhhcccccccccccccC----ccccccc
Confidence 689999999999999999998754 2 23444433 2222222221 1111111222222221 1134556
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHc-CCC-eEEEec
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAH-GCK-NLVFSS 128 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~-~iv~~S 128 (347)
+ +.|+||-+||.... ..+...+.++.|+.-.+.+.+...+. +-. .+|.+|
T Consensus 78 ~--~~dvVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 78 K--DLDVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp T--TCSEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred C--CceEEEEecccCCC--CCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 6 69999999997542 23344567888999999999888765 432 455555
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00026 Score=55.36 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=61.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+| +|..|++++..|.+.|. +++++.|+++..+........+... ........|+.+.+.+...+. .+|
T Consensus 18 ~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~d 92 (182)
T d1vi2a1 18 GKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN--TDCVVTVTDLADQQAFAEALA--SAD 92 (182)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH--SSCEEEEEETTCHHHHHHHHH--TCS
T ss_pred CCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh--cCcceEeeecccccchhhhhc--ccc
Confidence 47899999 58889999999999986 6778888877666544433333221 123355678889998888887 589
Q ss_pred EEEEccccc
Q 040584 81 AVIHFAGLK 89 (347)
Q Consensus 81 ~vih~a~~~ 89 (347)
+|||+....
T Consensus 93 iiIN~Tp~G 101 (182)
T d1vi2a1 93 ILTNGTKVG 101 (182)
T ss_dssp EEEECSSTT
T ss_pred eeccccCCc
Confidence 999998654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.54 E-value=0.00011 Score=57.43 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=50.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|||.|+| .|-+|..++..|.++||+|.+++|++...+...+.-.. ....+.............++.++++ .+|+
T Consensus 1 sk~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~--~aD~ 75 (184)
T d1bg6a2 1 SKTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAI--IAEGPGLAGTAHPDLLTSDIGLAVK--DADV 75 (184)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSE--EEESSSCCEEECCSEEESCHHHHHT--TCSE
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCC--chhhhhhhhhhhhhhhhhhhHhHhc--CCCE
Confidence 48999999 59999999999999999999999875544332221000 0001111222111111233567777 5899
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
||-+.
T Consensus 76 iii~v 80 (184)
T d1bg6a2 76 ILIVV 80 (184)
T ss_dssp EEECS
T ss_pred EEEEE
Confidence 99985
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00012 Score=52.18 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=54.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
.||.|+| +|.||+-++....+.|++|++++.++..... .-.-.++.+|..|.+.+.++....++|+|
T Consensus 12 ~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~------------~va~~~i~~~~~d~~~l~~~~~~~~~Dvi 78 (111)
T d1kjqa2 12 TRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAM------------HVAHRSHVINMLDGDALRRVVELEKPHYI 78 (111)
T ss_dssp CEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGG------------GGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchh------------hcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence 5799999 9999999999999999999999977654321 01235788999999999888754357888
Q ss_pred E
Q 040584 83 I 83 (347)
Q Consensus 83 i 83 (347)
-
T Consensus 79 T 79 (111)
T d1kjqa2 79 V 79 (111)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00025 Score=53.67 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=59.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
.+|+|+| .|-+|..+++.|.++|++|+++...++......+... ..++.++.+|.+|++.++++--. .+|.|
T Consensus 4 nHiII~G-~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~------~~~~~vi~Gd~~d~~~L~~a~i~-~a~~v 75 (153)
T d1id1a_ 4 DHFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL------GDNADVIPGDSNDSSVLKKAGID-RCRAI 75 (153)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH------CTTCEEEESCTTSHHHHHHHTTT-TCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh------cCCcEEEEccCcchHHHHHhccc-cCCEE
Confidence 4699999 5899999999999999999999876654433333221 34788999999999999887543 58999
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
|-+.
T Consensus 76 i~~~ 79 (153)
T d1id1a_ 76 LALS 79 (153)
T ss_dssp EECS
T ss_pred EEcc
Confidence 8875
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.54 E-value=3.6e-05 Score=57.91 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=27.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC---eEEEEeCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY---KTVVVDNL 35 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~---~v~~~~r~ 35 (347)
.|+|.|.||||++|+.|++.|.+++| ++..+..+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 58999999999999999999987654 56655443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.50 E-value=6.7e-05 Score=57.80 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=31.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
|||.|+| .|.+|+.+++.|.++||+|++.+|++...
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~ 36 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTC 36 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 6799998 69999999999999999999998875443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.45 E-value=0.0001 Score=57.39 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=49.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d~ 81 (347)
.+|||+||+|.+|+..++.+...|.+|++..+++.+.+... .+ +... .+ |-.+ ..+..+.....++|+
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~----~l----Ga~~-vi--~~~~~~~~~~~~~~~~gvD~ 101 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VL----GAKE-VL--AREDVMAERIRPLDKQRWAA 101 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HT----TCSE-EE--ECC---------CCSCCEEE
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH----hc----ccce-ee--ecchhHHHHHHHhhccCcCE
Confidence 57999999999999999999999999999998877654332 22 1111 11 2221 122223333447999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||.+.|-
T Consensus 102 vid~vgg 108 (176)
T d1xa0a2 102 AVDPVGG 108 (176)
T ss_dssp EEECSTT
T ss_pred EEEcCCc
Confidence 9999873
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.45 E-value=0.00012 Score=56.00 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=52.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (347)
+++|+|+|+ |-+|+.+++.|...|+ ++++..|+..+...+...+ +... .+.+++.+.+. .+|
T Consensus 24 ~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~---------~~~~-----~~~~~~~~~l~--~~D 86 (159)
T d1gpja2 24 DKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL---------GGEA-----VRFDELVDHLA--RSD 86 (159)
T ss_dssp TCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH---------TCEE-----CCGGGHHHHHH--TCS
T ss_pred cCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh---------hccc-----ccchhHHHHhc--cCC
Confidence 478999996 9999999999999998 5888888766655444433 1222 23456777887 589
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.+.
T Consensus 87 ivi~atss 94 (159)
T d1gpja2 87 VVVSATAA 94 (159)
T ss_dssp EEEECCSS
T ss_pred EEEEecCC
Confidence 99999874
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.42 E-value=0.00022 Score=56.78 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
|+|.|.| .|++|..++..|+++||+|++++.+...
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~ 35 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTK 35 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHH
Confidence 6899997 9999999999999999999999876443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.00017 Score=55.83 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=51.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|.| +|..+++++..|.+.|.+|+++.|+.++.+.+.+.+... ..+.. .+..+. ....+|+
T Consensus 18 ~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~-----~~~~~--~~~~~~-------~~~~~dl 82 (170)
T d1nyta1 18 GLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT-----GSIQA--LSMDEL-------EGHEFDL 82 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG-----SSEEE--CCSGGG-------TTCCCSE
T ss_pred CCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhc-----ccccc--cccccc-------cccccce
Confidence 47999999 588899999999999999999999877766555544332 12222 222221 1125899
Q ss_pred EEEcccccc
Q 040584 82 VIHFAGLKA 90 (347)
Q Consensus 82 vih~a~~~~ 90 (347)
||++.....
T Consensus 83 iIN~Tp~G~ 91 (170)
T d1nyta1 83 IINATSSGI 91 (170)
T ss_dssp EEECCSCGG
T ss_pred eecccccCc
Confidence 999986543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.41 E-value=0.00013 Score=56.49 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=49.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
.+|+|+||+|-+|...++.+...|++|+++.+++.+.+... ++ +.+.+ .|..+.. .+.-...++|+|
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~----~l------Ga~~~-i~~~~~~--~~~~~~~g~D~v 95 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL----AL------GAEEA-ATYAEVP--ERAKAWGGLDLV 95 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH----HT------TCSEE-EEGGGHH--HHHHHTTSEEEE
T ss_pred CEEEEEeccccchhhhhhhhccccccccccccccccccccc----cc------cccee-eehhhhh--hhhhcccccccc
Confidence 68999999999999999999999999999988766554322 22 22221 1333322 222233379999
Q ss_pred EEccc
Q 040584 83 IHFAG 87 (347)
Q Consensus 83 ih~a~ 87 (347)
|.+.|
T Consensus 96 ~d~~G 100 (171)
T d1iz0a2 96 LEVRG 100 (171)
T ss_dssp EECSC
T ss_pred ccccc
Confidence 99876
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00011 Score=48.41 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=34.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
++|+|+||+|.+|...++.+...|++|+++.+++++.+.
T Consensus 33 ~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~ 71 (77)
T d1o8ca2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEY 71 (77)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHH
T ss_pred CcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHH
Confidence 589999999999999999999999999999988766543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=0.00011 Score=57.46 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=50.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~ 79 (347)
.+|||+||+|.+|..+++.+...|.+|+++.+++++.+ .++++ +...+ .|-.+.+ .+.+.....++
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~----~l~~~------Ga~~v-i~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE----MLSRL------GVEYV-GDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH----HHHTT------CCSEE-EETTCSTHHHHHHHHTTTCCE
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccccccc----ccccc------ccccc-ccCCccCHHHHHHHHhCCCCE
Confidence 58999999999999999999999999999887654332 23322 22222 2333433 33333333479
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|+||.+.|
T Consensus 96 d~v~d~~g 103 (183)
T d1pqwa_ 96 DVVLNSLA 103 (183)
T ss_dssp EEEEECCC
T ss_pred EEEEeccc
Confidence 99999987
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.0011 Score=50.54 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=34.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEI 41 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~ 41 (347)
|++|.|+| .|-+|+.+++.|+++||+|.+.+|++.+.+.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~ 39 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDG 39 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhh
Confidence 47799998 9999999999999999999999988665443
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.35 E-value=0.00026 Score=52.93 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=25.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CC---eEEEEeC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GY---KTVVVDN 34 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~---~v~~~~r 34 (347)
|||.|.||||++|+.|++.|+++ .| ++..+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss 36 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFST 36 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecc
Confidence 68999999999999999998875 33 4554443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00021 Score=55.68 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=53.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~ 78 (347)
+.+|+|+||+|.+|..+++.+...|.+|+++.+++.+.+.. +++ +...+ .|-++.+ .+.++-...+
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~----~~l------Ga~~v-i~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA----LKA------GAWQV-INYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----HHH------TCSEE-EETTTSCHHHHHHHHTTTCC
T ss_pred CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH----Hhc------CCeEE-EECCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999999999999886665432 233 12221 2444433 3334334447
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+|+.+.+.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 9999999863
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.34 E-value=0.001 Score=50.65 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=34.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA 42 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~ 42 (347)
|||.|+| .|.+|+.+++.|+++||+|++.+|++++.+..
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~ 39 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV 39 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHH
Confidence 6799999 89999999999999999999999987665443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.27 E-value=0.00041 Score=54.02 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=27.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVV 32 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~ 32 (347)
|++|.|.||||+.|+.|++.|.++ .+++..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 589999999999999999999997 6777544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.25 E-value=0.0006 Score=52.44 Aligned_cols=77 Identities=26% Similarity=0.326 Sum_probs=50.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCC--CCHHHHHHHHc---c
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL--RDKAALEVVFA---G 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~---~ 76 (347)
+.+|+|+| +|.+|...++.+...|.+|+++++++.+.+.. +++ +....+ ..|- .+.....+.+. .
T Consensus 27 g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a----~~~----ga~~~~-~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 27 GTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA----KNC----GADVTL-VVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHT----TCSEEE-ECCTTTSCHHHHHHHHHHHSS
T ss_pred CCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHH----HHc----CCcEEE-eccccccccchhhhhhhcccc
Confidence 35899998 79999999999999999999999876654432 222 112222 2222 23444433332 2
Q ss_pred CCCcEEEEcccc
Q 040584 77 TKFDAVIHFAGL 88 (347)
Q Consensus 77 ~~~d~vih~a~~ 88 (347)
.++|+||.++|.
T Consensus 97 ~g~D~vid~~g~ 108 (170)
T d1e3ja2 97 DLPNVTIDCSGN 108 (170)
T ss_dssp SCCSEEEECSCC
T ss_pred cCCceeeecCCC
Confidence 369999999874
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.23 E-value=0.00063 Score=49.60 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=27.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVV 32 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~ 32 (347)
|||.|.|++|-.|+.+.+.+.++|+++.+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~ 30 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK 30 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence 689999999999999999999999998754
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.15 E-value=0.00074 Score=50.92 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=32.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
|||.|+| .|.+|+.+++.|+++||+|++.++.+....
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~ 37 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPST 37 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHH
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHH
Confidence 6799998 899999999999999999999887766543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=97.14 E-value=0.00039 Score=54.50 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=35.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAK 45 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (347)
++|.|+|| |.+|+.++..++..|++|+++++++...+...+.
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~ 46 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAE 46 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhh
Confidence 67999995 9999999999999999999999987665544433
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00072 Score=54.43 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=52.9
Q ss_pred CceEEEEcC----------------CCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC
Q 040584 2 AKNILVIGG----------------VGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR 65 (347)
Q Consensus 2 ~~~vlItGa----------------tG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (347)
+|+||||+| ||..|.+|++.|..+|++|+++.-...... ...+..+.. .
T Consensus 6 g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~-------------p~~~~~~~~--~ 70 (223)
T d1u7za_ 6 HLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT-------------PPFVKRVDV--M 70 (223)
T ss_dssp TCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC-------------CTTEEEEEC--C
T ss_pred CCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCc-------------cccccccee--h
Confidence 478999965 799999999999999999998865443211 235555443 4
Q ss_pred CHHHHHHHHcc--CCCcEEEEccccccCC
Q 040584 66 DKAALEVVFAG--TKFDAVIHFAGLKAVG 92 (347)
Q Consensus 66 d~~~~~~~~~~--~~~d~vih~a~~~~~~ 92 (347)
..+++.+.+.. ..+|++|++|++..+.
T Consensus 71 t~~~m~~~~~~~~~~~D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 71 TALEMEAAVNASVQQQNIFIGCAAVADYR 99 (223)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECCBCCSEE
T ss_pred hhHHHHHHHHhhhccceeEeeeechhhhh
Confidence 44555444321 1589999999987653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.0021 Score=43.33 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=50.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|.++|-.|-=-+.|++.|.++||.|.+.++...... +.+..+ ++.+..+ .+.+. ++ ++|.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t---~~L~~~------Gi~i~~g--h~~~~----i~--~~d~ 63 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERT---AYLRKL------GIPIFVP--HSADN----WY--DPDL 63 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHHHHT------TCCEESS--CCTTS----CC--CCSE
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhH---HHHHHC------CCeEEee--ecccc----cC--CCCE
Confidence 488999998877777999999999999999998764432 234433 5555443 22222 23 5899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
||...+..
