Citrus Sinensis ID: 040607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
CCSFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSHGVNQRQLM
Secondary Structure (PSIPRED)
cccccHHHHccccccEEEccccccccccHHHHHHcccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccccEEEccccccEEEcccccccccccccEEEccccEEEEEccccccccccHHHHHHHcccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEEcccEEEEEccccccccccccEEEccccEEEEEccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccEEEEcccHHHHcccccccEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccccccccccccccHHHHHccccccEEEccccccccccHHHHHccccccEEEccccccEEccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHccccccEEEEcccccccccccHHHcccccccccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHcccccccEEEEccccccccccHHHHcccHHHHHHHHcccccccccHHHccccccEEEEEccccccccccHHHHHHcHcccEEEcccccccccccHHHccccccEEEEEccccccccccccccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccHHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHcccccccHHHHccccccEEEcccccccccccHHHHccccHHHcc
Coil and Loop (DISEMBL)
CCSFLIelhnltnlenltldnsFFHVSLLQSIAVFGPWMVQCFIgframdgtalDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLqelhvdhnnlygvppwclgnmtsLQVLNIssnqltgnisspplkhlksiqelklsnnyfqipislgplynhsnlkifdsennqiyaqteshsltpkfqlnsiilshgsgvtfpkflyhqhdlkhvnlshinlrgefpnwlsennTKLQTLVQVNNYLSgifqmpkharrhltyldvsdnffqvhipvgnmkslsvldlsknrligkiperLAMGCFSLRYLVLsnnkmkghifskkinltnlwrlqldgnhfigeipeslsncnlfgglylsdnhlsgkiprwlgnlsvsedvimpnnhlegpipmefcqLNFLQILDISkknifgslpscfnpfsikqgkplnsmsgldlscnkltgeiplrignltrIHTLNVSHNKLTGLILSTFsnlkqtesldlsynkltgkippqlVELNALAVFSVAhnklsgktpdWVAQFATfngssydgnpflssscngeddslidmnNFYIIFAVSYVIVILGIDgvlyvnpysgrrWFYFVESWMTTCYHFALNNLATLIVIIRSHgvnqrqlm
Flexible Loop (DISEMBL)
CCSFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSHGVNQRQLM
Low Complexity Region (SEG)
CCSFlielhnltnlenltldnSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKsmtslkllslsnsrlNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSHGVNQRQLM
Disordered region (IsUnstruct)
*CSFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNI****LKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSH********
Disordered Region (DISOPRED)
CCSFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSS*************NFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSHG****QLM
Disordered Region (DISEMBL)
CCSFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSHGVNQRQLM
Disordered Region (DISPRO)
CCSFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSHGVNQ***M
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CCSFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATLIVIIRSHGVNQRQLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	629	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.761	0.383	0.304	2e-41
Q9LRT1	1016	Probably inactive leucine	no	no	0.769	0.476	0.312	6e-41
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.798	0.491	0.306	7e-41
Q9LHP4	1141	Receptor-like protein kin	no	no	0.737	0.406	0.293	8e-40
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.807	0.493	0.280	1e-39
C0LGV1	1135	LRR receptor-like serine/	no	no	0.697	0.386	0.327	5e-39
O49318	1124	Probable leucine-rich rep	no	no	0.740	0.414	0.299	1e-38
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.879	0.441	0.288	1e-38
Q6XAT2	967	LRR receptor-like serine/	no	no	0.801	0.521	0.287	1e-37
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.702	0.401	0.297	1e-37

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 177/582 (30%), Positives = 260/582 (44%), Gaps = 103/582 (17%)

Query: 61  VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
            + ++TSL+ L L +++L G I  Q L   V+++ L +  N L G  P  LGN+ +LQ+L
Sbjct: 114 ALSNLTSLESLFLFSNQLTGEIPSQ-LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQML 172

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPISLG------------------- 159
            ++S +LTG I S  L  L  +Q L L +NY +  IP  LG                   
Sbjct: 173 ALASCRLTGPIPSQ-LGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTI 231

Query: 160 --PLYNHSNLKIFDSENNQIYAQTESH-SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLK 216
              L    NL+I +  NN +  +  S      + Q  S++ +   G+  PK L    +L+
Sbjct: 232 PAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGL-IPKSLADLGNLQ 290

Query: 217 HVNLSHINLRGEFPN--WLSENNTKLQTLVQVNNYLSGIFQMPKHA---RRHLTYLDVSD 271
            ++LS  NL GE P   W   N ++L  LV  NN+LSG   +PK       +L  L +S 
Sbjct: 291 TLDLSANNLTGEIPEEFW---NMSQLLDLVLANNHLSG--SLPKSICSNNTNLEQLVLSG 345

Query: 272 NFFQVHIPV--GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKK 329
                 IPV     +SL  LDLS N L G IPE L      L  L L NN ++G +    
Sbjct: 346 TQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEAL-FELVELTDLYLHNNTLEGTLSPSI 404

Query: 330 INLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMP 389
            NLTNL  L L  N+  G++P+ +S       L+L +N  SG+IP+ +GN +  + + M 
Sbjct: 405 SNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMF 464

Query: 390 NNHLEGPIPMEFCQLNFLQ------------------------ILDISKKNIFGSLPSCF 425
            NH EG IP    +L  L                         ILD++   + GS+PS F
Sbjct: 465 GNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSF 524

Query: 426 NPF-----------SIKQGKP-----LNSMSGLDLSCNKLTG------------------ 451
                         S++   P     L +++ ++LS N+L G                  
Sbjct: 525 GFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTN 584

Query: 452 -----EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLV 506
                EIPL +GN   +  L +  N+LTG I  T   +++   LD+S N LTG IP QLV
Sbjct: 585 NGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLV 644

Query: 507 ELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSS 548
               L    + +N LSG  P W+ + +         N F+ S
Sbjct: 645 LCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVES 686

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  169 bits (428), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 169/541 (31%), Positives = 259/541 (47%), Gaps = 57/541 (10%)

Query: 48  AMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVP 107
           ++DG AL     + I+ +  LK+LSLSN+   G I    L    HLQ+L + HNNL G  
Sbjct: 83  SLDGLALTGKINRGIQKLQRLKVLSLSNNNFTGNI--NALSNNNHLQKLDLSHNNLSGQI 140

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHS 165
           P  LG++TSLQ L+++ N  +G +S     +  S++ L LS+N+   QIP +L   +  S
Sbjct: 141 PSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTL---FRCS 197

Query: 166 NLKIFDSENNQIYAQTESHSLTPKFQ-LNSIILSHGS-GVTFPKFLYHQHDLKHVNLSHI 223
            L   +   N+        S   + + L ++ LS  S   + P  +   H+LK + L   
Sbjct: 198 VLNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRN 257

Query: 224 NLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VG 281
              G  P+ +      L  +   +N+ SG         + L + DVS+N      P  +G
Sbjct: 258 QFSGALPSDIGLC-PHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIG 316

Query: 282 NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLD 341
           +M  L  LD S N L GK+P  ++    SL+ L LS NK+ G +     +   L  +QL 
Sbjct: 317 DMTGLVHLDFSSNELTGKLPSSIS-NLRSLKDLNLSENKLSGEVPESLESCKELMIVQLK 375

Query: 342 GNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI---MPNNHLEGPIP 398
           GN F G IP+   +  L   +  S N L+G IPR  G+  + E +I   + +N L G IP
Sbjct: 376 GNDFSGNIPDGFFDLGL-QEMDFSGNGLTGSIPR--GSSRLFESLIRLDLSHNSLTGSIP 432

Query: 399 MEFC---------------------QLNFLQ---ILDISKKNIFGSLPSCFNPFSIKQGK 434
            E                       ++ FLQ   +LD+    + GS+P+      I + +
Sbjct: 433 GEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPA-----DICESQ 487

Query: 435 PLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494
              S+  L L  N LTG IP  IGN + +  L++SHN LTG I  + SNL++ + L L  
Sbjct: 488 ---SLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILKLEA 544

Query: 495 NKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGN-----PFLSSS 549
           NKL+G+IP +L +L  L + +V+ N+L G+ P     F + + S+  GN     P L   
Sbjct: 545 NKLSGEIPKELGDLQNLLLVNVSFNRLIGRLP-LGDVFQSLDQSAIQGNLGICSPLLRGP 603

Query: 550 C 550
           C
Sbjct: 604 C 604

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  169 bits (428), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 179/584 (30%), Positives = 269/584 (46%), Gaps = 82/584 (14%)

Query: 39  MVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHV 98
           +V+  +G R + G        + +  +  LK+L+L+++ L+G+I    L    +L+ L +
Sbjct: 88  VVELELGRRKLSG-----KLSESVAKLDQLKVLNLTHNSLSGSIA-ASLLNLSNLEVLDL 141

Query: 99  DHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPI 156
             N+  G+ P  L N+ SL+VLN+  N   G I +    +L  I+E+ L+ NYF   IP+
Sbjct: 142 SSNDFSGLFP-SLINLPSLRVLNVYENSFHGLIPASLCNNLPRIREIDLAMNYFDGSIPV 200

Query: 157 SLG---------------------PLYNHSNLKIFDSENNQIYAQTESH--SLTPKFQLN 193
            +G                      L+  SNL +   +NN++     S    L+   +L+
Sbjct: 201 GIGNCSSVEYLGLASNNLSGSIPQELFQLSNLSVLALQNNRLSGALSSKLGKLSNLGRLD 260

Query: 194 SIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI 253
             I S+      P      + L + +       GE P  LS N+  +  L   NN LSG 
Sbjct: 261 --ISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRSLS-NSRSISLLSLRNNTLSGQ 317

Query: 254 FQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPE--------- 302
             +   A  +LT LD++ N F   IP  + N   L  ++ +K + I +IPE         
Sbjct: 318 IYLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQIPESFKNFQSLT 377

Query: 303 ----------------RLAMGCFSLRYLVLSNNKMKGHIFS-KKINLTNLWRLQLDGNHF 345
                            +   C +L+ LVL+ N  K  + S   +   NL  L +     
Sbjct: 378 SLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELPSVPSLQFKNLKVLIIASCQL 437

Query: 346 IGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLN 405
            G +P+ LSN      L LS N LSG IP WLG+L+    + + NN   G IP     L 
Sbjct: 438 RGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTFIGEIPHSLTSLQ 497

Query: 406 FLQILDISKKNIFGSLPSCFNPFSIKQG---------KPLNSMSGLDLSCNKLTGEIPLR 456
            L    +SK+N     PS   PF  K+          +P +    +DLS N L G I   
Sbjct: 498 SL----VSKENAVEE-PSPDFPFFKKKNTNAGGLQYNQPSSFPPMIDLSYNSLNGSIWPE 552

Query: 457 IGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSV 516
            G+L ++H LN+ +N L+G I +  S +   E LDLS+N L+G IPP LV+L+ L+ FSV
Sbjct: 553 FGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSV 612

Query: 517 AHNKLSGKTPDWVAQFATFNGSSYDGNPFL----SSSCNGEDDS 556
           A+NKLSG  P  V QF TF  SS++GN  L    +S C+  D S
Sbjct: 613 AYNKLSGPIPTGV-QFQTFPNSSFEGNQGLCGEHASPCHITDQS 655

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  165 bits (418), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 152/518 (29%), Positives = 237/518 (45%), Gaps = 54/518 (10%)

Query: 41  QCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDH 100
           Q FI    ++   L  +  + + +  SL+ L++S + L GT L + L + + L+ L +  
Sbjct: 80  QGFITDIDIESVPLQLSLPKNLPAFRSLQKLTISGANLTGT-LPESLGDCLGLKVLDLSS 138

Query: 101 NNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISL 158
           N L G  PW L  + +L+ L ++SNQLTG I  P +     ++ L L +N     IP  L
Sbjct: 139 NGLVGDIPWSLSKLRNLETLILNSNQLTGKIP-PDISKCSKLKSLILFDNLLTGSIPTEL 197

Query: 159 GPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHV 218
           G L     ++I    N +I  Q                         P  +    +L  +
Sbjct: 198 GKLSGLEVIRI--GGNKEISGQ------------------------IPSEIGDCSNLTVL 231

Query: 219 NLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHI 278
            L+  ++ G  P+ L +   KL+TL      +SG           L  L + +N     I
Sbjct: 232 GLAETSVSGNLPSSLGKLK-KLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSI 290

Query: 279 P--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
           P  +G +  L  L L +N L+G IPE +   C +L+ + LS N + G I S    L+ L 
Sbjct: 291 PREIGQLTKLEQLFLWQNSLVGGIPEEIG-NCSNLKMIDLSLNLLSGSIPSSIGRLSFLE 349

Query: 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP 396
              +  N F G IP ++SNC+    L L  N +SG IP  LG L+        +N LEG 
Sbjct: 350 EFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGS 409

Query: 397 IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPL----NSMSG----------- 441
           IP        LQ LD+S+ ++ G++PS    F ++    L    NS+SG           
Sbjct: 410 IPPGLADCTDLQALDLSRNSLTGTIPSGL--FMLRNLTKLLLISNSLSGFIPQEIGNCSS 467

Query: 442 ---LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
              L L  N++TGEIP  IG+L +I+ L+ S N+L G +     +  + + +DLS N L 
Sbjct: 468 LVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLE 527

Query: 499 GKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
           G +P  +  L+ L V  V+ N+ SGK P  + +  + N
Sbjct: 528 GSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLN 565

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  165 bits (417), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 174/621 (28%), Positives = 272/621 (43%), Gaps = 113/621 (18%)

Query: 40  VQCFIGFRAMD--GTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELH 97
           +Q F   +A+D    A + +  + + ++TSLK++ +S +   GT    GL     L  ++
Sbjct: 97  IQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGT-FPYGLGMATGLTHVN 155

Query: 98  VDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIP 155
              NN  G  P  LGN T+L+VL+       G++ S   K+LK+++ L LS N F  ++P
Sbjct: 156 ASSNNFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSS-FKNLKNLKFLGLSGNNFGGKVP 214

Query: 156 ISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSH-GSGVTFPKFLYHQHD 214
             +G L +                            L +IIL + G     P+       
Sbjct: 215 KVIGELSS----------------------------LETIILGYNGFMGEIPEEFGKLTR 246

Query: 215 LKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFF 274
           L++++L+  NL G+ P+ L +   +L T+    N L+G           L +LD+SDN  
Sbjct: 247 LQYLDLAVGNLTGQIPSSLGQLK-QLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQI 305

Query: 275 QVHIP--VGNMKSLSVLDLSKNRLIGKIPERLA---------------MGCFS------- 310
              IP  VG +K+L +L+L +N+L G IP ++A               MG          
Sbjct: 306 TGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNS 365

Query: 311 -LRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHL 369
            L++L +S+NK+ G I S      NL +L L  N F G+IPE + +C     + +  NH+
Sbjct: 366 PLKWLDVSSNKLSGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHI 425

Query: 370 SGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDI----------------- 412
           SG IP   G+L + + + +  N+L G IP +      L  +DI                 
Sbjct: 426 SGSIPAGSGDLPMLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSSIFSSPN 485

Query: 413 ------SKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTL 466
                 S  N  G +P+        Q +P  S+S LDLS N  +G IP RI +  ++ +L
Sbjct: 486 LQTFIASHNNFAGKIPNQI------QDRP--SLSVLDLSFNHFSGGIPERIASFEKLVSL 537

Query: 467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
           N+  N+L G I    + +     LDLS N LTG IP  L     L + +V+ NKL G  P
Sbjct: 538 NLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIP 597

Query: 527 DWVAQFATFNGSSYDGN------------PFLSSSCNGEDDSLIDMNNFYIIFAV-SYVI 573
             +  FA  +     GN              L+ S  G +   I +N+    F V + VI
Sbjct: 598 SNML-FAAIDPKDLVGNNGLCGGVLPPCSKSLALSAKGRNPGRIHVNHAVFGFIVGTSVI 656

Query: 574 VILGIDGVLYVNPYSGRRWFY 594
           V +G+        +   RW Y
Sbjct: 657 VAMGM-------MFLAGRWIY 670

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  162 bits (411), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 230/476 (48%), Gaps = 37/476 (7%)

Query: 87  LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
           +  F  LQ+L + + NL G     +G+ + L V+++SSN L G I S  L  LK++QEL 
Sbjct: 102 ISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSS-LGKLKNLQELC 160

Query: 147 LSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT 204
           L++N    +IP  LG   +  NL+IFD+      ++     L     L SI     S ++
Sbjct: 161 LNSNGLTGKIPPELGDCVSLKNLEIFDN----YLSENLPLELGKISTLESIRAGGNSELS 216

Query: 205 --FPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR- 261
              P+ + +  +LK + L+   + G  P  L +  +KLQ+L   +  LSG  ++PK    
Sbjct: 217 GKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQL-SKLQSLSVYSTMLSG--EIPKELGN 273

Query: 262 -RHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN 318
              L  L + DN     +P  +G +++L  + L +N L G IPE +     SL  + LS 
Sbjct: 274 CSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGF-MKSLNAIDLSM 332

Query: 319 NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLG 378
           N   G I     NL+NL  L L  N+  G IP  LSNC       +  N +SG IP  +G
Sbjct: 333 NYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIG 392

Query: 379 NLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPL-- 436
            L      +   N LEG IP E      LQ LD+S+  + GSLP+    F ++    L  
Sbjct: 393 LLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGL--FQLRNLTKLLL 450

Query: 437 --NSMSG--------------LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST 480
             N++SG              L L  N++TGEIP  IG L  +  L++S N L+G +   
Sbjct: 451 ISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLE 510

Query: 481 FSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
            SN +Q + L+LS N L G +P  L  L  L V  V+ N L+GK PD +    + N
Sbjct: 511 ISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLN 566

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  162 bits (409), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 233/488 (47%), Gaps = 22/488 (4%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
           I    +LKLL L+ + ++G  L + +   V LQE+ +  N   G  P  +GN+TSL+ L 
Sbjct: 225 IGKCLNLKLLGLAQNFISGE-LPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLA 283

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYA 179
           +  N L G I S  + ++KS+++L L  N     IP  LG L   S +   D   N +  
Sbjct: 284 LYGNSLVGPIPSE-IGNMKSLKKLYLYQNQLNGTIPKELGKL---SKVMEIDFSENLLSG 339

Query: 180 QTESH-SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
           +     S   + +L  +  +  +G+  P  L    +L  ++LS  +L G  P    +N T
Sbjct: 340 EIPVELSKISELRLLYLFQNKLTGI-IPNELSKLRNLAKLDLSINSLTGPIPPGF-QNLT 397

Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRL 296
            ++ L   +N LSG+          L  +D S+N     IP  +    +L +L+L  NR+
Sbjct: 398 SMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRI 457

Query: 297 IGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNC 356
            G IP  + + C SL  L +  N++ G   ++   L NL  ++LD N F G +P  +  C
Sbjct: 458 FGNIPPGV-LRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTC 516

Query: 357 NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN 416
                L+L+ N  S  +P  +  LS      + +N L GPIP E      LQ LD+S+ +
Sbjct: 517 QKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNS 576

Query: 417 IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
             GSLP             L+ +  L LS N+ +G IP  IGNLT +  L +  N  +G 
Sbjct: 577 FIGSLPPELG--------SLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGS 628

Query: 477 ILSTFSNLKQTE-SLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATF 535
           I      L   + +++LSYN  +G+IPP++  L+ L   S+ +N LSG+ P      ++ 
Sbjct: 629 IPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSL 688

Query: 536 NGSSYDGN 543
            G ++  N
Sbjct: 689 LGCNFSYN 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  162 bits (409), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 172/597 (28%), Positives = 275/597 (46%), Gaps = 44/597 (7%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMT 66
           E   +  LE L L  +    SL ++I      + Q F     +  T L       I +  
Sbjct: 307 EFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLF-----LSETQLSGEIPAEISNCQ 361

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126
           SLKLL LSN+ L G I D  L + V L  L++++N+L G     + N+T+LQ   +  N 
Sbjct: 362 SLKLLDLSNNTLTGQIPDS-LFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNN 420

Query: 127 LTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESH 184
           L G +    +  L  ++ + L  N F  ++P+ +G   N + L+  D   N++  +  S 
Sbjct: 421 LEGKVPKE-IGFLGKLEIMYLYENRFSGEMPVEIG---NCTRLQEIDWYGNRLSGEIPS- 475

Query: 185 SLTPKFQLNSIILSHGSGV-TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL 243
           S+     L  + L     V   P  L + H +  ++L+   L G  P+      T L+  
Sbjct: 476 SIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG-FLTALELF 534

Query: 244 VQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHI-PVGNMKSLSVLDLSKNRLIGKIPE 302
           +  NN L G         ++LT ++ S N F   I P+    S    D+++N   G IP 
Sbjct: 535 MIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPL 594

Query: 303 RLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL 362
            L     +L  L L  N+  G I      ++ L  L +  N   G IP  L  C     +
Sbjct: 595 ELGKST-NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHI 653

Query: 363 YLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP 422
            L++N+LSG IP WLG L +  ++ + +N   G +P E   L  +  L +   ++ GS+P
Sbjct: 654 DLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIP 713

Query: 423 S------CFNPFSIKQGK---PLNSMSG-------LDLSCNKLTGEIPLRIGNLTRIHT- 465
                    N  ++++ +   PL S  G       L LS N LTGEIP+ IG L  + + 
Sbjct: 714 QEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSA 773

Query: 466 LNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKT 525
           L++S+N  TG I ST S L + ESLDLS+N+L G++P Q+ ++ +L   ++++N L GK 
Sbjct: 774 LDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL 833

Query: 526 PDWVAQFATFNGSSYDGNPFLSSS----CN---GEDDSLIDMNNFYIIFAVSYVIVI 575
                QF+ +   ++ GN  L  S    CN    ++   +      II A+S +  I
Sbjct: 834 K---KQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAI 887

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 162/563 (28%), Positives = 261/563 (46%), Gaps = 59/563 (10%)

Query: 66  TSLKLLSLSNSRLN-GTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
            SL ++SL+ S LN G  +   L + ++LQ + +  N L G  P  +GN  SL  ++ S+
Sbjct: 71  VSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFST 130

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESH 184
           N L G+I    +  LK ++ L L NN    PI    L    NLK  D   NQ+  +    
Sbjct: 131 NLLFGDIPFS-ISKLKQLEFLNLKNNQLTGPIP-ATLTQIPNLKTLDLARNQLTGEI--- 185

Query: 185 SLTPKF-QLNSIILSHG------SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN 237
              P+    N ++   G      +G   P  +     L + ++   NL G  P  +  N 
Sbjct: 186 ---PRLLYWNEVLQYLGLRGNMLTGTLSPD-MCQLTGLWYFDVRGNNLTGTIPESIG-NC 240

Query: 238 TKLQTLVQVNNYLSGIFQMPKH-ARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKN 294
           T  + L    N ++G+  +P +     +  L +  N     IP  +G M++L+VLDLS N
Sbjct: 241 TSFEILDVSYNQITGV--IPYNIGFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDN 298

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLS 354
            L G IP  L    F+ + L L  NK+ G I  +  N++ L  LQL+ N  +G+IP  L 
Sbjct: 299 ELTGPIPPILGNLSFTGK-LYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELG 357

Query: 355 NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK 414
                  L L++N+L G IP  + + +      +  N L G +P+EF  L  L  L++S 
Sbjct: 358 KLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSS 417

Query: 415 KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474
            +  G +P+       + G  +N +  LDLS N  +G IPL +G+L  +  LN+S N L 
Sbjct: 418 NSFKGKIPA-------ELGHIIN-LDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLN 469

Query: 475 GLILSTFSNLKQTESLDLSYN------------------------KLTGKIPPQLVELNA 510
           G + + F NL+  + +D+S+N                        K+ GKIP QL    +
Sbjct: 470 GTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFS 529

Query: 511 LAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGE--DDSLIDMNNFYIIFA 568
           LA  +++ N LSG  P  +  F  F+ +S+ GNPFL  +  G     SL     F  +  
Sbjct: 530 LANLNISFNNLSGIIPP-MKNFTRFSPASFFGNPFLCGNWVGSICGPSLPKSQVFTRVAV 588

Query: 569 VSYVIVILGIDGVLYVNPYSGRR 591
           +  V+  + +  ++++  Y  ++
Sbjct: 589 ICMVLGFITLICMIFIAVYKSKQ 611

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 221/481 (45%), Gaps = 39/481 (8%)

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126
           SL++L L  +R +G I  Q L   + L++L++  N L+G  P  +GN++SLQ L I SN 
Sbjct: 116 SLEVLDLCTNRFHGVIPIQ-LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNN 174

Query: 127 LTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSL 186
           LTG I  P +  L+ ++ ++   N F   I    +    +LK+     N           
Sbjct: 175 LTGVI-PPSMAKLRQLRIIRAGRNGFSGVIP-SEISGCESLKVLGLAEN----------- 221

Query: 187 TPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQV 246
                     L  GS    PK L    +L  + L    L GE P  +  N ++L+ L   
Sbjct: 222 ----------LLEGS---LPKQLEKLQNLTDLILWQNRLSGEIPPSVG-NISRLEVLALH 267

Query: 247 NNYLSGIF--QMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERL 304
            NY +G    ++ K  +    YL  +    ++   +GN+   + +D S+N+L G IP+  
Sbjct: 268 ENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEF 327

Query: 305 AMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYL 364
                +L+ L L  N + G I  +   LT L +L L  N   G IP+ L        L L
Sbjct: 328 GH-ILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQL 386

Query: 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC 424
            DN L GKIP  +G  S    + M  N L GPIP  FC+   L +L +    + G++P  
Sbjct: 387 FDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIP-- 444

Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
                 +  K   S++ L L  N+LTG +P+ + NL  +  L +  N L+G I +    L
Sbjct: 445 ------RDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKL 498

Query: 485 KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNP 544
           K  E L L+ N  TG+IPP++  L  +  F+++ N+L+G  P  +    T       GN 
Sbjct: 499 KNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNK 558

Query: 545 F 545
           F
Sbjct: 559 F 559

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
224102049	577	predicted protein [Populus trichocarpa]	0.821	0.896	0.475	1e-130
255581263	912	serine-threonine protein kinase, plant-t	0.734	0.506	0.484	1e-118
224120284	929	predicted protein [Populus trichocarpa]	0.952	0.644	0.411	1e-116
224134609	676	predicted protein [Populus trichocarpa]	0.923	0.859	0.387	1e-111
224142717	876	predicted protein [Populus trichocarpa]	0.855	0.614	0.411	1e-111
224144186	973	predicted protein [Populus trichocarpa]	0.852	0.550	0.408	1e-110
224134597	947	predicted protein [Populus trichocarpa]	0.958	0.636	0.393	1e-110
224106948	658	predicted protein [Populus trichocarpa]	0.864	0.826	0.411	1e-110
224142721	926	predicted protein [Populus trichocarpa]	0.926	0.629	0.396	1e-110
224142723	923	predicted protein [Populus trichocarpa]	0.917	0.625	0.380	1e-108

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/566 (47%), Positives = 351/566 (62%), Gaps = 49/566 (8%)

Query: 87  LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
           LCE   LQEL + +NN+ G  P C  N+T+LQ L+IS N  TGNIS  P+  L SI++L 
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 147 LSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE-SHSLTPKFQLNSIILSH-GSGVT 204
           LS+N+FQIPISLGP +N SNLK  + + N++Y  TE  H+L P+FQL  + L++ GSG T
Sbjct: 67  LSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHNLIPRFQLQRLSLAYTGSGGT 126

Query: 205 FPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHL 264
           F K LY+QHDL+ V+LSHI + GEFP+WL +NNTKL+ L  VNN  SG FQ+  H+   L
Sbjct: 127 FLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLDRL 186

Query: 265 TYLDVSDNFFQVHIP---------------------------VGNMKSLSVLDLSKNRLI 297
           ++LD+S N     IP                           + NM SL +LDLS N L 
Sbjct: 187 SHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNELS 246

Query: 298 GKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCN 357
           G IPE L   C SLR LVLSNN +KG  F +  NL  L  L L GN   G +P SLSN +
Sbjct: 247 GNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSNGS 306

Query: 358 LFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNI 417
               L +S N+LSGKIPRW+ N+S  E + +  N+L G +P  FC    +  + +SK  +
Sbjct: 307 RLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFCSSMMMTEVYLSKNKL 366

Query: 418 FGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI 477
            GSL   F+           S++ LDLS N LTGEIP ++G L  I  LN+SHN LTG I
Sbjct: 367 EGSLIDAFDGCL--------SLNKLDLSHNSLTGEIPFKLGYLGNIQVLNLSHNSLTGPI 418

Query: 478 LSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNG 537
             TFSNLK+ ESLD+SYN L G+IP QLV+L++L+ FSVA+N LSGKTP+  AQFATFN 
Sbjct: 419 PPTFSNLKKIESLDISYNNLNGEIPYQLVDLDSLSAFSVAYNNLSGKTPERAAQFATFNR 478

Query: 538 SSYDGNPF-----LSSSCNGE-------DDSLIDMNNFYIIFAVSYVIVILGIDGVLYVN 585
           SSY+GNP      L+++C GE           IDM  FY+ F+V+Y+I +L I  VLY+N
Sbjct: 479 SSYEGNPLLCGPPLTNNCTGEILPSPLSSYGFIDMQAFYVTFSVAYIINLLAIGAVLYIN 538

Query: 586 PYSGRRWFYFVESWMTTCYHFALNNL 611
           P+  R WFYF+   +  CY+F ++NL
Sbjct: 539 PHWRRAWFYFIRESINNCYYFLVDNL 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/510 (48%), Positives = 329/510 (64%), Gaps = 48/510 (9%)

Query: 49  MDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILD-QGLCEFVHLQELHVDHNNLYGVP 107
           +D   L+ +FLQ +  MTSLK+LSLS   L G + + QGLCE +HL+ L V  N  +G+ 
Sbjct: 184 LDKIELENSFLQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELIHLRVLDVSSNEFHGIL 243

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
           PWCL N+TSLQ+L++SSNQ  G+IS+ PLK LKS+ +L +SNN+FQ+P SLGP +NHSNL
Sbjct: 244 PWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNHFQVPFSLGPFFNHSNL 303

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILS-HGSGVTFPKFLYHQHDLKHVNLSHINLR 226
           K    +NN IY + E HS  P+FQL SII S +G   TFP FLYHQ++L+ V+LSH++L+
Sbjct: 304 KHIRGQNNAIYLEAELHS-APRFQLISIIFSGYGICGTFPNFLYHQNNLQFVDLSHLSLK 362

Query: 227 GEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV------ 280
           GEFPNWL  NNT+L+ L  VNN LSG  Q+P H   +L  LD+S+N    HIP+      
Sbjct: 363 GEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFL 422

Query: 281 ---------------------GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNN 319
                                GNM SL +LDLS N+L G IPE LA GCFSL  L+LSNN
Sbjct: 423 PKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNN 482

Query: 320 KMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN 379
            ++G +FSK+ NLTNLW L+LD NHF G IP+SLS   L   + LSDNHLSG IP W+GN
Sbjct: 483 SLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSKSAL-SIMDLSDNHLSGMIPGWIGN 541

Query: 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI--------- 430
           LS  +++I+ NN L+GPIP+EFCQL++L++LD++  ++ G LPSC +P SI         
Sbjct: 542 LSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNM 601

Query: 431 KQGKPLNSMSG------LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
            +G   N+ SG      LDLS N++TG IP  IG +  +  LN+  N+  G I +    L
Sbjct: 602 IEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGL 661

Query: 485 KQTESLDLSYNKLTGKIPP--QLVELNALA 512
            Q   + L+ N L+G IP   QL + ++LA
Sbjct: 662 YQLSLIVLADNNLSGSIPSCLQLDQSDSLA 691

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 276/670 (41%), Positives = 372/670 (55%), Gaps = 71/670 (10%)

Query: 4   FLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMD--GTALDKNFLQV 61
            L  L  L NL+ L L N+ F  ++L          +        +D   + LD +FLQ 
Sbjct: 253 LLQSLAKLPNLKTLDLGNNNFEGTILAQ-------ALPSLKNLHKLDLSSSTLDNSFLQT 305

Query: 62  IKSMTSLKLLSLSNSRLNGTI-LDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
           I  +T+L  L L+  RL+G+I + +GLCE  HLQ L + +N+L GV P CL N+TSL+ +
Sbjct: 306 IGRITTLTSLKLNGCRLSGSIPIAEGLCELKHLQSLDISNNSLTGVLPKCLANLTSLKQI 365

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ 180
           ++SSN   G+ISS PL  L SIQEL+LS+N FQIPISL    NHS LK F   NN+I A+
Sbjct: 366 DLSSNHFGGDISSSPLITLTSIQELRLSDNNFQIPISLRSFSNHSELKFFFGYNNEICAE 425

Query: 181 TESHSLTPKFQLNSIILS---HGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN 237
            E H+L PKFQL  + LS   +G  + FPKFL++QH+L+ +  S++ +RG  PNWL ENN
Sbjct: 426 LEEHNLIPKFQLQRLHLSGQAYGGALPFPKFLFYQHNLREIYFSNMRMRGGVPNWLLENN 485

Query: 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV---GNMKSLSVLDLSKN 294
           T L  L  VNN LSG FQ+P H    L+ LD+SDN    HIP        SL+ L +SKN
Sbjct: 486 TNLHELFLVNNSLSGPFQLPIHPHVSLSQLDISDNHLDSHIPTEIGAYFPSLTFLSMSKN 545

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLS 354
              G IP        SL  L LS N + G + S   +L  L  + L  N   G + ++  
Sbjct: 546 HFNGIIPSSFGYMS-SLLVLDLSENNISGKLPSCFSSLP-LVHVYLSQNKLQGSLEDAFH 603

Query: 355 NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK 414
                  L LS N L+G I  W+G  S    +++  N+LEG IP + C+L+ L  +D+S 
Sbjct: 604 KSFELITLDLSHNQLTGNISEWIGEFSHMSYLLLGYNNLEGRIPNQLCKLDKLSFIDLSH 663

Query: 415 KNIFGSLPSCF---------------------NPF-----SIKQGKP---LNSMSGLDLS 445
               G +  C                       P      S+    P   LN MSG+DLS
Sbjct: 664 NKFSGHILPCLRFRSSIWYSNLRIYPDRYLIREPLEITTKSVSYSYPISILNIMSGMDLS 723

Query: 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL 505
           CN LTGEIP  IGNL  IH LN+S+N L G I  TFSNL + ESLDLS N LTG IPP L
Sbjct: 724 CNNLTGEIPPEIGNLNHIHVLNLSNNFLIGPIPQTFSNLSEVESLDLSNNSLTGAIPPGL 783

Query: 506 VELNALAVFSVAHNKLSGKT-PDWVAQFATFNGSSYDGNPFL------------------ 546
           V+L+ L VFSVAHN LSG+T P+ + QF+TFN SSY+GNP L                  
Sbjct: 784 VQLHYLEVFSVAHNNLSGRTPPNMIPQFSTFNESSYEGNPLLCGPPLSRHCTTQEEEEAS 843

Query: 547 -----SSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMT 601
                +S+ + E+   +D + FY+ F V+Y++++L    +LY+NP   R WFYF++  + 
Sbjct: 844 SLPKRTSTDDIEESGFMDTDVFYVSFVVTYIMMLLVTAAILYINPNWRRAWFYFIKQSIN 903

Query: 602 TCYHFALNNL 611
            CY+F ++NL
Sbjct: 904 NCYYFFVDNL 913

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134609|ref|XP_002327446.1| predicted protein [Populus trichocarpa] gi|222836000|gb|EEE74421.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 271/700 (38%), Positives = 374/700 (53%), Gaps = 119/700 (17%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPW---MVQCFIG---FRA-----------MD 50
           + NL++LE+L LD        LQS+          +Q F G   FR            + 
Sbjct: 1   MQNLSSLESLYLDGCSLDEHSLQSLGALPSLKNLTLQAFSGSVPFRGFLDLKNLEYLDLS 60

Query: 51  GTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWC 110
              L+ +  Q IK MTSLK L L + +L+G  + QGLC+  HLQEL +  N+L G  P C
Sbjct: 61  YNTLNNSIFQAIKMMTSLKTLILQSCKLDGRTIAQGLCDLNHLQELSMYDNDLNGFLPLC 120