T Consensus 64 vV~SsAI~ 71 (89)
T d1j6ua1 64 VIKTPAVR 71 (89)
T ss_dssp EEECTTCC
T ss_pred EEEecCcC
Confidence 99998874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00024 Score=54.40 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=33.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
|||+|+|+ |.+|+.++..|++.||+|.++.|.+...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~ 36 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY 36 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence 79999996 9999999999999999999999987643
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00022 Score=55.21 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=27.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNL 35 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~ 35 (347)
|++|.|.||||++|+.|++.|++. ..++..+..+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~ 35 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR 35 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence 579999999999999999999886 4577655433
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.01 E-value=0.0014 Score=50.86 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=50.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+|.|+| +|-.|.+++..|.++|++|.+..|..+. ...+.+........-.......++.-.+++.++++ .+|+|
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~ad~I 75 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE--NAEVV 75 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT--TCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHHHHh--ccchh
Confidence 7999999 7999999999999999999999875432 22333322110000001111112223566788888 58999
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
|.+.
T Consensus 76 i~av 79 (180)
T d1txga2 76 LLGV 79 (180)
T ss_dssp EECS
T ss_pred hccc
Confidence 9875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.00 E-value=0.0077 Score=42.52 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=61.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|+| .|-+|..-++.|++.|..|++++....... .... . ..++.++..+..+.+ +. +++.
T Consensus 12 ~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~~~--~~~~----~--~~~i~~~~~~~~~~d-----l~--~~~l 75 (113)
T d1pjqa1 12 DRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIPQF--TVWA----N--EGMLTLVEGPFDETL-----LD--SCWL 75 (113)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCHHH--HHHH----T--TTSCEEEESSCCGGG-----GT--TCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCChHH--HHHH----h--cCCceeeccCCCHHH-----hC--CCcE
Confidence 48999999 899999999999999999999875544322 1111 1 346677665554322 33 4777
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
|+-+.+- -.-...+.+.|++.++ +|++..
T Consensus 76 v~~at~d-----------------~~~n~~i~~~a~~~~i--lVNv~D 104 (113)
T d1pjqa1 76 AIAATDD-----------------DTVNQRVSDAAESRRI--FCNVVD 104 (113)
T ss_dssp EEECCSC-----------------HHHHHHHHHHHHHTTC--EEEETT
T ss_pred EeecCCC-----------------HHHHHHHHHHHHHcCC--EEEeCC
Confidence 7766421 1112357788888764 777664
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0023 Score=49.06 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=50.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc---cCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA---GTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~~ 78 (347)
.+|+|+|+ |.+|...++.+...|+ +|+++++++.+.+.. +++ +.. ..+..+-.+..+..+.++ ..+
T Consensus 28 d~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a----~~~----Ga~-~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 28 HKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA----KEI----GAD-LVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH----HHT----TCS-EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHH----HHh----CCc-ccccccccccccccccccccCCCC
Confidence 58999986 9999999999999998 688888776554432 222 111 233333345554444432 236
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||.++|.
T Consensus 98 ~Dvvid~~G~ 107 (171)
T d1pl8a2 98 PEVTIECTGA 107 (171)
T ss_dssp CSEEEECSCC
T ss_pred ceEEEeccCC
Confidence 9999999874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.96 E-value=0.00048 Score=52.02 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=46.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|||.|.| +|-+|+++++.|++.|+++++..|+.++.....+++ ++.. ..+..++++ ..|+|
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~---------g~~~-------~~~~~~~~~--~~dvI 61 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL---------ALPY-------AMSHQDLID--QVDLV 61 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH---------TCCB-------CSSHHHHHH--TCSEE
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc---------ceee-------echhhhhhh--cccee
Confidence 6799998 999999999999999999999988766554433322 1111 113455666 58999
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
|-+.
T Consensus 62 ilav 65 (152)
T d2ahra2 62 ILGI 65 (152)
T ss_dssp EECS
T ss_pred eeec
Confidence 9775
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00077 Score=51.74 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=48.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+.+|+|+|+ |.+|...++.+...|.+|+++++++.+.+... ++ +...+. |-.+...+.+.... ++|.
T Consensus 28 g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~----~l------Ga~~~i-~~~~~~~~~~~~~~-~~d~ 94 (168)
T d1piwa2 28 GKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM----KM------GADHYI-ATLEEGDWGEKYFD-TFDL 94 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH----HH------TCSEEE-EGGGTSCHHHHSCS-CEEE
T ss_pred CCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh----cc------CCcEEe-eccchHHHHHhhhc-ccce
Confidence 368999996 99999999988888999999999877665432 22 122211 11112223333333 6899
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
++.+.+.
T Consensus 95 vi~~~~~ 101 (168)
T d1piwa2 95 IVVCASS 101 (168)
T ss_dssp EEECCSC
T ss_pred EEEEecC
Confidence 9999764
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00063 Score=53.51 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=36.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAK 45 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (347)
-++|.|.|| |.+|+.++..++..||+|++++++++..+...+.
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~ 46 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG 46 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhh
Confidence 489999995 9999999999999999999999988765544433
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.86 E-value=0.0018 Score=49.60 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=30.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCCchh
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLDNAS 39 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~~~~ 39 (347)
||+|+|+| .|.+|..+++.|.+.|+ +|++.+++....
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~ 39 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESI 39 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHH
Confidence 46899998 79999999999999986 678888765443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00047 Score=53.48 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=34.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
.+|||+||+|.+|...++.....|++|+++.+++.+.+
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~ 70 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE 70 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHH
Confidence 37999999999999999999999999999998877654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.82 E-value=0.00024 Score=54.68 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=35.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIA 42 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~ 42 (347)
.+|||+||+|.+|...++.....|++|+++.+++++.+..
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~ 64 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL 64 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence 3799999999999999999999999999999987776543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.0023 Score=49.85 Aligned_cols=76 Identities=18% Similarity=0.123 Sum_probs=46.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEE-EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH-HHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA-ALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~~d 80 (347)
.+|||+||+|.+|+..++.+...|.+++ ++.+++++....... + +. -..+...-.+.. .+.++. ..++|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~----ga-d~vi~~~~~~~~~~~~~~~-~~GvD 102 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---L----GF-DAAVNYKTGNVAEQLREAC-PGGVD 102 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---S----CC-SEEEETTSSCHHHHHHHHC-TTCEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---c----cc-eEEeeccchhHHHHHHHHh-ccCce
Confidence 5799999999999999999998998655 445443332222221 1 11 122222222233 333443 34799
Q ss_pred EEEEccc
Q 040584 81 AVIHFAG 87 (347)
Q Consensus 81 ~vih~a~ 87 (347)
+||.+.|
T Consensus 103 vv~D~vG 109 (187)
T d1vj1a2 103 VYFDNVG 109 (187)
T ss_dssp EEEESSC
T ss_pred EEEecCC
Confidence 9999987
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.77 E-value=0.0014 Score=47.83 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=53.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
|+++|+| .|-+|+.+++.| +|++|.++...+...+... ..++.++.+|.++++.|.++--. .++.+
T Consensus 1 kHivI~G-~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~----------~~~~~~i~Gd~~~~~~L~~a~i~-~A~~v 66 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLREL--RGSEVFVLAEDENVRKKVL----------RSGANFVHGDPTRVSDLEKANVR-GARAV 66 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTS--CGGGEEEEESCTTHHHHHH----------HTTCEEEESCTTSHHHHHHTTCT-TCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHH--cCCCCEEEEcchHHHHHHH----------hcCccccccccCCHHHHHHhhhh-cCcEE
Confidence 5789999 688899999999 4677888877666543322 13778999999999999886443 58888
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
|-+.
T Consensus 67 i~~~ 70 (129)
T d2fy8a1 67 IVNL 70 (129)
T ss_dssp EECC
T ss_pred EEec
Confidence 8764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.77 E-value=0.002 Score=49.37 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=48.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCH-HHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDK-AALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~d 80 (347)
.+|+|+|++|.+|...++.+...|+ .|+++++++.+.+. .+++ +.. ..+..+-.|. +.+.+.....++|
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~----~~~~----Ga~-~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEA----AKRA----GAD-YVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHH----HHHH----TCS-EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHH----HHHc----CCc-eeeccCCcCHHHHHHHHhhcccch
Confidence 5899999999999999999998885 78888876554432 2222 111 2222222222 2333333333699
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.++|.
T Consensus 100 ~vid~~g~ 107 (170)
T d1jvba2 100 AVIDLNNS 107 (170)
T ss_dssp EEEESCCC
T ss_pred hhhccccc
Confidence 99999874
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.76 E-value=0.0018 Score=50.24 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=48.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHH----HHHHccC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAAL----EVVFAGT 77 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~----~~~~~~~ 77 (347)
.+|+|+|+ |.+|...++.+...|+ .|+++++++.+.+.. .++ +.. ..+...-.+..+. .+.....
T Consensus 30 ~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a----~~l----Ga~-~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 30 KTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA----EEI----GAD-LTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH----HHT----TCS-EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CEEEEECC-Cccchhheeccccccccccccccccccccccc----ccc----cce-EEEeccccchHHHHHHHHHhhCCC
Confidence 58999996 8999999999999997 789998876654332 222 111 2222211233222 2233333
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|+||.++|.
T Consensus 100 g~Dvvid~vG~ 110 (182)
T d1vj0a2 100 GADFILEATGD 110 (182)
T ss_dssp CEEEEEECSSC
T ss_pred CceEEeecCCc
Confidence 69999999874
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.76 E-value=0.0077 Score=46.22 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=35.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAV 43 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~ 43 (347)
.+|.|+| .|.+|+.+++.|+++||+|++.+|++++.+...
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~ 42 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL 42 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH
Confidence 5789999 899999999999999999999999887765543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0021 Score=49.14 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=51.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+.+|+|.|+ |.+|...++.+...|++++++++++.+.+.. +++ +... ..|..+.+......+ ++|+
T Consensus 31 G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a----~~l------Gad~-~i~~~~~~~~~~~~~--~~D~ 96 (168)
T d1uufa2 31 GKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAA----KAL------GADE-VVNSRNADEMAAHLK--SFDF 96 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHH----HHH------TCSE-EEETTCHHHHHTTTT--CEEE
T ss_pred CCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHH----hcc------CCcE-EEECchhhHHHHhcC--CCce
Confidence 368999996 8899999999999999999988876654322 222 1121 135555555444444 6999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
+|.+.|.
T Consensus 97 vid~~g~ 103 (168)
T d1uufa2 97 ILNTVAA 103 (168)
T ss_dssp EEECCSS
T ss_pred eeeeeec
Confidence 9999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.73 E-value=0.0015 Score=50.35 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=48.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEE-ecCCCCHHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFH-KLDLRDKAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d 80 (347)
.+|+|.|+ |.+|...++.+...|+ +|+++++++.+.+.. .++ +. ...+ .-|-...+.+.+.....++|
T Consensus 29 ~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a----~~l----Ga-~~~i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 29 SSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA----KFY----GA-TDILNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH----HHH----TC-SEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred CEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHH----Hhh----Cc-cccccccchhHHHHHHHHhhccCcc
Confidence 57999985 9999999999999997 688888765544332 222 11 1222 11211233444444444799
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.++|.
T Consensus 99 ~vid~~g~ 106 (174)
T d1jqba2 99 RVIMAGGG 106 (174)
T ss_dssp EEEECSSC
T ss_pred eEEEccCC
Confidence 99999974
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.72 E-value=0.0097 Score=40.61 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=49.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.++|.++|..|-=-+.|++.|.++||+|.+.++....... .+.+ .++.+..++- ++. +. ++|.
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~---~L~~------~Gi~v~~g~~--~~~----i~--~~d~ 70 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQ---RLAQ------AGAKIYIGHA--EEH----IE--GASV 70 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHH---HHHH------TTCEEEESCC--GGG----GT--TCSE
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhh---HHHH------CCCeEEECCc--ccc----CC--CCCE
Confidence 3789999976665588999999999999999987554322 2222 2555555432 221 23 5899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
||...|..
T Consensus 71 vV~S~AI~ 78 (96)
T d1p3da1 71 VVVSSAIK 78 (96)
T ss_dssp EEECTTSC
T ss_pred EEECCCcC
Confidence 99998864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.70 E-value=0.0019 Score=49.62 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=51.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|.| +|..+++++..|.+.+-+|+++.|+.++.+...+.+... ..+..+..|-.+ +. .+|+
T Consensus 18 ~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~-----~~~~~~~~~~~~-------~~--~~di 82 (171)
T d1p77a1 18 NQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY-----GNIQAVSMDSIP-------LQ--TYDL 82 (171)
T ss_dssp TCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-----SCEEEEEGGGCC-------CS--CCSE
T ss_pred CCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc-----cccchhhhcccc-------cc--ccce
Confidence 46899999 677799999999998899999999987776665555432 233444433211 22 5899
Q ss_pred EEEcccccc
Q 040584 82 VIHFAGLKA 90 (347)
Q Consensus 82 vih~a~~~~ 90 (347)
||++.....
T Consensus 83 iIN~tp~g~ 91 (171)
T d1p77a1 83 VINATSAGL 91 (171)
T ss_dssp EEECCCC--
T ss_pred eeecccccc
Confidence 999987543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.69 E-value=0.00087 Score=52.55 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=52.0
Q ss_pred ceEEE-EcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEec---CCCCHH-HHHHHHc--
Q 040584 3 KNILV-IGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL---DLRDKA-ALEVVFA-- 75 (347)
Q Consensus 3 ~~vlI-tGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Dl~d~~-~~~~~~~-- 75 (347)
.+++| +||+|.+|...++.....|.+|+++.|+++..++..+.++++.. . ..+.- |..+.. .+.+...
T Consensus 30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGa----d-~vi~~~~~~~~~~~~~v~~~~~~~ 104 (189)
T d1gu7a2 30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA----T-QVITEDQNNSREFGPTIKEWIKQS 104 (189)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC----S-EEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccc----c-EEEeccccchhHHHHHHHHHHhhc
Confidence 46777 58999999999999999999999998887776665666665521 1 11211 222211 1222221
Q ss_pred cCCCcEEEEccc
Q 040584 76 GTKFDAVIHFAG 87 (347)
Q Consensus 76 ~~~~d~vih~a~ 87 (347)
..++|+|+++.|
T Consensus 105 g~~vdvv~D~vg 116 (189)
T d1gu7a2 105 GGEAKLALNCVG 116 (189)
T ss_dssp TCCEEEEEESSC
T ss_pred cCCceEEEECCC
Confidence 226999999976
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.67 E-value=0.0061 Score=44.53 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhC-CCeEEEE
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG-GYKTVVV 32 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~-g~~v~~~ 32 (347)
||.|.|++|-.|+.+++.+.+. ++++.+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~ 30 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE 30 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 6999999999999999998764 6787653
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.63 E-value=0.00048 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=22.1
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY 27 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~ 27 (347)
+|.|.||||++|..|++.|.++.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCS
T ss_pred EEEEECCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999988765
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.62 E-value=0.0051 Score=44.66 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=58.8
Q ss_pred ceEEEEcCC---CcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 3 KNILVIGGV---GYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGat---G~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
++|.|.||| +..|..+.+.|.+.| ++|+.+....... .+... .-++.|. -. .
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i---------------~G~~~-y~sl~dl------p~--~ 64 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV---------------QGVKA-YKSVKDI------PD--E 64 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE---------------TTEEC-BSSTTSC------SS--C
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc---------------CCeEe-ecchhhc------CC--C
Confidence 689999999 999999999988766 7899886443221 12222 2233332 22 5
Q ss_pred CcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 79 FDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 79 ~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
+|.++-+... ..+..+++.|.+.|++.++.+|+.
T Consensus 65 vDlvvi~vp~------------------~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 65 IDLAIIVVPK------------------RFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp CSEEEECSCH------------------HHHHHHHHHHHHHTCCEEEECCCS
T ss_pred CceEEEecCh------------------HHhHHHHHHHHHcCCCEEEEeccc
Confidence 8999887532 224467888888999888888875
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0054 Score=41.66 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=56.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+|+|+|. |-.|..+++.|.++|++|++.+.+...... +.+ ......+.+... . ..+. .+|.
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~--~~~-------~~~~~~~~~~~~-~----~~~~--~~d~ 67 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGL--DKL-------PEAVERHTGSLN-D----EWLM--AADL 67 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTG--GGS-------CTTSCEEESBCC-H----HHHH--HCSE
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhH--HHH-------hhccceeecccc-h----hhhc--cCCE
Confidence 578999995 888999999999999999999876543211 111 123444444432 2 2234 4799
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCC
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGC 121 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~ 121 (347)
||-.-|.... . .+++.+++.++
T Consensus 68 vi~SPGi~~~-----~-------------~~~~~a~~~gi 89 (93)
T d2jfga1 68 IVASPGIALA-----H-------------PSLSAAADAGI 89 (93)
T ss_dssp EEECTTSCTT-----S-------------HHHHHHHHTTC
T ss_pred EEECCCCCCC-----C-------------HHHHHHHHcCC
Confidence 9998776421 1 36777777776
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.52 E-value=0.00099 Score=51.62 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=35.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA 44 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (347)
.|||-|+| .|.+|..+++.|+++||+|++.+|++++.+.+.+
T Consensus 1 ~MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~ 42 (178)
T d1pgja2 1 SMDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK 42 (178)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH
T ss_pred CCEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 37899999 9999999999999999999999987766554433
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.48 E-value=0.00061 Score=53.15 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=26.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDN 34 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r 34 (347)
.||.|.||||+.|+.|++.|.++ ..++..+..
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S 38 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA 38 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence 58999999999999999999987 457665543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.47 E-value=0.0064 Score=46.32 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=34.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVA 44 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~ 44 (347)
+++|+|+| +|..|++++..|.+.|. +|.++.|+.++.+.+.+
T Consensus 17 ~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~ 59 (167)
T d1npya1 17 NAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA 59 (167)
T ss_dssp TSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence 36899999 58899999999999996 78888888766554433
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.015 Score=43.20 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=28.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDN 34 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r 34 (347)
||+|.|.|+||.||+....-+.+. .++|.++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 578999999999999999988885 588887653
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.37 E-value=0.0098 Score=45.41 Aligned_cols=119 Identities=18% Similarity=0.095 Sum_probs=69.2
Q ss_pred CceEEEEcCCCcccHH--HHHHHHhC----CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 2 AKNILVIGGVGYIGSH--TVLQLLLG----GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 2 ~~~vlItGatG~iG~~--l~~~L~~~----g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
+|||.|.|| |.+|.. ++..|+.. +.++.+++.++.+.+.....+.+..........+... .+..++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~-----td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-----MNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe-----CChhhccc
Confidence 489999995 888865 44555543 4699999988766554333333332222333333322 23556777
Q ss_pred cCCCcEEEEccccccCCcc-------------------ccC---c--chhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 76 GTKFDAVIHFAGLKAVGES-------------------VQK---P--LPYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 76 ~~~~d~vih~a~~~~~~~~-------------------~~~---~--~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
++|+||..++....... +.+ + .....-|+.-.+.+++..++.... .+|.+|
T Consensus 76 --dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 76 --DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp --TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 69999999876432110 000 0 001123777788888888887644 555554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.17 E-value=0.015 Score=44.54 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=51.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d 80 (347)
.+|+|+| .|.+|...++.+...| .+|+++++++.+.+...+. +....+-.-|-.+ .+.+.+.....++|
T Consensus 31 ~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~--------GA~~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 31 STCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV--------GATECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH--------TCSEEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc--------CCcEEECccccchHHHHHHHHhccccce
Confidence 5799998 5999999999999999 5799999887776543322 1111121122222 34444555545899
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
++|.+.+.
T Consensus 102 ~vi~~~g~ 109 (176)
T d1d1ta2 102 YTFEVIGH 109 (176)
T ss_dssp EEEECSCC
T ss_pred EEEEeCCc
Confidence 99999875
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.16 E-value=0.025 Score=43.02 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDN 34 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r 34 (347)
|++||.|-| .|.||+.+++.|.++ ..+++++..
T Consensus 1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd 34 (172)
T d2czca2 1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK 34 (172)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence 899999999 799999999999876 477777653
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.12 E-value=0.0016 Score=50.97 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=49.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
|+||.|+| +|-.|++++..|.++||+|++..|+++..+...+.- ....+-+++.+ .-++.-..++.++++ +.|+
T Consensus 7 m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~--~n~~yl~~~~l-~~~i~~t~~l~~a~~--~ad~ 80 (189)
T d1n1ea2 7 LNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKR--ENVLFLKGVQL-ASNITFTSDVEKAYN--GAEI 80 (189)
T ss_dssp EEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHT--BCTTTSTTCBC-CTTEEEESCHHHHHT--TCSC
T ss_pred eceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcc--ccccccccccc-ccccccchhhhhccC--CCCE
Confidence 35799999 888999999999999999999988654433222110 00001111211 111221234677787 5899
Q ss_pred EEEcc
Q 040584 82 VIHFA 86 (347)
Q Consensus 82 vih~a 86 (347)
||.+.
T Consensus 81 iiiav 85 (189)
T d1n1ea2 81 ILFVI 85 (189)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 98875
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.04 E-value=0.016 Score=44.27 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=45.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEE-EEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH-HHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV-VVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA-ALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~~~d 80 (347)
.+|+|.|+ |.+|...++.+...|+.++ ++++++.+.+. .+++ + -..++..+-.|.. .+.++... ++|
T Consensus 30 ~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~----a~~~----G-a~~~i~~~~~~~~~~i~~~t~g-g~D 98 (174)
T d1f8fa2 30 SSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLEL----AKQL----G-ATHVINSKTQDPVAAIKEITDG-GVN 98 (174)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHH----HHHH----T-CSEEEETTTSCHHHHHHHHTTS-CEE
T ss_pred CEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHH----HHHc----C-CeEEEeCCCcCHHHHHHHHcCC-CCc
Confidence 58999996 9999999999988888765 45554443332 2232 1 1123322222222 22333333 799
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.|.
T Consensus 99 ~vid~~G~ 106 (174)
T d1f8fa2 99 FALESTGS 106 (174)
T ss_dssp EEEECSCC
T ss_pred EEEEcCCc
Confidence 99999874
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.00066 Score=51.72 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=55.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEE-EeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVV-VDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
.+||+|.|++|.+|+.+++.+.+. +.++.+ +.|...... -..+.++.+.....+ .+.-| +..+++ .+
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~--g~d~~~~~~~~~~~~-~~~~~------~~~~~~--~~ 72 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL--GSDAGELAGAGKTGV-TVQSS------LDAVKD--DF 72 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC--SCCTTCSSSSSCCSC-CEESC------STTTTT--SC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc--cchhhhhhccccCCc-eeecc------HHHHhc--cc
Confidence 478999999999999999999885 677764 444432210 000000000001111 11222 233444 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
|+||...-+ .++...++.|.+.++ .+|.-+|
T Consensus 73 DViIDFs~p------------------~~~~~~~~~a~~~~~-~~ViGTT 103 (162)
T d1diha1 73 DVFIDFTRP------------------EGTLNHLAFCRQHGK-GMVIGTT 103 (162)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHTTC-EEEECCC
T ss_pred ceEEEeccH------------------HHHHHHHHHHHhccc-eeEEecC
Confidence 999998632 334567888888876 5664433
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.90 E-value=0.02 Score=43.69 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=49.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCC-HHHHHHHHccCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRD-KAALEVVFAGTKFD 80 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~d 80 (347)
.+|+|.|+ |.+|...+..+...| ..|+++++++.+.+...+ + +....+...+..+ .....+.....++|
T Consensus 30 dtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~----Ga~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 30 STCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----V----GATECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----T----TCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----h----CCeeEEecCCchhHHHHHHHHHhcCCCC
Confidence 58999998 568999999999988 478888887776553322 1 1111121223222 23334444444799
Q ss_pred EEEEcccc
Q 040584 81 AVIHFAGL 88 (347)
Q Consensus 81 ~vih~a~~ 88 (347)
+||.+.|.
T Consensus 101 ~vid~~G~ 108 (176)
T d2jhfa2 101 FSFEVIGR 108 (176)
T ss_dssp EEEECSCC
T ss_pred EEEecCCc
Confidence 99999875
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=95.88 E-value=0.0033 Score=47.16 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=32.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIA 42 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~ 42 (347)
|+|.++| +|-+|+++++.|++.| ++|++.+|++++.+.+
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l 40 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKRERL 40 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHh
Confidence 6899998 6999999999999887 9999998886655443
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.74 E-value=0.015 Score=41.12 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=54.0
Q ss_pred ceEEEEcCC---CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGV---GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGat---G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
|+|.|.|++ +-.|..+.+.|++.||+|+.+....... .+... ..++.++-+ .+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i---------------~G~~~-------y~sl~~lp~--~~ 57 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI---------------EGLKC-------YRSVRELPK--DV 57 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------------TTEEC-------BSSGGGSCT--TC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc---------------cCccc-------cccchhccc--cc
Confidence 789999988 7789999999999999998885332211 01222 122222333 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEE
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVF 126 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~ 126 (347)
|.++-+... ..+..+++.|.+.|++.+++
T Consensus 58 D~vvi~vp~------------------~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 58 DVIVFVVPP------------------KVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp CEEEECSCH------------------HHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCH------------------HHHHHHHHHHHhcCCceEEe
Confidence 988877532 22446778888888876654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.69 E-value=0.023 Score=44.21 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=29.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS 39 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~ 39 (347)
|+|.|.| .|++|..++..| ++||+|++++-++...
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v 35 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKV 35 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHH
Confidence 7899998 999999998755 5799999998765543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.69 E-value=0.0081 Score=47.00 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=46.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|.| .|.||+.+++.|..-|.+|++.++....... . .. ....++.+++. .+|+
T Consensus 43 gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-~-----------~~--------~~~~~l~~~l~--~sDi 99 (197)
T d1j4aa1 43 DQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELE-K-----------KG--------YYVDSLDDLYK--QADV 99 (197)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-H-----------TT--------CBCSCHHHHHH--HCSE
T ss_pred CCeEEEec-ccccchhHHHhHhhhcccccccCcccccccc-c-----------ce--------eeecccccccc--cccc
Confidence 47999999 9999999999999999999999876543221 0 01 11234677777 4898
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
|+.+...
T Consensus 100 i~~~~pl 106 (197)
T d1j4aa1 100 ISLHVPD 106 (197)
T ss_dssp EEECSCC
T ss_pred ccccCCc
Confidence 8888654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.68 E-value=0.01 Score=45.76 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=47.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|.| .|-||+.+++.|..-|.+|++.+|...... ..-.+++.+++. .+|+
T Consensus 42 gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~-----------------------~~~~~~l~ell~--~sDi 95 (181)
T d1qp8a1 42 GEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGP-----------------------WRFTNSLEEALR--EARA 95 (181)
T ss_dssp TCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSS-----------------------SCCBSCSHHHHT--TCSE
T ss_pred CceEEEec-cccccccceeeeeccccccccccccccccc-----------------------eeeeechhhhhh--ccch
Confidence 57999999 899999999999999999999987654221 111224678888 5899
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
|+.+...
T Consensus 96 v~~~~pl 102 (181)
T d1qp8a1 96 AVCALPL 102 (181)
T ss_dssp EEECCCC
T ss_pred hhccccc
Confidence 9987754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.66 E-value=0.018 Score=43.48 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=31.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
.+|+|.|+ |.+|...++.+...|++|+++++++.+.+
T Consensus 29 ~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~ 65 (166)
T d1llua2 29 QWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLE 65 (166)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHH
Confidence 68999985 99999999999999999999988755543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.65 E-value=0.029 Score=42.77 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC--CHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR--DKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~~~~~~~~~~~~~ 79 (347)
.+|+|+| .|.+|...++.+...|. .|++.++++.+.+.. ++ + + -...+...-. ......+.....++
T Consensus 30 ~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~~---~----G-a~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 30 STCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KA---L----G-ATDCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HH---T----T-CSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHHHH-HH---h----C-CCcccCCccchhhhhhhHhhhhcCCC
Confidence 5899998 59999999999999997 567777766654332 22 2 1 1122221111 23334444444589
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||.++|.
T Consensus 100 d~vie~~G~ 108 (174)
T d1e3ia2 100 DYSLDCAGT 108 (174)
T ss_dssp SEEEESSCC
T ss_pred cEEEEeccc
Confidence 999999985
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.62 E-value=0.017 Score=43.44 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=56.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
-+|+|+| .|-.|..-++.+...|.+|.+++.+..+.+.....+. ..++.. ..+.+.+.+.++ .+|+|
T Consensus 33 a~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-------~~~~~~---~~~~~~l~~~~~--~aDiv 99 (168)
T d1pjca1 33 GKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-------SRVELL---YSNSAEIETAVA--EADLL 99 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-------GGSEEE---ECCHHHHHHHHH--TCSEE
T ss_pred cEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-------ccceee---hhhhhhHHHhhc--cCcEE
Confidence 3899999 8999999999999999999999987665544333322 233332 356778888888 58999
Q ss_pred EEcccccc
Q 040584 83 IHFAGLKA 90 (347)
Q Consensus 83 ih~a~~~~ 90 (347)
|-++-.+.
T Consensus 100 I~aalipG 107 (168)
T d1pjca1 100 IGAVLVPG 107 (168)
T ss_dssp EECCCCTT
T ss_pred EEeeecCC
Confidence 99987543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0053 Score=39.98 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=32.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
+|+|.|+| +|.+|+-++..-.+.|++|++++..+..