Query: 111 LGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF 170
           L N+TSLQ                         +L LS+N+ +IP+SL PLYN S LK F
Sbjct: 121 LANLTSLQ-------------------------QLDLSSNHLKIPMSLSPLYNLSKLKYF 155

Query: 171 DSENNQIYAQTESHSLTPKFQLNSIILS-HGSGV-TFPKFLYHQHDLKHVNLSHINLRGE 228
           D  +N+IY + + H+L+PKFQL SI LS HG G   FPKFLYHQ  L+ + L++I ++GE
Sbjct: 156 DGSDNEIYTEEDDHNLSPKFQLESISLSSHGQGAGAFPKFLYHQFSLQSLALTNIQIKGE 215

Query: 229 FPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--------- 279
           FPNWL ENNT L  L   N  L G F +PK++  +L++L +S N+FQ  IP         
Sbjct: 216 FPNWLIENNTYLHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGKIPSEIGARLPG 275

Query: 280 ------------------VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321
                             +GN+ SL +LDLS N L G+IP  +     SL +L LS N  
Sbjct: 276 LEVLLMSDNGFNGSVPFSLGNISSLQLLDLSNNSLQGQIPGWIG-NMSSLEFLDLSVNNF 334

Query: 322 KGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLS 381
            G +  +    +NL  + L  N   G I  +  N +    L LS N+L+G IP+W+  LS
Sbjct: 335 SGRLPPRFDTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFALDLSHNNLTGSIPKWIDRLS 394

Query: 382 VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF---NPFSIK------- 431
               +++  N+LEG IP+  C+L+ L ++D+S  ++ G++ S     +PF  +       
Sbjct: 395 NLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHLSGNILSWMISSHPFPQEYDSYDYL 454

Query: 432 ------------------QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKL 473
                             +G  +   +G+D SCN   GEIP  IGNL+ I  LN+SHN L
Sbjct: 455 SSSQQSFEFTTKNVSLSYRGNIIQYFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSL 514

Query: 474 TGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA 533
           TG I  TFSNLK+ ESLDLSYNKL G+IPPQL+EL +L  FSVAHN LSGKT   VAQF+
Sbjct: 515 TGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFSLEFFSVAHNNLSGKTLARVAQFS 574

Query: 534 TFNGSSYDGNPFL------------------SSSCNGEDD-SLIDMNNFYIIFAVSYVIV 574
           TF  S Y  NPFL                   +S N EDD   +DM  FY+ F V+Y+++
Sbjct: 575 TFEESCYKDNPFLCGEPLPKMCGAAMPLSPTPTSTNNEDDGGFMDMEVFYVTFGVAYIMM 634

Query: 575 ILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATL 614
           +L I  +LY+NPY  + WF+F+E  +    +F + +L+ L
Sbjct: 635 LLVIGAILYINPYWRQAWFHFIEVSINNLLYFLVGHLSIL 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142717|ref|XP_002324701.1| predicted protein [Populus trichocarpa] gi|222866135|gb|EEF03266.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 264/642 (41%), Positives = 357/642 (55%), Gaps = 104/642 (16%)

Query: 49  MDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           +D  +LD++ LQ + ++  LK  +LS S L+ TI   GLC+  +LQELH+  NNL G  P
Sbjct: 257 LDQCSLDEHSLQNLGALPFLK--NLSFSALSSTIPSGGLCDLNNLQELHMYDNNLSGFLP 314

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168
            CL N+TSLQ                          L LS+N+ +IP+SL PLYN S LK
Sbjct: 315 PCLANLTSLQ-------------------------HLDLSSNHLKIPVSLSPLYNLSKLK 349

Query: 169 IFDSENNQIYAQTESHSLTPKFQLNSIIL-SHGSGV-TFPKFLYHQHDLKHVNLSHINLR 226
            FD   N+I+ + + H+L+PKFQ+ S+ L S G G   FPKFLYHQ +L++++L++I+++
Sbjct: 350 YFDGSGNEIFTEEDDHNLSPKFQIESLYLNSRGQGARAFPKFLYHQVNLQYMDLTNIHIK 409

Query: 227 GEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP------- 279
           GEFPNWL ENNT LQ L   N  LSG F +PK++  +L++L +S N FQ  IP       
Sbjct: 410 GEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISKNHFQGQIPSEIGAHL 469

Query: 280 --------------------VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNN 319
                               +GN+ SL   DLS N L G+IP  +     SL +L LS N
Sbjct: 470 PRLEVLLMSDDGFNGSIPFSLGNISSLQAFDLSNNSLQGQIPGWIG-NMSSLEFLDLSGN 528

Query: 320 KMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN 379
              G +  +    +NL  L L  N   G I     N      L LS N+L+G IP W+G 
Sbjct: 529 NFSGRLPLRFDTSSNLRYLYLSRNKLQGPIAMIFYNSVEIFALDLSHNNLTGTIPEWIGR 588

Query: 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF---NPF-------- 428
           LS    +++  N+LEG IP++  +L+ L ++D+S  ++ G++ S     +PF        
Sbjct: 589 LSNLRFLLLSYNNLEGEIPIQLSKLDQLTLIDLSHNHLSGNILSWMISTHPFPRQYYSND 648

Query: 429 ---SIKQ--------------GKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHN 471
              S +Q              G  +   +G+D SCN  TGEIP  IGNL +I  LN+SHN
Sbjct: 649 YVSSSQQSLEFTTKNVSLYYIGSIIQYFTGIDFSCNNFTGEIPFEIGNLIKIKALNLSHN 708

Query: 472 KLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQ 531
            LTG I  TFSNLK+ ESLDLSYNKL G+IPP+L EL +L VFSVAHN LSGKTP  VAQ
Sbjct: 709 SLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPTRVAQ 768

Query: 532 FATFNGSSYDGNPFL------------------SSSCNGEDD-SLIDMNNFYIIFAVSYV 572
           FATF+   Y  NPFL                   +S N ED+   IDM  FY+ F V Y+
Sbjct: 769 FATFDEKCYKDNPFLCGEPLLKICGAAMPPSPSPTSTNNEDNGGFIDMEVFYVTFWVEYI 828

Query: 573 IVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATL 614
           +V++ I  VLY+NPY  R WFYF+E  +  CY+F ++NL  L
Sbjct: 829 MVLIVIGAVLYINPYWRRAWFYFIEVSINNCYYFLVDNLPIL 870

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 260/637 (40%), Positives = 356/637 (55%), Gaps = 101/637 (15%)

Query: 53  ALDKNFLQVIKSMTSLKLLSLSNSRLNGTI-LDQGLCEFVHLQELHVDHNNLYGVPPWCL 111
            LD N LQ I++MTSLK L L + RLNG I   QGLC+  HLQEL++  N+L G  P CL
Sbjct: 357 TLDNNILQSIRAMTSLKTLGLQSCRLNGRIPTTQGLCDLNHLQELYMSDNDLSGFLPLCL 416

Query: 112 GNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFD 171
            N+TSLQ                         +L LS+N+ +IP+SL P +N S LK FD
Sbjct: 417 ANLTSLQ-------------------------QLSLSSNHLKIPMSLSPFHNLSKLKYFD 451

Query: 172 SENNQIYAQTESHSLTPKFQLNSIILS-HGSGV-TFPKFLYHQHDLKHVNLSHINLRGEF 229
              N+I+A+ +  +++ KFQL  + LS  G G   FP+FLYHQ  L++++L++I ++GEF
Sbjct: 452 GSGNEIFAEEDDRNMSSKFQLEYLYLSSRGQGAGAFPRFLYHQFSLRYLDLTNIQIKGEF 511

Query: 230 PNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV---GNMKSL 286
           P+WL ENNT LQ L   N  LSG F +PK++  +L++L +S N F+  IP     ++  L
Sbjct: 512 PSWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSFLSISMNHFRGQIPSEIGAHLPGL 571

Query: 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI 346
            VL +S N   G IP  L     SL++L LSNN ++G I     N+++L  L L GN+F 
Sbjct: 572 EVLFMSDNGFNGSIPFSLG-NISSLQWLDLSNNILQGQIPGWIGNMSSLEFLDLSGNNFS 630

Query: 347 GEIPESLSNCNLFGGLYLSDN------------------------HLSGKIPRWLGNLSV 382
           G  P   S  +    +YLS N                        +L+G IP W+  LS 
Sbjct: 631 GRFPPRFSTSSNLRYVYLSRNKLQGPITMTFYDLAEIFALDLSHNNLTGTIPEWIDRLSN 690

Query: 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG----------SLPSCFN------ 426
              +++  N+LEG IP++  +L+ L ++D+S  ++ G          S P  +N      
Sbjct: 691 LRFLLLSYNNLEGEIPIQLSRLDRLTLIDLSHNHLSGNILYWMISTHSFPQLYNSRDSLS 750

Query: 427 ------PFSIK------QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474
                  F+ K      +G  +   +G+D SCN  TGEIP  IGNL+ I  LN+SHN LT
Sbjct: 751 SSQQSFEFTTKNVSLSYRGIIIWYFTGIDFSCNNFTGEIPPEIGNLSMIKVLNLSHNNLT 810

Query: 475 GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFAT 534
           G I  TF NLK+ ESLDLSYNKL G+IPP+L EL +L VF VAHN LSGKTP  VAQFAT
Sbjct: 811 GPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFIVAHNNLSGKTPARVAQFAT 870

Query: 535 FNGSSYDGNPFLS----------------SSCNGEDD-SLIDMNNFYIIFAVSYVIVILG 577
           F+ S Y  NPFL                 +S N ED+   +DM  FY+ F V+Y++V+L 
Sbjct: 871 FDESCYKDNPFLCGEPLSKICGVAMPPSPTSTNNEDNGGFMDMKVFYVTFWVAYIMVLLV 930

Query: 578 IDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATL 614
           I  VLY+NPY  R WFYF+E  +  CY+F ++N   L
Sbjct: 931 IGAVLYINPYWRRGWFYFIEVSINNCYYFLVDNFPIL 967

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 278/706 (39%), Positives = 380/706 (53%), Gaps = 103/706 (14%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFL------- 59
           EL NL++L++L +D        LQS+    P +    +  RA+ G+   + FL       
Sbjct: 244 ELQNLSSLKSLYMDGCSLDEHSLQSLGAL-PSLKNLLL--RALSGSVPSRGFLDLKNLEY 300

Query: 60  -------------QVIKSMTSLKLLSLSNSRLNGTI-LDQGLCEFVHLQELHVDHNNLYG 105
                        Q I+ MT LK L+L   +L+G I L QG     +L+ L +  N L  
Sbjct: 301 LDLNLNTLNNSIFQAIRMMTFLKALNLHGCKLDGRIPLAQGFLNLKNLEHLDLSSNTLDN 360

Query: 106 VPPWCLG--NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYN 163
                +G  ++  LQ L +  N L+G +  P L +L S+Q+L LS N+ +IP+SL PLYN
Sbjct: 361 SIFQTIGLCDLNHLQQLYMYDNDLSGFLP-PCLANLTSLQQLDLSFNHLKIPMSLSPLYN 419

Query: 164 HSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILS-HGSGV-TFPKFLYHQHDLKHVNLS 221
            S LK F   +N+IYA+ + HSL+PKFQL SI LS  G G   FPKFLYHQ  L+  +L+
Sbjct: 420 LSKLKYFIGSDNEIYAEEDDHSLSPKFQLESISLSNRGQGAGAFPKFLYHQFSLQSFDLT 479

Query: 222 HINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV- 280
           +I ++GEFPNWL ENNT L  L   N  L G F +PK++  +L++L +S N+FQ  IP+ 
Sbjct: 480 NIQIKGEFPNWLIENNTHLHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGQIPLE 539

Query: 281 --GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
               +  L VL +S N   G IP  L     SL+ L LSNN ++G I     N+++L  L
Sbjct: 540 IGARLPGLEVLFMSSNGFNGSIPFSLG-NISSLKGLDLSNNSLQGQIPGWIGNMSSLEFL 598

Query: 339 QLDGNHFIGEIPESLSNCNL-----------------------FGGLYLSDNHLSGKIPR 375
            L GN+F G +P      NL                          L LS N+L+G IP+
Sbjct: 599 NLSGNNFSGRLPPRFDTSNLRYVYLSRNKLQGPIAMTFYNSFEMFALDLSHNNLTGSIPK 658

Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF---NPFSIK- 431
           W+  LS    +++  N+LEG IP+  C+L+ L ++D+S  +  G++ S     +PF  + 
Sbjct: 659 WIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHFSGNILSWMISSHPFPQQY 718

Query: 432 ------------------------QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467
                                   +G  +   +G+D SCN   GEIP  IGNL+ I  LN
Sbjct: 719 DSNDYLSSSQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFIGEIPPEIGNLSMIKVLN 778

Query: 468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
           +SHN LTG I  TFSNLK+ ESLDLSYNKL G+IPPQL+EL  L  FSVAHN LSGKT  
Sbjct: 779 LSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFFLEFFSVAHNNLSGKTLA 838

Query: 528 WVAQFATFNGSSYDGNPFLS------------------SSCNGEDD-SLIDMNNFYIIFA 568
            VAQFATF  S Y  NPFL                   +S N EDD   IDM  FY+ F 
Sbjct: 839 RVAQFATFEESCYKDNPFLCGEPLLKICGTTMPPSPMPTSTNNEDDGGFIDMEVFYVTFG 898

Query: 569 VSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATL 614
           V+Y++V+L I  +LY+NPY  R WF+F+E  +  CY+F ++NL  L
Sbjct: 899 VAYIMVLLVISAILYINPYWRRAWFHFIEVSINNCYYFLVDNLPIL 944

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106948|ref|XP_002333588.1| predicted protein [Populus trichocarpa] gi|222837496|gb|EEE75875.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 267/649 (41%), Positives = 357/649 (55%), Gaps = 105/649 (16%)

Query: 44  IGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTI-LDQGLCEFVHLQELHVDHNN 102
           + F  +    L  N LQ I++M SLK L L N  LNG +   QGLC+  HLQEL++  N+
Sbjct: 31  LEFLDLSSNTLSNNILQTIRTMPSLKTLWLQNCSLNGQLPTTQGLCDLNHLQELYMYDND 90

Query: 103 LYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLY 162
           L G  P CL NMTSLQ                          L LS+N+ +IP+SL PLY
Sbjct: 91  LIGFLPPCLANMTSLQ-------------------------RLYLSSNHLKIPMSLSPLY 125

Query: 163 NHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT--FPKFLYHQHDLKHVNL 220
           N S LK F    N+I A+ + H+LTPKFQL S+ LS+G   T  FPKFLYHQ  L+ ++L
Sbjct: 126 NLSKLKSFYGSGNEICAEEDDHNLTPKFQLESLSLSNGGQNTRAFPKFLYHQFSLQSLDL 185

Query: 221 SHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV 280
           ++  ++GEFPNWL ENNT L+ L   N  LSG F +PK +  +L++L +S N FQ  IP 
Sbjct: 186 TNFQIKGEFPNWLIENNTYLKRLSLENCSLSGPFLLPKSSHVNLSFLSISMNHFQGQIPS 245

Query: 281 ---GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRY-LVLSNNKMKGHIFSKKINLTNLW 336
               ++  L VL +S N   G IP   ++G  SL Y L LSNN ++G I     N+++L 
Sbjct: 246 EIRAHLPGLEVLLMSDNGFNGSIPS--SLGNMSLMYELDLSNNSLQGQIPGWIGNMSSLE 303

Query: 337 RLQLDGNHFIGEIPES-----------LSNCNLFG-------------GLYLSDNHLSGK 372
            L L  N+  G +P             LS   L G              L LS N L+G+
Sbjct: 304 FLDLSRNNLSGPLPPRFNTSSKLRVVYLSRNKLQGPIAMAFYDSSEIFALDLSHNDLTGR 363

Query: 373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF---NPFS 429
           IP W+G LS    +++  N+LEG IP+  C+L+ L ++D+S   + G++ S     +PF 
Sbjct: 364 IPEWIGRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNILSWMISTHPFP 423

Query: 430 IK-------------------------QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIH 464
            +                         +G  +  + G+D SCN  TG IP  IGNL++I 
Sbjct: 424 FQYNSHDSMFSSQQSFEFTTKNVSLPYKGSIIQYLIGIDFSCNNFTGNIPPEIGNLSKIK 483

Query: 465 TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK 524
            LN+SHN LTG I  TF NLK+ ESLDLSYNKL G+IPP+L EL +L VFSVAHN LSGK
Sbjct: 484 ALNLSHNSLTGPIPPTFWNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGK 543

Query: 525 TPDWVAQFATFNGSSYDGNPFL------------------SSSCNGED-DSLIDMNNFYI 565
           TP  VAQFATF+ S Y  NPFL                   +S N ED    ++M  FY+
Sbjct: 544 TPARVAQFATFDESCYKDNPFLCGEPLPKICAAVMPPSSTPTSTNNEDHGGFMNMEVFYV 603

Query: 566 IFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATL 614
            F V+Y++V+L I  VLY+NPY  R WF+F+E  +  CY+F ++NL  L
Sbjct: 604 TFWVAYIMVLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLVDNLPIL 652

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 279/703 (39%), Positives = 391/703 (55%), Gaps = 120/703 (17%)

Query: 6   IELHNLT--NLENLTLDNSFFH----VSLLQSIAVFGPWM------VQCFIGFRAMD--- 50
           ++L NL   +L  +TL+NS F     ++ L+++ + G  +       Q F+  + ++   
Sbjct: 244 LDLKNLEYLDLSYITLNNSIFQAIRTMTSLKTLNLMGCSLNGQIPTTQGFLNLKNLEYLD 303

Query: 51  --GTALDKNFLQVIKSMTSLKLLSLSNSRLNGTI-LDQGLCEFVHLQELHVDHNNLYGVP 107
                LD N LQ I +MTSLK LSLS+ +LN  I   QGLC+  HLQ L++  N+L G  
Sbjct: 304 LSDNTLDNNILQTIGTMTSLKTLSLSSCKLNIQIPTTQGLCDLNHLQVLYMYDNDLSGFL 363

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
           P CL N+TSLQ                          L LS N+F+IP+SL PLYN S L
Sbjct: 364 PPCLANLTSLQ-------------------------RLDLSYNHFKIPMSLRPLYNLSKL 398

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSH-GSGV-TFPKFLYHQHDLKHVNLSHINL 225
           K FD  +N+I+A+ + H+L+PKFQL S+ LS  G G    PKFLYHQ +L+ ++L++I +
Sbjct: 399 KSFDGSSNEIFAEEDDHNLSPKFQLESLYLSSIGQGARALPKFLYHQFNLQFLDLTNIQI 458

Query: 226 RGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV---GN 282
           +GEFPNWL ENNT LQ L   N  LSG F +PK++  +L+ L +S N FQ  IP     +
Sbjct: 459 QGEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSILSISMNHFQGQIPSEIGAH 518

Query: 283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDG 342
           +  L VL +S N   G IP  L     SL++L LSNN ++G I     N+++L  L L G
Sbjct: 519 LPGLEVLFMSDNGFNGSIPFSLG-NISSLQWLDLSNNILQGQIPGWIGNMSSLEFLDLSG 577

Query: 343 NHFIGEIPES-----------LSNCNLFG-------------GLYLSDNHLSGKIPRWLG 378
           N+F G +P             LS   L G              L LS N+L+G+IP+W+ 
Sbjct: 578 NNFSGRLPPRFGTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFALDLSHNNLTGRIPKWID 637

Query: 379 NLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC-------------F 425
            LS    +++  N+LEG IP++  +L+ L ++D+S  ++ G++ S              F
Sbjct: 638 RLSNLRFLLLSYNNLEGEIPIQLSRLDQLILIDLSHNHLSGNILSWMISTHNFPVESTYF 697

Query: 426 NPFSIK---------------QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSH 470
           +  +I                +G  +    G+D SCN  TGEIP  IGNL+ I  LN+SH
Sbjct: 698 DFLAISHQSFEFTTKNVSLSYRGDIIWYFKGIDFSCNNFTGEIPPEIGNLSMIKVLNLSH 757

Query: 471 NKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVA 530
           N LTG I  TFSNLK+ ESLDLSYNKL G+IPP+L EL +L VFSVAHN LSG TP  VA
Sbjct: 758 NSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGNTPVRVA 817

Query: 531 QFATFNGSSYDGNPFL-------------------SSSCNGEDDSLIDMNNFYIIFAVSY 571
           QFATF  + Y  NPFL                   +S+ N ++   +D+  FY+ F V+Y
Sbjct: 818 QFATFEENCYKDNPFLCGEPLPKICGAAMSPSPTPTSTNNKDNGGFMDIEVFYVTFWVAY 877

Query: 572 VIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATL 614
           ++V+L I  VLY+NPY  R WF+F+E  +  CY+F ++NL+ L
Sbjct: 878 IMVLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLVDNLSIL 920

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 272/714 (38%), Positives = 373/714 (52%), Gaps = 137/714 (19%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIG------------------F 46
           ++E  NL++LE L LD S      LQ +A   P ++  F+                   +
Sbjct: 237 ILEFQNLSSLEYLYLDGSSLDEHSLQGLAT-PPSLIHLFLEDLGGVVPSRGFLNLKNLEY 295

Query: 47  RAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGV 106
             ++ ++LD +    I +MTSLK+L L++  LNG I            +LH+ HN+L G 
Sbjct: 296 LDLERSSLDNSIFHTIGTMTSLKILYLTDCSLNGQIP-------TAQDKLHMYHNDLSGF 348

Query: 107 PPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSN 166
            P CL N+TSLQ                          L LS+N+ +IP+SL PLYN S 
Sbjct: 349 LPPCLANLTSLQ-------------------------HLDLSSNHLKIPVSLSPLYNLSK 383

Query: 167 LKIFDSENNQIYAQTESHSLTPKFQLNSIILS-HGSGV-TFPKFLYHQHDLKHVNLSHIN 224
           L  FD   N+IYA+ E H+L+PKFQL  + LS  G G   FPKFLYHQ +L++V+L++I 
Sbjct: 384 LNYFDGSGNEIYAEEEDHNLSPKFQLEFLYLSSRGQGPGAFPKFLYHQVNLQYVDLTNIQ 443

Query: 225 LRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV---G 281
           ++GEFPNWL ENNT LQ L   N  L+G F +PK++  +L +L +S N+FQ  IP     
Sbjct: 444 MKGEFPNWLIENNTYLQELHLENCSLTGPFLLPKNSHVNLLFLSISVNYFQGQIPSEIGA 503

Query: 282 NMKSLSVLDLSKNRLIGKIPERLA---------MGCFSLRYLVLSNNKMKGHIFSKKINL 332
            +  L VL +S N   G IP  L          M    L   +LSNN ++G I     N+
Sbjct: 504 YLPRLEVLLMSDNGFNGTIPSSLGNMSSLQVLDMFANVLTGRILSNNSLQGQIPGWIGNM 563

Query: 333 TNLWRLQLDGNHFIGEIPE-----------SLSNCNLFG-------------GLYLSDNH 368
           ++L  L L GN+F G +P            SLS   L G              L LS N 
Sbjct: 564 SSLEFLDLSGNNFSGPLPPRFGTSSKLRYVSLSRNKLHGPIAIAFYNSSKIEALDLSHND 623

Query: 369 LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF--- 425
           L+G+IP W+G  S    +++  N+ EG IP++ C+L+ L ++D+S   +FG++ S     
Sbjct: 624 LTGRIPEWIGRQSNLRFLLLSYNNFEGEIPIQLCRLDQLTLIDLSHNYLFGNILSWMISS 683

Query: 426 NPFSIK------------------------QGKPLNSMSGLDLSCNKLTGEIPLRIGNLT 461
           +P  I                         +G  +    G+D S N  TGEIP  IGNL+
Sbjct: 684 SPLGISNSHDSVSSSQQSFEFTTKNVSLSYRGDIIRYFKGIDFSRNNFTGEIPPEIGNLS 743

Query: 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKL 521
            I  LN+SHN LTG I  TFSNLK+ ESLDLSYNKL G+IPP+L EL  L  FSVAHN L
Sbjct: 744 GIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFFLEFFSVAHNNL 803

Query: 522 SGKTPDWVAQFATFNGSSYDGNPFL--------------------SSSCNGEDD-SLIDM 560
           SGKTP  VAQFATF  S Y  NPFL                    S++ N +D+   +DM
Sbjct: 804 SGKTPTRVAQFATFEESCYKENPFLCGEPLPKICGVVMPPSPTPSSTNKNNKDNCGFVDM 863

Query: 561 NNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFALNNLATL 614
             FY+ F V+Y++V+L +  V Y+NPY  + WFYF+E  +  CY+F ++NL  L
Sbjct: 864 EVFYVTFGVAYIMVLLVMGVVFYINPYWRQAWFYFIEVSLNNCYYFIMDNLPIL 917

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.715	0.466	0.357	2.3e-55
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.761	0.479	0.335	1.1e-52
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.712	0.502	0.341	7.1e-50
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.689	0.464	0.336	2.9e-48
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.650	0.450	0.356	1.3e-44
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.682	0.377	0.320	6.4e-44
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.697	0.395	0.315	1.3e-43
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.696	0.389	0.305	7.4e-43
TAIR|locus:2102499	964	AT3G56370 [Arabidopsis thalian	0.705	0.460	0.307	1.1e-42
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.761	0.495	0.299	1.7e-42

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 173/484 (35%), Positives = 262/484 (54%)

Query:    83 LDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSI 142
             +  G+CE  ++QEL +  N L G  P CL ++T L+VL++SSN+LTG + S  L  L+S+
Sbjct:   236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSL 294

Query:   143 QELKLSNNYFQIPISLGPLYNHSNLKIFD--SENNQIYAQTESHSLTPKFQLNSIILSHG 200
             + L L +N F+   S G L N SNL +    S+++ +   +ES S  PKFQL+ I L   
Sbjct:   295 EYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSES-SWKPKFQLSVIALRSC 353

Query:   201 SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHA 260
             +    P FL HQ DL+HV+LS  N+ G+ P+WL  NNTKL+ L+  NN  +  FQ+PK A
Sbjct:   354 NMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQIPKSA 412

Query:   261 RRHLTYLDVSDNFFQVHIP--VGNM-KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLS 317
               +L +LDVS N F    P  +G +   L  L+ SKN     +P  L      ++Y+ LS
Sbjct:   413 H-NLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLG-NMNGIQYMDLS 470

Query:   318 NNKMKGHIFSKKIN-LTNLWRLQLDGNHFIGEI-PESLSNCNLFGGLYLSDNHLSGKIPR 375
              N   G++    +N   ++  L+L  N   GEI PES +  N+ G L++ +N  +GKI +
Sbjct:   471 RNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILG-LFMDNNLFTGKIGQ 529

Query:   376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP-SCFNPFSIKQ-G 433
              L +L   E + M NN+L G IP    +L  L  L IS   + G +P S FN  S++   
Sbjct:   530 GLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLD 589

Query:   434 KPLNSMSGL-----D--------LSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST 480
                NS+SG+     D        L  NKL+G IP  +  L  +  L++ +N+ +G I   
Sbjct:   590 LSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTL--LANVEILDLRNNRFSGKI-PE 646

Query:   481 FSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNG--- 537
             F N++    L L  N  TG+IP QL  L+ + +  +++N+L+G  P  ++  +   G   
Sbjct:   647 FINIQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKEC 706

Query:   538 SSYD 541
             +SYD
Sbjct:   707 TSYD 710

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.1e-52, P = 1.1e-52
 Identities = 179/533 (33%), Positives = 269/533 (50%)

Query:   117 LQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPIS-LGPLYNHSNLKIFDSE 173
             L  +N++ N   GN+ S  L ++KSI+ L LS+N F  ++P   L   YN + LK+  ++
Sbjct:   454 LVCVNLAYNGFQGNLPSS-LDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNK 512

Query:   174 -NNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
              + +++ +  + +      +++ + +   G  F         L  +++S+  L G  P+W
Sbjct:   513 LSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSL----PSLNVLDISNNKLTGVIPSW 568

Query:   233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLD 290
             + E    L  L   NN L G          +L  LD+S N     IP  V ++   +VL 
Sbjct:   569 IGERQG-LFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLL 627

Query:   291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP 350
             L  N L G IP+ L +    L    L NN++ G++  + IN  N+  L L GN+F G+IP
Sbjct:   628 LQNNNLSGVIPDTLLLNVIVLD---LRNNRLSGNL-PEFINTQNISILLLRGNNFTGQIP 683

Query:   351 E---SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLN-- 405
                 SLSN  L   L LS+N  +G IP  L N S    +   ++     +P  F      
Sbjct:   684 HQFCSLSNIQL---LDLSNNKFNGSIPSCLSNTSFG--LRKGDDSYRYDVPSRFGTAKDP 738

Query:   406 --FLQILDISKKNIFGSLPSCFN-PFSIKQ------GKPLNSMSGLDLSCNKLTGEIPLR 456
               F  +L I + N+     S     F+ K       G  L  + G+DLS N+L+GEIP+ 
Sbjct:   739 VYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVE 798

Query:   457 IGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSV 516
             +G L  +  LN+SHN L+G+IL +FS LK  ESLDLS+N+L G IP QL ++ +LAVF+V
Sbjct:   799 LGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNV 858

Query:   517 AHNKLSGKTPDWVAQFATFNGSSYDGNPFLSS-----SC---------NG--EDDSLIDM 560
             ++N LSG  P    QF TF   SY GNP L       SC         NG   D+S +DM
Sbjct:   859 SYNNLSGIVPQG-RQFNTFETQSYFGNPLLCGKSIDISCASNNFHPTDNGVEADESTVDM 917

Query:   561 NNFYIIFAVSYVIVILGIDGVL-YVNPYSGRRWFYFVESWMTTCYHFALNNLA 612
              +FY  F  +YV ++LGI   L + +P+S R WFY V++++    +    N A
Sbjct:   918 ESFYWSFVAAYVTILLGILASLSFDSPWS-RAWFYIVDAFVLKVRNMLWQNTA 969

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 7.1e-50, P = 7.1e-50
 Identities = 165/483 (34%), Positives = 249/483 (51%)

Query:    79 NGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH 138
             +G++  QG+C    LQEL +  N   G  P C    + L+VL++SSN L+G I    +  
Sbjct:   166 SGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISD 224

Query:   139 LKSIQELKLSNNYFQIPISLGPLYNHSNLKIF--DSENNQIYAQTESHSLTPKFQLNSII 196
              KS++ L L +N F+   SLG +   + LK+F   S +  +     + S   + QL+SI+
Sbjct:   225 FKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIM 284

Query:   197 LSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQM 256
             LSH +    P FL++Q +L+ ++LS+  L G FP WL ENNT+LQ L+  NN    +  +
Sbjct:   285 LSHCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFKTL-TL 343

Query:   257 PKHARRHLTYLDVSDNFFQVHIP--VGN-MKSLSVLDLSKNRLIGKIPERLAMGCFSLRY 313
             P+  RR L  LD+S N F   +P  VG  + SL  L+LS N  +G +P  +A    ++ +
Sbjct:   344 PRTMRR-LQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMAR-MENIEF 401

Query:   314 LVLSNNKMKG----HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHL 369
             + LS N   G    ++F+   +L+  W L+L  N F G I    S+      L + +N  
Sbjct:   402 MDLSYNNFSGKLPRNLFTGCYSLS--W-LKLSHNRFSGPIIRKSSDETSLITLIMDNNMF 458

Query:   370 SGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP-SCFN-P 427
             +GKIPR L NL +   + + NN L G IP       FL++L IS   + G++P S FN P
Sbjct:   459 TGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIP 517

Query:   428 F--------SIKQGK-PLNSMSG----LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474
             +        +   G  PL S S     LDL  N LTG IP  +    R+  L++ +NKL+
Sbjct:   518 YLWLLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIPDTLWYGLRL--LDLRNNKLS 575

Query:   475 GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFAT 534
             G I   F +      + L  N LTGKIP +L  L+ + +   AHN+L+   P  V   + 
Sbjct:   576 GNI-PLFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSF 634

Query:   535 FNG 537
              +G
Sbjct:   635 GSG 637

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 156/463 (33%), Positives = 236/463 (50%)

Query:    79 NGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH 138
             +G I  +  C+  +L++L +  N+  G  P CLG++  L+VL++SSNQL+G++ S     
Sbjct:   234 DGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSS-FSS 292

Query:   139 LKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILS 198
             L+S++ L LS+N F    SL PL N +NLK           +  S  L  K +L  + LS
Sbjct:   293 LESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQK-KLRLVDLS 351

Query:   199 HG--SGVTFPKFLYHQH-DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIF- 254
                 SG   P +L   + +L+ + L + N    FP     +N ++      NN   G F 
Sbjct:   352 SNNLSG-NIPTWLLTNNPELEVLQLQN-NSFTIFPIPTMVHNLQIFDF-SANNI--GKFP 406

Query:   255 QMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLR 312
                 HA  +L  L+ S+N FQ + P  +G MK++S LDLS N   GK+P     GC S+ 
Sbjct:   407 DKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIM 466

Query:   313 YLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK 372
             +L LS+NK  G    ++ N  +L  L++D N F G I   LSN  +   L +S+N LSG 
Sbjct:   467 FLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGA 526

Query:   373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ 432
             IPRWL      + V++ NN LEG IP     + FL  LD+S     G+LPS         
Sbjct:   527 IPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPS--------- 577

Query:   433 GKPLNSMSGLD--LSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESL 490
                ++S  G+   L  N  TG IP  +  L  +  L++ +NKL+G I   F + +    L
Sbjct:   578 --HVDSELGIYMFLHNNNFTGPIPDTL--LKSVQILDLRNNKLSGSI-PQFDDTQSINIL 632

Query:   491 DLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA 533
              L  N LTG IP +L +L+ + +  ++ NKL+G  P  ++  +
Sbjct:   633 LLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLS 675

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.3e-44, P = 1.3e-44
 Identities = 156/438 (35%), Positives = 221/438 (50%)

Query:    85 QGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQE 144
             Q  CE  +LQEL +   N  G  P C GN+  L+ L++SSNQLTGNI  P    L+S++ 
Sbjct:   214 QVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIP-PSFSSLESLEY 272

Query:   145 LKLSNNYFQIPISLGPLYNHSNLK--IFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG 202
             L LS+N F+   SL PL N + LK  IF S+++ +  + ES +  P FQL+ ++L   S 
Sbjct:   273 LSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIES-TWQPLFQLSVLVLRLCSL 331

Query:   203 VTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARR 262
                P FL +Q +L  V+LS   + G  P WL ENN +L+ L   NN  + IFQMP     
Sbjct:   332 EKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVH- 389

Query:   263 HLTYLDVSDNFFQVHIP--VGN-MKSLSVLDLSKNRLIGKIPERLAMG-CFSLRYLVLSN 318
             +L  LD S+N      P   G  + +L  ++ S N   G  P   +MG  +++ +L LS 
Sbjct:   390 NLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPS--SMGEMYNISFLDLSY 447

Query:   319 NKMKGHIFSKKINLT-NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWL 377
             N + G +    ++   +L  LQL  N F G      +N      L +++N  +GKI   +
Sbjct:   448 NNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIG--V 505

Query:   378 GNLSVSEDVI--MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF---NPFSIKQ 432
             G L++ +  I  M NN LEG +P       +L  LD+S   + G+LPS     N   +  
Sbjct:   506 GLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNVLFLHN 565

Query:   433 GK---P-----LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
                  P     L S+  LDL  NKL+G IP  + +   I  L +  N LTG I ST    
Sbjct:   566 NNFTGPIPDTFLGSIQILDLRNNKLSGNIPQFV-DTQDISFLLLRGNSLTGYIPSTLCEF 624

Query:   485 KQTESLDLSYNKLTGKIP 502
              +   LDLS NKL G IP
Sbjct:   625 SKMRLLDLSDNKLNGFIP 642

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 145/452 (32%), Positives = 227/452 (50%)

Query:    93 LQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF 152
             LQ L +  N + G  P  L N+ SL+ L++S N  +G I  P + +LK ++ELKL+NN  
Sbjct:   310 LQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIP-PDIGNLKRLEELKLANNSL 368