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 48999999 9999999999999999999999865543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.57 E-value=0.017 Score=42.36 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=55.3
Q ss_pred ceEEEEcCC---CcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGV---GYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGat---G~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
++|+|.||+ +-.|..+++.|.+.||+|+.+....... .+... .-+ +..+-. .+
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i---------------~G~~~-~~s------l~dlp~--~i 75 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV---------------LGRKC-YPS------VLDIPD--KI 75 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---------------TTEEC-BSS------GGGCSS--CC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc---------------CCCcc-ccc------ccccCc--cc
Confidence 689999998 7899999999999999999885432211 01111 112 222223 58
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEec
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSS 128 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S 128 (347)
|+|+-+..+ ..+..+++.|.+.|++.+++..
T Consensus 76 D~v~i~vp~------------------~~~~~~~~e~~~~g~k~v~~~~ 106 (139)
T d2d59a1 76 EVVDLFVKP------------------KLTMEYVEQAIKKGAKVVWFQY 106 (139)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHHTCSEEEECT
T ss_pred eEEEEEeCH------------------HHHHHHHHHHHHhCCCEEEEec
Confidence 888877532 2344678888888887665433
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.41 E-value=0.016 Score=45.26 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=48.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCC--C-HHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLR--D-KAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d-~~~~~~~~~~~ 77 (347)
+.+|+|.|+ |-+|...++.+...|. .|+++++++.+.+.. .++ +...+. |-. + .+.+.++....
T Consensus 26 G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a----~~~------Ga~~~~-~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 26 GSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA----KAQ------GFEIAD-LSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH----HHT------TCEEEE-TTSSSCHHHHHHHHHSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhh----hhc------cccEEE-eCCCcCHHHHHHHHhCCC
Confidence 368999985 9999888888877776 677887765554332 222 233332 222 2 23444555555
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|++|.+.|.
T Consensus 94 g~D~vid~vG~ 104 (195)
T d1kola2 94 EVDCAVDAVGF 104 (195)
T ss_dssp CEEEEEECCCT
T ss_pred CcEEEEECccc
Confidence 79999999984
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.36 E-value=0.01 Score=42.06 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=31.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++++|.| .|++|..++..|.+.|.+|+++.|.+.
T Consensus 23 ~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence 6899999 899999999999999999999988765
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.34 E-value=0.011 Score=42.37 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=31.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
++++|.| .|++|..++..|.+.|.+|+++.+.+..
T Consensus 31 ~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~~ 65 (121)
T d1d7ya2 31 SRLLIVG-GGVIGLELAATARTAGVHVSLVETQPRL 65 (121)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CeEEEEC-cchhHHHHHHHhhcccceEEEEeecccc
Confidence 6899999 8999999999999999999999887653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.011 Score=42.41 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=31.8
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
++++|.| .|+||..++..|.+.|.+|+++.+.+.-
T Consensus 24 ~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~~ 58 (122)
T d1v59a2 24 KRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQI 58 (122)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CeEEEEC-CCchHHHHHHHHHhhCcceeEEEecccc
Confidence 6899999 8999999999999999999999876543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.014 Score=43.98 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=30.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN 34 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r 34 (347)
+|+|+|.|-+..+|+.|+..|+++|+.|+.+..
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred cceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 589999999999999999999999999988754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.19 E-value=0.058 Score=40.84 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=45.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCe-EEEEeCCCchhHHHHHHHHHhhccCCCCeEEEec-CC-CCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYK-TVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL-DL-RDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl-~d~~~~~~~~~~~~~ 79 (347)
.+|+|.|+ |.+|...++.+...|.. |+++++++.+.+. .+++ +.. ..+.. +- .+.....+.....++
T Consensus 30 ~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~l-------Ga~-~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 30 SVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEF-------GAT-ECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHH-------TCS-EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHh-------CCc-EEEeCCchhhHHHHHHHHHcCCCC
Confidence 58999997 57899999999999965 5666665555432 2222 111 12211 11 223333333333479
Q ss_pred cEEEEcccc
Q 040584 80 DAVIHFAGL 88 (347)
Q Consensus 80 d~vih~a~~ 88 (347)
|+||.+.|.
T Consensus 100 D~vid~~G~ 108 (176)
T d2fzwa2 100 DYSFECIGN 108 (176)
T ss_dssp SEEEECSCC
T ss_pred cEeeecCCC
Confidence 999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.19 E-value=0.037 Score=41.98 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=46.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.+|+|.|+ |.+|...++.+...|. .|+++++++.+.+. .+++. ....+..+-.+.+...+.....++|+
T Consensus 34 ~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~----~~~~g-----a~~~i~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 34 AYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKL----AERLG-----ADHVVDARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHH----HHHTT-----CSEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred CEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHH----Hhhcc-----cceeecCcccHHHHHHHhhCCCCceE
Confidence 57999885 9999999999988885 55666665544332 22221 12233322122333444444447999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||.++|.
T Consensus 104 vid~~g~ 110 (172)
T d1h2ba2 104 AMDFVGS 110 (172)
T ss_dssp EEESSCC
T ss_pred EEEecCc
Confidence 9999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.12 E-value=0.044 Score=41.64 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=49.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCchhHHHHHHHHHhhccCCCCeE-EEecCCCC--HHHHHHHHccC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNASEIAVAKVKELAGYQGNNMT-FHKLDLRD--KAALEVVFAGT 77 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d--~~~~~~~~~~~ 77 (347)
+.+|+|.|+ |.+|...++.+...|. +|+++++++.+.+... ++ +.. .+...-.| ...........
T Consensus 28 G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~----~l------Ga~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 28 GSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----EL------GATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HT------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH----Hc------CCcEEEcCCCchhHHHHHHHHhcCC
Confidence 358999995 9999999999999986 6788888776654332 22 222 22111112 23333344434
Q ss_pred CCcEEEEcccc
Q 040584 78 KFDAVIHFAGL 88 (347)
Q Consensus 78 ~~d~vih~a~~ 88 (347)
++|+||.+++.
T Consensus 97 G~d~vid~~g~ 107 (174)
T d1p0fa2 97 GVDYAVECAGR 107 (174)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEEcCCC
Confidence 79999999874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.09 E-value=0.012 Score=41.73 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++|+|.| .|++|-.++..|.+.|.+|+++.|.+.
T Consensus 23 ~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 23 KKIGIVG-SGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CEEEEEC-CchHHHHHHHHHHhccccceeeehhcc
Confidence 6899999 899999999999999999999988654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.08 E-value=0.017 Score=44.93 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=47.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|.| .|-||+.+++.|..-|.+|++.++.......... ++ ....++.+++. .+|+
T Consensus 49 gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~-----------~~-------~~~~~l~~ll~--~sD~ 107 (193)
T d1mx3a1 49 GETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERAL-----------GL-------QRVSTLQDLLF--HSDC 107 (193)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHH-----------TC-------EECSSHHHHHH--HCSE
T ss_pred CceEEEec-cccccccceeeeeccccceeeccCcccccchhhh-----------cc-------ccccchhhccc--cCCE
Confidence 47999999 9999999999999999999999876554321110 11 11234667777 4788
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
|+.+...
T Consensus 108 i~~~~pl 114 (193)
T d1mx3a1 108 VTLHCGL 114 (193)
T ss_dssp EEECCCC
T ss_pred EEEeecc
Confidence 8877654
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.06 E-value=0.022 Score=43.51 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=36.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHH
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKE 48 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~ 48 (347)
+++|+|+| +|..+++++..|.+.| +|+++.|+.++.+.+.+.+..
T Consensus 18 ~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~ 62 (177)
T d1nvta1 18 DKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAE 62 (177)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHH
T ss_pred CCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHH
Confidence 47899999 6778999999998777 899999988877766665543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.05 E-value=0.014 Score=41.74 Aligned_cols=34 Identities=41% Similarity=0.668 Sum_probs=31.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++|+|.| .|++|..++..|.+.|.+|+++.+.+.
T Consensus 31 k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 31 NNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CEEEEEC-ChHHHHHHHHHhhccceEEEEEEecCc
Confidence 6899998 899999999999999999999987654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.013 Score=41.44 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=31.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
++|+|.| .|++|..++..|.+.|.+|+++.|.+..
T Consensus 22 ~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~~ 56 (116)
T d1gesa2 22 ERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDAP 56 (116)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CEEEEEC-CChhhHHHHHHhhccccEEEEEeecchh
Confidence 6899999 8999999999999999999999887643
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.04 E-value=0.015 Score=41.40 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=31.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++++|+| .|+||..++..|.+.|.+|+++.+.+.
T Consensus 23 ~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 23 GKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence 6899999 999999999999999999999987765
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.94 E-value=0.083 Score=39.76 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=48.1
Q ss_pred CceEEEEcCCCcccHH-HHHHHHhC-----CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 2 AKNILVIGGVGYIGSH-TVLQLLLG-----GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 2 ~~~vlItGatG~iG~~-l~~~L~~~-----g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
..||.|.|| |.+|.. ++..|+.. +-++.+++..+++.+.....+................ .+..++++
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~ 76 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT 76 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccC
Confidence 358999998 445654 55566553 2378889887766654333333332222223333222 23567777
Q ss_pred cCCCcEEEEcccccc
Q 040584 76 GTKFDAVIHFAGLKA 90 (347)
Q Consensus 76 ~~~~d~vih~a~~~~ 90 (347)
+.|+||..|+...
T Consensus 77 --~AD~Vvitag~~~ 89 (167)
T d1u8xx1 77 --DVDFVMAHIRVGK 89 (167)
T ss_dssp --SCSEEEECCCTTH
T ss_pred --CCCEEEECCCcCC
Confidence 6999999999754
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.92 E-value=0.017 Score=44.30 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=27.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNL 35 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~ 35 (347)
|-||.|-| .|.||+.+++.|.++ +.+|+++...
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~ 34 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKT 34 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECC
Confidence 46899999 899999999999986 5788887543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.2 Score=40.05 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=64.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC-------------------chhHHHHHHHHHhhccCCCCeEEEec
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD-------------------NASEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
.+|+|.| .|.+|++++..|.+.|. ++++++... .+.+.+.+.+.+. .+.+.....
T Consensus 31 ~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~----np~~~i~~~ 105 (247)
T d1jw9b_ 31 SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI----NPHIAITPV 105 (247)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH----CTTSEEEEE
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh----hcccchhhh
Confidence 5899999 88899999999999997 455554211 1122233344443 334444433
Q ss_pred CCC-CHHHHHHHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccC
Q 040584 63 DLR-DKAALEVVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYG 134 (347)
Q Consensus 63 Dl~-d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg 134 (347)
+.. +.......+. ..|+||.+.. |...-..+-++|.+.++ .+|+.+....+|
T Consensus 106 ~~~~~~~~~~~~~~--~~divid~~d-----------------~~~~~~~in~~~~~~~i-p~i~g~~~~~~g 158 (247)
T d1jw9b_ 106 NALLDDAELAALIA--EHDLVLDCTD-----------------NVAVRNQLNAGCFAAKV-PLVSGAAIRMEG 158 (247)
T ss_dssp CSCCCHHHHHHHHH--TSSEEEECCS-----------------SHHHHHHHHHHHHHHTC-CEEEEEEEBTEE
T ss_pred hhhhhhcccccccc--ccceeeeccc-----------------hhhhhhhHHHHHHHhCC-Cccccccccccc
Confidence 332 3444555666 5899988752 23333355667777776 577666555444
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.02 Score=42.93 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=46.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+++|+| .|.+|+.+++.|...|.+|++....+...- .... .+.. ...+++++. ..|+
T Consensus 24 Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al--~A~~--------dG~~--------v~~~~~a~~--~adi 82 (163)
T d1li4a1 24 GKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINAL--QAAM--------EGYE--------VTTMDEACQ--EGNI 82 (163)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH--HHHH--------TTCE--------ECCHHHHTT--TCSE
T ss_pred CCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhH--Hhhc--------CceE--------eeehhhhhh--hccE
Confidence 48999999 999999999999999999999987543321 1111 1111 123556666 4788
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
||-+.|-
T Consensus 83 vvtaTGn 89 (163)
T d1li4a1 83 FVTTTGC 89 (163)
T ss_dssp EEECSSC
T ss_pred EEecCCC
Confidence 8888763
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.84 E-value=0.015 Score=46.97 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=30.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
++|+|+| .|..|...+..|+++|++|.++.|..
T Consensus 7 ~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLG-SGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5899999 89999999999999999999998754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.80 E-value=0.016 Score=41.43 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=30.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++++|.| .|++|-.++..|.+.|++|+++.|.+.
T Consensus 33 ~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEEC-CcHHHHHHHHHhhcccceEEEEecccc
Confidence 5789999 899999999999999999999987654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.017 Score=41.43 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=31.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++++|.| .|++|..++..|.+.|.+|+++.|++.
T Consensus 23 k~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 6899999 899999999999999999999998764
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.68 E-value=0.028 Score=43.86 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=44.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|-| .|-+|+++++.|.+.|..|++.+....... ..... +.+.+. . .+++.. .+|+
T Consensus 27 gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~----~~~~~------g~~~~~-----~---~~~~~~-~~DI 86 (201)
T d1c1da1 27 GLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVA----HAVAL------GHTAVA-----L---EDVLST-PCDV 86 (201)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH----HHHHT------TCEECC-----G---GGGGGC-CCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHH----HHHhh------cccccC-----c---cccccc-ccee
Confidence 47899998 999999999999999999998865433221 11111 222221 1 234443 6999
Q ss_pred EEEccc
Q 040584 82 VIHFAG 87 (347)
Q Consensus 82 vih~a~ 87 (347)
++-||.
T Consensus 87 ~iPcA~ 92 (201)
T d1c1da1 87 FAPCAM 92 (201)
T ss_dssp EEECSC
T ss_pred eecccc
Confidence 999975
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.65 E-value=0.043 Score=41.19 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=31.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASE 40 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~ 40 (347)
.+|+|.|+ |-+|...++.+...|++|+++++++.+..
T Consensus 29 ~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~ 65 (168)
T d1rjwa2 29 EWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLE 65 (168)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhh
Confidence 58999875 88999999999999999999987665543
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.034 Score=42.00 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=31.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
+|+|+|.|.+..+|+.|+..|+++|..|+.+...
T Consensus 39 Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~ 72 (170)
T d1a4ia1 39 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 72 (170)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred cceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence 5899999999999999999999999999987643
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.54 E-value=0.016 Score=40.89 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++++|.| .|++|-.++..|.+.|++|+++.+.+.
T Consensus 22 ~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHhhcccceEEEeeecc
Confidence 6889998 999999999999999999999987654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.49 E-value=0.021 Score=41.41 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=31.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
++|+|.| +|++|..++..|.+.|.+|+++.+.+..
T Consensus 36 k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 36 NRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAARV 70 (133)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CEEEEEC-CchHHHHHHHHHHhhCcceeeeeecccc
Confidence 6899999 9999999999999999999999887653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.37 E-value=0.049 Score=40.41 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=29.6
Q ss_pred ceEEEE-cCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVI-GGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlIt-GatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
+.++|. .+.||+|..+++.|.+.|++|+++.+.+..
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA 76 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 455665 357999999999999999999999887544
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=94.33 E-value=0.039 Score=42.59 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=47.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
++++.|.| .|.||+.++++|..-|.+|...++........... . .....++.++++ .+|+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~----------~-------~~~~~~l~~~l~--~sD~ 103 (188)
T d2naca1 44 AMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL----------N-------LTWHATREDMYP--VCDV 103 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH----------T-------CEECSSHHHHGG--GCSE
T ss_pred ccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccc----------c-------ccccCCHHHHHH--hccc
Confidence 36899999 99999999999999999999998865543321110 1 112234566777 4888
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|+-+....
T Consensus 104 v~~~~plt 111 (188)
T d2naca1 104 VTLNCPLH 111 (188)
T ss_dssp EEECSCCC
T ss_pred hhhccccc
Confidence 87776543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.32 E-value=0.067 Score=40.39 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=27.8
Q ss_pred CC-ceEEEEcCCCcccHHHHHHHHhC-CCeEEEE-eCCC
Q 040584 1 MA-KNILVIGGVGYIGSHTVLQLLLG-GYKTVVV-DNLD 36 (347)
Q Consensus 1 m~-~~vlItGatG~iG~~l~~~L~~~-g~~v~~~-~r~~ 36 (347)
|+ +||.|.| +|.+|+.+++.|.+. +.+++++ +|++
T Consensus 1 M~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~ 38 (170)
T d1f06a1 1 MTNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRA 38 (170)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred CCcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence 66 5899999 799999999999885 6788755 4443
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.31 E-value=0.092 Score=38.91 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=30.3
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHH
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVA 44 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (347)
||.++| .|.+|..+++.|++.|+.+ ...|.+++.....+
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~ 40 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQE 40 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHH
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHH
Confidence 688999 7999999999999999876 45666655544333
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.31 E-value=0.021 Score=40.74 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=29.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
++++|+| .|+||..++..|.+.|.+|+++.|+
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence 5799999 8999999999999999999998875
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.28 E-value=0.029 Score=40.25 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=59.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
.+|+|.| +|.+|+.|++.+.. .||+++++-....... +..-.++..+. .+.+.++.+. .+++
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~----------G~~I~Gi~V~~-----~~~l~~~~~~-~i~i 66 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKV----------GRPVRGGVIEH-----VDLLPQRVPG-RIEI 66 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTT----------TCEETTEEEEE-----GGGHHHHSTT-TCCE
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhc----------CCEECCEEEec-----HHHHHHHHhh-cccE
Confidence 3799999 89999999998754 4789887643332211 00112444443 3456666654 5776
Q ss_pred EEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccc
Q 040584 82 VIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATA 132 (347)
Q Consensus 82 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~ 132 (347)
++-+... ...+.+++.|.+++++.+..++....
T Consensus 67 ai~~i~~------------------~~~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 67 ALLTVPR------------------EAAQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp EEECSCH------------------HHHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred EEEeCCH------------------HHHHHHHHHHHHcCCCEEeecCceee
Confidence 6666421 12346788888889988887766543
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.26 E-value=0.024 Score=44.31 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=46.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|.| .|-||+.+++.|..-|.+|++.++...... ..... ..++.+++. .+|+
T Consensus 45 ~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------------~~~~~--------~~~l~~l~~--~~D~ 100 (199)
T d1dxya1 45 QQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGD-------------HPDFD--------YVSLEDLFK--QSDV 100 (199)
T ss_dssp GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSC-------------CTTCE--------ECCHHHHHH--HCSE
T ss_pred ceeeeeee-cccccccccccccccceeeeccCCccchhh-------------hcchh--------HHHHHHHHH--hccc
Confidence 47899999 999999999999999999999987654321 11111 224667777 4898
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
|+.+...
T Consensus 101 v~~~~pl 107 (199)
T d1dxya1 101 IDLHVPG 107 (199)
T ss_dssp EEECCCC
T ss_pred ceeeecc
Confidence 8887654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=94.17 E-value=0.041 Score=42.55 Aligned_cols=68 Identities=13% Similarity=0.011 Sum_probs=47.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
++++.|.| .|.||+.+++.|..-|.+|++.++........... . ....+++.+++. .+|+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~----------~-------~~~~~~l~~ll~--~sD~ 106 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY----------Q-------ATFHDSLDSLLS--VSQF 106 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH----------T-------CEECSSHHHHHH--HCSE
T ss_pred ccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcc----------c-------ccccCCHHHHHh--hCCe
Confidence 47899999 99999999999999999999998765533221110 0 011234677777 4788
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|+.+....
T Consensus 107 v~l~~plt 114 (191)
T d1gdha1 107 FSLNAPST 114 (191)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 88776543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.15 E-value=0.024 Score=47.74 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=31.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
+|+|+|+| +|+-|...+..|+++|++|.++.+++.
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 58999999 999999999999999999999977654
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.026 Score=43.69 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=46.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|.|.| .|.||+.+++.|..-|.+|+..++...... ... .. ..++.++++ ..|+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~--------------~~~--~~-----~~~l~ell~--~sDi 99 (188)
T d1sc6a1 44 GKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPL--------------GNA--TQ-----VQHLSDLLN--MSDV 99 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCC--------------TTC--EE-----CSCHHHHHH--HCSE
T ss_pred ceEEEEee-cccchhhhhhhcccccceEeeccccccchh--------------hhh--hh-----hhhHHHHHh--hccc
Confidence 47899998 999999999999999999999987544321 011 11 124677787 4799
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|+-++...
T Consensus 100 i~i~~plt 107 (188)
T d1sc6a1 100 VSLHVPEN 107 (188)
T ss_dssp EEECCCSS
T ss_pred eeecccCC
Confidence 98887544
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.10 E-value=0.052 Score=40.07 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=27.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC--CCeEEEEe
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG--GYKTVVVD 33 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~ 33 (347)
.|+|.|.|+||.||....+-+.+. .++|.++.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~ls 35 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALT 35 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEE
Confidence 589999999999999999999875 58888764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.05 E-value=0.043 Score=42.15 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=47.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
++++.|.| .|.||+.+++.|..-|.+|++.++.......... .+.. .++.+++. .+|+
T Consensus 44 ~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~-----------~~~~--------~~l~ell~--~sDi 101 (184)
T d1ygya1 44 GKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL-----------GIEL--------LSLDDLLA--RADF 101 (184)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH-----------TCEE--------CCHHHHHH--HCSE
T ss_pred ceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhhc-----------Ccee--------ccHHHHHh--hCCE
Confidence 47888888 9999999999999999999999876554322110 1111 23567777 4899
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
|+.+....
T Consensus 102 v~~~~Plt 109 (184)
T d1ygya1 102 ISVHLPKT 109 (184)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCC
Confidence 98887543
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.043 Score=39.06 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=53.8
Q ss_pred ceEEEEcCCC----------cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Q 040584 3 KNILVIGGVG----------YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEV 72 (347)
Q Consensus 3 ~~vlItGatG----------~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 72 (347)
+||+|+|+.. +-+.+.++.|.+.||+++.+..++....... .-..-+...--..+.+.+
T Consensus 8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~-----------d~aD~lYfePlt~e~v~~ 76 (127)
T d1a9xa3 8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP-----------EMADATYIEPIHWEVVRK 76 (127)
T ss_dssp CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG-----------GGSSEEECSCCCHHHHHH
T ss_pred CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh-----------hhcceeeeecCCHHHHHH
Confidence 7999999743 5688999999999999999987776532111 011223344456788888
Q ss_pred HHccCCCcEEEEccc
Q 040584 73 VFAGTKFDAVIHFAG 87 (347)
Q Consensus 73 ~~~~~~~d~vih~a~ 87 (347)
+++..++|.|+-..|
T Consensus 77 Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 77 IIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHCCSEEECSSS
T ss_pred HHHHhCcCCeEEEee
Confidence 888778999987766
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.089 Score=40.99 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=46.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEe-CCCchhHHH-HHHHHHhhccCCCCeEEEe-cCCCCHHHHHHHHccCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD-NLDNASEIA-VAKVKELAGYQGNNMTFHK-LDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~-r~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~ 79 (347)
|||+|.|. +-.|..+++.|++.|++|.++. +++.+.... ...+.++.. ..++.++. .++.+.+ +.+.++..++
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~--~~~i~~~~~~~~~~~~-~~~~i~~~~~ 76 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAA--ERGIPVYAPDNVNHPL-WVERIAQLSP 76 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHH--HHTCCEECCSCCCSHH-HHHHHHHTCC
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHH--HcCCcceecccccchh-hhhhhhhhcc
Confidence 67888874 5579999999999999997554 333211100 000111111 01344443 4555555 4455555689
Q ss_pred cEEEEccc
Q 040584 80 DAVIHFAG 87 (347)
Q Consensus 80 d~vih~a~ 87 (347)
|++|-...
T Consensus 77 Dlii~~g~ 84 (203)
T d2blna2 77 DVIFSFYY 84 (203)
T ss_dssp SEEEEESC
T ss_pred cceeeeec
Confidence 99888754
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.93 E-value=0.28 Score=37.51 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCC-----CeEEEEeCC
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGG-----YKTVVVDNL 35 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g-----~~v~~~~r~ 35 (347)
|.++|.|-| -|.||+.+.+.+++++ .+|.++...
T Consensus 1 M~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~ 39 (190)
T d1k3ta1 1 MPIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDM 39 (190)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEES
T ss_pred CCeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence 889999999 9999999999998764 356655433
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.73 E-value=0.03 Score=45.76 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=31.2
Q ss_pred CCce--EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 1 MAKN--ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 1 m~~~--vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
|+++ |+|+| .|..|..++..|+++|++|+++.+..
T Consensus 1 m~~~~DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 1 MKRHYEAVVIG-GGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp CCSEEEEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCccCCEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5553 99999 89999999999999999999998754
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.73 E-value=0.023 Score=40.63 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=31.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
++++|.| .|++|-.++..|.+.|.+|+++.|.+..
T Consensus 26 ~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 26 KKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp SEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 6899999 8999999999999999999999887654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.64 E-value=0.03 Score=40.07 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=31.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++++|.| .|+||..++..|.+.|.+|+++.+.+.
T Consensus 27 ~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 27 GKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp SEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 6899999 899999999999999999999987664
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.11 Score=36.44 Aligned_cols=75 Identities=21% Similarity=0.217 Sum_probs=52.3
Q ss_pred CceEEEEcCCC----------cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHH
Q 040584 2 AKNILVIGGVG----------YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALE 71 (347)
Q Consensus 2 ~~~vlItGatG----------~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (347)
.++|+|+|+.. +-+.+.++.|.+.||+++.+..++....-. ..-..-+...--..+.+.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd-----------~d~aD~lYfeplt~e~v~ 72 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD-----------YDTSDRLYFEPVTLEDVL 72 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS-----------TTSSSEEECCCCSHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC-----------hhhcCceEEccCCHHHHH
Confidence 37899999743 678899999999999999998777653210 111222333334577788
Q ss_pred HHHccCCCcEEEEccc
Q 040584 72 VVFAGTKFDAVIHFAG 87 (347)
Q Consensus 72 ~~~~~~~~d~vih~a~ 87 (347)
..++..++|.|+-..|
T Consensus 73 ~Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 73 EIVRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHHHCCSEEECSSS
T ss_pred HHHHHhCCCEEEeehh
Confidence 8877668998887755
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.44 E-value=0.048 Score=38.51 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=31.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
++|+|.| +|++|..++..|.+.|.+|.++.|.+.
T Consensus 23 ~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence 6899999 999999999999999999999988754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.38 E-value=0.12 Score=39.30 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=34.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHH
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAV 43 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~ 43 (347)
+|+|+| .|-.|.+-++.....|.+|.+++.+..+.+...
T Consensus 31 ~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~ 69 (183)
T d1l7da1 31 RVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVE 69 (183)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred EEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence 799999 899999999999999999999998887765443
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=93.34 E-value=0.3 Score=36.31 Aligned_cols=77 Identities=22% Similarity=0.152 Sum_probs=45.2
Q ss_pred ceEEEEcCCCcccHHHHHH-HHhC-----CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 3 KNILVIGGVGYIGSHTVLQ-LLLG-----GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~-L~~~-----g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
|||.|.|| |.+|..++-. |++. +.++.+++..+.+.....+....... ........ + +..+.++
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~---~~~~~~~t--~---~~~~~l~- 70 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK---DRFKVLIS--D---TFEGAVV- 70 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT---TSSEEEEC--S---SHHHHHT-
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc---cCceEEEe--c---CcccccC-
Confidence 68999997 5577666643 3321 35899998877665543333233221 12222221 1 2345666
Q ss_pred CCCcEEEEcccccc
Q 040584 77 TKFDAVIHFAGLKA 90 (347)
Q Consensus 77 ~~~d~vih~a~~~~ 90 (347)
++|+||..|+...
T Consensus 71 -~aDvVVita~~~~ 83 (162)
T d1up7a1 71 -DAKYVIFQFRPGG 83 (162)
T ss_dssp -TCSEEEECCCTTH
T ss_pred -CCCEEEEecccCC
Confidence 6899999999653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.31 E-value=0.14 Score=38.57 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=46.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeCCCchhHHHHHHHHHhhccCCCCe-EEEe-cCCC-CHHHHHHHHccCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDNLDNASEIAVAKVKELAGYQGNNM-TFHK-LDLR-DKAALEVVFAGTK 78 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~Dl~-d~~~~~~~~~~~~ 78 (347)
.+|+|.|+ |.+|...+..+...| ..|+++++++.+.+... ++ +. ..+. -+-. ......+.....+
T Consensus 30 ~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~------GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 30 STCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VF------GATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HT------TCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH----Hc------CCcEEEcCCCcchhHHHHHHhhccCC
Confidence 58999996 557777777777776 46888888776654332 22 22 2222 1211 1234445544447
Q ss_pred CcEEEEcccc
Q 040584 79 FDAVIHFAGL 88 (347)
Q Consensus 79 ~d~vih~a~~ 88 (347)
+|+||.+.|.