Query:   153 --QIPISLGPLYNHSNLKIFDSENNQIYAQT-ESHSLTPKFQLNSIILSHGSGVTFPKFL 209
               +IP+ +       +L + D E N +  Q  E        ++ S+  +  SG   P  +
Sbjct:   369 TGEIPVEIKQC---GSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYV-PSSM 424

Query:   210 YHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDV 269
              +   L+ +NL   NL G FP  L    T L  L    N  SG   +      +L++L++
Sbjct:   425 VNLQQLERLNLGENNLNGSFPVELMAL-TSLSELDLSGNRFSGAVPVSISNLSNLSFLNL 483

Query:   270 SDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFS 327
             S N F   IP  VGN+  L+ LDLSK  + G++P  L+ G  +++ + L  N   G +  
Sbjct:   484 SGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELS-GLPNVQVIALQGNNFSGVVPE 542

Query:   328 KKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI 387
                +L +L  + L  N F GEIP++     L   L LSDNH+SG IP  +GN S  E + 
Sbjct:   543 GFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLE 602

Query:   388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCN 447
             + +N L G IP +  +L  L++LD+ + N+ G +P    P  I Q   LNS+S   L  N
Sbjct:   603 LRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIP----P-EISQSSSLNSLS---LDHN 654

Query:   448 KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQT-ESLDLSYNKLTGKIPPQL- 505
              L+G IP     L+ +  +++S N LTG I ++ + +       ++S N L G+IP  L 
Sbjct:   655 HLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLG 714

Query:   506 VELNALAVFSVAHNKLSGKTPDWVAQFATFNG 537
               +N  + FS  + +L GK  +   + +T  G
Sbjct:   715 SRINNTSEFS-GNTELCGKPLNRRCESSTAEG 745

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 471 (170.9 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 149/473 (31%), Positives = 223/473 (47%)

Query:   101 NNLY--GVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPI 156
             NN +  G+PP  LGN TSL+     S  L+G I S     L  +  L L+ N+F  +IP 
Sbjct:   269 NNQFTGGLPPG-LGNCTSLREFGAFSCALSGPIPSC-FGQLTKLDTLYLAGNHFSGRIPP 326

Query:   157 SLGPLYNHSNLKIFDSENNQIYAQTESH-SLTPKFQLNSIILSHGSGVTFPKFLYHQHDL 215
              LG   +  +L++   + NQ+  +      +  + Q   +  ++ SG   P  ++    L
Sbjct:   327 ELGKCKSMIDLQL---QQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEV-PLSIWKIQSL 382

Query:   216 KHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ 275
             + + L   NL GE P  ++E   +L +L    N+ +G+      A   L  LD++ N F 
Sbjct:   383 QSLQLYQNNLSGELPVDMTELK-QLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFT 441

Query:   276 VHIPVG--NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLT 333
              HIP    + K L  L L  N L G +P  L  GC +L  L+L  N ++G +    +   
Sbjct:   442 GHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLG-GCSTLERLILEENNLRGGL-PDFVEKQ 499

Query:   334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL 393
             NL    L GN+F G IP SL N      +YLS N LSG IP  LG+L   E + + +N L
Sbjct:   500 NLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNIL 559

Query:   394 EGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPF-----------SIKQGKPL-----N 437
             +G +P E    + L  LD S   + GS+PS                S   G P      N
Sbjct:   560 KGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIPTSLFQSN 619

Query:   438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
              +  L L  N L G+IP  +G L  + +LN+S NKL G +      LK  E LD+S+N L
Sbjct:   620 KLLNLQLGGNLLAGDIP-PVGALQALRSLNLSSNKLNGQLPIDLGKLKMLEELDVSHNNL 678

Query:   498 TGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSC 550
             +G +   L  + +L   +++HN  SG  P  + +F   + +S+ GN  L  +C
Sbjct:   679 SGTLRV-LSTIQSLTFINISHNLFSGPVPPSLTKFLNSSPTSFSGNSDLCINC 730

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 7.4e-43, P = 7.4e-43
 Identities = 140/459 (30%), Positives = 221/459 (48%)

Query:    91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNN 150
             V LQE+ +  N   G  P  +GN+TSL+ L +  N L G I S  + ++KS+++L L  N
Sbjct:   253 VKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSE-IGNMKSLKKLYLYQN 311

Query:   151 YFQ--IPISLGPLYNHSNLKIFDSENNQIYAQTESH-SLTPKFQLNSIILSHGSGVTFPK 207
                  IP  LG L   S +   D   N +  +     S   + +L  +  +  +G+  P 
Sbjct:   312 QLNGTIPKELGKL---SKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGI-IPN 367

Query:   208 FLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYL 267
              L    +L  ++LS  +L G  P    +N T ++ L   +N LSG+          L  +
Sbjct:   368 ELSKLRNLAKLDLSINSLTGPIPPGF-QNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVV 426

Query:   268 DVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI 325
             D S+N     IP  +    +L +L+L  NR+ G IP  + + C SL  L +  N++ G  
Sbjct:   427 DFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGV-LRCKSLLQLRVVGNRLTGQF 485

Query:   326 FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED 385
              ++   L NL  ++LD N F G +P  +  C     L+L+ N  S  +P  +  LS    
Sbjct:   486 PTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVT 545

Query:   386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS 445
               + +N L GPIP E      LQ LD+S+ +  GSLP    P   + G  L+ +  L LS
Sbjct:   546 FNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLP----P---ELGS-LHQLEILRLS 597

Query:   446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTE-SLDLSYNKLTGKIPPQ 504
              N+ +G IP  IGNLT +  L +  N  +G I      L   + +++LSYN  +G+IPP+
Sbjct:   598 ENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPE 657

Query:   505 LVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGN 543
             +  L+ L   S+ +N LSG+ P      ++  G ++  N
Sbjct:   658 IGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYN 696

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2102499 AT3G56370 [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.1e-42, P = 1.1e-42
 Identities = 150/488 (30%), Positives = 242/488 (49%)

Query:    83 LDQGLCEFVHLQELHVDHNNLYGV-PPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKS 141
             + +GL +   L +L + +NNL G+  P  L ++ +L+V+++SSN L+G++     +   S
Sbjct:    85 IGRGLLQLQFLHKLSLSNNNLTGIINPNMLLSLVNLKVVDLSSNGLSGSLPDEFFRQCGS 144

Query:   142 IQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSH 199
             ++ L L+ N    +IP+S+    + + L +  S N   ++ +    +     L S+ LS 
Sbjct:   145 LRVLSLAKNKLTGKIPVSISSCSSLAALNL--SSNG--FSGSMPLGIWSLNTLRSLDLSR 200

Query:   200 GS--GVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMP 257
                 G  FP+ +   ++L+ ++LS   L G  P+ +  +   L+T+    N LSG   +P
Sbjct:   201 NELEG-EFPEKIDRLNNLRALDLSRNRLSGPIPSEIG-SCMLLKTIDLSENSLSG--SLP 256

Query:   258 KHARR-HLTY-LDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRY 313
                ++  L Y L++  N  +  +P  +G M+SL  LDLS N+  G++P+ +     +L+ 
Sbjct:   257 NTFQQLSLCYSLNLGKNALEGEVPKWIGEMRSLETLDLSMNKFSGQVPDSIG-NLLALKV 315

Query:   314 LVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP-----------ESLSNCNLFGG- 361
             L  S N + G +     N  NL  L L GN   G++P            +L N N  GG 
Sbjct:   316 LNFSGNGLIGSLPVSTANCINLLALDLSGNSLTGKLPMWLFQDGSRDVSALKNDNSTGGI 375

Query:   362 -----LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN 416
                  L LS N  SG+I   LG+L   E + +  N L GPIP    +L  L +LD+S   
Sbjct:   376 KKIQVLDLSHNAFSGEIGAGLGDLRDLEGLHLSRNSLTGPIPSTIGELKHLSVLDVSHNQ 435

Query:   417 IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
             + G +P        + G  + S+  L L  N L G IP  I N + + +L +SHNKL G 
Sbjct:   436 LNGMIPR-------ETGGAV-SLEELRLENNLLEGNIPSSIKNCSSLRSLILSHNKLLGS 487

Query:   477 ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
             I    + L + E +DLS+N+L G +P QL  L  L  F+++HN L G+ P     F   +
Sbjct:   488 IPPELAKLTRLEEVDLSFNELAGTLPKQLANLGYLHTFNISHNHLFGELPAG-GIFNGLS 546

Query:   537 GSSYDGNP 544
              SS  GNP
Sbjct:   547 PSSVSGNP 554

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-42, P = 1.7e-42
 Identities = 151/504 (29%), Positives = 239/504 (47%)

Query:    80 GTILDQ-GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH 138
             G I D+ G C    L  L +  N LYG  P+ +  +  L+ LN+ +NQLTG + +  L  
Sbjct:   109 GQIPDEIGNC--ASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPAT-LTQ 165

Query:   139 LKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESH--SLTPKFQLNSII 196
             + +++ L L+ N+    IS   LY +  L+      N +     S    LT  +  +  +
Sbjct:   166 IPNLKRLDLAGNHLTGEISR-LLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFD--V 222

Query:   197 LSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQM 256
               +    T P+ + +    + +++S+  + GE P   +    ++ TL    N L+G    
Sbjct:   223 RGNNLTGTIPESIGNCTSFQILDISYNQITGEIP--YNIGFLQVATLSLQGNRLTGRIPE 280

Query:   257 PKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYL 314
                  + L  LD+SDN     IP  +GN+     L L  N L G IP  L      L YL
Sbjct:   281 VIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELG-NMSRLSYL 339

Query:   315 VLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIP 374
              L++NK+ G I  +   L  L+ L L  N  +G IP ++S+C       +  N LSG IP
Sbjct:   340 QLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIP 399

Query:   375 RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGK 434
                 NL     + + +N+ +G IP+E   +  L  LD+S  N  GS+P       +  G 
Sbjct:   400 LAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIP-------LTLGD 452

Query:   435 PLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494
              L  +  L+LS N L+G++P   GNL  I  ++VS N L+G+I +    L+   SL L+ 
Sbjct:   453 -LEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNN 511

Query:   495 NKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGED 554
             NKL GKIP QL     L   +V+ N LSG  P  +  F+ F  +S+ GNP+L  +  G  
Sbjct:   512 NKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPP-MKNFSRFAPASFVGNPYLCGNWVGSI 570

Query:   555 DSLIDMNNFYIIFAVSYVIVILGI 578
                +  +  +   A+  + ++LG+
Sbjct:   571 CGPLPKSRVFSRGAL--ICIVLGV 592

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	629
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (471), Expect = 2e-49
 Identities = 154/491 (31%), Positives = 239/491 (48%), Gaps = 53/491 (10%)

Query: 68  LKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQL 127
           ++ ++LSN++L+G I D        L+ L++ +NN  G  P   G++ +L+ L++S+N L
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNML 152

Query: 128 TGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
           +G I +  +    S++ L L  N    +IP SL    N ++L+     +NQ+  Q     
Sbjct: 153 SGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLT---NLTSLEFLTLASNQLVGQI-PRE 207

Query: 186 LTPKFQLNSIILSHG--SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL 243
           L     L  I L +   SG   P  +     L H++L + NL G  P+ L  N   LQ L
Sbjct: 208 LGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYL 265

Query: 244 VQVNNYLSGIFQMPKH--ARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGK 299
               N LSG   +P    + + L  LD+SDN     IP  V  +++L +L L  N   GK
Sbjct: 266 FLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 300 IPERLAMGCFSLRYLVLSNNKMKGHI---FSKKINLT---------------------NL 335
           IP  L      L+ L L +NK  G I     K  NLT                     NL
Sbjct: 324 IPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 336 WRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG 395
           ++L L  N   GEIP+SL  C     + L DN  SG++P     L +   + + NN+L+G
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Query: 396 PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPL 455
            I      +  LQ+L +++   FG LP  F    ++          LDLS N+ +G +P 
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN---------LDLSRNQFSGAVPR 493

Query: 456 RIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFS 515
           ++G+L+ +  L +S NKL+G I    S+ K+  SLDLS+N+L+G+IP    E+  L+   
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 516 VAHNKLSGKTP 526
           ++ N+LSG+ P
Sbjct: 554 LSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (361), Expect = 1e-35
 Identities = 104/293 (35%), Positives = 152/293 (51%), Gaps = 18/293 (6%)

Query: 240 LQTLVQVNNYLSGIFQMPK---HARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRL 296
           +QT+   NN LSG   +P         L YL++S+N F   IP G++ +L  LDLS N L
Sbjct: 95  IQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML 152

Query: 297 IGKIPERLAMGCFS-LRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSN 355
            G+IP    +G FS L+ L L  N + G I +   NLT+L  L L  N  +G+IP  L  
Sbjct: 153 SGEIP--NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210

Query: 356 CNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK 415
                 +YL  N+LSG+IP  +G L+    + +  N+L GPIP     L  LQ L + + 
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 416 NIFGSLP-SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474
            + G +P S F+         L  +  LDLS N L+GEIP  +  L  +  L++  N  T
Sbjct: 271 KLSGPIPPSIFS---------LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 475 GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
           G I    ++L + + L L  NK +G+IP  L + N L V  ++ N L+G+ P+
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  124 bits (314), Expect = 1e-29
 Identities = 121/386 (31%), Positives = 183/386 (47%), Gaps = 34/386 (8%)

Query: 65  MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
           M SLK + L  + L+G I  + +     L  L + +NNL G  P  LGN+ +LQ L +  
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTE 182
           N+L+G I  P +  L+ +  L LS+N    +IP  +  L N   L +F   NN       
Sbjct: 270 NKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF--SNNFTGKIPV 326

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWL--SENNTKL 240
           + +  P+ Q+  +  +  SG   PK L   ++L  ++LS  NL GE P  L  S N  KL
Sbjct: 327 ALTSLPRLQVLQLWSNKFSG-EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 241 ------------------QTLVQV---NNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP 279
                             ++L +V   +N  SG           + +LD+S+N  Q  I 
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445

Query: 280 VG--NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR 337
               +M SL +L L++N+  G +P+  + G   L  L LS N+  G +  K  +L+ L +
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503

Query: 338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI 397
           L+L  N   GEIP+ LS+C     L LS N LSG+IP     + V   + +  N L G I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 398 PMEFCQLNFLQILDISKKNIFGSLPS 423
           P     +  L  ++IS  ++ GSLPS
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  123 bits (311), Expect = 3e-29
 Identities = 89/249 (35%), Positives = 118/249 (47%), Gaps = 34/249 (13%)

Query: 286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
           +  ++LS N+L G IP+ +     SLRYL LSNN   G I    I   NL  L L  N  
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNML 152

Query: 346 IGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLN 405
            GEIP  + + +    L L  N L GKIP  L NL+  E + + +N L G IP E  Q+ 
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHT 465
            L       K I+                         L  N L+GEIP  IG LT ++ 
Sbjct: 213 SL-------KWIY-------------------------LGYNNLSGEIPYEIGGLTSLNH 240

Query: 466 LNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKT 525
           L++ +N LTG I S+  NLK  + L L  NKL+G IPP +  L  L    ++ N LSG+ 
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 526 PDWVAQFAT 534
           P+ V Q   
Sbjct: 301 PELVIQLQN 309

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  122 bits (308), Expect = 7e-29
 Identities = 120/416 (28%), Positives = 171/416 (41%), Gaps = 63/416 (15%)

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172
           N + +  +++S   ++G ISS     L  IQ + LSNN    PI                
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIP--------------- 110

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
             + I+  + S                               L+++NLS+ N  G  P  
Sbjct: 111 --DDIFTTSSS-------------------------------LRYLNLSNNNFTGSIPRG 137

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLD 290
              N   L+TL   NN LSG       +   L  LD+  N     IP  + N+ SL  L 
Sbjct: 138 SIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194

Query: 291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP 350
           L+ N+L+G+IP  L     SL+++ L  N + G I  +   LT+L  L L  N+  G IP
Sbjct: 195 LASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Query: 351 ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQIL 410
            SL N      L+L  N LSG IP  + +L     + + +N L G IP    QL  L+IL
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 411 DISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSH 470
            +   N  G +P             L  +  L L  NK +GEIP  +G    +  L++S 
Sbjct: 314 HLFSNNFTGKIPVALT--------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 471 NKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
           N LTG I     +      L L  N L G+IP  L    +L    +  N  SG+ P
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 2e-17
 Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 11/177 (6%)

Query: 361 GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNIFG 419
            + LS  ++SGKI   +  L   + + + NN L GPIP + F   + L+ L++S  N  G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 420 SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS 479
           S+P    P          ++  LDLS N L+GEIP  IG+ + +  L++  N L G I +
Sbjct: 133 SIPRGSIP----------NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 480 TFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
           + +NL   E L L+ N+L G+IP +L ++ +L    + +N LSG+ P  +    + N
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 32/88 (36%), Positives = 47/88 (53%)

Query: 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
           + GL L    L G IP  I  L  + ++N+S N + G I  +  ++   E LDLSYN   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 499 GKIPPQLVELNALAVFSVAHNKLSGKTP 526
           G IP  L +L +L + ++  N LSG+ P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 71  LSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGN 130
           L L N  L G I +  + +  HLQ +++  N++ G  P  LG++TSL+VL++S N   G+
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 131 ISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNH 164
           I    L  L S++ L L+ N    ++P +LG    H
Sbjct: 482 IPE-SLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 27/109 (24%)

Query: 247 NNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV--GNMKSLSVLDLSKNRLIGKIPERL 304
           N  L G         RHL  +++S N  + +IP   G++ SL VLDLS N   G IPE L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 305 AMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESL 353
                                      LT+L  L L+GN   G +P +L
Sbjct: 487 G-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
           L  +  ++LS N + G IP  +G++T +  L++S+N   G I  +   L     L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 496 KLTGKIPPQL 505
            L+G++P  L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
           I  L + +  L G I +  S L+  +S++LS N + G IPP L  + +L V  +++N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 523 GKTPDWVAQFATFNGSSYDGNPFLS 547
           G  P+ + Q  +    + +GN  LS
Sbjct: 480 GSIPESLGQLTSLRILNLNGN-SLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 92  HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
           +L+ L + +N L  +P      + +L+VL++S N LT  IS      L S++ L LS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 152 F 152
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 40/222 (18%)

Query: 284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN 343
            +L+ LDL  N  I  IP  + +   +L+ L LS+NK++  + S   NL NL  L L  N
Sbjct: 116 TNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173

Query: 344 HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQ 403
             + ++P+ LSN +    L LS N +S  +P  +  LS  E++ + NN +          
Sbjct: 174 D-LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI---------- 221

Query: 404 LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI 463
              +++L                         L ++SGL+LS NKL  ++P  IGNL+ +
Sbjct: 222 ---IELLSSLSN--------------------LKNLSGLELSNNKLE-DLPESIGNLSNL 257

Query: 464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL 505
            TL++S+N+++   +S+  +L     LDLS N L+  +P   
Sbjct: 258 ETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIA 297

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 289 LDLSKNRLIGKIPERLAMGCFSLRYLV---LSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
           L L    L G IP  ++     LR+L    LS N ++G+I     ++T+L  L L  N F
Sbjct: 423 LGLDNQGLRGFIPNDIS----KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 346 IGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLG 378
            G IPESL        L L+ N LSG++P  LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 27/86 (31%), Positives = 43/86 (50%)

Query: 338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI 397
           L LD     G IP  +S       + LS N + G IP  LG+++  E + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 398 PMEFCQLNFLQILDISKKNIFGSLPS 423
           P    QL  L+IL+++  ++ G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 23/115 (20%)

Query: 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL----ILSTFSNLKQ-------- 486
           +  +DLS   ++G+I   I  L  I T+N+S+N+L+G     I +T S+L+         
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 487 -----------TESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVA 530
                       E+LDLS N L+G+IP  +   ++L V  +  N L GK P+ + 
Sbjct: 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 29/85 (34%), Positives = 40/85 (47%)

Query: 314 LVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI 373
           L L N  ++G I +    L +L  + L GN   G IP SL +      L LS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 374 PRWLGNLSVSEDVIMPNNHLEGPIP 398
           P  LG L+    + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 17/251 (6%)

Query: 111 LGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF 170
           L  + SL +L+ S         +  L +L  +  L L+ N  ++  ++  L   +NL   
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSEN--LLNLLPLPSLDLNLN--RLRSNISELLELTNLTSL 121

Query: 171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFP 230
           D +NN I           K  L  + LS     + P  L +  +LK+++LS  +L     
Sbjct: 122 DLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL----- 175

Query: 231 NWLSENNTKLQTLVQVNNYLSGIFQMPKHARR--HLTYLDVSDNF-FQVHIPVGNMKSLS 287
           + L +  + L  L  ++   + I  +P        L  LD+S+N   ++   + N+K+LS
Sbjct: 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS 235

Query: 288 VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIG 347
            L+LS N+L   +PE +     +L  L LSNN++     S   +LTNL  L L GN    
Sbjct: 236 GLELSNNKLE-DLPESIG-NLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSN 291

Query: 348 EIPESLSNCNL 358
            +P       L
Sbjct: 292 ALPLIALLLLL 302

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 361 GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS 420
           GL L +  L G IP  +  L   + + +  N + G IP     +  L++LD+S  +  GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 421 LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN-LTRIHTLNVSHN 471
           +P      S+ Q   L S+  L+L+ N L+G +P  +G  L    + N + N
Sbjct: 482 IPE-----SLGQ---LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 23/56 (41%), Positives = 28/56 (50%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
           LDLS N+LT         L  +  L++S N LT +    FS L    SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKL 521
            + +L++S+N+LT +    F  L   + LDLS N LT   P     L +L    ++ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 263 HLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNN 319
           +L  LD+S+N   V IP G    + +L VLDLS N L   I      G  SLR L LS N
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGN 58

Query: 320 K 320
            
Sbjct: 59  N 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 22/249 (8%)

Query: 65  MTSLKLLSLSNSRLNGTILDQGLCEFV----------HLQELHVDHNNLYGVPPWCLGNM 114
           ++SL       + L    LD  L              +L  L +D+NN+  +PP      
Sbjct: 80  ISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLK 139

Query: 115 TSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSEN 174
           ++L+ L++S N++       PL++L +++ L LS N   +      L N SNL   D   
Sbjct: 140 SNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFN--DLSDLPKLLSNLSNLNNLDLSG 195

Query: 175 NQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLS 234
           N+I        L     L  + LS+ S +     L +  +L  + LS+ N   + P  + 
Sbjct: 196 NKISDLPPEIELLSA--LEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESI- 251

Query: 235 ENNTKLQTLVQVNNYLSGIFQMPKHA-RRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK 293
                L  L  ++   + I  +       +L  LD+S N     +P+  +  L +  L  
Sbjct: 252 ---GNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 294 NRLIGKIPE 302
             L  K  E
Sbjct: 309 LLLTLKALE 317

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	629
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03150	623	hypothetical protein; Provisional	99.5
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
PLN03150	623	hypothetical protein; Provisional	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.68
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.03
KOG4341	483	consensus F-box protein containing LRR [General fu	97.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.86
KOG4341	483	consensus F-box protein containing LRR [General fu	97.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.71
PRK15386	426	type III secretion protein GogB; Provisional	97.68
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.29
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.37
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.77
KOG4308	478	consensus LRR-containing protein [Function unknown	93.7
KOG4308	478	consensus LRR-containing protein [Function unknown	93.57
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.42
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.01
smart00370	26	LRR Leucine-rich repeats, outliers.	93.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.95
smart00370	26	LRR Leucine-rich repeats, outliers.	92.95
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.53
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.85
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.55
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	86.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.51
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	82.13

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-59  Score=541.00  Aligned_cols=524  Identities=28%  Similarity=0.381  Sum_probs=309.1

Q ss_pred             CCccchhcc-CCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhc-CCCCCCEEEccCCcC
Q 040607            1 CCSFLIELH-NLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIK-SMTSLKLLSLSNSRL   78 (629)
Q Consensus         1 ~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l   78 (629)
                      ||+|...-+ +..+++.|||++|.+.+..+..++.+      +.|++|+|++|.+.+.+|..+. .+++|++|+|++|.+
T Consensus        57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l------~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l  130 (968)
T PLN00113         57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRL------PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF  130 (968)
T ss_pred             CCcCcceecCCCCcEEEEEecCCCccccCChHHhCC------CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence            566653332 24466666666666666666555554      3566666666666666665443 666666666666666


Q ss_pred             CCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCC
Q 040607           79 NGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISL  158 (629)
Q Consensus        79 ~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~  158 (629)
                      ++.+|.   ..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|. .++++++|++|++++|.+++..+ 
T Consensus       131 ~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-  205 (968)
T PLN00113        131 TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP-  205 (968)
T ss_pred             ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-
Confidence            554443   2345566666666666555555566666666666666665544444 55666666666666665554333 


Q ss_pred             cccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccC-CCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcC
Q 040607          159 GPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHG-SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN  237 (629)
Q Consensus       159 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  237 (629)
                      ..+.++++|+.|++++|.+....+ ..+..+.+|+.|+++++ ..+.+|..+..+++|++|++++|++.+.+|..+ ..+
T Consensus       206 ~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l  283 (968)
T PLN00113        206 RELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSL  283 (968)
T ss_pred             hHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhc
Confidence            345555666666666655543222 12344455555555522 233455555555555555555555555555544 345


Q ss_pred             CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEE
Q 040607          238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLV  315 (629)
Q Consensus       238 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  315 (629)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+.+|..+.. +++|+.|+
T Consensus       284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~  362 (968)
T PLN00113        284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLD  362 (968)
T ss_pred             cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEE
Confidence            555555555555555545455555555555555555544333  444555555555555555444443332 44555555


Q ss_pred             ccCcccccccCcccCC------------------------CCCCcEEEccCCcCcccCchhhhccccCCceeccccccCC
Q 040607          316 LSNNKMKGHIFSKKIN------------------------LTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG  371 (629)
Q Consensus       316 L~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  371 (629)
                      +++|++.+..|..+..                        +++|+.|++++|.+++..|..+..++.|+.|++++|.+.+
T Consensus       363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG  442 (968)
T ss_pred             CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence            5555555444444444                        4444555555554444444444445555555555555544


Q ss_pred             CccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCC
Q 040607          372 KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG  451 (629)
Q Consensus       372 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  451 (629)
                      ..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..|..+..        +++|+.|++++|.+.+
T Consensus       443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        443 RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS--------LSELMQLKLSENKLSG  513 (968)
T ss_pred             ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh--------hhccCEEECcCCccee
Confidence            444444445555555555555544444433 2345555555555555555555544        6777888888888877


Q ss_pred             CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcccc
Q 040607          452 EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQ  531 (629)
Q Consensus       452 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  531 (629)
                      .+|..+..+++|++|+|++|.+++.+|..|.++++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|.. +.
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~  592 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GA  592 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-ch
Confidence            77777888888888888888888878888888888888888888888788888888888888888888888877763 55


Q ss_pred             ccccCCCCCCCCCCCCC
Q 040607          532 FATFNGSSYDGNPFLSS  548 (629)
Q Consensus       532 ~~~l~~l~~~~np~~c~  548 (629)
                      +.++....+.|||..|+
T Consensus       593 ~~~~~~~~~~~n~~lc~  609 (968)
T PLN00113        593 FLAINASAVAGNIDLCG  609 (968)
T ss_pred             hcccChhhhcCCccccC
Confidence            66667777888888875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.3e-59  Score=534.58  Aligned_cols=498  Identities=30%  Similarity=0.421  Sum_probs=434.1

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      .++.|++++|.+++..+.++..+++|++|+|++|.+++.+|...+..+++|++|++++|++++..|.  ..+++|++|++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L  147 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL  147 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence            5779999999999999999999999999999999999889986677999999999999999877663  56899999999


Q ss_pred             ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEec-cCC
Q 040607          123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILS-HGS  201 (629)
Q Consensus       123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~-~~~  201 (629)
                      ++|.+++.+|. .++++++|++|++++|.+.+..+ ..+.++++|++|++++|.+....+ ..+..+.+|+.|+++ +..
T Consensus       148 s~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        148 SNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             cCCcccccCCh-HHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCcc
Confidence            99999877776 89999999999999999886665 478999999999999999865443 345677899999999 445


Q ss_pred             CCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--
Q 040607          202 GVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--  279 (629)
Q Consensus       202 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--  279 (629)
                      ...+|..+..+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|  
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence            56789999999999999999999998889886 789999999999999998888889999999999999999987766  


Q ss_pred             CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607          280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF  359 (629)
Q Consensus       280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  359 (629)
                      +..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus       304 ~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        304 VIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             HcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence            78899999999999999988887665 49999999999999999999999999999999999999988888888888888


Q ss_pred             CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCcc---------
Q 040607          360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI---------  430 (629)
Q Consensus       360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---------  430 (629)
                      +.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+.+..+..+..+..         
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  462 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN  462 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCc
Confidence            88888888887777777777788888888888777777777777777777777777776655543322110         


Q ss_pred             ------ccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCcc
Q 040607          431 ------KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ  504 (629)
Q Consensus       431 ------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  504 (629)
                            ......++|+.|++++|.+++..|..+..+++|+.|+|++|.+++.+|..+.++++|++|++++|.+++.+|..
T Consensus       463 ~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence                  00112467888999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          505 LVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       505 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      |..+++|+.|++++|++++.+|..+..+..++.+++++|++.+
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999999988999999999999999876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-42  Score=337.81  Aligned_cols=334  Identities=22%  Similarity=0.245  Sum_probs=270.2

Q ss_pred             ChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCC
Q 040607          206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNM  283 (629)
Q Consensus       206 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~  283 (629)
                      |.......++++|+|.+|.|+..-.+.+ +.++.|+.|+|+.|.|+.+....|..-.++++|+|++|.++....  |..+
T Consensus       118 P~f~~~sghl~~L~L~~N~I~sv~se~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l  196 (873)
T KOG4194|consen  118 PRFGHESGHLEKLDLRHNLISSVTSEEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL  196 (873)
T ss_pred             ccccccccceeEEeeeccccccccHHHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc
Confidence            3333334457777777777764444443 677778888888888888877777777788888888888875544  7778


Q ss_pred             CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607          284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY  363 (629)
Q Consensus       284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  363 (629)
                      .+|..|.|++|+++ .+|...|+.+++|+.|+|..|+|.....-.|.++++|+.|.+..|.+.......|..+.++++|+
T Consensus       197 nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  197 NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN  275 (873)
T ss_pred             chheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence            88888888888888 88888888888888888888888766567788888888888888888877778888888888888


Q ss_pred             ccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeee
Q 040607          364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLD  443 (629)
Q Consensus       364 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~  443 (629)
                      ++.|+++..-..|+.++++|+.|++++|.+....++.+..+++|++|+++.|+++...+..+..        +..|+.|+
T Consensus       276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--------L~~Le~Ln  347 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--------LSQLEELN  347 (873)
T ss_pred             cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH--------HHHhhhhc
Confidence            8888888777888888888899999998888888888888889999999999888888877766        78888899


Q ss_pred             cccccCCCCCccccccccccceEeccCccccccccc---cccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCc
Q 040607          444 LSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS---TFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK  520 (629)
Q Consensus       444 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  520 (629)
                      |+.|.++..-..+|.++++|++|||++|.++..+.+   .|.++++|+.|++.+|+|..+...+|.++++|++||+.+|.
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence            999988866667888889999999999988766543   57788889999999999886666788889999999999999


Q ss_pred             CcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          521 LSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       521 l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      |...-|..|..+ .|..+.+..-.++| +|.
T Consensus       428 iaSIq~nAFe~m-~Lk~Lv~nSssflC-DCq  456 (873)
T KOG4194|consen  428 IASIQPNAFEPM-ELKELVMNSSSFLC-DCQ  456 (873)
T ss_pred             ceeecccccccc-hhhhhhhcccceEE-ecc
Confidence            888888888877 77888777778888 444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-42  Score=337.50  Aligned_cols=408  Identities=21%  Similarity=0.240  Sum_probs=276.1

Q ss_pred             CCC-CCEEEccCCcCCCccCccccCCC--CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCC
Q 040607           65 MTS-LKLLSLSNSRLNGTILDQGLCEF--VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKS  141 (629)
Q Consensus        65 l~~-L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~  141 (629)
                      |+. -+.||.+++.+. .+....+.+.  +.-+.|++++|++..+.+..|.++++|+.+++.+|.++ .||. .-+...+
T Consensus        50 c~c~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sgh  126 (873)
T KOG4194|consen   50 CPCNTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGH  126 (873)
T ss_pred             CCCCceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccc
Confidence            444 345788888776 4433233332  24567999999999988888999999999999999998 8886 3344456


Q ss_pred             CCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEcc
Q 040607          142 IQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLS  221 (629)
Q Consensus       142 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~  221 (629)
                      |+.|+|.+|.|+ .+....+..++.|+.||++.|.+......                        .+..-.++++|+|+
T Consensus       127 l~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~------------------------sfp~~~ni~~L~La  181 (873)
T KOG4194|consen  127 LEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKP------------------------SFPAKVNIKKLNLA  181 (873)
T ss_pred             eeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCC------------------------CCCCCCCceEEeec
Confidence            999999999887 55556788888888888888887654321                        13333467777777


Q ss_pred             CCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccc--ccCCCCCCccEEeccCCCCCcc
Q 040607          222 HINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVH--IPVGNMKSLSVLDLSKNRLIGK  299 (629)
Q Consensus       222 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~~L~~L~L~~n~l~~~  299 (629)
                      +|+|++.. ..-|..+.+|..|.|++|+++.++...|..+++|+.|+|..|.+...  ..|..+++|+.|.+..|.+. .
T Consensus       182 ~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-k  259 (873)
T KOG4194|consen  182 SNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-K  259 (873)
T ss_pred             cccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-c
Confidence            77776333 33345666777777777777777777777677777777776665532  22666777777777777766 5


Q ss_pred             cchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccC
Q 040607          300 IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN  379 (629)
Q Consensus       300 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  379 (629)
                      +.+..|.++.++++|+|+.|++...-..++.+++.|+.|++++|.|..+-++.++.+++|+.|+++.|.++...+..|..
T Consensus       260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~  339 (873)
T KOG4194|consen  260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV  339 (873)
T ss_pred             ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence            66666666777777777777776666666666777777777777766666666666777777777777766655666666


Q ss_pred             CCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607          380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN  459 (629)
Q Consensus       380 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  459 (629)
                      +..|++|+|+.|.+.......|..+.+|+.||++.|.+...+.+                             -...|.+
T Consensus       340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-----------------------------aa~~f~g  390 (873)
T KOG4194|consen  340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-----------------------------AAVAFNG  390 (873)
T ss_pred             HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----------------------------chhhhcc
Confidence            66666666666666544444555555555555555554332222                             2235667


Q ss_pred             ccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC-Cccccc
Q 040607          460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP-DWVAQF  532 (629)
Q Consensus       460 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~  532 (629)
                      +++|+.|+|.+|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|+.|.+..-.+.|.|. .|+.+|
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW  463 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW  463 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence            7777777777777777777777778888888888887777777777777 77777776666666555 454444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.2e-40  Score=310.41  Aligned_cols=450  Identities=24%  Similarity=0.334  Sum_probs=267.0

Q ss_pred             cceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecc
Q 040607           44 IGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS  123 (629)
Q Consensus        44 l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  123 (629)
                      ++.+.+++|.+.. +-+.+.++..|.+|++++|.++ +.|+ +++.+..++.++.++|++..+++ .+..+.+|+.++.+
T Consensus        47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhcc
Confidence            3455555555553 2333555566666666666655 5554 55555556666666665554433 45555566666666


Q ss_pred             cccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607          124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV  203 (629)
Q Consensus       124 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  203 (629)
                      +|.+. .+++ .++.+-.|+.++..+|+++ ..+ ..+.++.+|..+++.+|.+....+..  .....|++++...+...
T Consensus       123 ~n~~~-el~~-~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~l~~~~--i~m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  123 SNELK-ELPD-SIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKALPENH--IAMKRLKHLDCNSNLLE  196 (565)
T ss_pred             cccee-ecCc-hHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhhCCHHH--HHHHHHHhcccchhhhh
Confidence            66555 5554 5555555666666555554 333 24455555555555555554443322  11344555555555555