T Consensus 99 ~d~vid~~G~ 108 (175)
T d1cdoa2 99 VDFSLECVGN 108 (175)
T ss_dssp BSEEEECSCC
T ss_pred cceeeeecCC
Confidence 9999999984
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.25 E-value=0.3 Score=36.58 Aligned_cols=120 Identities=14% Similarity=0.064 Sum_probs=60.3
Q ss_pred CceEEEEcC-CCcccHHHHHHHHhCC----CeEEEEeCCCchhHH-HHHHHH-HhhccCCCCeEEEecCCCCHHHHHHHH
Q 040584 2 AKNILVIGG-VGYIGSHTVLQLLLGG----YKTVVVDNLDNASEI-AVAKVK-ELAGYQGNNMTFHKLDLRDKAALEVVF 74 (347)
Q Consensus 2 ~~~vlItGa-tG~iG~~l~~~L~~~g----~~v~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (347)
+|||.|+|| +.+.+..++..++... -++..++..+..... ...... .........+..... +| ..+++
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~--td---~~~al 75 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT--LD---RRRAL 75 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE--SC---HHHHH
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeec--CC---chhhc
Confidence 479999996 3344455555555532 377888776543211 111111 111101122222221 22 34566
Q ss_pred ccCCCcEEEEccccccCCcccc---Ccc---------------hhhhhhhhHHHHHHHHHHHcCCC-eEEEec
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQ---KPL---------------PYFDNNLTGTITLLEVMAAHGCK-NLVFSS 128 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~---~~~---------------~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 128 (347)
+ +.|+||..|+......... .+. ....-|+...+.+++..++.... .++.+|
T Consensus 76 ~--gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 76 D--GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp T--TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred C--CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 6 6899999999654211100 000 01123677777788888877544 444444
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.23 E-value=0.46 Score=35.56 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC-CeEEEEeC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG-YKTVVVDN 34 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g-~~v~~~~r 34 (347)
|++|.|-| .|.||+.+++.|+.++ .+|.++..
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd 33 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK 33 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence 57899998 8999999999998875 67776653
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.22 E-value=0.086 Score=41.86 Aligned_cols=68 Identities=21% Similarity=0.123 Sum_probs=45.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+++|+|-| .|-+|+++++.|.+.|..|++.+.......... ... +...+ +.+ +++.. .||+
T Consensus 39 g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~----~~~-----g~~~~-----~~~---~~~~~-~cDI 99 (230)
T d1leha1 39 GLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV----AEE-----GADAV-----APN---AIYGV-TCDI 99 (230)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HHH-----CCEEC-----CGG---GTTTC-CCSE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH----Hhc-----CCccc-----CCc---ccccc-cccE
Confidence 47899998 999999999999999999998865433322221 111 12221 122 23333 7999
Q ss_pred EEEcccc
Q 040584 82 VIHFAGL 88 (347)
Q Consensus 82 vih~a~~ 88 (347)
++-||-.
T Consensus 100 l~PcA~~ 106 (230)
T d1leha1 100 FAPCALG 106 (230)
T ss_dssp EEECSCS
T ss_pred ecccccc
Confidence 9999864
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.14 E-value=0.042 Score=42.22 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=31.9
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCch
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNA 38 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~ 38 (347)
.+||+|+| .|..|...+..|.++|+ +|+++.|++..
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 47999999 89999999999999998 59999887653
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.06 E-value=0.11 Score=39.01 Aligned_cols=76 Identities=21% Similarity=0.166 Sum_probs=49.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeE---EEecCC--CCHHHHHHHHcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMT---FHKLDL--RDKAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Dl--~d~~~~~~~~~~ 76 (347)
+|+|+|.|-+.-+|+.|+..|+++|..|+.+......... ....+. ....|+ ...+.+.+...
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~lk~~~~- 96 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-----------RGESLKLNKHHVEDLGEYSEDLLKKCSL- 96 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-----------SCCCSSCCCCEEEEEEECCHHHHHHHHH-
T ss_pred CCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-----------cccceeeeeeccccccccchhHHhhccc-
Confidence 4899999999999999999999999999877543211000 000000 001111 23556777776
Q ss_pred CCCcEEEEcccccc
Q 040584 77 TKFDAVIHFAGLKA 90 (347)
Q Consensus 77 ~~~d~vih~a~~~~ 90 (347)
..|+||..+|...
T Consensus 97 -~aDIvIsavG~p~ 109 (171)
T d1edza1 97 -DSDVVITGVPSEN 109 (171)
T ss_dssp -HCSEEEECCCCTT
T ss_pred -cCCEEEEccCCCc
Confidence 4899999988643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.059 Score=41.15 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=32.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
.|+|+|.| +|..|-..+..|.++||+|+++.+.+.
T Consensus 43 ~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCc
Confidence 47999999 899999999999999999999988654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.34 Score=42.17 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=47.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc-------------------hhHHHHHHHHHhhccCCCCeEEEec
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN-------------------ASEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
.||||.|+ |.+|+.+++.|...|. ++++++...- +.+.+.+.+..+.+ .-++..+..
T Consensus 38 ~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np--~v~i~~~~~ 114 (426)
T d1yovb1 38 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP--NCNVVPHFN 114 (426)
T ss_dssp CCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST--TCCCEEECS
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCC--CCceEeeec
Confidence 58999995 6699999999999997 6666654221 11222334444322 234555555
Q ss_pred CCCCHHHHHHHHccCCCcEEEEcc
Q 040584 63 DLRDKAALEVVFAGTKFDAVIHFA 86 (347)
Q Consensus 63 Dl~d~~~~~~~~~~~~~d~vih~a 86 (347)
++.+.. ..+++ ++|+||.+.
T Consensus 115 ~i~~~~--~~~~~--~~DlVi~~~ 134 (426)
T d1yovb1 115 KIQDFN--DTFYR--QFHIIVCGL 134 (426)
T ss_dssp CGGGBC--HHHHT--TCSEEEECC
T ss_pred cccchH--HHHHH--hcchheecc
Confidence 554433 35666 589999875
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=92.93 E-value=0.24 Score=36.65 Aligned_cols=74 Identities=18% Similarity=0.106 Sum_probs=39.7
Q ss_pred CC--ceEEEEcCCCcccHHHH-HHHHhC-CCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 1 MA--KNILVIGGVGYIGSHTV-LQLLLG-GYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 1 m~--~~vlItGatG~iG~~l~-~~L~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
|. .++.|.| +|.+|+.+. +.|.+. ..++.++ +|+......... .. .++.... ...+++.+..+
T Consensus 1 M~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a--~~------~~i~~~~---~~~d~l~~~~~ 68 (157)
T d1nvmb1 1 MNQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA--QR------MGVTTTY---AGVEGLIKLPE 68 (157)
T ss_dssp CCSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH--HH------TTCCEES---SHHHHHHHSGG
T ss_pred CCCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh--hh------cCCcccc---cceeeeeeccc
Confidence 55 4799999 999999754 555433 4577665 555443221111 11 1222221 12344444333
Q ss_pred cCCCcEEEEcc
Q 040584 76 GTKFDAVIHFA 86 (347)
Q Consensus 76 ~~~~d~vih~a 86 (347)
..++|+||.+.
T Consensus 69 ~~~iDiVf~AT 79 (157)
T d1nvmb1 69 FADIDFVFDAT 79 (157)
T ss_dssp GGGEEEEEECS
T ss_pred ccccCEEEEcC
Confidence 22589999874
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.89 E-value=0.037 Score=45.41 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
|+|+|+| +|.-|...+.+|.++|++|+++-+++.
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6799999 699999999999999999999976543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.77 E-value=0.22 Score=40.86 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=28.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN 34 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r 34 (347)
++|+|-| .|-+|+++++.|.+.|..|++++-
T Consensus 37 ktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 37 KTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence 6899999 899999999999999999998764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.63 E-value=0.053 Score=44.54 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=31.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
.|||+|+| +|.-|...+.+|.+.|++|.++.+++
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 48999999 99999999999999999999997654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.44 E-value=0.061 Score=43.30 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=31.7
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
.+||+|+| .|.-|..++..|.++|++|+++.|.+.
T Consensus 4 ~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVG-GSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 47899999 899999999999999999999987643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.41 E-value=0.04 Score=45.37 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
|+.+|+|.| .|..|..++..|.+.|++|.++.+.+.
T Consensus 1 mk~~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 1 MKTQVAIIG-AGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CBCSEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 666899999 789999999999999999999987653
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.34 E-value=0.088 Score=39.12 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=47.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcE
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDA 81 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (347)
+|+++|.| -|.+|+-++++|...|..|+++...|-.+- ... -.+.+. ..++++++ ..|+
T Consensus 23 Gk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~al--qA~--------mdGf~v--------~~~~~a~~--~aDi 81 (163)
T d1v8ba1 23 GKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAI--QAV--------MEGFNV--------VTLDEIVD--KGDF 81 (163)
T ss_dssp TSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHH--HHH--------TTTCEE--------CCHHHHTT--TCSE
T ss_pred CCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhH--HHH--------hcCCcc--------CchhHccc--cCcE
Confidence 47899999 999999999999999999999976543321 111 112222 23456776 4799
Q ss_pred EEEccccc
Q 040584 82 VIHFAGLK 89 (347)
Q Consensus 82 vih~a~~~ 89 (347)
+|-+.|-.
T Consensus 82 ~vTaTGn~ 89 (163)
T d1v8ba1 82 FITCTGNV 89 (163)
T ss_dssp EEECCSSS
T ss_pred EEEcCCCC
Confidence 99887743
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.047 Score=40.33 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=29.0
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDN 34 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r 34 (347)
+|+|+|+|| |.+|..-++.|++.|.+|+++..
T Consensus 13 gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 13 DKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp TCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 479999995 99999999999999999998853
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.38 Score=37.20 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=26.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~ 33 (347)
|||++.| ++..|..+.+.|++.||+|.++.
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~ 30 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVF 30 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEE
Confidence 6899998 66789999999999999998653
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.62 E-value=0.031 Score=42.69 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEe
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~ 33 (347)
|+.+|+|.| .|++|-.++..|.+.|+++.++.
T Consensus 2 m~a~VvIIG-gG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 2 LKAPVVVLG-AGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp CCSSEEEEC-CSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCEEEEC-ccHHHHHHHHHHHhcCCceEEEE
Confidence 778999999 99999999999999997765443
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=91.62 E-value=0.39 Score=38.25 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
+++|+|-| .|-+|+++++.|.+.|..|++++..
T Consensus 31 g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 31 GKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeecc
Confidence 47899998 9999999999999999999887643
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=91.35 E-value=0.43 Score=35.62 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=28.5
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
|||.|=| -|.||+.+.+.|..++.+|.++.-.
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd~ 32 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRGVEVALINDL 32 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECCC
Confidence 5788988 9999999999999999999888754
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.068 Score=44.39 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
|..|+|+| +|+-|..++++|+++|++|.++.+++.
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 46799999 999999999999999999999976543
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=90.86 E-value=0.63 Score=34.98 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=40.5
Q ss_pred CCc-eEEEEcCCCcccHH-HHHHHHhCC--CeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHc
Q 040584 1 MAK-NILVIGGVGYIGSH-TVLQLLLGG--YKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFA 75 (347)
Q Consensus 1 m~~-~vlItGatG~iG~~-l~~~L~~~g--~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (347)
|++ +|.|.| +|.+|+. .+..|.+.+ .++.++ +++..+.+...+.+ +...+. ++++++++
T Consensus 1 MkkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~---------~~~~~~------~~~~ell~ 64 (181)
T d1zh8a1 1 LRKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV---------GNPAVF------DSYEELLE 64 (181)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH---------SSCEEE------SCHHHHHH
T ss_pred CCCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc---------ccccee------eeeecccc
Confidence 653 899999 7999987 467776643 577755 44433332222221 111111 23556666
Q ss_pred cCCCcEEEEcc
Q 040584 76 GTKFDAVIHFA 86 (347)
Q Consensus 76 ~~~~d~vih~a 86 (347)
...+|+|+-+.
T Consensus 65 ~~~id~v~I~t 75 (181)
T d1zh8a1 65 SGLVDAVDLTL 75 (181)
T ss_dssp SSCCSEEEECC
T ss_pred ccccceeeccc
Confidence 55699999775
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.78 E-value=0.084 Score=43.93 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=30.4
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
|+|+|+| +|..|...+.+|.++|++|.++.+.+
T Consensus 31 kkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6899999 99999999999999999999997654
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.61 E-value=0.093 Score=36.79 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=28.0
Q ss_pred ceEEEEcCCCcccHHHHHHHHh---CCCeEEEEeCCCch
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL---GGYKTVVVDNLDNA 38 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~---~g~~v~~~~r~~~~ 38 (347)
++++|.| .|++|..++..|.+ +|.+|+++.|.+.-
T Consensus 21 ~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i 58 (117)
T d1aoga2 21 RRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEMI 58 (117)
T ss_dssp SEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred CeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence 6899999 59999999976654 56789999876543
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.65 Score=35.81 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=49.3
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEE-eCCCchhHHHH----HHHHHhhccCCCCeEEEecCCCCHHHHHHHHcc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVV-DNLDNASEIAV----AKVKELAGYQGNNMTFHKLDLRDKAALEVVFAG 76 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~-~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (347)
.|||+++| ++..+..+.+.|.+.|++|.++ .+++....... ........ ..++........+.+...+.++.
T Consensus 3 ~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (206)
T d1fmta2 3 SLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAE--EKGLPVFQPVSLRPQENQQLVAE 79 (206)
T ss_dssp CCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHH--HTTCCEECCSCSCSHHHHHHHHH
T ss_pred CcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhh--ccCccccccccccchhhHHHHhh
Confidence 48899998 6788999999999999998654 43322111100 00001100 12445555555555666677776
Q ss_pred CCCcEEEEccc
Q 040584 77 TKFDAVIHFAG 87 (347)
Q Consensus 77 ~~~d~vih~a~ 87 (347)
..+|++|-+..
T Consensus 80 ~~~d~~v~~~~ 90 (206)
T d1fmta2 80 LQADVMVVVAY 90 (206)
T ss_dssp TTCSEEEEESC
T ss_pred hcceEEEeecc
Confidence 67998877754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.35 E-value=0.15 Score=40.37 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=31.8
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
.++|+|+| .|+.|...+..|.++|++|+++.+.+.
T Consensus 49 ~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 49 KDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CceEEEEc-ccHHHHHHHHHHHHhccceeeEeeccc
Confidence 37899999 899999999999999999999987654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.10 E-value=0.13 Score=38.47 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=29.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCC--eEEEEeCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGY--KTVVVDNLD 36 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~--~v~~~~r~~ 36 (347)
+|+|+|.| .|+.|-.++..|.+.+. +|+++.+.+
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 58999999 89999999999999874 778887655
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.10 E-value=0.11 Score=41.00 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=31.3
Q ss_pred CCce--EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 1 MAKN--ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 1 m~~~--vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
|+.. |+|+| +|.-|...+.+|+++|++|.++.+.+.
T Consensus 2 m~~~yDviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 2 IDTDYDVIVLG-TGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp CCCBCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCcCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 5544 79999 999999999999999999999987653
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.77 E-value=0.32 Score=32.11 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=26.9
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
|||||.| +|.=-.+|+..|.+..++++++.-+
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~~v~~~pGN 32 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQGYEVHFYPGN 32 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCeEEEecCC
Confidence 7999999 5656899999999999999887433
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.28 Score=44.02 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=62.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCch-------------------hHHHHHHHHHhhccCCCCeEEEec
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDNA-------------------SEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
.+|+|.|+ |.+|..+++-|...|. .+++++...-. .+...+.+.++.+ .-.+..+..
T Consensus 26 s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp--~v~i~~~~~ 102 (529)
T d1yova1 26 AHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNS--DVSGSFVEE 102 (529)
T ss_dssp CEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCT--TSBCCEESS
T ss_pred CCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCC--CCcEEEEcC
Confidence 58999995 7799999999999995 56666432211 1112223333311 112223332
Q ss_pred CCCCHHHHH----HHHccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 63 DLRDKAALE----VVFAGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 63 Dl~d~~~~~----~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
+ ...+. ..+. ++|+||.+.. |......+-+.|++.++ .+|+++|.+.||.
T Consensus 103 ~---~~~~~~~~~~~~~--~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~i-p~i~~~~~G~~G~ 156 (529)
T d1yova1 103 S---PENLLDNDPSFFC--RFTVVVATQL-----------------PESTSLRLADVLWNSQI-PLLICRTYGLVGY 156 (529)
T ss_dssp C---HHHHHHSCGGGGG--GCSEEEEESC-----------------CHHHHHHHHHHHHHHTC-CEEEEEEETTEEE
T ss_pred C---chhhhhhHHHHhc--CCCEEEECCC-----------------CHHHHHHHHHHHHHcCC-CEEEEeccCCEEE
Confidence 2 22221 2344 4788886632 33334467788888877 6999998888764
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=89.40 E-value=0.067 Score=39.46 Aligned_cols=83 Identities=10% Similarity=-0.037 Sum_probs=42.6
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccC---CCCeEEEecCCCCHHHHHHHHccC--CC
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQ---GNNMTFHKLDLRDKAALEVVFAGT--KF 79 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~--~~ 79 (347)
|-++| +|.+|+++++.|.+.++.+.+..|+..+.+.+.+......... -...+++..-+.| +.+.+++.+. .-
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i~~v~~~l~~~~ 79 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYIKTVANHLNLGD 79 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTHHHHHTTTCCSS
T ss_pred EEEEe-CcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc-hhhhHHHhhhcccc
Confidence 34677 9999999999886644444678887666655544332111110 1122233333333 3455555432 23
Q ss_pred cEEEEccccc
Q 040584 80 DAVIHFAGLK 89 (347)
Q Consensus 80 d~vih~a~~~ 89 (347)
.+|||+++..
T Consensus 80 ~ivi~~s~~~ 89 (153)
T d2i76a2 80 AVLVHCSGFL 89 (153)
T ss_dssp CCEEECCSSS
T ss_pred eeeeecccch
Confidence 5678887643
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.21 Score=41.14 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.9
Q ss_pred CCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 10 GVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 10 atG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
.||-.|.+|++.|+.+|++|+.+.+..
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~~ 70 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRAR 70 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecCC
Confidence 479999999999999999999887553
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=88.55 E-value=0.19 Score=40.81 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=28.8
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
|+|+| .|..|..++..|+++|++|+++.+..
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 89999 89999999999999999999998754
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.52 E-value=0.21 Score=41.87 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCC--CeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGG--YKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g--~~v~~~~r~~~ 37 (347)
+|+|+|+| +|.-|...+..|+++| ++|+++-|++.
T Consensus 4 ~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 4 IRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 47899999 8999999999999876 69999987754
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.50 E-value=0.19 Score=38.48 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=28.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC--CCeEEEEeCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG--GYKTVVVDNLD 36 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~--g~~v~~~~r~~ 36 (347)
|||+|.| .|++|-.++..|.+. +.+|+++.|.+
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 7899999 789999999999886 56888887754
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.44 E-value=0.18 Score=38.00 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=28.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
+++|+|.| .|++|-.++..|.+.|.+|.++.+.+
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEecC
Confidence 36899999 99999999999999998876654433
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.83 E-value=0.79 Score=34.44 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=43.5
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKF 79 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (347)
+++|.|+| +|.+|+..++.|... +.+|+++ +++..+.....+ ..+. .....+ .++++++++...+
T Consensus 1 kiki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----~~~~-~~~~~~-------~~~~~~ll~~~~i 67 (184)
T d1ydwa1 1 QIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----ANNY-PESTKI-------HGSYESLLEDPEI 67 (184)
T ss_dssp CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----HTTC-CTTCEE-------ESSHHHHHHCTTC
T ss_pred CeEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----cccc-ccceee-------cCcHHHhhhcccc
Confidence 36899999 789999999999875 6788765 444333322221 1110 111122 2335566655579
Q ss_pred cEEEEcc
Q 040584 80 DAVIHFA 86 (347)
Q Consensus 80 d~vih~a 86 (347)
|+|+-+.
T Consensus 68 D~v~I~t 74 (184)
T d1ydwa1 68 DALYVPL 74 (184)
T ss_dssp CEEEECC
T ss_pred ceeeecc
Confidence 9999765
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=87.65 E-value=0.37 Score=34.58 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.2
Q ss_pred ceEEEEcCC---CcccHHHHHHHHhCCCeEEEEeC
Q 040584 3 KNILVIGGV---GYIGSHTVLQLLLGGYKTVVVDN 34 (347)
Q Consensus 3 ~~vlItGat---G~iG~~l~~~L~~~g~~v~~~~r 34 (347)
++|.|.||| +-.|..+.+.|++.||.++.+.-
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~ 48 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNP 48 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECG
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEe
Confidence 689999998 66899999999999999988753
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.84 Score=33.49 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=51.7
Q ss_pred cccHHHHHHHHhC-CCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEEccccccC
Q 040584 13 YIGSHTVLQLLLG-GYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAV 91 (347)
Q Consensus 13 ~iG~~l~~~L~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~ 91 (347)
-||..++..+++. ||+|+-++.+-+ ++++.+++.+.++|+|.-++-...
T Consensus 20 diG~~iv~~~l~~~G~~Vi~LG~~~p-----------------------------~e~~~~~~~~~~~d~i~lS~l~~~- 69 (156)
T d3bula2 20 DIGKNIVGVVLQCNNYEIVDLGVMVP-----------------------------AEKILRTAKEVNADLIGLSGLITP- 69 (156)
T ss_dssp CHHHHHHHHHHHTTTCEEEECCSSBC-----------------------------HHHHHHHHHHHTCSEEEEECCSTH-
T ss_pred hHHHHHHHHHHHHCCCEEEECCCCCC-----------------------------HHHHHHHHHhhCCCEEEEeccccc-
Confidence 5899999988885 899987654321 344555555557999988875432
Q ss_pred CccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 92 GESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 92 ~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
.+.....+++.+++.+.+..|+++..
T Consensus 70 -------------~~~~~~~~~~~l~~~g~~~~vivGG~ 95 (156)
T d3bula2 70 -------------SLDEMVNVAKEMERQGFTIPLLIGGA 95 (156)
T ss_dssp -------------HHHHHHHHHHHHHHTTCCSCEEEEST
T ss_pred -------------chHHHHHHHHHHHhccccceEEEecc
Confidence 45667788999999886544555543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.32 E-value=0.29 Score=40.47 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.1
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
..||+|+| +|.-|-..+..|.++|++|.++-.++
T Consensus 5 ~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35799999 99999999999999999999986543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.20 E-value=0.036 Score=44.09 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.6
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTV 30 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~ 30 (347)
|||+|+| .|.+|...+..|+++|++|+
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCce
Confidence 6899999 89999999999999998654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=86.99 E-value=0.79 Score=33.85 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=25.3
Q ss_pred CceEEEEcCCCcccHH-HHHHHHhC-CCeEEEEeCCCchhH
Q 040584 2 AKNILVIGGVGYIGSH-TVLQLLLG-GYKTVVVDNLDNASE 40 (347)
Q Consensus 2 ~~~vlItGatG~iG~~-l~~~L~~~-g~~v~~~~r~~~~~~ 40 (347)
.++|.|+| +|.+|+. ....|.+. +.++.++++++....
T Consensus 1 tirvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~ 40 (167)
T d1xeaa1 1 SLKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLG 40 (167)
T ss_dssp CEEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHH
T ss_pred CeEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHH
Confidence 36899999 6888866 55666555 567776665544433
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.91 E-value=0.34 Score=33.86 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEe
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~ 33 (347)
|++||||.=-.-.+-..+...|.+.||+|..+.
T Consensus 1 M~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~ 33 (121)
T d1mvoa_ 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITAS 33 (121)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEC
Confidence 889999999999999999999999999998763
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.89 E-value=0.35 Score=37.91 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCcccH-----HHHHHHHhCCCeEEEEeCC
Q 040584 1 MAKNILVIGGVGYIGS-----HTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 1 m~~~vlItGatG~iG~-----~l~~~L~~~g~~v~~~~r~ 35 (347)
|++.|.|+|+.|.+|+ +|+..|+++|++|.+++-.
T Consensus 1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D 40 (237)
T d1g3qa_ 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 8899999999999997 4677788899999998743
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=86.77 E-value=0.4 Score=36.22 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=45.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhc---------cCCCCeEEEecCCCCHHHHHHH
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAG---------YQGNNMTFHKLDLRDKAALEVV 73 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~ 73 (347)
.+||..| +|. |. .+..|+++|++|++++.++...+...+..+.... .....+.++.+|..+.....
T Consensus 22 ~rvLd~G-CG~-G~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-- 96 (201)
T d1pjza_ 22 ARVLVPL-CGK-SQ-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD-- 96 (201)
T ss_dssp CEEEETT-TCC-SH-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH--
T ss_pred CEEEEec-CcC-CH-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc--
Confidence 6899999 444 55 5557888899999999876655544433322110 01334567777776643211
Q ss_pred HccCCCcEEEEcc
Q 040584 74 FAGTKFDAVIHFA 86 (347)
Q Consensus 74 ~~~~~~d~vih~a 86 (347)
.. ..|.|+-..
T Consensus 97 ~~--~~D~i~~~~ 107 (201)
T d1pjza_ 97 IG--HCAAFYDRA 107 (201)
T ss_dssp HH--SEEEEEEES
T ss_pred cc--ceeEEEEEe
Confidence 12 357666543
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.41 E-value=0.29 Score=37.84 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.7
Q ss_pred CceEEEEcCCCcccH-----HHHHHHHhCCCeEEEEe
Q 040584 2 AKNILVIGGVGYIGS-----HTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 2 ~~~vlItGatG~iG~-----~l~~~L~~~g~~v~~~~ 33 (347)
.|+++|||-...+|+ +|+..|.++|++|.+++
T Consensus 1 ~~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 378999994338886 57888999999998874
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=86.37 E-value=0.38 Score=33.33 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=28.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHh---CCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL---GGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~---~g~~v~~~~r~~~ 37 (347)
++++|.| .|++|-.++..|.+ .|.+|+++.|.+.
T Consensus 19 ~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 19 KRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp SEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CeEEEEC-CChHHHHHHHHhHhhcccccccceeccccc
Confidence 6899999 89999999987654 4889999988754
|
| >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Lac-repressor (lacR) core (C-terminal domain) species: Escherichia coli [TaxId: 562]
Probab=86.28 E-value=5 Score=31.56 Aligned_cols=110 Identities=17% Similarity=0.074 Sum_probs=61.7
Q ss_pred cccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEEEEccccccCC
Q 040584 13 YIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAVIHFAGLKAVG 92 (347)
Q Consensus 13 ~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~a~~~~~~ 92 (347)
-+-..+-+.+.+.||++.+........+...+.+..+....-.++ ++..+..+.+.+...+...++-+|+.....
T Consensus 17 ~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgi-Il~~~~~~~~~~~~~~~~~~iPvV~~d~~~---- 91 (271)
T d1jyea_ 17 QIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGL-IINYPLDDQDAIAVEAACTNVPALFLDVSD---- 91 (271)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCE-EEESCCCHHHHHHHHHHTTTSCEEESSSCT----
T ss_pred HHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEE-EeccccCchhHHHHHHHhcCCCeeeeeccc----
Confidence 355677788888999997765433333333344444433222233 334444444444444443355556554211
Q ss_pred ccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEecc
Q 040584 93 ESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSS 129 (347)
Q Consensus 93 ~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 129 (347)
. .......-.|..+...+++.+.+.|.+++.++++
T Consensus 92 ~--~~~~~V~~D~~~~~~~~~~~L~~~G~~~i~~i~~ 126 (271)
T d1jyea_ 92 Q--TPINSIIFSHEDGTRLGVEHLVALGHQQIALLAG 126 (271)
T ss_dssp T--SSSCEEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred c--ccCCccccchhhccccceeeeecccccccccccc
Confidence 1 1111233447788888888888888889998874
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.24 E-value=0.39 Score=38.50 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~~ 37 (347)
++|+|+| .|.-|..++..|.+.|. .|.++.|.+.
T Consensus 2 ~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAG-AGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 5899999 89999999999999995 8888887654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=86.23 E-value=0.28 Score=40.21 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=29.2
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD 36 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~ 36 (347)
.+|+|+| .|.+|..++.+|+++|. +|.++.|..
T Consensus 2 ~dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 4699999 89999999999999996 699998764
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.85 E-value=0.36 Score=35.57 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=26.6
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
||+|.| .|++|-.++..|. ++.+|+++.+.+
T Consensus 2 rVvIIG-gG~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEEC-CcHHHHHHHHHHH-cCCCEEEEeccc
Confidence 799999 8999999999985 578999987654
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.82 E-value=1.4 Score=34.59 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=27.2
Q ss_pred CceEEEEcCCCcccHHHHHHHHh-CCCeEEEEeC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLL-GGYKTVVVDN 34 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~-~g~~v~~~~r 34 (347)
+++|+|-| .|-+|+++++.|.+ .|..|++++-
T Consensus 31 g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd 63 (234)
T d1b26a1 31 KATVAVQG-FGNVGQFAALLISQELGSKVVAVSD 63 (234)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence 46888888 99999999999975 5999987753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.35 E-value=0.33 Score=38.36 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=28.8
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCC-eEEEEeCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGY-KTVVVDNLD 36 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~-~v~~~~r~~ 36 (347)
+|+|+| +|.-|...+..|.++|+ +|+++.+++
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 799999 89999999999999996 799997654
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.83 E-value=0.43 Score=34.17 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.3
Q ss_pred ceEEEEcCCCcccHHHHHHHHh----CCCeEEEEeCCCc
Q 040584 3 KNILVIGGVGYIGSHTVLQLLL----GGYKTVVVDNLDN 37 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~----~g~~v~~~~r~~~ 37 (347)
++++|.| .||+|-.++..|.+ .|.+|+.+.+.+.