Q ss_pred             CcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-CCC
Q 040607          204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGN  282 (629)
Q Consensus       204 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~  282 (629)
                      ++|..++.+.+|+-|++..|++. .+| . |.+++.|.++.+..|.+..++..-..+++++..||+.+|++...+. +..
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl  273 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL  273 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH
Confidence            55555555555555555555554 444 2 1455555555555555555444444455555555555555554333 334


Q ss_pred             CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccccc-------------------------------------
Q 040607          283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI-------------------------------------  325 (629)
Q Consensus       283 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------------------------------------  325 (629)
                      +.+|+.||+++|.++ .+|..... + +|+.|.+.+|.+..+-                                     
T Consensus       274 LrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  274 LRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             hhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            445555555555555 44444442 3 5555555555442100                                     


Q ss_pred             -Cccc---CCCCCCcEEEccCCcCcccCchhhhccc--cCCceeccccccCCCccccccCCCCCccc-cCCCCcccCCCC
Q 040607          326 -FSKK---INLTNLWRLQLDGNHFIGEIPESLSNCN--LFGGLYLSDNHLSGKIPRWLGNLSVSEDV-IMPNNHLEGPIP  398 (629)
Q Consensus       326 -~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~  398 (629)
                       +..|   ..+.+.+.|++++-+++....+.|..-.  -...++++.|++. ..|..+..+..+.+. .+++|.+ +.+|
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~  428 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVP  428 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccch
Confidence             0011   1233466677777777644444444322  2667788888776 566655555544443 4444444 3677


Q ss_pred             ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccc
Q 040607          399 MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL  478 (629)
Q Consensus       399 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  478 (629)
                      ..++.+++|..|++++|.+ ...|..+..        +..|+.|+++.|.+. ..|........++.+-.++|++..+.+
T Consensus       429 ~~l~~l~kLt~L~L~NN~L-n~LP~e~~~--------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLL-NDLPEEMGS--------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             HHHHhhhcceeeecccchh-hhcchhhhh--------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence            7888888888888887766 445555544        667888888888887 778887777778888888888888888


Q ss_pred             ccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607          479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS  522 (629)
Q Consensus       479 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  522 (629)
                      +.+.++++|..||+.+|.+. .+|..++++++|++|+++||+|.
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            87888888888888888888 67778888888888888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.7e-39  Score=303.07  Aligned_cols=457  Identities=25%  Similarity=0.317  Sum_probs=356.6

Q ss_pred             hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCC
Q 040607           61 VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK  140 (629)
Q Consensus        61 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~  140 (629)
                      ....-..|+.|++++|.++ .+.+ .+..+..|.+|++++|+++..+| +++.+..++.++.++|.++ .+|+ .++.+.
T Consensus        40 ~wW~qv~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~  114 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLS-ELPE-QIGSLI  114 (565)
T ss_pred             hhhhhcchhhhhhccCchh-hccH-hhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHh-hccH-HHhhhh
Confidence            3444567999999999997 5554 78999999999999999998877 7889999999999999998 9998 899999


Q ss_pred             CCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEc
Q 040607          141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNL  220 (629)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L  220 (629)
                      +|+.|+.++|.+. ..+ ..++.+..|+.++..+|.+.+.++.  +..+.++..+.+..+...++|...-.++.|++++.
T Consensus       115 ~l~~l~~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~slp~~--~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~  190 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELP-DSIGRLLDLEDLDATNNQISSLPED--MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC  190 (565)
T ss_pred             hhhhhhcccccee-ecC-chHHHHhhhhhhhccccccccCchH--HHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence            9999999999987 455 3688899999999999999877653  45566788888887777777766666999999999


Q ss_pred             cCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCc
Q 040607          221 SHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIG  298 (629)
Q Consensus       221 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~  298 (629)
                      ..|.+. .+|+.+ +.+.+|+-|++..|++..++  .|.++..|++++++.|++.....  ...++++.+||+..|++. 
T Consensus       191 ~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-  265 (565)
T KOG0472|consen  191 NSNLLE-TLPPEL-GGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-  265 (565)
T ss_pred             chhhhh-cCChhh-cchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-
Confidence            998887 788887 68899999999999998876  78899999999999998875544  568889999999999998 


Q ss_pred             ccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchh--------------------------
Q 040607          299 KIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPES--------------------------  352 (629)
Q Consensus       299 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------------  352 (629)
                      ++|..+.. +.+|++||+++|.+++ .|..++++ .|+.|-+.+|.+.++--+.                          
T Consensus       266 e~Pde~cl-LrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~  342 (565)
T KOG0472|consen  266 EVPDEICL-LRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG  342 (565)
T ss_pred             cCchHHHH-hhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence            89998885 8889999999999984 56778888 8999999999874321100                          


Q ss_pred             ---------------hhccccCCceeccccccCCCccccccC--CCCCccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607          353 ---------------LSNCNLFGGLYLSDNHLSGKIPRWLGN--LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK  415 (629)
Q Consensus       353 ---------------~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  415 (629)
                                     .....+.++|++++-+++.+....|..  -.-....+++.|++. .+|..+..+..+.+.-...|
T Consensus       343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn  421 (565)
T KOG0472|consen  343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN  421 (565)
T ss_pred             cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence                           111223444555555554222222221  112445566666665 44544444444443333334


Q ss_pred             cCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCC
Q 040607          416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN  495 (629)
Q Consensus       416 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  495 (629)
                      +..+.+|..++.        +++|+.|+|++|.+. .+|..++++..|+.||++.|++. ..|.....+..++.+-.++|
T Consensus       422 n~isfv~~~l~~--------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~n  491 (565)
T KOG0472|consen  422 NKISFVPLELSQ--------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNN  491 (565)
T ss_pred             CccccchHHHHh--------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccc
Confidence            444666666655        889999999999988 78888899999999999999887 45777777777888888889


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607          496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL  546 (629)
Q Consensus       496 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~  546 (629)
                      ++....|+.+.++.+|..||+.+|.+.. +|..++.+.+++.+.++|||+.
T Consensus       492 qi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  492 QIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence            9997777779999999999999999994 5555899999999999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=313.00  Aligned_cols=480  Identities=24%  Similarity=0.279  Sum_probs=267.6

Q ss_pred             EEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEE
Q 040607           17 LTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQEL   96 (629)
Q Consensus        17 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L   96 (629)
                      +|.+.+++ ..+|..+.+-      +.+..|+++.|-+...-.+.+.+.-+|+.||+++|.+. ..|. .++.+++|+.|
T Consensus         3 vd~s~~~l-~~ip~~i~~~------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~l   73 (1081)
T KOG0618|consen    3 VDASDEQL-ELIPEQILNN------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQL   73 (1081)
T ss_pred             cccccccC-cccchhhccH------HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhc
Confidence            45555554 3444444332      23566777766654332334445555777777777776 6665 57777777777


Q ss_pred             EccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCc
Q 040607           97 HVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQ  176 (629)
Q Consensus        97 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  176 (629)
                      .++.|.|..++ .+..++.+|++++|.+|.+. ..|. .+..+++|++|+++.|.+. .+|. .+..+..+..+..++|.
T Consensus        74 n~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   74 NLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNE  148 (1081)
T ss_pred             ccchhhHhhCc-hhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcch
Confidence            77777776554 46667777777777777776 6665 6777777777777777765 4553 45566666666666661


Q ss_pred             -ceeecCCCCcCCcccccEEEec-cCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccC
Q 040607          177 -IYAQTESHSLTPKFQLNSIILS-HGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIF  254 (629)
Q Consensus       177 -~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  254 (629)
                       +....       ...++.+++. +.....++..+..++.  .+++++|.+. ...   ...+.+|+.+....|.++...
T Consensus       149 ~~~~lg-------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~  215 (1081)
T KOG0618|consen  149 KIQRLG-------QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE  215 (1081)
T ss_pred             hhhhhc-------cccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE
Confidence             11111       1124444444 2222334444444433  4777777655 111   134455555555555554432


Q ss_pred             CCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCC
Q 040607          255 QMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTN  334 (629)
Q Consensus       255 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  334 (629)
                      .    .-++++.|+.++|.+.....-.-..+|+.++++.|+++ .+|+++.. +.+|+.++..+|++. ..|..+....+
T Consensus       216 ~----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~  288 (1081)
T KOG0618|consen  216 I----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITS  288 (1081)
T ss_pred             e----cCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHhhhhh
Confidence            1    22445555555555553333333445555555555555 45544443 555555555555553 33344444455


Q ss_pred             CcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccc-------------------------cCCCCCccccCC
Q 040607          335 LWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWL-------------------------GNLSVSEDVIMP  389 (629)
Q Consensus       335 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------~~l~~L~~L~l~  389 (629)
                      |+.|++.+|.+. -+|....+++.|++|++..|.+....+..+                         ...+.|+.|++.
T Consensus       289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             HHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            555555555544 233344445555555555555442111111                         124566666777


Q ss_pred             CCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEecc
Q 040607          390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS  469 (629)
Q Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  469 (629)
                      +|.+++.....+.++..|+.|+|++|.+......++.+        ++.|++|+||+|.++ .+|..+..++.|++|...
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccccccCCHHHHhc--------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence            77776666566666677777777777765555555544        666777777777776 566666677777777777


Q ss_pred             CccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCC
Q 040607          470 HNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDG  542 (629)
Q Consensus       470 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~  542 (629)
                      +|.+...+  .+..++.|+.+|++.|+++...-..-..-++|++||++||.......+.+..++.+...+++-
T Consensus       439 sN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~  509 (1081)
T KOG0618|consen  439 SNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL  509 (1081)
T ss_pred             CCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence            77776443  466677777777777776633222111226677777777765444444444554444444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.1e-34  Score=298.99  Aligned_cols=464  Identities=22%  Similarity=0.237  Sum_probs=308.2

Q ss_pred             CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607           11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF   90 (629)
Q Consensus        11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l   90 (629)
                      ...+..|+++.|.+-.........      .-.|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. .+|. +..++
T Consensus        20 ~~~~~~ln~~~N~~l~~pl~~~~~------~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~   90 (1081)
T KOG0618|consen   20 NEALQILNLRRNSLLSRPLEFVEK------RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNM   90 (1081)
T ss_pred             HHHHHhhhccccccccCchHHhhh------eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhh
Confidence            334677777777542221111111      123778888888876 57777888888888888888887 7774 77888


Q ss_pred             CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607           91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF  170 (629)
Q Consensus        91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  170 (629)
                      .+|+++.|.+|.+... |..+..+++|+.|++++|.+. .+|. .+..++.++.+..++|.....     ++... .+.+
T Consensus        91 ~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~  161 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQR-----LGQTS-IKKL  161 (1081)
T ss_pred             hcchhheeccchhhcC-chhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhh-----hcccc-chhh
Confidence            8888888888877654 447888888888888888887 7776 777778888888877722111     11111 5555


Q ss_pred             ECCCCcceeecCCCCcCCccccc-EEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc
Q 040607          171 DSENNQIYAQTESHSLTPKFQLN-SIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY  249 (629)
Q Consensus       171 ~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  249 (629)
                      ++..|.+......    ....++ .|+++.+...  ...+..+.+|+.+....|++....     -..++++.|+.++|.
T Consensus       162 ~l~~n~l~~~~~~----~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~  230 (1081)
T KOG0618|consen  162 DLRLNVLGGSFLI----DIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNP  230 (1081)
T ss_pred             hhhhhhcccchhc----chhhhheeeecccchhh--hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCc
Confidence            5555544322211    111222 2555544333  223445555666666666554211     123556666666666


Q ss_pred             ccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcc
Q 040607          250 LSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSK  328 (629)
Q Consensus       250 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  328 (629)
                      ++.....  .-..+++++++++|++..... +..+.+|+.++..+|+++ .+|..++. ..+|++|++..|.+. .+|..
T Consensus       231 l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~  305 (1081)
T KOG0618|consen  231 LTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPF  305 (1081)
T ss_pred             ceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCc
Confidence            6532221  123456666666666654444 555666666666666665 56666554 556666666666665 33344


Q ss_pred             cCCCCCCcEEEccCCcCcccCch-----------------------hh--hccccCCceeccccccCCCccccccCCCCC
Q 040607          329 KINLTNLWRLQLDGNHFIGEIPE-----------------------SL--SNCNLFGGLYLSDNHLSGKIPRWLGNLSVS  383 (629)
Q Consensus       329 ~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  383 (629)
                      ..++..|++|++..|++....+.                       ..  ...+.|+.|.+.+|.+++..-..+.+...|
T Consensus       306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL  385 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL  385 (1081)
T ss_pred             ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence            44566666666666655421110                       11  123457888999999988777778889999


Q ss_pred             ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccccc
Q 040607          384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI  463 (629)
Q Consensus       384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  463 (629)
                      +.|+|++|.+.......+.+++.|++|+++||.+.. +|.+...        ++.|+.|...+|.+. ..| .+..++.|
T Consensus       386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~--------~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVAN--------LGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             eeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHh--------hhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            999999999997777789999999999999999955 4577766        899999999999998 777 78899999


Q ss_pred             ceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607          464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       464 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  519 (629)
                      +.+|+|.|+++......-..-++|++||+++|.-.......|..+.++...++.-|
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999999998764333333389999999999855466677777888888888766

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.8e-33  Score=274.63  Aligned_cols=344  Identities=25%  Similarity=0.289  Sum_probs=288.0

Q ss_pred             CCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc-CCCCcccCCCcc
Q 040607          187 TPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI-FQMPKHARRHLT  265 (629)
Q Consensus       187 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~  265 (629)
                      ...++++.|.+.......+|+.++.+.+|++|.+++|++. .+...+ +.++.|+.+.+.+|.+... .|..+-.+..|+
T Consensus        29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt  106 (1255)
T KOG0444|consen   29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT  106 (1255)
T ss_pred             HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhccccccCCCCchhcccccce
Confidence            3444555555555555678999999999999999999987 444443 6889999999999987643 334455789999


Q ss_pred             EEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCc
Q 040607          266 YLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH  344 (629)
Q Consensus       266 ~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  344 (629)
                      .|||++|++...+. +...+++-+|+|++|+|. .||..+|..+..|-+|||++|++.. .|.....+.+|++|++++|.
T Consensus       107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             eeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCCh
Confidence            99999999986554 777788999999999998 9999999999999999999999984 55567889999999999998


Q ss_pred             CcccCchhhhccccCCceeccccccC-CCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC
Q 040607          345 FIGEIPESLSNCNLFGGLYLSDNHLS-GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS  423 (629)
Q Consensus       345 l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  423 (629)
                      +....-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|+.+.++++|+.|++++|.++...- 
T Consensus       185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-  262 (1255)
T KOG0444|consen  185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-  262 (1255)
T ss_pred             hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-
Confidence            76444455666778899999886543 468889999999999999999998 789999999999999999999865332 


Q ss_pred             CcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccc-ccccccCCCCCCEEECcCCcCCCCCC
Q 040607          424 CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL-ILSTFSNLKQTESLDLSYNKLTGKIP  502 (629)
Q Consensus       424 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~  502 (629)
                      +...        -.+|+.|++|.|+++ ..|.++..++.|+.|++.+|+++-. +|..++.+..|+.+..++|.+. ..|
T Consensus       263 ~~~~--------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP  332 (1255)
T KOG0444|consen  263 TEGE--------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP  332 (1255)
T ss_pred             cHHH--------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence            2222        468999999999999 8899999999999999999987632 5788999999999999999998 899


Q ss_pred             ccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          503 PQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       503 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      +.+..++.|+.|.+++|++. ..|..+-.++.++.+++..||-+-
T Consensus       333 EglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence            99999999999999999998 567667888999999999999764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-32  Score=271.08  Aligned_cols=368  Identities=24%  Similarity=0.298  Sum_probs=229.1

Q ss_pred             cCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCC
Q 040607           63 KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSI  142 (629)
Q Consensus        63 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L  142 (629)
                      +-++-.|-.|+++|.++|.--+.....+.+++.|.|...++..+ |+.++.+.+|++|.+++|++. ++-. .++.++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhh
Confidence            34566777889999888543333778888889999888888665 457888888999999988887 5543 68888888


Q ss_pred             CEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccC
Q 040607          143 QELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSH  222 (629)
Q Consensus       143 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~  222 (629)
                      +.+.+.+|.+..+.-+..+..+..|..||+++|++.                         +.|..+...+++-.|+|++
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLNLS~  135 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLNLSY  135 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEEccc
Confidence            888888888764333345667888888888887763                         3566777778888888888


Q ss_pred             CCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccc--cCCCCCCccEEeccCCCCC-cc
Q 040607          223 INLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHI--PVGNMKSLSVLDLSKNRLI-GK  299 (629)
Q Consensus       223 n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~--~~~~~~~L~~L~L~~n~l~-~~  299 (629)
                      |+|. .+|..++-+++.|-.|++++|++...+| ....+..|++|+|++|.+....  .+..+++|++|.+++.+-+ ..
T Consensus       136 N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N  213 (1255)
T KOG0444|consen  136 NNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN  213 (1255)
T ss_pred             Cccc-cCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc
Confidence            8887 7888877888888888888888776655 3445667777777777665322  1445566666666665432 23


Q ss_pred             cchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccC
Q 040607          300 IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN  379 (629)
Q Consensus       300 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  379 (629)
                      +|..+.. +.+|..+|++.|.+. ..|..+..+++|+.|++++|+++.. ......-.+|++|++|+|+++ .+|.++..
T Consensus       214 ~Ptsld~-l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcK  289 (1255)
T KOG0444|consen  214 IPTSLDD-LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCK  289 (1255)
T ss_pred             CCCchhh-hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhh
Confidence            4444443 555566666665555 4455555555555555555555422 222222334555555555554 44555555


Q ss_pred             CCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607          380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN  459 (629)
Q Consensus       380 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  459 (629)
                      ++.|+.|+..+|.++                       ...+|..++.        +.+|+.+..++|.+. .+|+.+..
T Consensus       290 L~kL~kLy~n~NkL~-----------------------FeGiPSGIGK--------L~~Levf~aanN~LE-lVPEglcR  337 (1255)
T KOG0444|consen  290 LTKLTKLYANNNKLT-----------------------FEGIPSGIGK--------LIQLEVFHAANNKLE-LVPEGLCR  337 (1255)
T ss_pred             hHHHHHHHhccCccc-----------------------ccCCccchhh--------hhhhHHHHhhccccc-cCchhhhh
Confidence            555555555555442                       1233444433        444444555555544 45555555


Q ss_pred             ccccceEeccCccccccccccccCCCCCCEEECcCCcC
Q 040607          460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL  497 (629)
Q Consensus       460 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  497 (629)
                      |..|+.|.|++|++-. .|+++.-++.|+.||+..|.-
T Consensus       338 C~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  338 CVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hHHHHHhcccccceee-chhhhhhcCCcceeeccCCcC
Confidence            5555555555555442 344455555555555555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.95  E-value=6e-30  Score=240.24  Aligned_cols=291  Identities=19%  Similarity=0.146  Sum_probs=183.1

Q ss_pred             chhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccC-CcCccCCCcccCCCCCC
Q 040607           39 MVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDH-NNLYGVPPWCLGNMTSL  117 (629)
Q Consensus        39 ~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L  117 (629)
                      .+|+...+++|+.|+|+..-+.+|+.+++||.||||+|.|+ .|.+++|.++++|..|-+.+ |+|++++.+.|.++..|
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            45677789999999999888899999999999999999998 88777999999988887766 89999999999999999


Q ss_pred             CeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEe
Q 040607          118 QVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIIL  197 (629)
Q Consensus       118 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  197 (629)
                      +.|.+.-|.+. .++.++|..+++|..|.+.+|.+. .+....|..+..++.+.+..|++.......+.....       
T Consensus       143 qrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~-------  213 (498)
T KOG4237|consen  143 QRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL-------  213 (498)
T ss_pred             HHHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHH-------
Confidence            99999999998 888889999999999999999887 677778999999999999988865443322111100       


Q ss_pred             ccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcE-EeccCccccccCCCCcccCCCccEEEccCCCCcc
Q 040607          198 SHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQT-LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQV  276 (629)
Q Consensus       198 ~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~  276 (629)
                           ...|..++...-..-..+.+.++...-+..+......+.+ +....+....-+...|..+++|++|++++|+++.
T Consensus       214 -----a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  214 -----AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             -----hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence                 0011222222222223333333332222222111011100 0111111111122234444555555555555443


Q ss_pred             ccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcC
Q 040607          277 HIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF  345 (629)
Q Consensus       277 ~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  345 (629)
                      ..+  |.....+++|.|..|++. .+...+|.++.+|+.|+|.+|+|+...|.+|..+..|.+|++-.|.+
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            333  445555555555555554 55555555555555556666655555555555555555555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=2.9e-27  Score=222.29  Aligned_cols=424  Identities=18%  Similarity=0.206  Sum_probs=264.8

Q ss_pred             eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccc-
Q 040607           46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS-  124 (629)
Q Consensus        46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-  124 (629)
                      ..+-++-.++ .+|+.+.  +.-..++|..|.|+ .||+++|+.+++|+.|||++|.|+.|.|++|.++++|.+|-+.+ 
T Consensus        50 ~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             eEEccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence            3444444454 3454433  24677999999999 99999999999999999999999999999999999998887776 


Q ss_pred             ccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCC
Q 040607          125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT  204 (629)
Q Consensus       125 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  204 (629)
                      |+|+ .+|.++|+++..|+.|.+.-|++. -+..+.|..+++|..|.+.+|.+.....                      
T Consensus       126 NkI~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~----------------------  181 (498)
T KOG4237|consen  126 NKIT-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICK----------------------  181 (498)
T ss_pred             Cchh-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcc----------------------
Confidence            8999 999999999999999999999887 5666789999999999999998865443                      


Q ss_pred             cChhhcCCCCCCEEEccCCCCC-C-----------CCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEE--Ec-
Q 040607          205 FPKFLYHQHDLKHVNLSHINLR-G-----------EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYL--DV-  269 (629)
Q Consensus       205 ~~~~l~~~~~L~~L~L~~n~l~-~-----------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L--~L-  269 (629)
                        ..+..+..++++.+..|.+- +           ..|.. +++........+.+.++..+.+..|...  ++.+  .+ 
T Consensus       182 --~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~  256 (498)
T KOG4237|consen  182 --GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLS  256 (498)
T ss_pred             --ccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhc
Confidence              13566677888888877622 1           11111 1233333444444555554444444222  2222  11 


Q ss_pred             cCCCCccccc---CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCc
Q 040607          270 SDNFFQVHIP---VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI  346 (629)
Q Consensus       270 ~~n~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  346 (629)
                      +.+.....-|   |..+++|++|++++|+++ .+.+..|.+..++++|.|..|++......+|.++..|+.|++.+|+|+
T Consensus       257 ~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  257 SEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             cccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            1222222333   777888888888888887 677777777888888888888887777777888888888888888888


Q ss_pred             ccCchhhhccccCCceeccccccCCCc-cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCC---CC
Q 040607          347 GEIPESLSNCNLFGGLYLSDNHLSGKI-PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS---LP  422 (629)
Q Consensus       347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~  422 (629)
                      ...|.+|.....|.+|++-.|.+...- -.|++.       .+......+..+  .+.-..++.+++++..+...   .|
T Consensus       336 ~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~  406 (498)
T KOG4237|consen  336 TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGP  406 (498)
T ss_pred             EEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCCCCC--CCCCchhccccchhccccccccCCc
Confidence            888888888888888888777664211 111111       011111111111  11112344444544433111   11


Q ss_pred             CCcCCCcc-ccCCCccCCC-eeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCC
Q 040607          423 SCFNPFSI-KQGKPLNSMS-GLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK  500 (629)
Q Consensus       423 ~~~~~~~~-~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  500 (629)
                      +...-... .-...++-+. ....|+..++ .+|..+  .....+|++.+|.++.++.+   .+.+| .+|+++|+++..
T Consensus       407 ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~L  479 (498)
T KOG4237|consen  407 EELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSL  479 (498)
T ss_pred             cccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehh
Confidence            11000000 0000122222 2344444444 333322  13456677777777655433   34556 677777777755


Q ss_pred             CCccccCCCCCCEEEcccC
Q 040607          501 IPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       501 ~~~~~~~l~~L~~L~l~~N  519 (629)
                      ....|.++++|..|-+++|
T Consensus       480 sn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  480 SNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcccccchhhhheeEEecC
Confidence            5566777777777776665

>PLN03210 Resistant to P

Probab=99.90  E-value=3.6e-22  Score=230.75  Aligned_cols=347  Identities=19%  Similarity=0.207  Sum_probs=176.9

Q ss_pred             CccccCCCCCCcEEEccCCcC------ccCCCcccCCCC-CCCeeecccccCCcccCccccCCCCCCCEEEccCcccccc
Q 040607           83 LDQGLCEFVHLQELHVDHNNL------YGVPPWCLGNMT-SLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIP  155 (629)
Q Consensus        83 ~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~-~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~  155 (629)
                      ...+|.++++|++|.+.++..      ....|..|..++ +|+.|.+.++.+. .+|. .+ ...+|++|++.++.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccc-c
Confidence            334566666666666654321      111233344432 4666666666555 5554 33 3455666666655554 2


Q ss_pred             cCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHh
Q 040607          156 ISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE  235 (629)
Q Consensus       156 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~  235 (629)
                      ++ ..+..+++|+.|+++++..                        ...+|. +..+++|++|++++|.....+|..+ .
T Consensus       626 L~-~~~~~l~~Lk~L~Ls~~~~------------------------l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~  678 (1153)
T PLN03210        626 LW-DGVHSLTGLRNIDLRGSKN------------------------LKEIPD-LSMATNLETLKLSDCSSLVELPSSI-Q  678 (1153)
T ss_pred             cc-cccccCCCCCEEECCCCCC------------------------cCcCCc-cccCCcccEEEecCCCCccccchhh-h
Confidence            22 2234455555555554321                        223343 5566778888888776555677665 5


Q ss_pred             cCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEE
Q 040607          236 NNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLV  315 (629)
Q Consensus       236 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  315 (629)
                      .+++|+.|++++|......+... .+++|+.|++++|......| ....+|+.|++++|.+. .+|..+  .+++|++|+
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~  753 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAIE-EFPSNL--RLENLDELI  753 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc-cccCCcCeeecCCCccc-cccccc--ccccccccc
Confidence            67777777777654322222222 45666666666654332222 12345556666666554 445433  245555555


Q ss_pred             ccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccC
Q 040607          316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG  395 (629)
Q Consensus       316 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  395 (629)
                      +.++..... ..                .+....+..+...++|+.|++++|.....+|..++.+++|+.|++++|...+
T Consensus       754 l~~~~~~~l-~~----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        754 LCEMKSEKL-WE----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE  816 (1153)
T ss_pred             ccccchhhc-cc----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence            544321100 00                0000111112223455555555555544555555555666666665554333


Q ss_pred             CCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCc-ccc
Q 040607          396 PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHN-KLT  474 (629)
Q Consensus       396 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~  474 (629)
                      .+|... .+++|+.|++++|......|..           ..+|+.|+|++|.++ .+|..+..+++|+.|++++| ++.
T Consensus       817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        817 TLPTGI-NLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             eeCCCC-CccccCEEECCCCCcccccccc-----------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence            444433 4566666666666543333321           345666666666666 55666666666666666664 343


Q ss_pred             ccccccccCCCCCCEEECcCCc
Q 040607          475 GLILSTFSNLKQTESLDLSYNK  496 (629)
Q Consensus       475 ~~~~~~~~~l~~L~~L~L~~N~  496 (629)
                      . .+..+..+++|+.+++++|.
T Consensus       884 ~-l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        884 R-VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c-cCcccccccCCCeeecCCCc
Confidence            3 34445556666666666663

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.2e-21  Score=226.30  Aligned_cols=324  Identities=18%  Similarity=0.170  Sum_probs=170.3

Q ss_pred             cchhhhcCCCCCCEEEccCCcC------CCccCccccCCCC-CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCc
Q 040607           57 NFLQVIKSMTSLKLLSLSNSRL------NGTILDQGLCEFV-HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG  129 (629)
Q Consensus        57 ~~~~~l~~l~~L~~L~Ls~n~l------~~~i~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  129 (629)
                      ..+.+|.++++|+.|.+..+..      ...+|. .|..++ +|+.|.+.++.+..++. .| ...+|+.|++++|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~-~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPS-NF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCC-cC-CccCCcEEECcCcccc-
Confidence            3456788999999999976532      223554 566654 69999999998877765 44 5789999999999988 


Q ss_pred             ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEec-cCCCCCcChh
Q 040607          130 NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILS-HGSGVTFPKF  208 (629)
Q Consensus       130 ~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~  208 (629)
                      .++. .+..+++|++|+++++.....++  .+..+++|+.|++++|......+ ..+..+.+|+.|+++ +.....+|..
T Consensus       625 ~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        625 KLWD-GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccc-ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCc
Confidence            7776 78889999999999875433444  47778889999998875422211 122334455555555 2333344443


Q ss_pred             hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccE
Q 040607          209 LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSV  288 (629)
Q Consensus       209 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~  288 (629)
                      + .+++|+.|++++|.....+|.    ..++|+.|++++|.+..++.. + .+++|++|++.++.......         
T Consensus       701 i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~-~-~l~~L~~L~l~~~~~~~l~~---------  764 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSN-L-RLENLDELILCEMKSEKLWE---------  764 (1153)
T ss_pred             C-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccccc-c-cccccccccccccchhhccc---------
Confidence            3 345555555555533323332    123455555555544433221 1 23444444444322110000         


Q ss_pred             EeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccc
Q 040607          289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNH  368 (629)
Q Consensus       289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  368 (629)
                            .+. .++...+..+++|++|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|.
T Consensus       765 ------~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        765 ------RVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             ------ccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence                  000 0111111123345555555544444444444455555555555443332333332 34445555555443


Q ss_pred             cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607          369 LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN  416 (629)
Q Consensus       369 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  416 (629)
                      ....+|..   .++++.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus       837 ~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        837 RLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             cccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence            33222221   134444555555444 334444445555555555433

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.4e-21  Score=205.56  Aligned_cols=265  Identities=24%  Similarity=0.269  Sum_probs=197.7

Q ss_pred             CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEecc
Q 040607          213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS  292 (629)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~  292 (629)
                      .+-..|+++++.++ .+|..+.   ++++.|++.+|.++.++.    .+++|++|++++|+++....  ..++|+.|+++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC--cccccceeecc
Confidence            34667888888887 6777653   478888888888887653    35788999999988886543  35688899999


Q ss_pred             CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCC
Q 040607          293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK  372 (629)
Q Consensus       293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  372 (629)
                      +|.+. .+|..    +.+|+.|++++|+++.. |.   ..++|+.|++++|.+++. |..   ..+|+.|++++|.+.. 
T Consensus       271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        271 SNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             CCchh-hhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-
Confidence            98887 56652    45788899999988854 33   246789999999988753 432   2357788888888874 


Q ss_pred             ccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC
Q 040607          373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE  452 (629)
Q Consensus       373 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  452 (629)
                      +|..   ..+|+.|++++|.+++ +|..   .++|+.|++++|.+.. +|..           ..+|+.|++++|.++ .
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l-----------~~~L~~LdLs~N~Lt-~  396 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL-----------PSGLKELIVSGNRLT-S  396 (788)
T ss_pred             cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----------ccccceEEecCCccc-C
Confidence            4432   2478899999999885 4432   3578888999988865 4432           457889999999998 4


Q ss_pred             CccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcc
Q 040607          453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV  529 (629)
Q Consensus       453 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  529 (629)
                      +|..   .++|+.|++++|.++++ |..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus       397 LP~l---~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        397 LPVL---PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCc---ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            5543   36799999999999875 332   346888999999998 678888899999999999999998777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.6e-20  Score=199.69  Aligned_cols=261  Identities=21%  Similarity=0.246  Sum_probs=141.0

Q ss_pred             eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccc
Q 040607           46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN  125 (629)
Q Consensus        46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  125 (629)
                      .|+++.+.++ .+|..+.  ++|+.|++++|.++ .+|.    ..++|++|++++|+++.+++    ..++|+.|++++|
T Consensus       205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N  272 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN  272 (788)
T ss_pred             EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeeccCC
Confidence            5666666666 3555554  35666777766666 5553    23566677777666665543    1356666666666


Q ss_pred             cCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCc
Q 040607          126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF  205 (629)
Q Consensus       126 ~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  205 (629)
                      .++ .+|. .   .++|+.|++++|.++ .++.    ..++|+.|++++|.+...                         
T Consensus       273 ~L~-~Lp~-l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-------------------------  317 (788)
T PRK15387        273 PLT-HLPA-L---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-------------------------  317 (788)
T ss_pred             chh-hhhh-c---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-------------------------
Confidence            665 5543 1   245666666666665 2331    235566666666665433                         


Q ss_pred             ChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCC
Q 040607          206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKS  285 (629)
Q Consensus       206 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~  285 (629)
                      |..   ...|+.|++++|+++ .+|..    ..+|+.|++++|.++.++..    ..+|+.|++++|.+......  ..+
T Consensus       318 p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l--~~~  383 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL--PSG  383 (788)
T ss_pred             CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc--ccc
Confidence            221   112444555555554 23321    13455555555555543321    23455555555555532221  235


Q ss_pred             ccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecc
Q 040607          286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS  365 (629)
Q Consensus       286 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  365 (629)
                      |+.|++++|.+. .+|..    .++|+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus       384 L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        384 LKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            666666666665 44432    2456666666666654 2322   234566666666665 456666666666666666


Q ss_pred             ccccCCCccccc
Q 040607          366 DNHLSGKIPRWL  377 (629)
Q Consensus       366 ~n~l~~~~~~~~  377 (629)
                      +|++++..+..+
T Consensus       454 ~N~Ls~~~~~~L  465 (788)
T PRK15387        454 GNPLSERTLQAL  465 (788)
T ss_pred             CCCCCchHHHHH
Confidence            666665554444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.4e-18  Score=187.73  Aligned_cols=246  Identities=25%  Similarity=0.325  Sum_probs=122.9

Q ss_pred             CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccC
Q 040607          214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK  293 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~  293 (629)
                      +...|++++++++ .+|..+.   +.++.|++++|.++.++...+   .+|+.|++++|.+... |..-..+|+.|++++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSI-PATLPDTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccC-ChhhhccccEEECcC
Confidence            4566777777666 4555432   456677777776665543222   3566666666665532 212223566666666


Q ss_pred             CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607          294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI  373 (629)
Q Consensus       294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  373 (629)
                      |.+. .+|..+.   .+|++|++++|+++. +|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+    
T Consensus       251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~L----  316 (754)
T PRK15370        251 NRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL----  316 (754)
T ss_pred             CccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcc----
Confidence            6655 5555442   356666666666553 333322  355555665555542 222221  2344444554444    


Q ss_pred             cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCC
Q 040607          374 PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEI  453 (629)
Q Consensus       374 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  453 (629)
                                          +. +|..+  .++|+.|++++|.+.+ +|..+          +++|+.|++++|+++ .+
T Consensus       317 --------------------t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l----------~~sL~~L~Ls~N~L~-~L  361 (754)
T PRK15370        317 --------------------TA-LPETL--PPGLKTLEAGENALTS-LPASL----------PPELQVLDVSKNQIT-VL  361 (754)
T ss_pred             --------------------cc-CCccc--cccceeccccCCcccc-CChhh----------cCcccEEECCCCCCC-cC
Confidence                                42 22211  1345555555555433 23222          345555555555555 34


Q ss_pred             ccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCcccc----CCCCCCEEEcccCcCc
Q 040607          454 PLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLV----ELNALAVFSVAHNKLS  522 (629)
Q Consensus       454 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~l~~N~l~  522 (629)
                      |..+  .++|+.|+|++|.++.+++ .+.  .+|+.|++++|+++ .+|..+.    ..+++..+++.+|+++
T Consensus       362 P~~l--p~~L~~LdLs~N~Lt~LP~-~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        362 PETL--PPTITTLDVSRNALTNLPE-NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             Chhh--cCCcCEEECCCCcCCCCCH-hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4333  2455666666665554332 222  24555666666655 3343322    2355566666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=5.9e-18  Score=182.98  Aligned_cols=246  Identities=21%  Similarity=0.281  Sum_probs=169.3