T Consensus 38 k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 38 KSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 6899998 79999999998863 5899999877654
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=84.66 E-value=1 Score=34.25 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=53.5
Q ss_pred CceEEEEcCCCc-------------ccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHH
Q 040584 2 AKNILVIGGVGY-------------IGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKA 68 (347)
Q Consensus 2 ~~~vlItGatG~-------------iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 68 (347)
+++|+++|-|=. .|..|.++|-..+++|+-...+......... ..
T Consensus 3 ~~ti~~~GDS~~~g~~~~~~~~~~Gw~~~L~~~l~~~~~~v~N~gi~G~t~~~~~~----------------------~~ 60 (208)
T d2o14a2 3 NRTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHTFQVRNMASGGQIARGFRN----------------------DG 60 (208)
T ss_dssp CCEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCTTTCEEEECCCTTCCHHHHHH----------------------SS
T ss_pred CCEEEEEEcccccCcCCCCCCCCCCHHHHHHHHhCCCceEEEeCeechhhhccHhh----------------------hh
Confidence 689999997722 2355555555567777655443332211100 01
Q ss_pred HHHHHHccC-CCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccc
Q 040584 69 ALEVVFAGT-KFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSA 130 (347)
Q Consensus 69 ~~~~~~~~~-~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~ 130 (347)
.+.+.+... ..|+||-+.|............+.+..| ...+++.+++.+. ++|.++..
T Consensus 61 ~~~~~~~~~~~~D~vvi~~G~ND~~~~~~~~~~~~~~~---l~~li~~~~~~~~-~~vl~~~~ 119 (208)
T d2o14a2 61 QLEAILKYIKPGDYFMLQLGINDTNPKHKESEAEFKEV---MRDMIRQVKAKGA-DVILSTPQ 119 (208)
T ss_dssp HHHHHHTTCCTTCEEEEECCTGGGCGGGCCCHHHHHHH---HHHHHHHHHTTTC-EEEEECCC
T ss_pred hHHHHHHhcCCCCEEEEEcCCCcccccccccHHHHHHH---HHHHHHHHHhcCC-ceeecccc
Confidence 223333322 4699998888654322222233334333 3456667776665 56666554
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.63 E-value=1.2 Score=35.25 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=27.6
Q ss_pred CceEEEEcCCCcccHHHHHHHHhC-CCeEEEEeCC
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLG-GYKTVVVDNL 35 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r~ 35 (347)
+++|+|-| .|-+|+++++.|.+. |..|+++.-.
T Consensus 32 g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239)
T d1gtma1 32 GKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSDS 65 (239)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHhcCcceeecccc
Confidence 47899998 799999999999864 9999887644
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=84.60 E-value=0.37 Score=40.65 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=28.5
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
-|+|+| +|+-|..++.+|.++|+.|.++-+.
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 378999 9999999999999999999999774
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=84.46 E-value=0.47 Score=40.70 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=24.9
Q ss_pred ceEEEEcC------CCccc---HHHHHHHHhCCCeEEEEe
Q 040584 3 KNILVIGG------VGYIG---SHTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 3 ~~vlItGa------tG~iG---~~l~~~L~~~g~~v~~~~ 33 (347)
||||+++. +|.+| ..|++.|.+.||+|+++.
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvt 40 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 40 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 78888774 46665 667999999999998876
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=83.84 E-value=4.9 Score=27.53 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCc-eEEEEcCCCcccHHHHHHHHhCCCeEEEEe
Q 040584 1 MAK-NILVIGGVGYIGSHTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 1 m~~-~vlItGatG~iG~~l~~~L~~~g~~v~~~~ 33 (347)
|.| +|||.--.-.+...+.+.|.+.||+|..+.
T Consensus 1 M~k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~ 34 (123)
T d1krwa_ 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFE 34 (123)
T ss_dssp CCCCEEEEESSSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeC
Confidence 654 799999999999999999999999998764
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=83.83 E-value=1.3 Score=32.45 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=39.5
Q ss_pred CceEEEEcCCCcccHH-HHHHHHhC-CCeEEEE-eCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCC
Q 040584 2 AKNILVIGGVGYIGSH-TVLQLLLG-GYKTVVV-DNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTK 78 (347)
Q Consensus 2 ~~~vlItGatG~iG~~-l~~~L~~~-g~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (347)
+++|.|.| +|.+|+. ....|.+. +.+++++ +++..+.....+.+ ++. .. +.++.+.+ .
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~---------~~~-----~~--~~~~~l~~--~ 61 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW---------RIP-----YA--DSLSSLAA--S 61 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH---------TCC-----BC--SSHHHHHT--T
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc---------ccc-----cc--ccchhhhh--h
Confidence 46899999 7999975 56666654 6788754 56555544333322 111 11 12344455 5
Q ss_pred CcEEEEcc
Q 040584 79 FDAVIHFA 86 (347)
Q Consensus 79 ~d~vih~a 86 (347)
+|+|+-+.
T Consensus 62 ~D~V~I~t 69 (164)
T d1tlta1 62 CDAVFVHS 69 (164)
T ss_dssp CSEEEECS
T ss_pred cccccccc
Confidence 99998775
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=83.37 E-value=4.1 Score=30.14 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=25.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhC----CCeEEEEeC
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLG----GYKTVVVDN 34 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~----g~~v~~~~r 34 (347)
+||.|-| -|.||+.+.+.++++ ..+|.++.-
T Consensus 2 ikigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd 36 (173)
T d1obfo1 2 IRVAING-YGRIGRNILRAHYEGGKSHDIEIVAIND 36 (173)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred eEEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence 6899999 999999999999864 356766654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=83.08 E-value=0.55 Score=39.43 Aligned_cols=30 Identities=30% Similarity=0.524 Sum_probs=27.9
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCC
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNL 35 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~ 35 (347)
|+|+| +|.-|.-++.+|++.|++|.++-+.
T Consensus 7 viIVG-sG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 7 VVIVG-SGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHhhCCCeEEEEecC
Confidence 89999 9999999999999999999999654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.82 E-value=0.53 Score=38.99 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=28.5
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCC
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLD 36 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~ 36 (347)
|+|+| +|.-|...+..|+++|++|+++.+++
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 78999 89999999999999999999997654
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=82.46 E-value=0.6 Score=36.77 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 1 MAKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 1 m~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
|.--|+|+| .|..|...+..|.++|++|.++.+.+..
T Consensus 1 M~yDViIIG-aG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 1 MHYDVIVIG-GGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CCCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcCCEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 555699999 8999999999999999999999876553
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=81.95 E-value=4.6 Score=34.16 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=62.4
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchh-HHHHHHHHHhhccCCCCeEEEecCCCCHH---HHHHHHccCCC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNAS-EIAVAKVKELAGYQGNNMTFHKLDLRDKA---ALEVVFAGTKF 79 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~---~~~~~~~~~~~ 79 (347)
+|+=++ ...-|-...+.|++.|.+|+-+-+..... ......+.... .-+-+.+..||.+++ .+.++++ .+
T Consensus 13 rVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~---n~~K~si~ldl~~~~G~~~~~~Lv~--~a 86 (402)
T d1xk7a1 13 RVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLS---RRNLHALSLNIFKDEGREAFLKLME--TT 86 (402)
T ss_dssp EEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHH---TTTCEEEEECTTSHHHHHHHHHHHT--TC
T ss_pred EEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHh---CCCCeEEEEeCcCHHHHHHHHHHHh--hc
Confidence 444444 34448888889999999999887543111 11101111111 234567889998876 4556677 69
Q ss_pred cEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEeccccccCC
Q 040584 80 DAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSSSATAYGW 135 (347)
Q Consensus 80 d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~~yg~ 135 (347)
|+||++--+...... .+ =.+.+++.+ +++||+|-+. ||.
T Consensus 87 Dv~i~n~rpg~~~~l----------Gl-----~~~~L~~~n-P~lI~~sisg-fG~ 125 (402)
T d1xk7a1 87 DIFIEASKGPAFARR----------GI-----TDEVLWQHN-PKLVIAHLSG-FGQ 125 (402)
T ss_dssp SEEEEECSSSHHHHT----------TC-----CHHHHHHHC-TTCEEEEEES-SCS
T ss_pred CCceeeecccccccc----------cc-----cccchhhcc-ccccceeeec-ccC
Confidence 999999643211000 00 024455553 4789888654 664
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=81.37 E-value=0.69 Score=37.98 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=29.9
Q ss_pred eEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCc
Q 040584 4 NILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~ 37 (347)
.|+|+| .|+.|-.++..|.+.|.+|.++.+.+.
T Consensus 9 dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVG-AGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 589999 899999999999999999999987654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=81.25 E-value=0.66 Score=36.82 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCce--EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCch
Q 040584 1 MAKN--ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNA 38 (347)
Q Consensus 1 m~~~--vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~ 38 (347)
|.++ |+|+| .|--|...+..|.++|++|.++.+.+..
T Consensus 1 M~~~~DViIIG-aG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 1 MSQYSENIIIG-AGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CEEECSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCCCcEEEEC-cCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5543 99999 8999999999999999999999887654
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.06 E-value=5 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=27.1
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEe
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVD 33 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~ 33 (347)
|||||.=-.-.+...+...|.+.||+|..+.
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a~ 31 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAF 31 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEC
Confidence 6789998888899999999999999998763
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=81.01 E-value=0.74 Score=36.89 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=28.7
Q ss_pred CceEEEEcCCCcccHH-----HHHHHHhCCCeEEEEeCCCc
Q 040584 2 AKNILVIGGVGYIGSH-----TVLQLLLGGYKTVVVDNLDN 37 (347)
Q Consensus 2 ~~~vlItGatG~iG~~-----l~~~L~~~g~~v~~~~r~~~ 37 (347)
|++|.|+| -|.+|+. |+..|+++|++|.+++-.+.
T Consensus 1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 58899998 9999975 55688999999999986543
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=80.95 E-value=5.5 Score=29.58 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=31.5
Q ss_pred EEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEec
Q 040584 5 ILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKL 62 (347)
Q Consensus 5 vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (347)
+|||||++.==+..+++|+..+-+++-+........+..+.+.......+.++..+..
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT~~~~D~em~~RI~~Hr~rR~~~w~tiE~ 59 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAEC 59 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCCC------CHHHHHHHTSCTTEEEECC
T ss_pred EEEECCCCccHHHHHHHHHhcCCCcEEEEccCCCCHHHHHHHHHHHhcCcCCCEEecc
Confidence 7999999886678999998877666533333333333333333222223455555543
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.77 E-value=6.7 Score=28.29 Aligned_cols=110 Identities=10% Similarity=0.095 Sum_probs=60.4
Q ss_pred CceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCC---CCHHHHHHHH----
Q 040584 2 AKNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDL---RDKAALEVVF---- 74 (347)
Q Consensus 2 ~~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl---~d~~~~~~~~---- 74 (347)
+++|.|++.+|..|.-++-.+.+.|-++--+ .+...+.+.++.+.....- -..|+ .+.+.+.+++
T Consensus 3 G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l------~~~t~~~L~~~lp~~~~~~--NPlD~~~~~~~~~~~~~l~~~~ 74 (163)
T d2csua3 3 GNKVAIMTNAGGPGVLTADELDKRGLKLATL------EEKTIEELRSFLPPMAAVK--NPVDMIASARGEDYYRTAKLLL 74 (163)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHTTTCEECCC------CHHHHHHHHHHSCTTCEES--SEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECChHHHHHHHHHHHHcCCccCCC------CHHHHHHHHHhCCCcccCC--CcccccCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999777443 2333445544433111000 11233 3455555544
Q ss_pred ccCCCcEEEEccccccCCccccCcchhhhhhhhHHHHHHHHHHHcCCCeEEEec
Q 040584 75 AGTKFDAVIHFAGLKAVGESVQKPLPYFDNNLTGTITLLEVMAAHGCKNLVFSS 128 (347)
Q Consensus 75 ~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~S 128 (347)
+.-++|.|+......... .... ......+++++++.+.++.|+++
T Consensus 75 ~d~~vd~v~v~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~kpv~~~ 119 (163)
T d2csua3 75 QDPNVDMLIAICVVPTFA--GMTL-------TEHAEGIIRAVKEVNNEKPVLAM 119 (163)
T ss_dssp HSTTCSEEEEEEECCCST--TCCS-------SHHHHHHHHHHHHHCCCCCEEEE
T ss_pred cCCCcCEEEEeeccCCcc--cccH-------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 344788876554332211 1111 12234567777766544444333
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.33 E-value=4 Score=28.06 Aligned_cols=65 Identities=25% Similarity=0.235 Sum_probs=43.7
Q ss_pred ceEEEEcCCCcccHHHHHHHHhCCCeEEEEeCCCchhHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHccCCCcEE
Q 040584 3 KNILVIGGVGYIGSHTVLQLLLGGYKTVVVDNLDNASEIAVAKVKELAGYQGNNMTFHKLDLRDKAALEVVFAGTKFDAV 82 (347)
Q Consensus 3 ~~vlItGatG~iG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (347)
.+|+|-|-||..|+.-++++++-|-+|.+-..+...-. .+ .++-=.++++++.++.++|+=
T Consensus 8 trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~---------------~~----~giPVf~tV~eAv~~~~~d~S 68 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM---------------EV----LGVPVYDTVKEAVAHHEVDAS 68 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---------------EE----TTEEEESSHHHHHHHSCCSEE
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCc---------------EE----ECCchHhhHHHHHHhcCCeEE
Confidence 48999999999999999999999999876554333211 11 112123456677766667765
Q ss_pred EEcc
Q 040584 83 IHFA 86 (347)
Q Consensus 83 ih~a 86 (347)
+-..
T Consensus 69 vIfV 72 (121)
T d1oi7a1 69 IIFV 72 (121)
T ss_dssp EECC
T ss_pred EEee
Confidence 5554
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=80.06 E-value=5.9 Score=28.99 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=25.0
Q ss_pred eEEEEcCCCcccHHHHHHHHhC-CCeEEEEeC
Q 040584 4 NILVIGGVGYIGSHTVLQLLLG-GYKTVVVDN 34 (347)
Q Consensus 4 ~vlItGatG~iG~~l~~~L~~~-g~~v~~~~r 34 (347)
||.|=| -|.||+.+.+.++++ ..+|.++.-
T Consensus 2 kigING-fGRIGR~v~R~~~~~~~~~iv~INd 32 (166)
T d2b4ro1 2 KLGING-FGRIGRLVFRAAFGRKDIEVVAIND 32 (166)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred eEEEEC-CCHHHHHHHHHHhhCCCcEEEEECC
Confidence 677887 999999999999976 578877754
|