Q ss_pred             cccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEcc
Q 040607          191 QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVS  270 (629)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~  270 (629)
                      +...|++.+.....+|..+.  +.++.|++++|+++ .+|..++   ++|+.|++++|.++.++.. +  ..+|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPAT-L--PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChh-h--hccccEEECc
Confidence            56788888777777887653  47999999999998 6787653   5899999999999876542 2  3579999999


Q ss_pred             CCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCc
Q 040607          271 DNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP  350 (629)
Q Consensus       271 ~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  350 (629)
                      +|.+... |-.-..+|+.|++++|.+. .+|..+.   ++|++|++++|+++.. |..+.  ++|+.|++++|.++. +|
T Consensus       250 ~N~L~~L-P~~l~s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        250 INRITEL-PERLPSALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CCccCcC-ChhHhCCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CC
Confidence            9998844 3223458999999999998 7887653   5899999999999854 44332  579999999999884 44


Q ss_pred             hhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCcc
Q 040607          351 ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI  430 (629)
Q Consensus       351 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  430 (629)
                      ..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|.+. .+|..+  .++|+.|++++|++... |..+     
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l-----  386 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL-PENL-----  386 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC-CHhH-----
Confidence            433  2578888888888774 454332  56667777776665 334333  24666666666666532 3222     


Q ss_pred             ccCCCccCCCeeecccccCCCCCcccc----ccccccceEeccCcccc
Q 040607          431 KQGKPLNSMSGLDLSCNKLTGEIPLRI----GNLTRIHTLNVSHNKLT  474 (629)
Q Consensus       431 ~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~l~  474 (629)
                           ...|+.|++++|+++ .+|..+    ..++.+..|++.+|+++
T Consensus       387 -----~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 -----PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -----HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                 234666666666665 333322    22355566666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.8e-19  Score=181.49  Aligned_cols=230  Identities=21%  Similarity=0.228  Sum_probs=136.0

Q ss_pred             CCCCcEEEccCccccc------ccCcccCCCCCCcEEEccCCcCcccCchhhhcccc---CCceeccccccCC----Ccc
Q 040607          308 CFSLRYLVLSNNKMKG------HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNL---FGGLYLSDNHLSG----KIP  374 (629)
Q Consensus       308 ~~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~  374 (629)
                      .+.+++++++++.+..      ..+..+..+++|+.|++++|.+....+..+..+..   |++|++++|.+.+    .+.
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence            3445555555554431      11233444556666666666555444444444443   6666666665542    112


Q ss_pred             ccccCC-CCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCC----CCCcCCCccccCCCccCCCeeecc
Q 040607          375 RWLGNL-SVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSL----PSCFNPFSIKQGKPLNSMSGLDLS  445 (629)
Q Consensus       375 ~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~~~~~~L~~L~L~  445 (629)
                      ..+..+ +.|+.+++++|.+++.    .+..+..+++|++|++++|.+.+..    +..+..        .++|+.|+++
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--------~~~L~~L~L~  201 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--------NCNLEVLDLN  201 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh--------CCCCCEEecc
Confidence            233444 6666667766666532    2334556667888888877765321    111111        4578888888


Q ss_pred             cccCCCC----CccccccccccceEeccCcccccccccccc-----CCCCCCEEECcCCcCCC----CCCccccCCCCCC
Q 040607          446 CNKLTGE----IPLRIGNLTRIHTLNVSHNKLTGLILSTFS-----NLKQTESLDLSYNKLTG----KIPPQLVELNALA  512 (629)
Q Consensus       446 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~  512 (629)
                      +|.+++.    +...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+.+.+..+++|+
T Consensus       202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~  281 (319)
T cd00116         202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL  281 (319)
T ss_pred             CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence            8877633    233456678899999999888764332222     23789999999998862    2234455567899


Q ss_pred             EEEcccCcCccc----CCCccccc-cccCCCCCCCCCC
Q 040607          513 VFSVAHNKLSGK----TPDWVAQF-ATFNGSSYDGNPF  545 (629)
Q Consensus       513 ~L~l~~N~l~~~----~~~~~~~~-~~l~~l~~~~np~  545 (629)
                      .+++++|++...    ....+..+ ..++.+++.+|||
T Consensus       282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            999999998854    22333334 6778888888886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1e-18  Score=175.93  Aligned_cols=280  Identities=23%  Similarity=0.168  Sum_probs=145.8

Q ss_pred             EEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc----CCCCcccCCCccEEEccCCCCcccc--------cCCCCC
Q 040607          217 HVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI----FQMPKHARRHLTYLDVSDNFFQVHI--------PVGNMK  284 (629)
Q Consensus       217 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~--------~~~~~~  284 (629)
                      .|+|..+.+.+..-..++..+..++.++++++.++..    ....+...+.+++++++++.+....        .+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4667777776444444456667788888888776432    1222334455667777666554200        034455


Q ss_pred             CccEEeccCCCCCcccchhhhhCCC---CCcEEEccCccccc----ccCcccCCC-CCCcEEEccCCcCcccCchhhhcc
Q 040607          285 SLSVLDLSKNRLIGKIPERLAMGCF---SLRYLVLSNNKMKG----HIFSKKINL-TNLWRLQLDGNHFIGEIPESLSNC  356 (629)
Q Consensus       285 ~L~~L~L~~n~l~~~~~~~~~~~~~---~L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l  356 (629)
                      +|+.|++++|.+.+..+..+.. +.   +|++|++++|++.+    .....+..+ ++|+.|++++|.+++....     
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-----  155 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE-----  155 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHH-HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH-----
Confidence            6666666666554322222221 22   25555555555442    111122233 4555555555554421110     


Q ss_pred             ccCCceeccccccCCCccccccCCCCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCCCCCcCCCcccc
Q 040607          357 NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ  432 (629)
Q Consensus       357 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  432 (629)
                                     .++..+..++.|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+.....+..    .
T Consensus       156 ---------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~----~  216 (319)
T cd00116         156 ---------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE----T  216 (319)
T ss_pred             ---------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH----H
Confidence                           1122233344455555555544421    1222334456666666666554222111100    0


Q ss_pred             CCCccCCCeeecccccCCCCCccccc-----cccccceEeccCcccccc----ccccccCCCCCCEEECcCCcCCCC---
Q 040607          433 GKPLNSMSGLDLSCNKLTGEIPLRIG-----NLTRIHTLNVSHNKLTGL----ILSTFSNLKQTESLDLSYNKLTGK---  500 (629)
Q Consensus       433 ~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~---  500 (629)
                      ...+++|+.|++++|.+++.....+.     ..+.|+.|++++|.+++.    ....+..+++|+++++++|.++..   
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            11256677777777776642222221     236888888888888632    234456668889999999988844   


Q ss_pred             -CCccccCC-CCCCEEEcccCcC
Q 040607          501 -IPPQLVEL-NALAVFSVAHNKL  521 (629)
Q Consensus       501 -~~~~~~~l-~~L~~L~l~~N~l  521 (629)
                       ....+... +.|+.+++.+|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         297 LLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhhcCCchhhcccCCCCC
Confidence             33344444 6888888888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.5e-18  Score=143.80  Aligned_cols=174  Identities=24%  Similarity=0.416  Sum_probs=100.6

Q ss_pred             CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607          360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM  439 (629)
Q Consensus       360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  439 (629)
                      +.|.+++|+++ ..|..+..+.+|+.|++++|+++ .+|..++.++.|+.|+++-|.+ ...|..|+.        ++.|
T Consensus        36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs--------~p~l  104 (264)
T KOG0617|consen   36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGS--------FPAL  104 (264)
T ss_pred             hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCC--------Cchh
Confidence            33444444444 23333444444444444444444 3344444455555555554444 334444444        4555


Q ss_pred             CeeecccccCCC-CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607          440 SGLDLSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH  518 (629)
Q Consensus       440 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  518 (629)
                      +.|||++|++.. ..|..|..+..|+.|+|++|.+. +.|...+++++|+.|.+..|.+. ..|..++.++.|+.|++.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            555555555532 45666667777777777777775 34555677777777777777776 6677777777777888888


Q ss_pred             CcCcccCCCccccc---cccCCCCCCCCCCCC
Q 040607          519 NKLSGKTPDWVAQF---ATFNGSSYDGNPFLS  547 (629)
Q Consensus       519 N~l~~~~~~~~~~~---~~l~~l~~~~np~~c  547 (629)
                      |+++...|. ++.+   .+-+......|||.-
T Consensus       183 nrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  183 NRLTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             ceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            877755554 3443   222345678899864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=4.1e-18  Score=142.55  Aligned_cols=183  Identities=25%  Similarity=0.431  Sum_probs=134.5

Q ss_pred             CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEE
Q 040607          331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQIL  410 (629)
Q Consensus       331 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  410 (629)
                      .+.++..|-+++|+++ .+|..+..+.+|+.|++++|++. ..|..+++++.|+.|+++-|.+. ..|..|+.+|.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3445556666666666 44555666666777777766666 56666667777777777766666 677777888888888


Q ss_pred             EcccCcCCC-CCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCE
Q 040607          411 DISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTES  489 (629)
Q Consensus       411 ~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  489 (629)
                      |+++|++.. ..|..|..        +..|+.|+|++|.+. .+|..++.+++|+.|.+..|.+-. .|..++.++.|++
T Consensus       108 dltynnl~e~~lpgnff~--------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lre  177 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY--------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRE  177 (264)
T ss_pred             hccccccccccCCcchhH--------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHH
Confidence            888877743 44555544        788889999999998 888899999999999999999875 4677899999999


Q ss_pred             EECcCCcCCCCCCccccCCC---CCCEEEcccCcCcccCCC
Q 040607          490 LDLSYNKLTGKIPPQLVELN---ALAVFSVAHNKLSGKTPD  527 (629)
Q Consensus       490 L~L~~N~l~~~~~~~~~~l~---~L~~L~l~~N~l~~~~~~  527 (629)
                      |++.+|+++ .+|..+..+.   +=+.+.+.+|++...+.+
T Consensus       178 lhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  178 LHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             Hhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            999999999 6666666543   335566778888765553

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=4.7e-14  Score=152.45  Aligned_cols=111  Identities=31%  Similarity=0.486  Sum_probs=102.0

Q ss_pred             CCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607          438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA  517 (629)
Q Consensus       438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  517 (629)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCcccCCCccccc-cccCCCCCCCCCCCCC
Q 040607          518 HNKLSGKTPDWVAQF-ATFNGSSYDGNPFLSS  548 (629)
Q Consensus       518 ~N~l~~~~~~~~~~~-~~l~~l~~~~np~~c~  548 (629)
                      +|++++.+|..+... .++..+++.+|+..|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccC
Confidence            999999999876653 4567788999999994

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=1.9e-12  Score=114.34  Aligned_cols=125  Identities=22%  Similarity=0.359  Sum_probs=45.0

Q ss_pred             ccceeeccCcccCccchhhhc-CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607           43 FIGFRAMDGTALDKNFLQVIK-SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN  121 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  121 (629)
                      .+++|+|++|.|+.+  +.++ .+.+|+.|++++|.++ .+.  .+..+++|++|++++|+|+.+.+.....+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            456777777777743  3354 4677888888888887 665  477778888888888888776542223577888888


Q ss_pred             cccccCCcccC-ccccCCCCCCCEEEccCcccccccC--CcccCCCCCCcEEECC
Q 040607          122 ISSNQLTGNIS-SPPLKHLKSIQELKLSNNYFQIPIS--LGPLYNHSNLKIFDSE  173 (629)
Q Consensus       122 L~~n~l~~~i~-~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~l~  173 (629)
                      +++|+|. .+. -..+..+++|++|++.+|+++....  ...+..+|+|+.||-.
T Consensus        95 L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8888776 332 2346667788888888887763211  1234567777777754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=1e-12  Score=130.55  Aligned_cols=170  Identities=29%  Similarity=0.454  Sum_probs=104.2

Q ss_pred             cEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607          336 WRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK  415 (629)
Q Consensus       336 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  415 (629)
                      ...|++.|++. ++|..+..+..|+.+.++.|.+. .+|..+..+..|+.++++.|++. ..|..++.++ |+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            44566666655 45556666666666666666655 55556666666666666666666 4555555555 666666666


Q ss_pred             cCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCC
Q 040607          416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN  495 (629)
Q Consensus       416 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  495 (629)
                      +++ ..|..++.        .+.|..||.+.|.+. ..|..+.++.+|+.|++..|++.+.+++ +..+ .|..||+|.|
T Consensus       154 kl~-~lp~~ig~--------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi~lDfScN  221 (722)
T KOG0532|consen  154 KLT-SLPEEIGL--------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLIRLDFSCN  221 (722)
T ss_pred             ccc-cCCccccc--------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-ceeeeecccC
Confidence            663 33333333        566666666666666 5566666666666666666666655433 3333 3666677777


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCc
Q 040607          496 KLTGKIPPQLVELNALAVFSVAHNKLS  522 (629)
Q Consensus       496 ~l~~~~~~~~~~l~~L~~L~l~~N~l~  522 (629)
                      +++ .+|-.|..+..|++|-|.+|+++
T Consensus       222 kis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  222 KIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             cee-ecchhhhhhhhheeeeeccCCCC
Confidence            666 56666666667777777776666

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=4.2e-11  Score=129.67  Aligned_cols=113  Identities=27%  Similarity=0.455  Sum_probs=102.8

Q ss_pred             cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607          406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK  485 (629)
Q Consensus       406 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  485 (629)
                      .++.|++++|.+.+.+|..+..        +++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+.+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~--------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK--------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC--------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            4788999999999999988877        89999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEECcCCcCCCCCCccccCC-CCCCEEEcccCcCcccCC
Q 040607          486 QTESLDLSYNKLTGKIPPQLVEL-NALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       486 ~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~  526 (629)
                      +|+.|++++|++++.+|..+... .++..+++.+|+..|..|
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999999999999988764 467889999998776544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=4.9e-12  Score=111.70  Aligned_cols=111  Identities=29%  Similarity=0.417  Sum_probs=45.6

Q ss_pred             hcCCCCCCEEEccCCcCCCccCccccC-CCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCcccc-CCC
Q 040607           62 IKSMTSLKLLSLSNSRLNGTILDQGLC-EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPL-KHL  139 (629)
Q Consensus        62 l~~l~~L~~L~Ls~n~l~~~i~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l-~~l  139 (629)
                      +.+...+++|+|++|.|+ .|.  .+. .+.+|+.|++++|.|+.+.  .+..++.|++|++++|+|+ .++. .+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISE-GLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CH-HHHHH-
T ss_pred             cccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-cccc-chHHhC
Confidence            456667999999999998 665  355 5789999999999999876  5888999999999999998 7764 34 468


Q ss_pred             CCCCEEEccCcccccccCCcccCCCCCCcEEECCCCccee
Q 040607          140 KSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA  179 (629)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  179 (629)
                      ++|++|++++|.+........+..+++|+.|++.+|++..
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            9999999999999854555678899999999999999854

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=6.9e-12  Score=121.05  Aligned_cols=181  Identities=23%  Similarity=0.191  Sum_probs=98.1

Q ss_pred             CCCCcEEeccCccccccCC-CCcccCCCccEEEccCCCCccccc----CCCCCCccEEeccCCCCCcccchhhhhCCCCC
Q 040607          237 NTKLQTLVQVNNYLSGIFQ-MPKHARRHLTYLDVSDNFFQVHIP----VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSL  311 (629)
Q Consensus       237 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L  311 (629)
                      +.+|+.+.+.++.+..... .....+++++.|||+.|-+....+    ...+|+|+.|+++.|++.-.........+++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            3445555555554443322 233455666666666665554443    45667777777777776533333333346677


Q ss_pred             cEEEccCcccccc-cCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc-cccccCCCCCccccCC
Q 040607          312 RYLVLSNNKMKGH-IFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI-PRWLGNLSVSEDVIMP  389 (629)
Q Consensus       312 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~  389 (629)
                      +.|.++.|.++.. +......+|+|+.|++.+|...........-+..|+.|||++|.+.... -...+.++.|..|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            7777777776521 1223345677777777777433233333444556777777777665221 1334556777777777


Q ss_pred             CCcccCCC-Ccc-----ccCCCcccEEEcccCcC
Q 040607          390 NNHLEGPI-PME-----FCQLNFLQILDISKKNI  417 (629)
Q Consensus       390 ~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l  417 (629)
                      .|.+.... |+.     ...+++|++|++..|++
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            77665431 111     23344455555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.2e-10  Score=120.67  Aligned_cols=63  Identities=40%  Similarity=0.686  Sum_probs=30.9

Q ss_pred             cCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607          437 NSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP  502 (629)
Q Consensus       437 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  502 (629)
                      .++..+.+.+|++. ..+..+..+++++.|++++|.++.+..  +..+.+++.|++++|.++...|
T Consensus       232 ~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            34444444444443 223444455555555555555554332  4555555555555555554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.7e-10  Score=119.50  Aligned_cols=179  Identities=32%  Similarity=0.427  Sum_probs=122.7

Q ss_pred             CCCcEEEccCCcCcccCchhhhccc-cCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEE
Q 040607          333 TNLWRLQLDGNHFIGEIPESLSNCN-LFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILD  411 (629)
Q Consensus       333 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  411 (629)
                      +.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..++.|+.|++++|++.. ++......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence            44555555555554 2233333332 5555666666555 333445566666666666666663 333333667788888


Q ss_pred             cccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEE
Q 040607          412 ISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLD  491 (629)
Q Consensus       412 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  491 (629)
                      +++|.+....+.. ..        +..|+.|++++|.+. ..+..+..+.++..+.+++|++... +..+..+++++.|+
T Consensus       193 ls~N~i~~l~~~~-~~--------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~  261 (394)
T COG4886         193 LSGNKISDLPPEI-EL--------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLD  261 (394)
T ss_pred             ccCCccccCchhh-hh--------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceec
Confidence            8888875544431 11        456899999999654 5667788899999999999998753 56678889999999


Q ss_pred             CcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCC
Q 040607          492 LSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD  527 (629)
Q Consensus       492 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  527 (629)
                      +++|.++...+  +..+.+++.|++++|.+....+.
T Consensus       262 ~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         262 LSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccccccccc--ccccCccCEEeccCccccccchh
Confidence            99999995443  88899999999999999876664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=9e-12  Score=117.05  Aligned_cols=86  Identities=22%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             ccCCCeeecccccCCCC----CccccccccccceEeccCccccccccccc-----cCCCCCCEEECcCCcCCCC----CC
Q 040607          436 LNSMSGLDLSCNKLTGE----IPLRIGNLTRIHTLNVSHNKLTGLILSTF-----SNLKQTESLDLSYNKLTGK----IP  502 (629)
Q Consensus       436 ~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~  502 (629)
                      +++|+.|||.+|-++..    +...+..+++|+.|++++|.+......+|     ...++|+.|.+.+|.|+..    +.
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            44444444444444321    12233444555555555555443322111     1235555555555555411    11


Q ss_pred             ccccCCCCCCEEEcccCcC
Q 040607          503 PQLVELNALAVFSVAHNKL  521 (629)
Q Consensus       503 ~~~~~l~~L~~L~l~~N~l  521 (629)
                      ......+.|+.|++++|.+
T Consensus       292 ~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcchhhHHhcCCcccc
Confidence            1223345566666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=7.3e-12  Score=124.68  Aligned_cols=174  Identities=25%  Similarity=0.414  Sum_probs=111.6

Q ss_pred             CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607          284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY  363 (629)
Q Consensus       284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  363 (629)
                      ..-...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|..+..+..|..++++.|+++ ..|..+..++ |+.|-
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             cchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            33445677777777 67766654 566777777777766 45666677777777777777776 4455554443 56677


Q ss_pred             ccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeee
Q 040607          364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLD  443 (629)
Q Consensus       364 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~  443 (629)
                      +++|+++ ..|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+....++.. .         -.|..||
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~---------LpLi~lD  217 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-S---------LPLIRLD  217 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-C---------Cceeeee
Confidence            7777776 55666666677777777777766 455566666677777776666644333322 1         2455666


Q ss_pred             cccccCCCCCccccccccccceEeccCccccc
Q 040607          444 LSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTG  475 (629)
Q Consensus       444 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  475 (629)
                      ++.|++. .+|-.|..|+.|++|-|.+|.++.
T Consensus       218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             cccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            6666666 566666666666666666666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=2.1e-11  Score=111.94  Aligned_cols=131  Identities=21%  Similarity=0.260  Sum_probs=92.4

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      .|.++|||+|.|+ .+.++..-.|.++.|++|+|.+. .+.  .+..+++|+.||||+|.++.+.. +=.++-+.+.|.|
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhh-hHhhhcCEeeeeh
Confidence            4567788888777 45666777778888888888876 554  37777788888888887765543 3345677778888


Q ss_pred             ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeec
Q 040607          123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT  181 (629)
Q Consensus       123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  181 (629)
                      +.|.+. ++.  +++++-+|.+||+++|+|........++++|.|+++.+.+|++....
T Consensus       360 a~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  360 AQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            888776 443  57777778888888887764334456777888888888888775443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4.8e-11  Score=115.35  Aligned_cols=206  Identities=18%  Similarity=0.111  Sum_probs=101.0

Q ss_pred             CCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCC--CCcccCCCccEEEccCCCCccccc---CCCCCCc
Q 040607          212 QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQ--MPKHARRHLTYLDVSDNFFQVHIP---VGNMKSL  286 (629)
Q Consensus       212 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~---~~~~~~L  286 (629)
                      +++|+.+.++++...........+.++.++.|+++.|-+....+  .....+++|+.|+++.|++.....   ...+++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            34455555555544322211233455555555555554443221  122344555556665555442221   2345566


Q ss_pred             cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccC-chhhhccccCCceecc
Q 040607          287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI-PESLSNCNLFGGLYLS  365 (629)
Q Consensus       287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~  365 (629)
                      +.|.+++|.++..--.++...+|+|+.|++..|...........-+..|+.|||++|++.... -.....++.|+.|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            666666666653333334444666666666666422222233334556666666666654221 1234456666666666


Q ss_pred             ccccCCCc-ccc-----ccCCCCCccccCCCCcccCC-CCccccCCCcccEEEcccCcC
Q 040607          366 DNHLSGKI-PRW-----LGNLSVSEDVIMPNNHLEGP-IPMEFCQLNFLQILDISKKNI  417 (629)
Q Consensus       366 ~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l  417 (629)
                      .+.+.++- |+.     ...+++|+.|++..|++.+- .-..+..+++|+.|.+..|.+
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            66665321 221     23456777777777776421 111233344555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=6.2e-11  Score=108.86  Aligned_cols=131  Identities=25%  Similarity=0.229  Sum_probs=78.9

Q ss_pred             CCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccc
Q 040607          382 VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLT  461 (629)
Q Consensus       382 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  461 (629)
                      .|+++++++|.++ .+..+..-.|.++.|++++|.+...-.  +..        +++|+.||||+|.++ ....+-..+-
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~--------L~~L~~LDLS~N~Ls-~~~Gwh~KLG  352 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAE--------LPQLQLLDLSGNLLA-ECVGWHLKLG  352 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhh--------cccceEeecccchhH-hhhhhHhhhc
Confidence            4555566666555 334444555666666666666644332  222        667777777777666 4444444566


Q ss_pred             ccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC-ccccCCCCCCEEEcccCcCcccCC
Q 040607          462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP-PQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       462 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ++++|.|++|.|...  ..++.+-+|..||+++|+|..... ..++.+|-|+.+.+.+|++.+...
T Consensus       353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            777777777776542  346666777777777777763221 246667777777777777775444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.02  E-value=1.8e-10  Score=83.65  Aligned_cols=60  Identities=32%  Similarity=0.564  Sum_probs=36.6

Q ss_pred             CCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccccc
Q 040607           66 TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ  126 (629)
Q Consensus        66 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  126 (629)
                      ++|++|++++|.++ .++++.|.++++|++|++++|.++.+++++|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34566666666665 5555556666666666666666666666666666666666666654

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=8.3e-11  Score=110.66  Aligned_cols=141  Identities=18%  Similarity=0.081  Sum_probs=75.8

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCChh---HHhcCCCCcEEeccCccccccCCC-------------CcccCCCccEEEccC
Q 040607          208 FLYHQHDLKHVNLSHINLRGEFPNW---LSENNTKLQTLVQVNNYLSGIFQM-------------PKHARRHLTYLDVSD  271 (629)
Q Consensus       208 ~l~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~-------------~~~~~~~L~~L~L~~  271 (629)
                      .+..+++|++++||+|-+....+..   +...+..|++|.+.+|.+......             .....+.|+.+...+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            4456678999999998876554443   235577888888888876543211             123345566666666


Q ss_pred             CCCccccc------CCCCCCccEEeccCCCCCcc---cchhhhhCCCCCcEEEccCcccccc----cCcccCCCCCCcEE
Q 040607          272 NFFQVHIP------VGNMKSLSVLDLSKNRLIGK---IPERLAMGCFSLRYLVLSNNKMKGH----IFSKKINLTNLWRL  338 (629)
Q Consensus       272 n~~~~~~~------~~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L  338 (629)
                      |++.....      |...+.|+.+.+++|.|...   .....+..+++|+.||+.+|-++..    ....+..+++|+.|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            65543322      44455666666666655421   1111122355555555555544321    12333444555555


Q ss_pred             EccCCcCccc
Q 040607          339 QLDGNHFIGE  348 (629)
Q Consensus       339 ~l~~n~l~~~  348 (629)
                      ++++|.+...
T Consensus       247 ~l~dcll~~~  256 (382)
T KOG1909|consen  247 NLGDCLLENE  256 (382)
T ss_pred             cccccccccc
Confidence            5555555433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=2.2e-10  Score=83.10  Aligned_cols=61  Identities=38%  Similarity=0.543  Sum_probs=40.6

Q ss_pred             cccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcC
Q 040607          461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKL  521 (629)
Q Consensus       461 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  521 (629)
                      ++|++|++++|+++.++++.|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566666666666666666666666666666666666666666666666666666666654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2.5e-10  Score=118.36  Aligned_cols=246  Identities=24%  Similarity=0.232  Sum_probs=143.8

Q ss_pred             ccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcE
Q 040607          259 HARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR  337 (629)
Q Consensus       259 ~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  337 (629)
                      ..+..++.+++..|.+..... +..+.+++.|++.+|.+. .+..... .+++|++|++++|.|+.+.  .+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchh-hhhcchheecccccccccc--chhhccchhh
Confidence            345566666677777665333 667777777888777776 3433222 2677777777777776543  3445566777


Q ss_pred             EEccCCcCcccCchhhhccccCCceeccccccCCCcc-ccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607          338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIP-RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN  416 (629)
Q Consensus       338 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  416 (629)
                      |++++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+....  .+..+..+..+++..|.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence            77777777633  234456677777777777764333 1 355667777777777665322  22233344444666665


Q ss_pred             CCCCCCCCcCCCccccCCCccC--CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcC
Q 040607          417 IFGSLPSCFNPFSIKQGKPLNS--MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY  494 (629)
Q Consensus       417 l~~~~~~~~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  494 (629)
                      +....+...          ...  |+.+++++|.+. ..+..+..+..+..|++.+|++...  ..+...+.+..+....
T Consensus       220 i~~~~~l~~----------~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  220 ISKLEGLNE----------LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLND  286 (414)
T ss_pred             ceeccCccc----------chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCc
Confidence            543322211          222  667777777776 3334555667777777777776543  2344556666666666


Q ss_pred             CcCCC---CCCcc-ccCCCCCCEEEcccCcCcccCC
Q 040607          495 NKLTG---KIPPQ-LVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       495 N~l~~---~~~~~-~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |.+..   ..... ....+.++...+.+|++....+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             chhcchhhhhccccccccccccccccccCccccccc
Confidence            66541   11111 3445667777777777665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.83  E-value=5.6e-10  Score=115.75  Aligned_cols=265  Identities=23%  Similarity=0.176  Sum_probs=179.9

Q ss_pred             CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEecc
Q 040607          214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLS  292 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~  292 (629)
                      .++.++...+.+......  ...+..++.+.+..|.+.. ....+..+.+++.+++.+|.+..... +..+++|+.|+++
T Consensus        50 ~~~~~~~~~~~~~~~~~~--~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL--VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhccccchhhh--HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecc
Confidence            345555555433311111  1355667777788887776 22346677889999999999988888 8889999999999


Q ss_pred             CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCc-hhhhccccCCceeccccccCC
Q 040607          293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP-ESLSNCNLFGGLYLSDNHLSG  371 (629)
Q Consensus       293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  371 (629)
                      +|.|+ .+....  .++.|+.|++++|.++..  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+..
T Consensus       127 ~N~I~-~i~~l~--~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  127 FNKIT-KLEGLS--TLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccccc-cccchh--hccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            99988 443322  266799999999998854  345568889999999998875544 2 5778889999999998863


Q ss_pred             CccccccCCCCCccccCCCCcccCCCCccccCCC--cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607          372 KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLN--FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL  449 (629)
Q Consensus       372 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  449 (629)
                      .  .++..+..+..+++..|.+...-+  +..+.  .|+.+++++|++.... ..+..        +..+..|++.+|.+
T Consensus       201 i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~--------~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  201 I--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLEN--------LKNLPVLDLSSNRI  267 (414)
T ss_pred             c--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccccc--------cccccccchhhccc
Confidence            2  334445556666888887764332  22223  3889999999885432 22222        67888899999888


Q ss_pred             CCCCccccccccccceEeccCcccccc---ccc-cccCCCCCCEEECcCCcCCCCCC
Q 040607          450 TGEIPLRIGNLTRIHTLNVSHNKLTGL---ILS-TFSNLKQTESLDLSYNKLTGKIP  502 (629)
Q Consensus       450 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~-~~~~l~~L~~L~L~~N~l~~~~~  502 (629)
                      ...  ..+...+.+..+....|.+...   ... .....+.++...+.+|.+....+
T Consensus       268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            632  2345567777788888876532   111 14567888899999998875544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.75  E-value=4e-09  Score=116.87  Aligned_cols=126  Identities=18%  Similarity=0.231  Sum_probs=70.7

Q ss_pred             cceeeccCcccCccchhhhcCCCCCCEEEccCCc--CCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607           44 IGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSR--LNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN  121 (629)
Q Consensus        44 l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  121 (629)
                      .+...+-+|.+.. ++.. ..++.|++|-+.+|.  +. .++.+.|..++.|++|||++|.--+-.|..++++-+||+|+
T Consensus       525 ~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  525 VRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             eeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            3444555555432 2222 233456666666664  33 55554566666677777766543334455666666667777


Q ss_pred             cccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCC
Q 040607          122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENN  175 (629)
Q Consensus       122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  175 (629)
                      ++++.++ .+|. .++++++|.+|++..+.....+ .+....+++|++|.+...
T Consensus       602 L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  602 LSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccCCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence            7666666 6665 6666666667666665433222 234444666666666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.68  E-value=2.1e-08  Score=111.26  Aligned_cols=277  Identities=19%  Similarity=0.176  Sum_probs=131.1

Q ss_pred             CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc--ccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccE
Q 040607          213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY--LSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSV  288 (629)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~  288 (629)
                      ...+...+-+|++. .++..  ..++.|++|-+..|.  +.......|..++.|+.||+++|.-.+..|  ++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            34455555555544 23322  234456666666654  444444445566666666666654433344  555666666


Q ss_pred             EeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcC--cccCchhhhccccCCceeccc
Q 040607          289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF--IGEIPESLSNCNLFGGLYLSD  366 (629)
Q Consensus       289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~  366 (629)
                      |++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+.....  +...-..+..+..|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            666666665 56666554 66666666666544333345555566666666654421  111222233334444443322


Q ss_pred             cccCCCccccccCCCCCc----cccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCee
Q 040607          367 NHLSGKIPRWLGNLSVSE----DVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL  442 (629)
Q Consensus       367 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L  442 (629)
                      ...  ..-..+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+...............  .++++..+
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~--~f~~l~~~  752 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL--CFPNLSKV  752 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh--hHHHHHHH
Confidence            211  0000111112222    2222222222 3344566677777777777766433222211100000  02233333


Q ss_pred             ecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCC
Q 040607          443 DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK  500 (629)
Q Consensus       443 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  500 (629)
                      ...++... ..+.+....++|+.|.+.++.....+......+..++++-+..+.+.+.
T Consensus       753 ~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  753 SILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             Hhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            33333322 2222333457777777777765555555555555555555555555533

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.66  E-value=3.9e-10  Score=115.56  Aligned_cols=163  Identities=23%  Similarity=0.298  Sum_probs=105.8

Q ss_pred             chhccCCCCCcEEEcCCCCceeecchhhhhcCc----------------------cchhc-----ccceeeccCcccCcc
Q 040607            5 LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGP----------------------WMVQC-----FIGFRAMDGTALDKN   57 (629)
Q Consensus         5 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----------------------~~~~~-----~l~~L~l~~~~~~~~   57 (629)
                      |..|..++.||+|.|.+|.++-.  .++..+..                      ..+..     -|.+.+.++|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            45677899999999999977432  22211100                      00000     1224556666655 3


Q ss_pred             chhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccC
Q 040607           58 FLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLK  137 (629)
Q Consensus        58 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~  137 (629)
                      ..+++.-++.|++|+|++|+++ ++.  .+..+++|++|||++|.+..++--...++. |+.|++++|.++ ++-  ++.
T Consensus       179 mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL~--gie  251 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TLR--GIE  251 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hhh--hHH
Confidence            4556666777788888888776 443  577777788888888877766655555666 778888888776 443  577


Q ss_pred             CCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcc
Q 040607          138 HLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI  177 (629)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  177 (629)
                      ++++|+.||+++|-+.+......+..+..|+.|.+.+|++
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7778888888887776544444556667777777777766

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=4.6e-10  Score=115.05  Aligned_cols=108  Identities=24%  Similarity=0.312  Sum_probs=53.4

Q ss_pred             ccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEE
Q 040607          436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFS  515 (629)
Q Consensus       436 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  515 (629)
                      ++.++.|+|+.|+++ ... .+..++.|++|||++|.+..++--...++. |..|.+++|.++..  ..+.++.+|+.||
T Consensus       186 l~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence            455555555555554 222 445555555555555555544333333333 55555555555422  1344555555555


Q ss_pred             cccCcCcccCC-CccccccccCCCCCCCCCCCCC
Q 040607          516 VAHNKLSGKTP-DWVAQFATFNGSSYDGNPFLSS  548 (629)
Q Consensus       516 l~~N~l~~~~~-~~~~~~~~l~~l~~~~np~~c~  548 (629)
                      +++|-+.+.-+ ..+..+..|..+.+.|||..|.
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            65555543322 1123345555566666665553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=6.8e-09  Score=95.69  Aligned_cols=177  Identities=18%  Similarity=0.154  Sum_probs=100.5

Q ss_pred             CcEEEccCCcCccc-CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcc-cCC-CCccccCCCcccEEE
Q 040607          335 LWRLQLDGNHFIGE-IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL-EGP-IPMEFCQLNFLQILD  411 (629)
Q Consensus       335 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~  411 (629)
                      |+++|+++..++.. ....+..|.+|+.|.+.++++.+.+-..++.-.+|+.++++.+.- +.. ..-.+..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            55555555544321 122344555555555555555554444555555555555555432 111 111245566666666


Q ss_pred             cccCcCCCCCCC-CcCCCccccCCCccCCCeeeccccc--CC-CCCccccccccccceEeccCc-cccccccccccCCCC
Q 040607          412 ISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNK--LT-GEIPLRIGNLTRIHTLNVSHN-KLTGLILSTFSNLKQ  486 (629)
Q Consensus       412 l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  486 (629)
                      ++.|.++...-. ....       .-++|+.|+++++.  +. ..+..-...+++|..||||+| .++......|-+++.
T Consensus       267 lsWc~l~~~~Vtv~V~h-------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAH-------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             chHhhccchhhhHHHhh-------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            666654322211 1111       13567777777763  11 122223356889999999988 455444456678899


Q ss_pred             CCEEECcCCcCCCCCCccc---cCCCCCCEEEcccCc
Q 040607          487 TESLDLSYNKLTGKIPPQL---VELNALAVFSVAHNK  520 (629)
Q Consensus       487 L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~  520 (629)
                      |++|.++.|..  ++|+.+   ...|+|.+||+.++-
T Consensus       340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  340 LQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             heeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            99999999876  566654   446889999998753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.1e-08  Score=94.42  Aligned_cols=179  Identities=21%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             CCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEc
Q 040607          141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNL  220 (629)
Q Consensus       141 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L  220 (629)
                      .|++|||++..++.......+..|.+|+.|.+.++.+...                        +...++.-.+|+.+++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~------------------------I~~~iAkN~~L~~lnl  241 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP------------------------IVNTIAKNSNLVRLNL  241 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH------------------------HHHHHhccccceeecc
Confidence            3566666655555322223445555666666655554322                        2334445555566666


Q ss_pred             cCC-CCCCCCChhHHhcCCCCcEEeccCccccccCC-CCc-ccCCCccEEEccCCCCc---cccc--CCCCCCccEEecc
Q 040607          221 SHI-NLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQ-MPK-HARRHLTYLDVSDNFFQ---VHIP--VGNMKSLSVLDLS  292 (629)
Q Consensus       221 ~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~-~~~~~L~~L~L~~n~~~---~~~~--~~~~~~L~~L~L~  292 (629)
                      +.+ .++......++..++.|..|+++.|.+..... ... .--++|+.|++++..-.   ....  ...+++|..||++
T Consensus       242 sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  242 SMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             ccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence            554 33333333344555555555555554432110 011 11245666666654321   1111  4567777777777


Q ss_pred             CCCCC-cccchhhhhCCCCCcEEEccCccc-ccccCcccCCCCCCcEEEccCCc
Q 040607          293 KNRLI-GKIPERLAMGCFSLRYLVLSNNKM-KGHIFSKKINLTNLWRLQLDGNH  344 (629)
Q Consensus       293 ~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~  344 (629)
                      +|... ......++ .++.|++|.++.|.. .....-.+...|+|.+|++.++-
T Consensus       322 D~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  322 DSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            76432 22223333 367777777777742 11111234556777777777663

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2.7e-07  Score=85.38  Aligned_cols=85  Identities=27%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             CCCCccEEeccCCCCCcccc--hhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcc-cCchhhhcccc
Q 040607          282 NMKSLSVLDLSKNRLIGKIP--ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIG-EIPESLSNCNL  358 (629)
Q Consensus       282 ~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~  358 (629)
                      .++.++.+|+.+|.+.+ ..  ..+...+|.|+.|+++.|.+...+...-....+|+.|-+.+..+.- .....+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             Hhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            34566677777776652 11  2233456777777777776664332221345567777776665431 12234445666


Q ss_pred             CCceecccc
Q 040607          359 FGGLYLSDN  367 (629)
Q Consensus       359 L~~L~l~~n  367 (629)
                      +++|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            666666666

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=2.5e-07  Score=85.50  Aligned_cols=85  Identities=27%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             CCCCCCEEEccCCcCCC--ccCccccCCCCCCcEEEccCCcCccCCCccc-CCCCCCCeeecccccCCcccCccccCCCC
Q 040607           64 SMTSLKLLSLSNSRLNG--TILDQGLCEFVHLQELHVDHNNLYGVPPWCL-GNMTSLQVLNISSNQLTGNISSPPLKHLK  140 (629)
Q Consensus        64 ~l~~L~~L~Ls~n~l~~--~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~i~~~~l~~l~  140 (629)
                      .+++++.+||.+|.+++  +|.. .+.++|.|++|+++.|++..... .+ ....+|++|.|.+..+...-....+..+|
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            34556666666665541  1111 23455555555555555433221 12 23445555555555443222222344445


Q ss_pred             CCCEEEccCc
Q 040607          141 SIQELKLSNN  150 (629)
Q Consensus       141 ~L~~L~L~~n  150 (629)
                      .++.|.++.|
T Consensus       147 ~vtelHmS~N  156 (418)
T KOG2982|consen  147 KVTELHMSDN  156 (418)
T ss_pred             hhhhhhhccc
Confidence            5555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=1.8e-07  Score=85.32  Aligned_cols=94  Identities=11%  Similarity=0.159  Sum_probs=46.5

Q ss_pred             ccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCc---ccCccch-------hhhcCCCCCCEEEccCCc
Q 040607            8 LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGT---ALDKNFL-------QVIKSMTSLKLLSLSNSR   77 (629)
Q Consensus         8 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~---~~~~~~~-------~~l~~l~~L~~L~Ls~n~   77 (629)
                      +..+..+..+|||||.++..-..++++.-  .-...|++.+++.-   +....++       .++.+|++|+..+||+|-
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~i--a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVI--ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHH--hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            34456666777777766555555554431  11234444444421   1111222       234556666666666666


Q ss_pred             CCCccCc---cccCCCCCCcEEEccCCcC
Q 040607           78 LNGTILD---QGLCEFVHLQELHVDHNNL  103 (629)
Q Consensus        78 l~~~i~~---~~~~~l~~L~~L~L~~n~i  103 (629)
                      +..+.|+   +.+++-..|.+|.+++|.+
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            5433332   1234455666666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.18  E-value=3e-06  Score=74.31  Aligned_cols=126  Identities=17%  Similarity=0.234  Sum_probs=87.9

Q ss_pred             ceeeccCcccCccchhhhcC-CCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecc
Q 040607           45 GFRAMDGTALDKNFLQVIKS-MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS  123 (629)
Q Consensus        45 ~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  123 (629)
                      ++++|.+.++....  .++. +.+...+||++|.+. .++  .|.+++.|.+|.+.+|+|+.+.|.--.-+++|+.|.+.
T Consensus        22 ~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccchh--hccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            46777777665321  1222 245677889988886 554  58888899999999999988888655567889999999


Q ss_pred             cccCCccc-CccccCCCCCCCEEEccCcccccc--cCCcccCCCCCCcEEECCCCc
Q 040607          124 SNQLTGNI-SSPPLKHLKSIQELKLSNNYFQIP--ISLGPLYNHSNLKIFDSENNQ  176 (629)
Q Consensus       124 ~n~l~~~i-~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~  176 (629)
                      +|.|. .+ .-+.+..+|+|++|.+-+|.++..  .....+..+|+|+.||..+-.
T Consensus        97 nNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   97 NNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             Ccchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            98776 32 222477788899998888887621  122355677888888887643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.16  E-value=9.5e-08  Score=77.94  Aligned_cols=81  Identities=21%  Similarity=0.374  Sum_probs=40.4

Q ss_pred             CCeeecccccCCCCCccccc-cccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607          439 MSGLDLSCNKLTGEIPLRIG-NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA  517 (629)
Q Consensus       439 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  517 (629)
                      |+..+|++|.+. ..|..|. ..+..+.|+|++|.|++++.+ +..++.|+.|+++.|++. ..|+.+..+.++-.||..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            344445555544 3333332 233555555555555543322 555555555555555555 445555555555555555


Q ss_pred             cCcCc
Q 040607          518 HNKLS  522 (629)
Q Consensus       518 ~N~l~  522 (629)
                      +|.+.
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.05  E-value=3.7e-06  Score=55.59  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=13.6

Q ss_pred             CCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCc
Q 040607           68 LKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLY  104 (629)
Q Consensus        68 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~  104 (629)
                      |++|++++|.++ ++++ .+.++++|++|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC
Confidence            444444444443 3332 2444444444444444443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=6.9e-07  Score=73.02  Aligned_cols=88  Identities=19%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607          280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF  359 (629)
Q Consensus       280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  359 (629)
                      +.....|...++++|.+. .+|..+...++.++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|+.+..+.++
T Consensus        49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            334445556666666665 566665555556666666666666 34455666666666666666665 334455556666


Q ss_pred             CceeccccccC
Q 040607          360 GGLYLSDNHLS  370 (629)
Q Consensus       360 ~~L~l~~n~l~  370 (629)
                      -.|+..+|.+.
T Consensus       126 ~~Lds~~na~~  136 (177)
T KOG4579|consen  126 DMLDSPENARA  136 (177)
T ss_pred             HHhcCCCCccc
Confidence            66666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=2.9e-06  Score=77.66  Aligned_cols=138  Identities=21%  Similarity=0.142  Sum_probs=72.4

Q ss_pred             hhcCCCCCCEEEccCCCCCCCCChhH---HhcCCCCcEEeccCccccccCCCC-------------cccCCCccEEEccC
Q 040607          208 FLYHQHDLKHVNLSHINLRGEFPNWL---SENNTKLQTLVQVNNYLSGIFQMP-------------KHARRHLTYLDVSD  271 (629)
Q Consensus       208 ~l~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~L~~  271 (629)
                      .+..|++|+.++|++|.+....|+.+   .+..+.|.+|.+++|.+-.+.-..             ...-|.|+......
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            35577888888888888776666543   245567888888887654332111             12235566666666


Q ss_pred             CCCccccc------CCCCCCccEEeccCCCCCcc-----cchhhhhCCCCCcEEEccCccccccc----CcccCCCCCCc
Q 040607          272 NFFQVHIP------VGNMKSLSVLDLSKNRLIGK-----IPERLAMGCFSLRYLVLSNNKMKGHI----FSKKINLTNLW  336 (629)
Q Consensus       272 n~~~~~~~------~~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~  336 (629)
                      |++..-..      +..-..|+++.+.+|.|...     +....+ .+.+|+.||+.+|-++-..    ...++..+.|+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            65543222      22334566666666655421     011111 1455666666665544211    12233344455


Q ss_pred             EEEccCCcCc
Q 040607          337 RLQLDGNHFI  346 (629)
Q Consensus       337 ~L~l~~n~l~  346 (629)
                      .|.+..|-++
T Consensus       246 EL~lnDClls  255 (388)
T COG5238         246 ELRLNDCLLS  255 (388)
T ss_pred             hccccchhhc
Confidence            5555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.03  E-value=8.1e-06  Score=71.62  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=82.5

Q ss_pred             CCEEEccCCcCCCccCccccC-CCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEE
Q 040607           68 LKLLSLSNSRLNGTILDQGLC-EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK  146 (629)
Q Consensus        68 L~~L~Ls~n~l~~~i~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  146 (629)
                      =+.++|++.++. .+..  ++ -+.+...+||++|.+..+.  .|..++.|.+|.+++|+|+ .|.+.--..+++|+.|.
T Consensus        21 e~e~~LR~lkip-~ien--lg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN--LGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             cccccccccccc-chhh--ccccccccceecccccchhhcc--cCCCccccceEEecCCcce-eeccchhhhccccceEE
Confidence            456777777664 3222  22 2346789999999987665  5889999999999999999 88774445568899999


Q ss_pred             ccCcccccccCCcccCCCCCCcEEECCCCcceee
Q 040607          147 LSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ  180 (629)
Q Consensus       147 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  180 (629)
                      +.+|.+..-.....+..+|+|++|.+-+|++...
T Consensus        95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen   95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK  128 (233)
T ss_pred             ecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence            9999988555556788999999999999987543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.97  E-value=2.1e-07  Score=90.09  Aligned_cols=281  Identities=16%  Similarity=0.088  Sum_probs=122.9

Q ss_pred             hhhcCCCCCCEEEccCC-CCCCCCChhHHhcCCCCcEEeccCc-cccccCCC-CcccCCCccEEEccCCCCccc---cc-
Q 040607          207 KFLYHQHDLKHVNLSHI-NLRGEFPNWLSENNTKLQTLVQVNN-YLSGIFQM-PKHARRHLTYLDVSDNFFQVH---IP-  279 (629)
Q Consensus       207 ~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~---~~-  279 (629)
                      .....++++++|++.++ ++++.....+...++.++++++..| .++...-. .-.++++|++++++.+.-...   .+ 
T Consensus       158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~  237 (483)
T KOG4341|consen  158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL  237 (483)
T ss_pred             HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence            44456777788877776 3444444555566777777777663 23322111 223556666666665532211   11 


Q ss_pred             CCCCCCccEEeccCCCCC-cccchhhhhCCCCCcEEEccCcc-cccccC-cccCCCCCCcEEEccCCcC-cccCch-hhh
Q 040607          280 VGNMKSLSVLDLSKNRLI-GKIPERLAMGCFSLRYLVLSNNK-MKGHIF-SKKINLTNLWRLQLDGNHF-IGEIPE-SLS  354 (629)
Q Consensus       280 ~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~-~~~  354 (629)
                      +.++..++.+.+.+|.-. .+.-..+...+..+.++++..+. ++...- ..-..+..|+.|+.+++.- +...-. --.
T Consensus       238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~  317 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ  317 (483)
T ss_pred             hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence            334444555544444211 01111111223334444444432 221110 0012334455555554422 111111 112


Q ss_pred             ccccCCceeccccccCC-CccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccC
Q 040607          355 NCNLFGGLYLSDNHLSG-KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG  433 (629)
Q Consensus       355 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  433 (629)
                      ++.+|+.+.+..++..+ .-...+                       -.+++.|+.+++.++......  .+..    ..
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l-----------------------~rn~~~Le~l~~e~~~~~~d~--tL~s----ls  368 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTML-----------------------GRNCPHLERLDLEECGLITDG--TLAS----LS  368 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhh-----------------------hcCChhhhhhcccccceehhh--hHhh----hc
Confidence            34445555554443211 000011                       123345555555554331111  0000    01


Q ss_pred             CCccCCCeeecccccCC-CC----CccccccccccceEeccCcccc-ccccccccCCCCCCEEECcCCcCC-C-CCCccc
Q 040607          434 KPLNSMSGLDLSCNKLT-GE----IPLRIGNLTRIHTLNVSHNKLT-GLILSTFSNLKQTESLDLSYNKLT-G-KIPPQL  505 (629)
Q Consensus       434 ~~~~~L~~L~L~~n~l~-~~----~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~-~~~~~~  505 (629)
                      ..++.|+.|.++.|... +.    ....-.++..|+.+.|++++.. +...+.+...++|+.+++-+++-- . .+...-
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence            12566667777666532 11    0112234566777777777543 333445566777877777776432 1 122223


Q ss_pred             cCCCCCCEEEc
Q 040607          506 VELNALAVFSV  516 (629)
Q Consensus       506 ~~l~~L~~L~l  516 (629)
                      .++|++++..+
T Consensus       449 ~~lp~i~v~a~  459 (483)
T KOG4341|consen  449 THLPNIKVHAY  459 (483)
T ss_pred             hhCccceehhh
Confidence            44666655443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=2.6e-06  Score=92.34  Aligned_cols=137  Identities=18%  Similarity=0.236  Sum_probs=86.3

Q ss_pred             cccceeeccCcc-cCccchhhhc-CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCe
Q 040607           42 CFIGFRAMDGTA-LDKNFLQVIK-SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV  119 (629)
Q Consensus        42 ~~l~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  119 (629)
                      ..|++||++|.. +....|..++ -+|.|++|.+++-.+..+=-.+.+.++++|..||+|+++++.+  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            457788888765 3445566665 4688888888776653221112456778888888888887766  46778888888


Q ss_pred             eecccccCCcccCccccCCCCCCCEEEccCccccccc--C---CcccCCCCCCcEEECCCCcceee
Q 040607          120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPI--S---LGPLYNHSNLKIFDSENNQIYAQ  180 (629)
Q Consensus       120 L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~--~---~~~~~~l~~L~~L~l~~n~~~~~  180 (629)
                      |.+.+=.+...-.-..+-+|++|++||+|........  .   .+--..+|+|+.||.|++.+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            8777655542111124667788888888765433100  0   01223478888888888776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=1.1e-05  Score=53.36  Aligned_cols=36  Identities=36%  Similarity=0.571  Sum_probs=19.5

Q ss_pred             ccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607          462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT  498 (629)
Q Consensus       462 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  498 (629)
                      +|++|++++|+|++++ ..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence            4556666666665443 23556666666666666655

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=7.2e-06  Score=88.99  Aligned_cols=131  Identities=20%  Similarity=0.204  Sum_probs=89.2

Q ss_pred             CCCCEEEccCCcCCCccCccc-cCCCCCCcEEEccCCcCccCC-CcccCCCCCCCeeecccccCCcccCccccCCCCCCC
Q 040607           66 TSLKLLSLSNSRLNGTILDQG-LCEFVHLQELHVDHNNLYGVP-PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ  143 (629)
Q Consensus        66 ~~L~~L~Ls~n~l~~~i~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~  143 (629)
                      .+|++||+++......-.... -..+|+|+.|.+++-.+.... -....++|+|..||+|++.++ .+  .+++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence            679999998865431222112 346889999999886653321 123567899999999999888 55  3789999999


Q ss_pred             EEEccCcccccccCCcccCCCCCCcEEECCCCcceeecC-----CCCcCCcccccEEEecc
Q 040607          144 ELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE-----SHSLTPKFQLNSIILSH  199 (629)
Q Consensus       144 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~L~~L~l~~  199 (629)
                      +|.+.+=.+........+.++++|+.||+|..+......     .+....+++|+.|+.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            999888777643444577889999999998875533220     01123356888888883

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.86  E-value=5.3e-05  Score=64.57  Aligned_cols=84  Identities=13%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCC
Q 040607           61 VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK  140 (629)
Q Consensus        61 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~  140 (629)
                      +|.++++|+.+.+.. .+. .+...+|.++++|+.+.+.++ +..+...+|.++++|+.+.+.+ .+. .++...|..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            344444555555443 233 444444555544555554443 4444444444444455555433 222 33333444444


Q ss_pred             CCCEEEccC
Q 040607          141 SIQELKLSN  149 (629)
Q Consensus       141 ~L~~L~L~~  149 (629)
                      +|+.+++..
T Consensus        82 ~l~~i~~~~   90 (129)
T PF13306_consen   82 NLKNIDIPS   90 (129)
T ss_dssp             TECEEEETT
T ss_pred             cccccccCc
Confidence            454444433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.74  E-value=7.7e-07  Score=86.35  Aligned_cols=111  Identities=20%  Similarity=0.125  Sum_probs=47.1

Q ss_pred             CCCCccEEeccCCC-CCcccchhhhhCCCCCcEEEccCcccccc--cCcccCCCCCCcEEEccCCcCcccC-----chhh
Q 040607          282 NMKSLSVLDLSKNR-LIGKIPERLAMGCFSLRYLVLSNNKMKGH--IFSKKINLTNLWRLQLDGNHFIGEI-----PESL  353 (629)
Q Consensus       282 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~  353 (629)
                      ..++|+.+.++.++ +++.-...+..+++.|+.+++..+.....  ....-.+++.|+.+.+++|......     ...-
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            44555555555553 22111222333445555555555533211  1111124455566655555332111     1111


Q ss_pred             hccccCCceeccccccCC-CccccccCCCCCccccCCCCc
Q 040607          354 SNCNLFGGLYLSDNHLSG-KIPRWLGNLSVSEDVIMPNNH  392 (629)
Q Consensus       354 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~  392 (629)
                      .....++.+.+++++... .....+..+++|+.+++-+++
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            233445555565555431 222334445566665555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.71  E-value=8.8e-05  Score=63.21  Aligned_cols=117  Identities=23%  Similarity=0.333  Sum_probs=68.6

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      .++.+.+.. .+......+|..+++|+.+.+..+ +. .++..+|.++++++.+.+.+ .+..+....|..+++|+.+++
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            455666653 455555667888989999999875 65 78888899998899999976 566677778899999999999


Q ss_pred             ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCc
Q 040607          123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK  168 (629)
Q Consensus       123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  168 (629)
                      ..+ +. .++...|.++ +|+.+.+..+ +. .++...|.++++|+
T Consensus        89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~~-~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   89 PSN-IT-EIGSSSFSNC-NLKEINIPSN-IT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--B-EEHTTTTTT--T--EEE-TTB--S-S----GGG------
T ss_pred             Ccc-cc-EEchhhhcCC-CceEEEECCC-cc-EECCccccccccCC
Confidence            776 55 7777788887 9999998763 33 45556787777764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00016  Score=72.34  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=46.0

Q ss_pred             CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607          280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF  359 (629)
Q Consensus       280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  359 (629)
                      +..+.+++.|++++|.++ .+|.    -..+|++|.++++.--...|..+  .++|++|++++|.....+|.      .|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence            344677888888888777 6662    14568888888754333444433  25678888887732223332      35


Q ss_pred             Cceeccccc
Q 040607          360 GGLYLSDNH  368 (629)
Q Consensus       360 ~~L~l~~n~  368 (629)
                      +.|+++.+.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            666665544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00019  Score=71.90  Aligned_cols=138  Identities=16%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             hhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccc
Q 040607          352 SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK  431 (629)
Q Consensus       352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  431 (629)
                      .+..+.+++.|++++|.+. .+|.   -.++|+.|.+++|.-...+|..+  .++|++|++++|.....+          
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL----------  110 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL----------  110 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc----------
Confidence            3556789999999999877 4452   23479999999865544566544  358999999998432222          


Q ss_pred             cCCCccCCCeeecccccCCCCCccccccc-cccceEeccCcc-ccc-cccccccCCCCCCEEECcCCcCCCCCCccccCC
Q 040607          432 QGKPLNSMSGLDLSCNKLTGEIPLRIGNL-TRIHTLNVSHNK-LTG-LILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL  508 (629)
Q Consensus       432 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  508 (629)
                          .++|+.|+++.+... .    +..+ ++|+.|.+.+++ ... ..+..+.  ++|++|++++|... ..|+.+.  
T Consensus       111 ----P~sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--  176 (426)
T PRK15386        111 ----PESVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--  176 (426)
T ss_pred             ----ccccceEEeCCCCCc-c----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--
Confidence                346777777766543 1    1122 456777775432 111 0111111  67888888888766 4454444  


Q ss_pred             CCCCEEEcccC
Q 040607          509 NALAVFSVAHN  519 (629)
Q Consensus       509 ~~L~~L~l~~N  519 (629)
                      .+|+.|+++.|
T Consensus       177 ~SLk~L~ls~n  187 (426)
T PRK15386        177 ESLQSITLHIE  187 (426)
T ss_pred             ccCcEEEeccc
Confidence            47888888776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=5.4e-05  Score=69.61  Aligned_cols=112  Identities=24%  Similarity=0.320  Sum_probs=70.7

Q ss_pred             chhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCC--cCccCCCcccCCCCCCCeeecccccCCc--ccCc
Q 040607           58 FLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHN--NLYGVPPWCLGNMTSLQVLNISSNQLTG--NISS  133 (629)
Q Consensus        58 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~i~~  133 (629)
                      +......+..|+.|++.+..++ ++.  .|..+++|++|.++.|  ++..-.+-....+|+|++|++++|++..  +++ 
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-  110 (260)
T ss_pred             cccccccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-
Confidence            4444556667777777777776 443  4777888888888888  4433333234556888888888887752  222 


Q ss_pred             cccCCCCCCCEEEccCccccc--ccCCcccCCCCCCcEEECCC
Q 040607          134 PPLKHLKSIQELKLSNNYFQI--PISLGPLYNHSNLKIFDSEN  174 (629)
Q Consensus       134 ~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~  174 (629)
                       .+..+.+|..|++.+|..+.  ......|.-+++|++||-..
T Consensus       111 -pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  111 -PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             -hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence             35566677788887776552  11123556677777776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=6e-06  Score=75.90  Aligned_cols=102  Identities=25%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCc-cccCCCCCC
Q 040607           64 SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISS-PPLKHLKSI  142 (629)
Q Consensus        64 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~l~~l~~L  142 (629)
                      .+.+.+.|+.-+|.++ +|.  ....++.|++|.||-|+|+.+.|  |..|++|++|+|..|.|. ++.+ .-+.++|+|
T Consensus        17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsL   90 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL   90 (388)
T ss_pred             HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence            3567778888888887 654  36678888999999888887765  788888999999888887 4432 136778888


Q ss_pred             CEEEccCcccccccCC----cccCCCCCCcEEE
Q 040607          143 QELKLSNNYFQIPISL----GPLYNHSNLKIFD  171 (629)
Q Consensus       143 ~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~  171 (629)
                      ++|-|..|.-.+..+.    ..+..+|+|+.||
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888776543321    3455677777766

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.05  E-value=0.00037  Score=64.26  Aligned_cols=91  Identities=26%  Similarity=0.302  Sum_probs=68.5

Q ss_pred             ccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccc--cCCcccCccccCCCCCCCEEEccCcccccccCCcccCC
Q 040607           86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN--QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYN  163 (629)
Q Consensus        86 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  163 (629)
                      ....+..|+.|++.+..++.+.  .|-.+++|+.|.++.|  ++++.++. ....+++|++|++++|++........+..
T Consensus        38 l~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence            3445667888888888776554  5788999999999999  66555554 45666999999999999874444456777


Q ss_pred             CCCCcEEECCCCccee
Q 040607          164 HSNLKIFDSENNQIYA  179 (629)
Q Consensus       164 l~~L~~L~l~~n~~~~  179 (629)
                      +++|..|++..|..+.
T Consensus       115 l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTN  130 (260)
T ss_pred             hcchhhhhcccCCccc
Confidence            8888888888876543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00014  Score=67.11  Aligned_cols=99  Identities=25%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccch-hhhhCCCCCcEEEc
Q 040607          238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPE-RLAMGCFSLRYLVL  316 (629)
Q Consensus       238 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L  316 (629)
                      .+.++|+..+|.++++.  ....++.|+.|.|+-|+++...++..|++|++|+|..|.|. .+.+ ....++++|+.|-|
T Consensus        19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence            34455556666555432  22356667777777777777777778888888888888776 3332 23345677777777


Q ss_pred             cCcccccccCc-----ccCCCCCCcEEE
Q 040607          317 SNNKMKGHIFS-----KKINLTNLWRLQ  339 (629)
Q Consensus       317 ~~n~l~~~~~~-----~~~~l~~L~~L~  339 (629)
                      ..|.-.+..+.     .+..+|+|++||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            77765544332     234567777664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.08  E-value=0.00079  Score=71.98  Aligned_cols=62  Identities=29%  Similarity=0.292  Sum_probs=28.3

Q ss_pred             CCCccEEeccCCC-CCcccchhhhhCCCCCcEEEccCcc-cccccCcc-cCCCCCCcEEEccCCc
Q 040607          283 MKSLSVLDLSKNR-LIGKIPERLAMGCFSLRYLVLSNNK-MKGHIFSK-KINLTNLWRLQLDGNH  344 (629)
Q Consensus       283 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~  344 (629)
                      +.+|+.|+++++. +++..-..+...+++|++|.+.++. ++...-.. ...++.|++|+++++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3555555555554 3333333333335555555555444 33222111 1234555555555553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.71  E-value=0.00076  Score=72.07  Aligned_cols=113  Identities=23%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             CCCCCCEEEccCCcCCCccC-ccccCCCCCCcEEEccCC-cCccCCC----cccCCCCCCCeeeccccc-CCcccCcccc
Q 040607           64 SMTSLKLLSLSNSRLNGTIL-DQGLCEFVHLQELHVDHN-NLYGVPP----WCLGNMTSLQVLNISSNQ-LTGNISSPPL  136 (629)
Q Consensus        64 ~l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~L~~n-~i~~~~~----~~~~~l~~L~~L~L~~n~-l~~~i~~~~l  136 (629)
                      .+++|+.|.+..+.-..... ......+++|+.|+++++ ......+    .....+++|+.|+++.+. ++ ...-..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHH
Confidence            36777777777664321211 113556677777777762 1111111    123446777777777776 44 2211122


Q ss_pred             -CCCCCCCEEEccCcc-cccccCCcccCCCCCCcEEECCCCcc
Q 040607          137 -KHLKSIQELKLSNNY-FQIPISLGPLYNHSNLKIFDSENNQI  177 (629)
Q Consensus       137 -~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~  177 (629)
                       ..+++|++|.+.++. ++...-......++.|++|+++++..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             226777777766665 44222222334566677777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.95  E-value=0.0093  Score=32.57  Aligned_cols=16  Identities=38%  Similarity=0.536  Sum_probs=6.9

Q ss_pred             CCEEEccCCcCCCccCc
Q 040607           68 LKLLSLSNSRLNGTILD   84 (629)
Q Consensus        68 L~~L~Ls~n~l~~~i~~   84 (629)
                      |++|||++|.++ .+|+
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            344444444444 4443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.77  E-value=0.018  Score=31.47  Aligned_cols=12  Identities=42%  Similarity=0.589  Sum_probs=6.1

Q ss_pred             cceEeccCcccc
Q 040607          463 IHTLNVSHNKLT  474 (629)
Q Consensus       463 L~~L~Ls~n~l~  474 (629)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            445555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.70  E-value=0.0012  Score=68.80  Aligned_cols=171  Identities=21%  Similarity=0.211  Sum_probs=98.3

Q ss_pred             hccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCcc----chhhhcCCCCCCEEEccCCcCCCc-
Q 040607            7 ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKN----FLQVIKSMTSLKLLSLSNSRLNGT-   81 (629)
Q Consensus         7 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~-   81 (629)
                      .+.....|..|++++|.+++.-...+.+. .....+.+++|++..|.+++.    +.+.+....+++.++++.|.+... 
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~-l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g  188 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEG-LRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG  188 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhh-cccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence            45667777788888888776655555442 112235667777777777654    445566677788888888776310 


Q ss_pred             --cCcccc----CCCCCCcEEEccCCcCccCCC----cccCCCCC-CCeeecccccCCcc----cCccccCCC-CCCCEE
Q 040607           82 --ILDQGL----CEFVHLQELHVDHNNLYGVPP----WCLGNMTS-LQVLNISSNQLTGN----ISSPPLKHL-KSIQEL  145 (629)
Q Consensus        82 --i~~~~~----~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~-L~~L~L~~n~l~~~----i~~~~l~~l-~~L~~L  145 (629)
                        ....++    ....++++|.+++|.++...-    ..+...+. ++.|++..|.+.+.    +.+ .+..+ ..++++
T Consensus       189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~-~l~~~~~~l~~l  267 (478)
T KOG4308|consen  189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLP-CLSVLSETLRVL  267 (478)
T ss_pred             hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHH-Hhcccchhhhhh
Confidence              111122    245677778887776652211    13344455 66677777766522    111 34444 566777


Q ss_pred             EccCccccccc---CCcccCCCCCCcEEECCCCccee
Q 040607          146 KLSNNYFQIPI---SLGPLYNHSNLKIFDSENNQIYA  179 (629)
Q Consensus       146 ~L~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~~~~  179 (629)
                      +++.|.++...   -......++.++++.++.|.+..
T Consensus       268 ~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  268 DLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            77777765211   11234455667777777766643

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.57  E-value=0.001  Score=69.33  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=17.9

Q ss_pred             ccEEEccCCCCccccc------CCCCCCccEEeccCCCCC
Q 040607          264 LTYLDVSDNFFQVHIP------VGNMKSLSVLDLSKNRLI  297 (629)
Q Consensus       264 L~~L~L~~n~~~~~~~------~~~~~~L~~L~L~~n~l~  297 (629)
                      +..+.+.+|.+.....      +...++|+.|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            4445555555443222      445566666666666655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.42  E-value=0.056  Score=27.30  Aligned_cols=13  Identities=54%  Similarity=0.792  Sum_probs=4.9

Q ss_pred             CCCEEEccCCcCC
Q 040607           67 SLKLLSLSNSRLN   79 (629)
Q Consensus        67 ~L~~L~Ls~n~l~   79 (629)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.01  E-value=0.082  Score=30.16  Aligned_cols=20  Identities=35%  Similarity=0.678  Sum_probs=9.0

Q ss_pred             CCcEEEccCCcCccCCCccc
Q 040607           92 HLQELHVDHNNLYGVPPWCL  111 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~~~~~~  111 (629)
                      +|++|+|++|++..++++.|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            44444444444444444333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.01  E-value=0.082  Score=30.16  Aligned_cols=20  Identities=35%  Similarity=0.678  Sum_probs=9.0

Q ss_pred             CCcEEEccCCcCccCCCccc
Q 040607           92 HLQELHVDHNNLYGVPPWCL  111 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~~~~~~  111 (629)
                      +|++|+|++|++..++++.|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            44444444444444444333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.95  E-value=0.081  Score=30.20  Aligned_cols=18  Identities=33%  Similarity=0.615  Sum_probs=8.5

Q ss_pred             CCCCeeecccccCCcccCc
Q 040607          115 TSLQVLNISSNQLTGNISS  133 (629)
Q Consensus       115 ~~L~~L~L~~n~l~~~i~~  133 (629)
                      ++|++|+|++|.++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34445555555444 4444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.95  E-value=0.081  Score=30.20  Aligned_cols=18  Identities=33%  Similarity=0.615  Sum_probs=8.5

Q ss_pred             CCCCeeecccccCCcccCc
Q 040607          115 TSLQVLNISSNQLTGNISS  133 (629)
Q Consensus       115 ~~L~~L~L~~n~l~~~i~~  133 (629)
                      ++|++|+|++|.++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34445555555444 4444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.53  E-value=0.078  Score=26.76  Aligned_cols=10  Identities=40%  Similarity=0.763  Sum_probs=3.1

Q ss_pred             CCeeeccccc
Q 040607          117 LQVLNISSNQ  126 (629)
Q Consensus       117 L~~L~L~~n~  126 (629)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.64  E-value=0.0077  Score=54.50  Aligned_cols=84  Identities=18%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             ccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEE
Q 040607          436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFS  515 (629)
Q Consensus       436 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  515 (629)
                      ....+.||++.|.+. .....|+-+..+..|+++.|.+.. .|..+.++..+..+++.+|..+ ..|.++...+++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            566777888888776 444566777888888888888864 4666788888888888888887 6788888888888888


Q ss_pred             cccCcCc
Q 040607          516 VAHNKLS  522 (629)
Q Consensus       516 l~~N~l~  522 (629)
                      +.+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888864

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.31  E-value=0.043  Score=48.90  Aligned_cols=82  Identities=20%  Similarity=0.173  Sum_probs=45.0

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCcccc-CCCCCCcEEEccCC-cCccCCCcccCCCCCCCee
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGL-CEFVHLQELHVDHN-NLYGVPPWCLGNMTSLQVL  120 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L  120 (629)
                      .++.+|=+++.|..+..+-+.+++.++.|.+.+|.-.++---+.+ .-.++|+.|++++| +|++-.-..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            355677777777766666677777777777766643211000001 12346666666655 3444443445556666666


Q ss_pred             eccc
Q 040607          121 NISS  124 (629)
Q Consensus       121 ~L~~  124 (629)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.85  E-value=0.12  Score=28.78  Aligned_cols=21  Identities=29%  Similarity=0.305  Sum_probs=11.1

Q ss_pred             CCCcEEEcCCCCceeecchhh
Q 040607           12 TNLENLTLDNSFFHVSLLQSI   32 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~   32 (629)
                      ++|++|++++|.+++....++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            566667777666655544433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.55  E-value=0.0091  Score=54.07  Aligned_cols=88  Identities=16%  Similarity=0.131  Sum_probs=55.1

Q ss_pred             hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCC
Q 040607           61 VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK  140 (629)
Q Consensus        61 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~  140 (629)
                      .+......+.||++.|.+. ..-. .|+-+..|..|+++.|.+... |..+.....++.+++..|..+ ..|. .++..+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP  111 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence            3455566677777777664 3332 466666666777777766543 345666666666777666666 6665 667777


Q ss_pred             CCCEEEccCcccc
Q 040607          141 SIQELKLSNNYFQ  153 (629)
Q Consensus       141 ~L~~L~L~~n~l~  153 (629)
                      .++++++.++.++
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            7777777666654

>TIGR00864 PCC polycystin cation channel protein

Probab=86.97  E-value=0.24  Score=61.01  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=36.2

Q ss_pred             ECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC-Cccccc
Q 040607          491 DLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP-DWVAQF  532 (629)
Q Consensus       491 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~  532 (629)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|.|. .||..+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~W   43 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRW   43 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHH
Confidence            689999998888899999999999999999999988 444444

Note: this model has been restricted to the amino half because for technical reasons.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.51  E-value=0.062  Score=47.89  Aligned_cols=82  Identities=16%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCC-CCCCCEEEccCcc-cccccCCcccCCCCCCcE
Q 040607           92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH-LKSIQELKLSNNY-FQIPISLGPLYNHSNLKI  169 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~-l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~  169 (629)
                      .++.++.++..|....-+-+.+++.++.|.+.+|.--+...-+.+++ .++|+.|++++|. || +.....+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHH
Confidence            46777778777776666667777777777777764322222112222 3678888888774 33 333344556666666


Q ss_pred             EECCC
Q 040607          170 FDSEN  174 (629)
Q Consensus       170 L~l~~  174 (629)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            66654

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=82.13  E-value=4.4  Score=41.33  Aligned_cols=61  Identities=16%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             CCCeeecccccCCcccCccccCC---CCCCCEEEccCcccccccC--CcccCCCCCCcEEECCCCcc
Q 040607          116 SLQVLNISSNQLTGNISSPPLKH---LKSIQELKLSNNYFQIPIS--LGPLYNHSNLKIFDSENNQI  177 (629)
Q Consensus       116 ~L~~L~L~~n~l~~~i~~~~l~~---l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~~  177 (629)
                      .+.+++++.|...+.+|. .+..   -..++.++.+...+.....  ...+..-+++...+++.|..
T Consensus       215 ~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             cccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence            466677777666555553 2211   1346666666655442111  12233445666666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	629
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-31
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-22
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-31
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-22
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-10
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 209/475 (44%), Gaps = 35/475 (7%)
Query: 87  LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
           L +   LQ L +  N L G     +   T L++LNISSNQ  G I  PPL  LKS+Q L 
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLP-LKSLQYLS 272
Query: 147 LSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESH-SLTPKFQLNSIILSHGSGV 203
           L+ N F  +IP  L    +   L   D   N  Y             +  ++  ++ SG 
Sbjct: 273 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSG-----IFQMPK 258
                L     LK ++LS     GE P  L+  +  L TL   +N  SG     + Q PK
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 259 HARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFS-LRYLV 315
           +  + L YL   +N F   IP  + N   L  L LS N L G IP  L  G  S LR L 
Sbjct: 391 NTLQEL-YLQ--NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLK 445
Query: 316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR 375
           L  N ++G I  + + +  L  L LD N   GEIP  LSNC     + LS+N L+G+IP+
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK---- 431
           W+G L     + + NN   G IP E      L  LD++     G++P+     S K    
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 432 --QGKPLNSM--SGLDLSCNKLTGEIP---LRIGNLTRIHT---LNVSHNKLTGLILSTF 481
              GK    +   G+   C+     +    +R   L R+ T    N++     G    TF
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
            N      LD+SYN L+G IP ++  +  L + ++ HN +SG  PD V      N
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 183/440 (41%), Gaps = 88/440 (20%)
Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
            L +L +S N     + V    +L  LD+S N     IP      C +L++L +S NK+ 
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLS 233
Query: 323 GHIFSKKIN-LTNLWRLQLDGNHFI----------------------GEIPESLSN-CNL 358
           G  FS+ I+  T L  L +  N F+                      GEIP+ LS  C+ 
Sbjct: 234 GD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNI 417
             GL LS NH  G +P + G+ S+ E + + +N+  G +PM+   ++  L++LD+S    
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 418 FGSLPSCFNPFSIKQ-------------------GKPLNSMSGLDLSCNKLTGEIPLRIG 458
            G LP      S                        P N++  L L  N  TG+IP  + 
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 459 NLTRIHTLNVSHNKLTGLILSTFSNL------------------------KQTESLDLSY 494
           N + + +L++S N L+G I S+  +L                        K  E+L L +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 495 NKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA-----TFNGSSYDGN-PFLSS 548
           N LTG+IP  L     L   S+++N+L+G+ P W+ +         + +S+ GN P    
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 549 SCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFAL 608
            C     SLI ++    +F  +    +    G +  N  +G+R+ Y     M    H A 
Sbjct: 533 DCR----SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 609 NNLATLIVIIRSHGVNQRQL 628
           N       ++   G+   QL
Sbjct: 589 N-------LLEFQGIRSEQL 601

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 209/475 (44%), Gaps = 35/475 (7%)
Query: 87  LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
           L +   LQ L +  N L G     +   T L++LNISSNQ  G I  PPL  LKS+Q L 
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLP-LKSLQYLS 275
Query: 147 LSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQTESH-SLTPKFQLNSIILSHGSGV 203
           L+ N F  +IP  L    +   L   D   N  Y             +  ++  ++ SG 
Sbjct: 276 LAENKFTGEIPDFLSGACD--TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSG-----IFQMPK 258
                L     LK ++LS     GE P  L+  +  L TL   +N  SG     + Q PK
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 259 HARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFS-LRYLV 315
           +  + L YL   +N F   IP  + N   L  L LS N L G IP  L  G  S LR L 
Sbjct: 394 NTLQEL-YLQ--NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLK 448
Query: 316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR 375
           L  N ++G I  + + +  L  L LD N   GEIP  LSNC     + LS+N L+G+IP+
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK---- 431
           W+G L     + + NN   G IP E      L  LD++     G++P+     S K    
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 432 --QGKPLNSM--SGLDLSCNKLTGEIP---LRIGNLTRIHT---LNVSHNKLTGLILSTF 481
              GK    +   G+   C+     +    +R   L R+ T    N++     G    TF
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFN 536
            N      LD+SYN L+G IP ++  +  L + ++ HN +SG  PD V      N
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 183/440 (41%), Gaps = 88/440 (20%)
Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
            L +L +S N     + V    +L  LD+S N     IP      C +L++L +S NK+ 
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLS 236
Query: 323 GHIFSKKIN-LTNLWRLQLDGNHFI----------------------GEIPESLSN-CNL 358
           G  FS+ I+  T L  L +  N F+                      GEIP+ LS  C+ 
Sbjct: 237 GD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNI 417
             GL LS NH  G +P + G+ S+ E + + +N+  G +PM+   ++  L++LD+S    
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 418 FGSLPSCFNPFSIKQ-------------------GKPLNSMSGLDLSCNKLTGEIPLRIG 458
            G LP      S                        P N++  L L  N  TG+IP  + 
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 459 NLTRIHTLNVSHNKLTGLILSTFSNL------------------------KQTESLDLSY 494
           N + + +L++S N L+G I S+  +L                        K  E+L L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 495 NKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA-----TFNGSSYDGN-PFLSS 548
           N LTG+IP  L     L   S+++N+L+G+ P W+ +         + +S+ GN P    
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 549 SCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVNPYSGRRWFYFVESWMTTCYHFAL 608
            C     SLI ++    +F  +    +    G +  N  +G+R+ Y     M    H A 
Sbjct: 536 DCR----SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 609 NNLATLIVIIRSHGVNQRQL 628
           N       ++   G+   QL
Sbjct: 592 N-------LLEFQGIRSEQL 604

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 32/230 (13%)
Query: 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC 402
           N+ +G IP +++       LY++  ++SG IP +L  +     +    N L G +P    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 403 QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462
            L  L  +      I G++P  +  FS    K   SM+   +S N+LTG+IP    NL  
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS----KLFTSMT---ISRNRLTGKIPPTFANL-N 198
Query: 463 IHTLNVSHNKLTGLILSTFSNLKQTE-----------------------SLDLSYNKLTG 499
           +  +++S N L G     F + K T+                        LDL  N++ G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 500 KIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSS 549
            +P  L +L  L   +V+ N L G+ P        F+ S+Y  N  L  S
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L L+  HL G +P  +  L++ + +++  NH +     + CQ++      ++   I G++
Sbjct: 280 LDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD-----QLCQISAANFPSLTHLYIRGNV 333
Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE--IPLRIGNLTRIHTLNVSHNKLTGLILS 479
                   +   + L ++  LDLS N +       L++ NL+ + TLN+SHN+  GL   
Sbjct: 334 KKLH--LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQ 391
Query: 480 TFSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHNKLSGKTPDWVAQFATFNGS 538
            F    Q E LDL++ +L    P    + L+ L V ++ +  L       +A        
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHL 451
Query: 539 SYDGNPFLSSSCNGEDDSLIDMNNFYIIFAVSYVIVILGIDGVLYVN 585
           +  GN F       +D ++   N    + ++   ++IL   G+L ++
Sbjct: 452 NLKGNHF-------QDGTITKTNLLQTVGSLE--VLILSSCGLLSID 489

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 89  EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS 148
           + V+L EL +D N L  +PP    ++T L  L++  N+L  ++       L S++EL+L 
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165
Query: 149 NNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           NN  +  +  G     + LK    +NNQ+
Sbjct: 166 NNQLK-RVPEGAFDKLTELKTLKLDNNQL 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	629
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-80
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	9e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  323 bits (830), Expect = e-101
 Identities = 139/514 (27%), Positives = 226/514 (43%), Gaps = 46/514 (8%)

Query: 64  SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123
            + SL+ LSL+ ++  G I D        L  L +  N+ YG  P   G+ + L+ L +S
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 124 SNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQ- 180
           SN  +G +    L  ++ ++ L LS N F  ++P SL  L   ++L   D  +N      
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPI 384

Query: 181 TESHSLTPKFQLNSIILS----HGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSEN 236
             +    PK  L  + L      G     P  L +  +L  ++LS   L G  P+ L  +
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGK---IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-S 440

Query: 237 NTKLQTLVQVNNYLSG-----IFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVL 289
            +KL+ L    N L G     +  +       L  L +  N     IP  + N  +L+ +
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKT-----LETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349
            LS NRL G+IP+ +     +L  L LSNN   G+I ++  +  +L  L L+ N F G I
Sbjct: 496 SLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN--HLEGPIPMEFCQLNFL 407
           P ++   +      ++ N ++GK   ++ N  + ++     N    +G    +  +L+  
Sbjct: 555 PAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 408 QILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467
              +I+ +   G     F            SM  LD+S N L+G IP  IG++  +  LN
Sbjct: 611 NPCNITSRVYGGHTSPTF--------DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
           + HN ++G I     +L+    LDLS NKL G+IP  +  L  L    +++N LSG  P+
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

Query: 528 WVAQFATFNGSSYDGNPFL-----SSSCNGEDDS 556
            + QF TF  + +  NP L             D 
Sbjct: 723 -MGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  296 bits (759), Expect = 1e-90
 Identities = 143/485 (29%), Positives = 211/485 (43%), Gaps = 34/485 (7%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGV--PPWCLGNMTSLQV 119
           + S+T L+ L LSNS +NG++   G      L  L +  N+L G       LG+ + L+ 
Sbjct: 73  LLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQI 177
           LN+SSN L           L S++ L LS N       +          LK      N+I
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 178 YAQTESHSLTPKFQLNSIILSHG--SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE 235
               +         L  + +S    S    P FL     L+H+++S   L G+F   +S 
Sbjct: 191 SGDVDVSRCV---NLEFLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRAIS- 244

Query: 236 NNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP---VGNMKSLSVLDLS 292
             T+L+ L   +N   G   +P    + L YL +++N F   IP    G   +L+ LDLS
Sbjct: 245 TCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI-NLTNLWRLQLDGNHFIGEIPE 351
            N   G +P      C  L  L LS+N   G +    +  +  L  L L  N F GE+PE
Sbjct: 303 GNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

Query: 352 SLSNC--NLFGGLYLSDNHLSGKIPRWLGNLSVS--EDVIMPNNHLEGPIPMEFCQLNFL 407
           SL+N   +L   L LS N+ SG I   L     +  +++ + NN   G IP      + L
Sbjct: 362 SLTNLSASLL-TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420

Query: 408 QILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467
             L +S   + G++PS     S         +  L L  N L GEIP  +  +  + TL 
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLS--------KLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
           +  N LTG I S  SN      + LS N+LTG+IP  +  L  LA+  +++N  SG  P 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 528 WVAQF 532
            +   
Sbjct: 533 ELGDC 537

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  287 bits (736), Expect = 3e-87
 Identities = 137/553 (24%), Positives = 220/553 (39%), Gaps = 93/553 (16%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS 64
           L  L + + L+ L + ++        S                                 
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSG-----------------------------GLK 149

Query: 65  MTSLKLLSLSNSRLNGTILDQGLC--EFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
           + SL++L LS + ++G  +   +       L+ L +  N + G     +    +L+ L++
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDV 207

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIYAQ 180
           SSN  +  I    L    ++Q L +S N        ++      + LK+ +  +NQ    
Sbjct: 208 SSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTC---TELKLLNISSNQF--- 259

Query: 181 TESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240
                                G   P        L++++L+     GE P++LS     L
Sbjct: 260 --------------------VG-PIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 241 QTLVQVNNYLSG-----IFQMPKHARRHLTYLDVSDNFFQVHIPV---GNMKSLSVLDLS 292
             L    N+  G                L  L +S N F   +P+     M+ L VLDLS
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSL-----LESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351

Query: 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSK--KINLTNLWRLQLDGNHFIGEIP 350
            N   G++PE L     SL  L LS+N   G I     +     L  L L  N F G+IP
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 351 ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQIL 410
            +LSNC+    L+LS N+LSG IP  LG+LS   D+ +  N LEG IP E   +  L+ L
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 411 DISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSH 470
            +   ++ G +PS              +++ + LS N+LTGEIP  IG L  +  L +S+
Sbjct: 472 ILDFNDLTGEIPSGL--------SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 471 NKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVA 530
           N  +G I +   + +    LDL+ N   G IP  + + +      +A N ++GK   ++ 
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIK 579

Query: 531 QFATFNGSSYDGN 543
                      GN
Sbjct: 580 NDGMKKECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  283 bits (727), Expect = 6e-86
 Identities = 129/518 (24%), Positives = 213/518 (41%), Gaps = 55/518 (10%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCL---GNMTSLQ 118
           + S + LK L++S++ L+      G  +   L+ L +  N++ G              L+
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPI-SLGPLYNHSNLKIFDSENNQI 177
            L IS N+++G++    +    +++ L +S+N F   I  LG   + S L+  D   N++
Sbjct: 182 HLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPFLG---DCSALQHLDISGNKL 235

Query: 178 YAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN 237
                                  SG  F + +    +LK +N+S     G  P       
Sbjct: 236 -----------------------SG-DFSRAISTCTELKLLNISSNQFVGPIP---PLPL 268

Query: 238 TKLQTLVQVNNYLSGIFQMPK---HARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLS 292
             LQ L    N  +G  ++P     A   LT LD+S N F   +P   G+   L  L LS
Sbjct: 269 KSLQYLSLAENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLT-NLWRLQLDGNHFIGEIPE 351
            N   G++P    +    L+ L LS N+  G +     NL+ +L  L L  N+F G I  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 352 SLSNCNLFG--GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQI 409
           +L          LYL +N  +GKIP  L N S    + +  N+L G IP     L+ L+ 
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 410 LDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS 469
           L +    + G +P             + ++  L L  N LTGEIP  + N T ++ +++S
Sbjct: 447 LKLWLNMLEGEIPQEL--------MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 470 HNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV 529
           +N+LTG I      L+    L LS N  +G IP +L +  +L    +  N  +G  P  +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 530 AQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIF 567
            + +    +++          N             + F
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  267 bits (686), Expect = 4e-80
 Identities = 116/469 (24%), Positives = 194/469 (41%), Gaps = 51/469 (10%)

Query: 71  LSLSNSRLNGTI--LDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT 128
           + LS+  LN     +   L     L+ L + ++++ G          SL  L++S N L+
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS 113

Query: 129 GNISSPP-LKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187
           G +++   L     ++ L +S+N    P  +      ++L++ D   N I     S +  
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-----SGANV 168

Query: 188 PKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVN 247
             + L+                     LKH+ +S   + G+           L+ L   +
Sbjct: 169 VGWVLSDGCGE----------------LKHLAISGNKISGDVD---VSRCVNLEFLDVSS 209

Query: 248 NYLSG----IFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIP 301
           N  S     +          L +LD+S N         +     L +L++S N+ +G IP
Sbjct: 210 NNFSTGIPFLGDCSA-----LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHI-FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG 360
                   SL+YL L+ NK  G I          L  L L GNHF G +P    +C+L  
Sbjct: 265 PLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 361 GLYLSDNHLSGKIPR-WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNF-LQILDISKKNIF 418
            L LS N+ SG++P   L  +   + + +  N   G +P     L+  L  LD+S  N  
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL 478
           G +             P N++  L L  N  TG+IP  + N + + +L++S N L+G I 
Sbjct: 382 GPILPNLCQN------PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
           S+  +L +   L L  N L G+IP +L+ +  L    +  N L+G+ P 
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  247 bits (632), Expect = 2e-72
 Identities = 122/449 (27%), Positives = 200/449 (44%), Gaps = 48/449 (10%)

Query: 92  HLQELHVDHNNLYGVP---PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS 148
            +  + +    L          L ++T L+ L +S++ + G++     K   S+  L LS
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLS 108

Query: 149 NNYFQIPISLGP-LYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPK 207
            N    P++    L + S LK  +  +N +        ++   +LNS             
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---DFPGKVSGGLKLNS------------- 152

Query: 208 FLYHQHDLKHVNLSHINLRGEFPNWLSENN--TKLQTLVQVNNYLSGIFQMPKHARRHLT 265
                  L+ ++LS  ++ G        ++   +L+ L    N +SG   +      +L 
Sbjct: 153 -------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLE 203

Query: 266 YLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGH 324
           +LDVS N F   IP +G+  +L  LD+S N+L G     ++  C  L+ L +S+N+  G 
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGP 262

Query: 325 IFSKKINLTNLWRLQLDGNHFIGEIPESLS-NCNLFGGLYLSDNHLSGKIPRWLGNLSVS 383
           I    + L +L  L L  N F GEIP+ LS  C+   GL LS NH  G +P + G+ S+ 
Sbjct: 263 IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 384 EDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL 442
           E + + +N+  G +PM+   ++  L++LD+S     G LP               S+  L
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-------TNLSASLLTL 373

Query: 443 DLSCNKLTGEIPLRIGN--LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500
           DLS N  +G I   +       +  L + +N  TG I  T SN  +  SL LS+N L+G 
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 501 IPPQLVELNALAVFSVAHNKLSGKTPDWV 529
           IP  L  L+ L    +  N L G+ P  +
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 459 NLTRIHTLNVSHNKLT---GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFS 515
              ++ ++++S   L      + S+  +L   ESL LS + + G +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 516 VAHNKLSGKTPDW 528
           ++ N LSG     
Sbjct: 107 LSRNSLSGPVTTL 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (538), Expect = 8e-60
 Identities = 100/527 (18%), Positives = 186/527 (35%), Gaps = 35/527 (6%)

Query: 54  LDKNFLQVIK-----SMTSLKLLSLSNSRLNGTILDQ-GLCEFVHLQELHVDHNNLYGVP 107
           L  N L   K      + +L+ L LSN+++     ++  +     L++L +  N +    
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPPLK--HLKSIQELKLSNNYFQ--IPISLGPLYN 163
           P C   +  L  L +++ QL  +++          SI+ L LSN+        +   L  
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-K 246

Query: 164 HSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP----------KFLYHQH 213
            +NL + D   N +     + S     QL    L + +               ++L  + 
Sbjct: 247 WTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF 273
                ++S  +L              L+ L   +N + GI         +L YL +S++F
Sbjct: 306 SFTKQSISLASLPKIDDFSFQ-WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 274 FQVHIPVGN------MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFS 327
             +               L +L+L+KN++     +  +     L  L L  N++   +  
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTG 423

Query: 328 KKI-NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG--KIPRWLGNLSVSE 384
           ++   L N++ + L  N ++     S +       L L    L      P     L    
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 385 DVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDL 444
            + + NN++          L  L+ILD+   N+            I   K L+ +  L+L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ 504
             N           +L  +  +++  N L  L  S F+N    +SL+L  N +T      
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 505 L-VELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSC 550
                  L    +  N     T + +A F  +   ++   P LSS  
Sbjct: 604 FGPAFRNLTELDMRFNPFDC-TCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (451), Expect = 8e-48
 Identities = 96/492 (19%), Positives = 161/492 (32%), Gaps = 77/492 (15%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L  N L  +        T+L  L L ++ +   I +    +  +L  L + HN L     
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSP-PLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
                + +LQ L +S+N++    S    +    S+++L+LS+N  +     G  +    L
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRL 197

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRG 227
                 N Q+       SLT K  L     S                +++++LS+  L  
Sbjct: 198 FGLFLNNVQL-----GPSLTEKLCLELANTS----------------IRNLSLSNSQLST 236

Query: 228 EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV--GNMKS 285
                                              +LT LD+S N   V        +  
Sbjct: 237 TSNTTFLGLKWT-----------------------NLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI---------NLTNLW 336
           L    L  N +       L  G F++RYL L  +  K  I    +          L  L 
Sbjct: 274 LEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK--IPRWLGNLSVS--EDVIMPNNH 392
            L ++ N   G      +       L LS++  S +        +L+ S    + +  N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
           +       F  L  L++LD+    I   L      +       L ++  + LS NK    
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWR-----GLENIFEIYLSYNKYLQL 445

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGL--ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNA 510
                  +  +  L +    L  +    S F  L+    LDLS N +       L  L  
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 511 LAVFSVAHNKLS 522
           L +  + HN L+
Sbjct: 506 LEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  166 bits (423), Expect = 5e-44
 Identities = 79/474 (16%), Positives = 156/474 (32%), Gaps = 68/474 (14%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
            S ++   S+ +L  T +   L    ++  L++ HN L  +P       + L  L++  N
Sbjct: 4   VSHEVADCSHLKL--TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
            ++  +     + L  ++ L L +N              +NL      +N I        
Sbjct: 60  TISK-LEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNSI-------- 109

Query: 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ 245
                    I                Q +L  ++LSH  L              LQ L+ 
Sbjct: 110 -------QKIK---------NNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLL 152

Query: 246 VNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLA 305
            NN +  +                          +    SL  L+LS N++    P    
Sbjct: 153 SNNKIQAL----------------KSEELD----IFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 306 MGCFSLRYLVLSNNKMKGHI---FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG-- 360
                L  L L+N ++   +      ++  T++  L L  +        +          
Sbjct: 193 -AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 361 GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS 420
            L LS N+L+         L   E   +  N+++         L  ++ L++ +     S
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 421 LPSC----FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL 476
           +        + FS +    L  +  L++  N + G        L  +  L++S++  +  
Sbjct: 312 ISLASLPKIDDFSFQW---LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 477 ILS--TFSNLKQT--ESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
            L+  TF +L  +    L+L+ NK++         L  L V  +  N++  +  
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 17/169 (10%)

Query: 362 LYLSDNHLS---GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF 418
              S   L+     +P  +  L+++      +N L       F + + L  LD+    I 
Sbjct: 9   ADCSHLKLTQVPDDLPTNITVLNLT------HNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL 478
              P             L  +  L+L  N+L+          T +  L++  N +  +  
Sbjct: 63  KLEPELCQK--------LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
           + F   K   +LDLS+N L+       V+L  L    +++NK+     +
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 5e-13
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 11/142 (7%)

Query: 390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449
           +  L   +P +      + +L+++   +     + F           + ++ LD+  N +
Sbjct: 13  HLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANF--------TRYSQLTSLDVGFNTI 61

Query: 450 TGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN 509
           +   P     L  +  LN+ HN+L+ L   TF+       L L  N +        V+  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 510 ALAVFSVAHNKLSGKTPDWVAQ 531
            L    ++HN LS        Q
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQ 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 55/147 (37%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMT 66
            L  L++L  L L++                                   N    I    
Sbjct: 531 FLKGLSHLHILNLES-----------------------------------NGFDEIPVEV 555

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126
              L  L                    + + +  NNL  +P     N  SL+ LN+  N 
Sbjct: 556 FKDLFEL--------------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 127 LTGNISSPPLKHLKSIQELKLSNNYFQ 153
           +T           +++ EL +  N F 
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  197 bits (504), Expect = 2e-58
 Identities = 73/309 (23%), Positives = 114/309 (36%), Gaps = 42/309 (13%)

Query: 247 NNYLSGIFQMPKHARRHLTYLDVSDNFF--QVHIP--VGNMKSLSVLDLSK-NRLIGKIP 301
           N    G+          +  LD+S         IP  + N+  L+ L +   N L+G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361
             +A     L YL +++  + G I      +  L  L    N   G +P S+S+     G
Sbjct: 95  PAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 362 LYLSDNHLSGKIPRWLGNL-SVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS 420
           +    N +SG IP   G+   +   + +  N L G IP  F  LN               
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF------------ 201

Query: 421 LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST 480
                                +DLS N L G+  +  G+      ++++ N L   +   
Sbjct: 202 ---------------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK 239

Query: 481 FSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSY 540
               K    LDL  N++ G +P  L +L  L   +V+ N L G+ P        F+ S+Y
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY 298

Query: 541 DGNPFLSSS 549
             N  L  S
Sbjct: 299 ANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (376), Expect = 3e-40
 Identities = 74/416 (17%), Positives = 124/416 (29%), Gaps = 144/416 (34%)

Query: 96  LHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPP-LKHLKSIQELKLSN-NYF- 152
               +    GV          +  L++S   L      P  L +L  +  L +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 153 -QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYH 211
             IP ++  L                                                  
Sbjct: 91  GPIPPAIAKLTQ------------------------------------------------ 102

Query: 212 QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSD 271
              L ++ ++H N+ G  P++LS     L TL    N LSG                   
Sbjct: 103 ---LHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSG------------------- 139

Query: 272 NFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKK 329
                 +P  + ++ +L  +    NR+ G IP+                           
Sbjct: 140 -----TLPPSISSLPNLVGITFDGNRISGAIPDSYG------------------------ 170

Query: 330 INLTNLWR-LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIM 388
            + + L+  + +  N   G+IP + +N NL   + LS N L G      G+   ++ + +
Sbjct: 171 -SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448
             N L   +  +      L                                  LDL  N+
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNG--------------------------------LDLRNNR 255

Query: 449 LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK-LTGKIPP 503
           + G +P  +  L  +H+LNVS N L G I     NL++ +    + NK L G   P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (349), Expect = 1e-36
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 13/215 (6%)

Query: 316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE--IPESLSNCNLFGGLYLSD-NHLSGK 372
             N    G +         +  L L G +      IP SL+N      LY+   N+L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ 432
           IP  +  L+    + + + ++ G IP    Q+  L  LD S   + G+LP          
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI------- 145

Query: 433 GKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHT-LNVSHNKLTGLILSTFSNLKQTESLD 491
              L ++ G+    N+++G IP   G+ +++ T + +S N+LTG I  TF+NL     +D
Sbjct: 146 SS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VD 203

Query: 492 LSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
           LS N L G                +A N L+    
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (325), Expect = 3e-33
 Identities = 67/346 (19%), Positives = 108/346 (31%), Gaps = 88/346 (25%)

Query: 64  SMTSLKLLSLSNSRLNGTI-LDQGLCEFVHLQELHV-DHNNLYGVPPWCLGNMTSLQVLN 121
               +  L LS   L     +   L    +L  L++   NNL G  P  +  +T L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 122 ISSNQLTGNISSPP-LKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQIY 178
           I+   ++G I  P  L  +K++  L  S N     +P S+  L N               
Sbjct: 108 ITHTNVSGAI--PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN--------------- 150

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
                                               L  +      + G  P+     + 
Sbjct: 151 ------------------------------------LVGITFDGNRISGAIPDSYGSFSK 174

Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRL 296
              ++    N L+G                         IP    N+ +L+ +DLS+N L
Sbjct: 175 LFTSMTISRNRLTG------------------------KIPPTFANL-NLAFVDLSRNML 209

Query: 297 IGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNC 356
            G           + + + L+ N +   +  K     NL  L L  N   G +P+ L+  
Sbjct: 210 EGDASVLFGS-DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 357 NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC 402
                L +S N+L G+IP+              N  L G  P+  C
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG-SPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (290), Expect = 1e-28
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 16/188 (8%)

Query: 348 EIPESLSNCNLF----GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG--PIPMEF 401
           +I + L N              +    G +           ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 402 CQLNFLQILDISKKN-IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNL 460
             L +L  L I   N + G +P           K L  +  L ++   ++G IP  +  +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAI-------AK-LTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVF-SVAHN 519
             + TL+ S+N L+G +  + S+L     +    N+++G IP      + L    +++ N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 520 KLSGKTPD 527
           +L+GK P 
Sbjct: 185 RLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (279), Expect = 5e-27
 Identities = 62/305 (20%), Positives = 101/305 (33%), Gaps = 74/305 (24%)

Query: 62  IKSMTSLKLLSLSNS-RLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
           + ++  L  L +     L G I    + +   L  L++ H N+ G  P  L  + +L  L
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 121 NISSNQLTGNISSPP-LKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFDSENNQI 177
           + S N L+G +  PP +  L ++  +    N     IP S G   + S L          
Sbjct: 131 DFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYG---SFSKL---------- 175

Query: 178 YAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN 237
                                                   + +S   L G+ P   +  N
Sbjct: 176 -------------------------------------FTSMTISRNRLTGKIPPTFA--N 196

Query: 238 TKLQTLVQVNNYLSG-----IFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDL 291
             L  +    N L G              ++   + ++ N     +  VG  K+L+ LDL
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSD-----KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPE 351
             NR+ G +P+ L      L  L +S N + G I  +  NL          N  +   P 
Sbjct: 252 RNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP- 308

Query: 352 SLSNC 356
            L  C
Sbjct: 309 -LPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.2 bits (178), Expect = 6e-14
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 29/179 (16%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFL-----QV 61
            L  +  L  L    +    +L  SI+               + G   D N +       
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSIS-----------SLPNLVGITFDGNRISGAIPDS 168

Query: 62  IKSMTSL-KLLSLSNSRLNGTILDQ-GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV 119
             S + L   +++S +RL G I          +L  + +  N L G      G+  + Q 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHSNLKIFD-SENN 175
           ++++ N L  ++    +   K++  L L NN     +P  L  L     L   + S NN
Sbjct: 226 IHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQL---KFLHSLNVSFNN 279

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  194 bits (496), Expect = 2e-54
 Identities = 80/483 (16%), Positives = 167/483 (34%), Gaps = 45/483 (9%)

Query: 54  LDKNFLQ-----VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
             +  L       I  + +LK L+++++ +    L +      +L+ L +  N +  +  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 109 WCLGNMTSLQV----LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNH 164
             L  +  + +    L++S N +   I     K +  + +L L NN+  + +    +   
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 165 SNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN 224
           + L++      +                N   L                 ++   L++++
Sbjct: 225 AGLEVHRLVLGEF--------------RNEGNLEKFDKSALEGL--CNLTIEEFRLAYLD 268

Query: 225 LRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMK 284
              +    L    T + +   V+  +  +            +L++ +  F    P   +K
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTLKLK 325

Query: 285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM--KGHIFSKKINLTNLWRLQLDG 342
           SL  L  + N+      E   +   SL +L LS N +  KG         T+L  L L  
Sbjct: 326 SLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRW-LGNLSVSEDVIMPNNHLEGPIPMEF 401
           N  I  +  +         L    ++L          +L     + + + H        F
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 402 CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLT 461
             L+ L++L ++  +   +               L +++ LDLS  +L    P    +L+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL-NALAVFSVAHNK 520
            +  LN+SHN    L    +  L   + LD S N +      +L    ++LA  ++  N 
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 521 LSG 523
            + 
Sbjct: 555 FAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  194 bits (495), Expect = 2e-54
 Identities = 88/490 (17%), Positives = 168/490 (34%), Gaps = 35/490 (7%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
            +S++ L  L L+ + +              LQ+L     NL  +  + +G++ +L+ LN
Sbjct: 72  YQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPISLGPLYN-HSNLKIFDSENNQIY 178
           ++ N +          +L +++ L LS+N  Q      L  L+         D   N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM- 189

Query: 179 AQTESHSLTPKFQLNSIILSH--GSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSEN 236
                     + +L+ + L +   S       +     L+   L     R E      + 
Sbjct: 190 -NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 237 NT--KLQTLVQVNNYLSGIFQMPKHAR------RHLTYLDVSDNFFQVHIPVGNMKSLSV 288
           +    L  L      L+ +               +++   +     +             
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH--FI 346
           L+L   +       +L     SL+ L  ++NK  G     +++L +L  L L  N   F 
Sbjct: 309 LELVNCKFGQFPTLKLK----SLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 347 GEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLN 405
           G   +S         L LS N +   +      L   E +   +++L+       F  L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIH 464
            L  LDIS  +   +    FN         L+S+  L ++ N         I   L  + 
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 465 TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK 524
            L++S  +L  L  + F++L   + L++S+N            LN+L V   + N +   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 525 TPDWVAQFAT 534
               +  F +
Sbjct: 534 KKQELQHFPS 543

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 1e-41
 Identities = 82/496 (16%), Positives = 159/496 (32%), Gaps = 71/496 (14%)

Query: 54  LDKNFLQVIKS-MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLG 112
           ++ NF ++  +   S K L LS + L   +       F  LQ L +    +  +      
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172
           +++ L  L ++ N +   ++      L S+Q+L           +  P+ +   LK  + 
Sbjct: 74  SLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNV 131

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
            +N I                            P++  +  +L+H++LS   ++  +   
Sbjct: 132 AHNLI-----------------------QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 233 LSENNTKLQTLVQV----NNYLSGI----FQMPKHARRHLTYLDVSDNFFQVHIP---VG 281
           L     ++  L        N ++ I    F+  +     L  L + +NF  +++    + 
Sbjct: 169 LR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-----LHKLTLRNNFDSLNVMKTCIQ 222

Query: 282 NMKSLSVLDLSKNRL--IGKIPERLAMGCFSLRYLVLSNNKMK------GHIFSKKINLT 333
            +  L V  L        G + +        L  L +   ++         I      LT
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL 393
           N+    L          +  S    +  L L +          L +L             
Sbjct: 283 NVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSN 335

Query: 394 EGPIPMEFCQLNFLQILDIS--KKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG 451
           +G        L  L+ LD+S    +  G                  S+  LDLS N +  
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD--------FGTTSLKYLDLSFNGVIT 387

Query: 452 EIPLRIGNLTRIHTLNVSHNKLTGLI-LSTFSNLKQTESLDLSYNKLTGKIPPQLVELNA 510
            +      L ++  L+  H+ L  +   S F +L+    LD+S+             L++
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 511 LAVFSVAHNKLSGKTP 526
           L V  +A N       
Sbjct: 447 LEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  148 bits (376), Expect = 3e-38
 Identities = 79/470 (16%), Positives = 154/470 (32%), Gaps = 48/470 (10%)

Query: 60  QVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQ----ELHVDHNNLYGVPPWCLGNMT 115
           +   ++T+L+ L LS++++   I    L     +      L +  N +  + P     + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 116 SLQVLNISSNQLTGNISSPPLKHLKS--IQELKLSNNYFQIPISLGPLYNHSNLKIFDSE 173
            L  L + +N  + N+    ++ L    +  L L     +  +          L     E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 174 NNQIYAQTESHSLTPKF-----QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGE 228
             ++                   ++S  L   +      F Y+    +H+ L +    G+
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCKF-GQ 318

Query: 229 FPNWLSENNTKLQTLVQVNNYLSGIFQMPK---------------------HARRHLTYL 267
           FP    ++  +L               +P                           L YL
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 268 DVSDNFFQVHIPV-GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
           D+S N           ++ L  LD   + L       + +   +L YL +S+   +    
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 327 SKKINLTNLWRLQLDGNHFIGEI-PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED 385
                L++L  L++ GN F     P+  +       L LS   L    P    +LS  + 
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS 445
           + M +N+        +  LN LQ+LD S  +I  S       F        +S++ L+L+
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-------PSSLAFLNLT 551

Query: 446 CNKLTGEIPLR--IGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS 493
            N        +  +  +     L V   ++     S    +    SL+++
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL-SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (292), Expect = 2e-27
 Identities = 78/438 (17%), Positives = 138/438 (31%), Gaps = 67/438 (15%)

Query: 110 CLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKI 169
           C+  + ++    +  N         P     S + L LS N  +   S    ++   L++
Sbjct: 3   CVEVVPNITYQCMELN-----FYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQV 56

Query: 170 FDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEF 229
            D    +I                +I                   L  + L+   ++   
Sbjct: 57  LDLSRCEI---------------QTIE---------DGAYQSLSHLSTLILTGNPIQSLA 92

Query: 230 PNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-VHIP--VGNMKSL 286
               S   + LQ LV V   L+ +   P    + L  L+V+ N  Q   +P    N+ +L
Sbjct: 93  LGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 287 SVLDLSKNRLIGKIPERLAMGCFSLRY----LVLSNNKMKGHIFSKKINLTNLWRLQLDG 342
             LDLS N++       L      +      L LS N M   I         L +L L  
Sbjct: 152 EHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRN 209

Query: 343 NHFIGEIPESLSNC-------NLFGGLYLSDNHLSGKIP---RWLGNLSVSEDVIMPNNH 392
           N     + ++            L  G + ++ +L          L NL++ E  +   ++
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
               I   F  L  +    +    I       +                L+L   K    
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----------NFGWQHLELVNCKFGQF 319

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT--GKIPPQLVELNA 510
             L++ +L R   L  + NK       +  +L   E LDLS N L+  G          +
Sbjct: 320 PTLKLKSLKR---LTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 511 LAVFSVAHNKLSGKTPDW 528
           L    ++ N +   + ++
Sbjct: 375 LKYLDLSFNGVITMSSNF 392

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.9 bits (239), Expect = 7e-21
 Identities = 52/315 (16%), Positives = 91/315 (28%), Gaps = 26/315 (8%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGP--------------WMVQCFIGFRAMDGTA 53
           L  L NL       ++    L   I +F                  V+ F          
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 54  LDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLY--GVPPWCL 111
           L         ++    L  L+ +   G        +   L+ L +  N L   G      
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 112 GNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFD 171
              TSL+ L++S N +     S     L+ ++ L   ++  +         +  NL   D
Sbjct: 370 FGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 172 SENNQIYAQTESHSLTPKFQLNSIILSH--GSGVTFPKFLYHQHDLKHVNLSHINLRGEF 229
             +        +        L  + ++         P       +L  ++LS   L    
Sbjct: 428 ISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 230 PNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP---VGNMKSL 286
           P   + + + LQ L   +N    +   P      L  LD S N               SL
Sbjct: 487 PTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 287 SVLDLSKNRLIGKIP 301
           + L+L++N       
Sbjct: 546 AFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 38/245 (15%), Positives = 75/245 (30%), Gaps = 42/245 (17%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-- 62
                +L +LE L L  +        S + FG   ++            L  N +  +  
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD---------LSFNGVITMSS 390

Query: 63  --KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
               +  L+ L   +S L             +L  L + H +           ++SL+VL
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPISLGPLYNHSNLKIFDSENNQIY 178
            ++ N    N        L+++  L LS    +   P +   L   S+L++ +  +N   
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---SSLQVLNMSHNNF- 506

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
                          S+                 + L+ ++ S  ++       L    +
Sbjct: 507 --------------FSLD---------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 239 KLQTL 243
            L  L
Sbjct: 544 SLAFL 548

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  190 bits (484), Expect = 1e-52
 Identities = 77/562 (13%), Positives = 156/562 (27%), Gaps = 83/562 (14%)

Query: 7   ELHNLTNLENLTL-DNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSM 65
            +  LT LE L L  +       L                 +        K F+      
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISA---NMSDEQKQKMRMHYQKTFVDYDPRE 156

Query: 66  TSLKLLSLSNSRLNGTI-LDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
               L+    +       + +     +   ++    NN+  V    +  +T L+   + +
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGN 215

Query: 125 NQLTGNISSPPLKH------------------LKSIQELKLSNNYF--QIPISLGPLYNH 164
           +           ++                  LK + ++++ N     ++P  L  L   
Sbjct: 216 SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--- 272

Query: 165 SNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN 224
             +++ +   N+                 S                 +  ++ + + + N
Sbjct: 273 PEMQLINVACNR---------------GISGEQLKDDWQALADAPVGEK-IQIIYIGYNN 316

Query: 225 LR-GEFPNWLSENNTKLQTLVQVNNYLSG----IFQMPKHARRHLTYLDVSDNFFQVHIP 279
           L+       L     KL  L  + N L G         K     L  L+++ N     IP
Sbjct: 317 LKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFGSEIK-----LASLNLAYNQIT-EIP 369

Query: 280 ---VGNMKSLSVLDLSKNRLIGKIPERLAMG-CFSLRYLVLSNNKMKG-------HIFSK 328
               G  + +  L  + N+L   IP          +  +  S N++          +   
Sbjct: 370 ANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 329 KINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG-------KIPRWLGNLS 381
                N+  + L  N       E  S  +    + L  N L+               N  
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 382 VSEDVIMPNNHLEG-PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMS 440
           +   + +  N L           L +L  +D+S  N F   P+     +    K     +
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQP--LNSSTLKGFGIRN 545

Query: 441 GLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500
             D   N+   E P  I     +  L +  N +  +      N+     LD+  N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISI 602

Query: 501 IPPQLVELNALAVFSVAHNKLS 522
               +       ++ + ++K  
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (447), Expect = 2e-47
 Identities = 71/486 (14%), Positives = 156/486 (32%), Gaps = 63/486 (12%)

Query: 64  SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVP----PWCLGNMTSLQV 119
           S   +  LSL     +G + D  + +   L+ L +  +          P  +    S + 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 120 LNISSNQLTGNI-SSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
                           P +    + +  ++++  Q  I         + +I    NN   
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN--- 194

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
                        +  +           K +     L+   + +     E        N 
Sbjct: 195 -------------ITFV----------SKAVMRLTKLRQFYMGNSPFVAENICEAW-ENE 230

Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRL 296
             +   Q          +       LT ++V +      +P  +  +  + +++++ NR 
Sbjct: 231 NSEYAQQYKTEDLKWDNLKD-----LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 297 IGKIPERLAMG-------CFSLRYLVLSNNKMK-GHIFSKKINLTNLWRLQLDGNHFIGE 348
           I     +              ++ + +  N +K   + +    +  L  L+   N   G+
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 349 IPESLSNC-NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG-PIPMEFCQLNF 406
           +P    +   L   L L+ N ++     + G     E++   +N L+  P   +   ++ 
Sbjct: 346 LPA-FGSEIKLA-SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 407 LQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTL 466
           +  +D S   I       F+P      K   ++S ++LS N+++          + + ++
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 467 NVSHNKLTGL-------ILSTFSNLKQTESLDLSYNKLTGKIPPQLV--ELNALAVFSVA 517
           N+  N LT +           F N     S+DL +NKLT  +        L  L    ++
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLS 521

Query: 518 HNKLSG 523
           +N  S 
Sbjct: 522 YNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (386), Expect = 2e-39
 Identities = 64/468 (13%), Positives = 128/468 (27%), Gaps = 79/468 (16%)

Query: 54  LDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGN 113
           +  +         + +  +   ++   T  D        L ++ V +       P  L  
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 114 MTSLQVLNISSNQLTGNISSP-------PLKHLKSIQELKLSNNYFQ---IPISLGPLYN 163
           +  +Q++N++ N+                    + IQ + +  N  +   +  SL     
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ---K 328

Query: 164 HSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHI 223
              L + +   NQ+                                  +  L  +NL++ 
Sbjct: 329 MKKLGMLECLYNQL-------------------------EGKLPAFGSEIKLASLNLAY- 362

Query: 224 NLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR-RHLTYLDVSDNFFQVHIP--- 279
           N   E P        +++ L   +N L  I  +        ++ +D S N          
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 280 ------VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG-------HIF 326
                      ++S ++LS N++     E L      L  + L  N +            
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG--GLYLSDNHLSGKIPRWLGNLS--- 381
               N   L  + L  N  + ++ +      L    G+ LS N  S   P    N S   
Sbjct: 482 ENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539

Query: 382 ---VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS 438
              +        N      P        L  L I   N    +                +
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS-NDIRKVNEKI----------TPN 588

Query: 439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQ 486
           +S LD+  N         +          + ++K   +      ++K+
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  145 bits (367), Expect = 7e-37
 Identities = 49/430 (11%), Positives = 132/430 (30%), Gaps = 83/430 (19%)

Query: 99  DHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISL 158
           + +     P   L +   +  L++     +G +    +  L  ++ L L ++  ++   L
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEKVNERL 123

Query: 159 GPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHV 218
                                                          PK +      +  
Sbjct: 124 ---------------------------------------------FGPKGISANMSDEQK 138

Query: 219 NLSHINLRGEFPNWLSENN-TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVH 277
               ++ +  F ++    + + L      ++      +         T +    N     
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-F 197

Query: 278 IP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNL 335
           +   V  +  L    +  +  + +        C +         +       K  NL +L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 336 WRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG 395
             +++     + ++P  L        + ++ N                          + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS----------------GEQLKDDW 295

Query: 396 PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPL 455
               +      +QI+ I   N   + P      S+++   +  +  L+   N+L G++P 
Sbjct: 296 QALADAPVGEKIQIIYIG-YNNLKTFPV---ETSLQK---MKKLGMLECLYNQLEGKLP- 347

Query: 456 RIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP--QLVELNALAV 513
             G+  ++ +LN+++N++T +  +     +Q E+L  ++NKL   IP       ++ ++ 
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSA 406

Query: 514 FSVAHNKLSG 523
              ++N++  
Sbjct: 407 IDFSYNEIGS 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 4/89 (4%)

Query: 443 DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG--- 499
           +   +    +  + + +  R+  L++     +G +      L + E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 500 -KIPPQLVELNALAVFSVAHNKLSGKTPD 527
              P  +    +                D
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVD 151

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  179 bits (456), Expect = 5e-49
 Identities = 95/492 (19%), Positives = 170/492 (34%), Gaps = 32/492 (6%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L +  +  I     +S   L  L L+ + L   + +  L     L+ L      +  +  
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDF 122

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPISLGPLYNHSN 166
             L N  +L+ L + SN ++ +I  P     + ++ L   NN         +  L   +N
Sbjct: 123 IPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 167 LKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ-HDLKHVNLSHINL 225
           L + +   N I         +  FQ  +   +    V F          L       ++ 
Sbjct: 182 LSL-NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 226 RGEFPNWLSEN-NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG--N 282
               P          ++++    +Y   I     H    L  LD++       +P G   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI-NLTNLWRLQLD 341
           + +L  L LS N+    + +  A    SL +L +  N  +  + +  + NL NL  L L 
Sbjct: 300 LSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 342 GNH--FIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG-PIP 398
            +           L N +    L LS N                E + +    L+     
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 399 MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG 458
             F  L+ L++L++S   +  S    F          L ++  L+L  N        +  
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLF--------DGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 459 ---NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFS 515
               L R+  L +S   L+ +    F++LK    +DLS+N+LT      L  L  +   +
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529

Query: 516 VAHNKLSGKTPD 527
           +A N +S   P 
Sbjct: 530 LASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  161 bits (409), Expect = 2e-42
 Identities = 80/476 (16%), Positives = 147/476 (30%), Gaps = 43/476 (9%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
            S + L  S + L  TI +      ++L  L +    +Y +      +   L  L +++N
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
            L   ++   L   K+++ L          I   PL+N   L+     +N I        
Sbjct: 92  PLIF-MAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHI-------- 141

Query: 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE-NNTKLQTLV 244
                          S +  PK    +  LK ++  +  +       +S        +L 
Sbjct: 142 ---------------SSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG----NMKSLSVLDLSKNRLIGKI 300
              N ++GI +           L+       + I  G     ++SL +            
Sbjct: 186 LNGNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 301 PERLAMGCF-SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF 359
           P      C  S+  + L  +       +     + L  L L   H + E+P  L   +  
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTL 303

Query: 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNIF 418
             L LS N           N      + +  N     +       L  L+ LD+S  +  
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS-HDDI 362

Query: 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI- 477
            +   C           L+ +  L+LS N+             ++  L+++  +L     
Sbjct: 363 ETSDCCNLQLR-----NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 478 LSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA 533
            S F NL   + L+LS++ L          L AL   ++  N              
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (328), Expect = 5e-32
 Identities = 73/436 (16%), Positives = 125/436 (28%), Gaps = 92/436 (21%)

Query: 94  QELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ 153
           +  + ++  L  +P        S + L  S N L   I +     L ++  L L+     
Sbjct: 15  KTYNCENLGLNEIPG---TLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRC--- 67

Query: 154 IPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQH 213
                                                Q+  I                QH
Sbjct: 68  -------------------------------------QIYWIH---------EDTFQSQH 81

Query: 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF 273
            L  + L+   L       LS     L+ L  +   +S I                    
Sbjct: 82  RLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGISSI----------------DFIP 124

Query: 274 FQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLT 333
                   N K+L  L L  N  I  I          L+ L   NN +         +L 
Sbjct: 125 L------HNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 334 NLWRLQLDGNH-FIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVS--EDVIMPN 390
               L L+ N   I  I     +  +F  L          I + L N ++         +
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 391 NHLEGPIPMEF--CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448
              E   P  F       ++ +++ K   F    + F+          + +  LDL+   
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC--------FSGLQELDLTATH 289

Query: 449 LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE- 507
           L+ E+P  +  L+ +  L +S NK   L   + SN      L +  N    ++    +E 
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 508 LNALAVFSVAHNKLSG 523
           L  L    ++H+ +  
Sbjct: 349 LENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 5e-30
 Identities = 88/511 (17%), Positives = 158/511 (30%), Gaps = 73/511 (14%)

Query: 7   ELHNLTNLENLTL-DNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALD--KNFLQVIK 63
           +      L+ L   +N+  ++S             +     +     +L+   N +  I+
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLS------------KEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 64  S----MTSLKLLSLSNSRLNGTILDQ-GLCEFVHLQELHVDHNNLYGVPPWCLGNM--TS 116
                    + L+   ++    I           L     +  +   + P     +   S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 117 LQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF-QIPISLGPLYNHSNLKIFDSENN 175
           ++ +N+  +     ISS        +QEL L+  +  ++P  L  L   S LK      N
Sbjct: 256 VESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGLVGL---STLKKLVLSAN 311

Query: 176 QIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE 235
           +                 ++               +   L H+++     R E      E
Sbjct: 312 KF---------------ENLC---------QISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 236 NNTKLQTLVQVNNYLSGIFQMPKHAR--RHLTYLDVSDNFFQVHIPVG---NMKSLSVLD 290
           N   L+ L   ++ +          R   HL  L++S N     +          L +LD
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLD 406

Query: 291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF---IG 347
           L+  RL  K  +        L+ L LS++ +          L  L  L L GNHF     
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 348 EIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFL 407
           +   SL        L LS   LS        +L +   V + +N L          L  +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 408 QILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467
             L+++  +I   LPS            L+    ++L  N L         N+  +    
Sbjct: 527 Y-LNLASNHISIILPSLL--------PILSQQRTINLRQNPLDCT----CSNIYFLEWYK 573

Query: 468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
            +  KL     +   N      + LS   L+
Sbjct: 574 ENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (310), Expect = 1e-29
 Identities = 78/406 (19%), Positives = 146/406 (35%), Gaps = 72/406 (17%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L K++   I        + L+ L L+ + L+   L  GL     L++L +  N    +  
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNL 167
               N  SL  L+I  N     + +  L++L++++EL LS++  +        L N S+L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRG 227
           +  +   N+                 S+           +       L+ ++L+   L+ 
Sbjct: 379 QSLNLSYNEP---------------LSLK---------TEAFKECPQLELLDLAFTRLKV 414

Query: 228 EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLS 287
           +      +N   L+ L   ++ L                   S+  F        + +L 
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDIS----------------SEQLFD------GLPALQ 452

Query: 288 VLDLSKNRLIGKIPERLAM--GCFSLRYLVLSNNKMKG---HIFSKKINLTNLWRLQLDG 342
            L+L  N       ++         L  LVLS   +     H F+   +L  +  + L  
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMMNHVDLSH 509

Query: 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC 402
           N       E+LS+      L L+ NH+S  +P  L  LS    + +  N L+      + 
Sbjct: 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY- 567

Query: 403 QLNFLQILDISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDLSCN 447
              FL+    + + +       C NP  ++ G  L+    + LSC+
Sbjct: 568 ---FLEWYKENMQKLEDTEDTLCENPPLLR-GVRLSD---VTLSCS 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (293), Expect = 1e-27
 Identities = 56/343 (16%), Positives = 99/343 (28%), Gaps = 33/343 (9%)

Query: 210 YHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDV 269
             +   K  N  ++ L  E P  L  +    + L    N L  I         +LT+LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 270 SDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
           +       I      +   L  L L+ N LI  + E    G  +L++L      +    F
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDF 122

Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSE-- 384
               N   L  L L  NH                 L   +N +       + +L  +   
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 385 DVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ------------ 432
            + +  N + G I          Q L+         +       +I+             
Sbjct: 183 SLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 433 --------GKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
                   G    S+  ++L  +             + +  L+++   L+  + S    L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGL 300

Query: 485 KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
              + L LS NK             +L   S+  N    +   
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 6e-16
 Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 11/193 (5%)

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L  S N L          L     + +    +       F   + L  L ++   +    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF 481
            +  +           ++  L      ++    + + N   + +L +  N ++ + L   
Sbjct: 98  ETALSG--------PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSV--AHNKLSGKTPDWVAQFATFNGSS 539
              ++ + LD   N +       +  L      S+    N ++G         A F   +
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLN 208

Query: 540 YDGNPFLSSSCNG 552
           + G   L     G
Sbjct: 209 FGGTQNLLVIFKG 221

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  180 bits (457), Expect = 5e-48
 Identities = 67/458 (14%), Positives = 144/458 (31%), Gaps = 40/458 (8%)

Query: 92  HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
            +  L +      G  P  +G +T L+VL+  ++  T +      + L +    +   + 
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSEERKHR 382

Query: 152 FQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTP----KFQLNSIILSHGSGVTFPK 207
            ++      L     L + D   + I    E   +        +   I           K
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 208 FLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYL 267
            +     L+ +  ++          +   +       Q  N       +     + LT +
Sbjct: 443 AIQRLTKLQIIYFANSPFTY-DNIAVDWEDANSDYAKQYENEELSWSNL-----KDLTDV 496

Query: 268 DVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAM--------GCFSLRYLVLS 317
           ++ +      +P  + ++  L  L+++ NR I     +               ++   + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 318 NNKMKGHIFSKKI-NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRW 376
            N ++    S  +  +  L  L    N       E+         L L  N +   IP  
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPED 613

Query: 377 LGNLSVS-EDVIMPNNHLEG-PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGK 434
               +   E +   +N L+  P       +  +  +D S   I     +        +G 
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 435 PLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL-------ILSTFSNLKQT 487
             ++   + LS N++           + I T+ +S+N +T +           + N    
Sbjct: 674 NAST---VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 488 ESLDLSYNKLTGKIPPQLV--ELNALAVFSVAHNKLSG 523
            ++DL +NKLT  +        L  L+   V++N  S 
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  179 bits (455), Expect = 7e-48
 Identities = 86/558 (15%), Positives = 167/558 (29%), Gaps = 77/558 (13%)

Query: 7   ELHNLTNLENLTL-DNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSM 65
            +  LT L+ L+   +S      L       P M +       M      K FL   + +
Sbjct: 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH---YKKMFLDYDQRL 398

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVD--HNNLYGVPPWCLGNMTSLQVLNIS 123
               LL  + +R       +     + L++  +    N +  +    +  +T LQ++  +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKD-SRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFA 456

Query: 124 SNQLTGNISS------------------PPLKHLKSIQELKLSNNYF--QIPISLGPLYN 163
           ++  T +  +                      +LK + +++L N     Q+P  L  L  
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-- 514

Query: 164 HSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHI 223
              L+  +   N+                 S                    ++   + + 
Sbjct: 515 -PELQSLNIACNR---------------GISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 224 NLRGEFPNWLSENNTKLQTLVQVNNYLSGI--FQMPKHARRHLTYLDVSDNFFQVHIPVG 281
           NL     +   +   KL  L  V+N +  +  F         LT L +  N  +  IP  
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK----LTDLKLDYNQIE-EIPED 613

Query: 282 ---NMKSLSVLDLSKNRLIGKIPERLAMG-CFSLRYLVLSNNKMKGH-----IFSKKINL 332
                  +  L  S N+L   IP        + +  +  S NK+                
Sbjct: 614 FCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS-------GKIPRWLGNLSVSED 385
            N   + L  N       E  +  +    + LS+N ++               N  +   
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 386 VIMPNNHLEG-PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDL 444
           + +  N L           L +L  +D+S  N F S P+     +  Q K        D 
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQP--LNSSQLKAFGIRHQRDA 789

Query: 445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ 504
             N++  + P  I     +  L +  N +  +       L     LD++ N         
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNPNISIDVTS 846

Query: 505 LVELNALAVFSVAHNKLS 522
           +       ++ + ++K  
Sbjct: 847 VCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (383), Expect = 1e-38
 Identities = 67/456 (14%), Positives = 128/456 (28%), Gaps = 54/456 (11%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
           I+ +T L+++  +NS              V  ++ + D+   Y        N+  L  + 
Sbjct: 444 IQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGP--------LYNHSNLKIFDSE 173
           + +      +    L  L  +Q L ++ N       L                ++IF   
Sbjct: 498 LYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 174 NNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWL 233
            N +     S SL    +L  +   H        F  +   L  + L +  +  E P   
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK-LTDLKLDYNQIE-EIPEDF 614

Query: 234 SENNTKLQTLVQVNNYLSGIFQMPKHAR-RHLTYLDVSDNFFQ-------VHIPVGNMKS 285
                +++ L   +N L  I  +        +  +D S N            +      +
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK-------MKGHIFSKKINLTNLWRL 338
            S + LS N +    P  L      +  ++LSNN                  N   L  +
Sbjct: 675 ASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 339 QLDGNHFIGEIPESLSNCNLFG--GLYLSDNHLSGKIPRWLGNLS------VSEDVIMPN 390
            L  N  +  + +      L     + +S N  S   P    N S      +        
Sbjct: 734 DLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 391 NHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT 450
           N +    P        L  L I   N    +                 +  LD++ N   
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGS-NDIRKVDEKL----------TPQLYILDIADNPNI 840

Query: 451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQ 486
                 +          + ++K   +       +++
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  140 bits (354), Expect = 7e-35
 Identities = 48/449 (10%), Positives = 127/449 (28%), Gaps = 89/449 (19%)

Query: 99  DHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISL 158
           + +     P   L N   +  L+++     G +    +  L  ++ L    +   +   L
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 159 GPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHV 218
                 +                                                     
Sbjct: 366 FGDEELT-------------------------------------------------PDMS 376

Query: 219 NLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSG---IFQMPKHARRHLTYLDVSDNFFQ 275
                 +R  +     + + +L     + + ++    +  + K +R  L    + +   +
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 276 VH-IP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINL 332
           +  I   +  +  L ++  + +                         K   +      NL
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNL 490

Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
            +L  ++L     + ++P+ L +      L ++ N       +   + +           
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWT----------- 538

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
               +  +      +QI  +   N     P+     S+++   +  +  LD   NK+   
Sbjct: 539 ---RLADDEDTGPKIQIFYMG-YNNLEEFPA---SASLQK---MVKLGLLDCVHNKVR-H 587

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP--QLVELNA 510
           +    G   ++  L + +N++  +     +   Q E L  S+NKL   IP       +  
Sbjct: 588 LEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV 645

Query: 511 LAVFSVAHNKLSGKTPDWVAQFATFNGSS 539
           +     ++NK+  +  +       + G +
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 6e-12
 Identities = 35/305 (11%), Positives = 80/305 (26%), Gaps = 89/305 (29%)

Query: 6   IELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSM 65
               ++  + ++    +    S  ++I+                                
Sbjct: 638 FNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDY------------------------KG 672

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVP-------PWCLGNMTSLQ 118
            +   ++LS + +      +       +  + + +N +  +P            N   L 
Sbjct: 673 INASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQI 177
            +++  N+LT          L  +  + +S N F   P         S LK F   + + 
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS---SQLKAFGIRHQR- 787

Query: 178 YAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN 237
                                                    +     +  ++P  ++   
Sbjct: 788 -----------------------------------------DAEGNRILRQWPTGIT-TC 805

Query: 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGN-----MKSLSVLDLS 292
             L  L   +N +  +    +     L  LD++DN     I V +        + VL   
Sbjct: 806 PSLIQLQIGSNDIRKV---DEKLTPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYD 861

Query: 293 KNRLI 297
           K + I
Sbjct: 862 KTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 8/103 (7%), Positives = 27/103 (26%)

Query: 420 SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS 479
              +             +     +   +    +  + + N  R+  L+++     G +  
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341

Query: 480 TFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
               L + + L    +  T        E     +     +++ 
Sbjct: 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  174 bits (442), Expect = 5e-47
 Identities = 93/506 (18%), Positives = 164/506 (32%), Gaps = 47/506 (9%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L +  ++ I       +  L  L L+ + +              L+ L      L  +  
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLES 121

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPISLGPLYN-HS 165
           + +G + +L+ LN++ N +          +L ++  + LS NY Q      L  L     
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 166 NLKIFDSENNQIYAQTESHSLTPKFQLNSIILSH--GSGVTFPKFLYHQHDLKHVNLSHI 223
                D   N I             +L+ + L     S       L +   L    L   
Sbjct: 182 VNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 224 NLRGEFPNWLSENNT--KLQTLVQVNNYLSGIFQMPKHAR-----RHLTYLDVSDNFFQV 276
             + E    + E +    L  +      L+                +++ + ++    + 
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
              V        L + + + + + P    +    L+ L L+ N  KG I  KK+ L +L 
Sbjct: 300 LEDVPKHFKWQSLSIIRCQ-LKQFP---TLDLPFLKSLTLTMN--KGSISFKKVALPSLS 353

Query: 337 RLQLDGNHFIGEIPESLSNCNLFG--GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE 394
            L L  N        S S+        L LS N     +      L   + +   ++ L+
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK 412

Query: 395 GPIPME-FCQLNFLQILDISKKNIFGSLPSCFNPFS-----------IKQGKPLNSMSGL 442
                  F  L  L  LDIS  N        F   +            K     N  +  
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 443 ------DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK 496
                 DLS  +L          L R+  LN+SHN L  L  S ++ L    +LD S+N+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 497 LTGKIPPQLVELNALAVFSVAHNKLS 522
           +            +LA F++ +N ++
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (398), Expect = 4e-41
 Identities = 89/495 (17%), Positives = 156/495 (31%), Gaps = 39/495 (7%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L  N L+++      + + L+ L LS   +   I D+      HL  L +  N +    P
Sbjct: 39  LSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSP 97

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168
                +TSL+ L     +L   + S P+  L ++++L +++N+           N +NL 
Sbjct: 98  GSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 169 IFDSENNQI---YAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINL 225
             D   N I                   S+ +S           +    L  + L     
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 226 RGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHL--------TYLDVSDNFFQVH 277
                    +N   L     +         +       +            ++       
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 278 IPV--GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNL 335
             V    + ++S + L+    I  + +      F  + L +   ++K        +L  L
Sbjct: 277 DIVKFHCLANVSAMSLAGVS-IKYLED--VPKHFKWQSLSIIRCQLKQFPTL---DLPFL 330

Query: 336 WRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVS--EDVIMPNNHL 393
             L L  N   G I            L LS N LS        +L  +    + +  N  
Sbjct: 331 KSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 394 EGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEI 453
              +   F  L  LQ LD     +       F+ F       L  +  LD+S      + 
Sbjct: 389 II-MSANFMGLEELQHLDFQHSTLKRVTE--FSAFL-----SLEKLLYLDISYTNTKIDF 440

Query: 454 PLRIGNLTRIHTLNVSHNKLTGLILS-TFSNLKQTESLDLSYNKLTGKIPPQLVELNALA 512
                 LT ++TL ++ N      LS  F+N      LDLS  +L          L+ L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 513 VFSVAHNKLSGKTPD 527
           + +++HN L      
Sbjct: 501 LLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (376), Expect = 3e-38
 Identities = 88/458 (19%), Positives = 154/458 (33%), Gaps = 42/458 (9%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
               + + +  N L  +  +   N + LQ L++S  ++   I       L  +  L L+ 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG 89

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHG--SGVTFPK 207
           N  Q   S G     ++L+   +   ++ A  ES  +     L  + ++H        P 
Sbjct: 90  NPIQS-FSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 208 FLYHQHDLKHVNLSHINLRGEFPN---WLSENNTKLQTLVQVNNYLSGI----FQMPKHA 260
           +  +  +L HV+LS+  ++    N   +L EN     +L    N +  I    FQ  K  
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-- 205

Query: 261 RRHLTYLDVSDNFFQVHIP---VGNMKSLSVLDLSKNRL-----IGKIPERLAMGCFSLR 312
              L  L +  NF   +I    + N+  L V  L          +      +  G   + 
Sbjct: 206 ---LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 313 Y--LVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS 370
                L+          K   L N+  + L G     +  E +     +  L +    L 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK 320

Query: 371 GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI 430
                 L  L     + +  N            L  L  LD+S+  +  S    ++    
Sbjct: 321 QFPTLDLPFLKS---LTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLG- 374

Query: 431 KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI-LSTFSNLKQTES 489
                 NS+  LDLS N     +      L  +  L+  H+ L  +   S F +L++   
Sbjct: 375 -----TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 490 LDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
           LD+SY           + L +L    +A N     T  
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 8/191 (4%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
              +  L+ L   +S L              L  L + + N           +TSL  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           ++ N    N  S    +  ++  L LS    +  IS G       L++ +  +N +    
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 182 ESHSLTPKFQLNSIILSHGS-GVTFPKFLYHQHDLKHVNLSHINLR-----GEFPNWLSE 235
            S      + L+++  S      +     +    L   NL++ ++       +F  W+ E
Sbjct: 514 SS-HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE 572

Query: 236 NNTKLQTLVQV 246
               L  + Q+
Sbjct: 573 QKQFLVNVEQM 583

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 9e-15
 Identities = 46/294 (15%), Positives = 83/294 (28%), Gaps = 61/294 (20%)

Query: 6   IELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSM 65
               +L  L++LTL  +   +S                                    ++
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISF--------------------------------KKVAL 349

Query: 66  TSLKLLSLSNSRLNGTILDQ-GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
            SL  L LS + L+ +            L+ L +  N    +       +  LQ L+   
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQH 408

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESH 184
           + L           L+ +  L +S    +I    G     ++L       N         
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSF------- 460

Query: 185 SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV 244
                              T      +  +L  ++LS   L             +LQ L 
Sbjct: 461 ----------------KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLN 503

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV--GNMKSLSVLDLSKNRL 296
             +N L  +     +    L+ LD S N  +    +     KSL+  +L+ N +
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
                 KL+ ++P  I + T+   +++S N L  L   +FSN  + + LDLS  ++    
Sbjct: 16  YQCMDQKLS-KVPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 502 PPQLVELNALAVFSVAHNKLSGKTPDW 528
                 L+ L+   +  N +   +P  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  156 bits (397), Expect = 2e-40
 Identities = 119/628 (18%), Positives = 209/628 (33%), Gaps = 95/628 (15%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L  N+++ +       +  L+LL L +     TI  +      +L+ L +  + +Y + P
Sbjct: 31  LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90

Query: 109 WCLGNMTSLQVLNISSNQLT-GNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
                +  L  L +    L+   +     ++LK++  L LS N  +           ++L
Sbjct: 91  DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150

Query: 168 KIFDSENNQIYAQTES--------HSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVN 219
           K  D  +NQI+   E                  NS+              +    L+ ++
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 220 LSHINLRGEFPNWLSENNTKLQTLVQV-----------NNYLSGIFQ--MPKHARRHLTY 266
           +S      +     S   +K Q    +            + +    Q      AR  + +
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 267 LDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG 323
           LD+S  F    +       +K L VL+L+ N+ I KI +    G  +L+ L LS N +  
Sbjct: 271 LDLSHGFVF-SLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 324 HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG-KIPRWLGNLSV 382
              S    L  +  + L  NH      ++         L L DN L+       + ++ +
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388

Query: 383 S--------------EDVIMPNNHLEG-PIPMEFCQLNFLQILDISKKNIFGSLPSCFNP 427
           S                + +  N LE   I     ++  LQIL +++ N F S      P
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTP 447

Query: 428 FSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-----GNLTRIHTLNVSHNKLTGLILSTFS 482
                     S+  L L  N L       +       L+ +  L ++HN L  L    FS
Sbjct: 448 SE------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

Query: 483 NLKQTESLDLSYNKLT----GKIPPQLVEL----NALAVFSVAH---------------- 518
           +L     L L+ N+LT      +P  L  L    N L   +                   
Sbjct: 502 HLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561

Query: 519 -----------NKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCNGEDDSLIDMNNFYIIF 567
                      N  +       A        S+ G    S S  G D+  +  +  + +F
Sbjct: 562 ECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 568 AVSYVIVILGIDGVLYVNPYSGRRWFYF 595
            V  V + L +  +L V  + G  +  +
Sbjct: 622 IVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (291), Expect = 4e-27
 Identities = 64/433 (14%), Positives = 136/433 (31%), Gaps = 65/433 (15%)

Query: 92  HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
             + L +  N +  V       +  LQ+L + S      I     ++L +++ L L ++ 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 152 FQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYH 211
               +         +L         +                         V    +  +
Sbjct: 85  IYF-LHPDAFQGLFHLFELRLYFCGLS----------------------DAVLKDGYFRN 121

Query: 212 QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSD 271
              L  ++LS   +R  + +        L+++   +N +  +    +H    L       
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV---CEHELEPLQ------ 172

Query: 272 NFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKIN 331
                       K+LS   L+ N L  ++           R +VL    + G       N
Sbjct: 173 -----------GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------N 214

Query: 332 LTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVS--EDVIMP 389
              +       N        SL   +   G     +++          L+ S    + + 
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449
           +  +       F  L  L++L+++   I       F          L+++  L+LS N L
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--------YGLDNLQVLNLSYNLL 326

Query: 450 TGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN 509
                     L ++  +++  N +  +   TF  L++ ++LDL  N LT      +  + 
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIP 381

Query: 510 ALAVFSVAHNKLS 522
           ++    ++ NKL 
Sbjct: 382 SIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (284), Expect = 3e-26
 Identities = 75/426 (17%), Positives = 134/426 (31%), Gaps = 90/426 (21%)

Query: 100 HNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLG 159
             NL  VP      + + + L +S N +   +++     L+ +Q L+L + Y  + I   
Sbjct: 13  FCNLTQVPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 160 PLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVN 219
              N  NL+I D  +++I      + L                   P        L  + 
Sbjct: 68  AFRNLPNLRILDLGSSKI------YFLH------------------PDAFQGLFHLFELR 103

Query: 220 LSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP 279
           L                                           L+   + D +F+    
Sbjct: 104 LYFCG---------------------------------------LSDAVLKDGYFR---- 120

Query: 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFS--KKINLTNLWR 337
             N+K+L+ LDLSKN++             SL+ +  S+N++        + +    L  
Sbjct: 121 --NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 338 LQLDGNHFIGEIPESLSNC-NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP 396
             L  N     +      C N F  + L    +S       GN    +     +N +   
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS-------GNGWTVDITGNFSNAISKS 231

Query: 397 IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLR 456
                   + +        NI     + F       G   +S+  LDLS   +       
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTF------AGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 457 IGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSV 516
              L  +  LN+++NK+  +    F  L   + L+LSYN L          L  +A   +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 517 AHNKLS 522
             N ++
Sbjct: 346 QKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 11/198 (5%)

Query: 331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI-PRWLGNLSVSEDVIMP 389
            L    RL L  N+       S         L L   +    I      NL     + + 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449
           ++ +    P  F  L  L  L +               F     + L +++ LDLS N++
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYF-----RNLKALTRLDLSKNQI 135

Query: 450 TG-EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQT--ESLDLSYNKLTGKIPPQLV 506
               +    G L  + +++ S N++  +       L+        L+ N L  ++     
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 507 E-LNALAVFSVAHNKLSG 523
           + +N      +    +SG
Sbjct: 196 KCMNPFRNMVLEILDVSG 213

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
                  LT ++P     L     L +S N +  +  S+F  L+Q + L+L        I
Sbjct: 9   AFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 502 PPQ-LVELNALAVFSVAHNKLS 522
             +    L  L +  +  +K+ 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIY 86

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (367), Expect = 1e-37
 Identities = 100/484 (20%), Positives = 178/484 (36%), Gaps = 47/484 (9%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
             ++       L  + +  T+      +   +  L  D   +  +    +  + +L  +N
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQIN 74

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
            S+NQLT      PLK+L  + ++ ++NN       L  L   +NL      NNQI    
Sbjct: 75  FSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANL---TNLTGLTLFNNQITDID 128

Query: 182 ESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQ 241
              +LT    LN + LS  + ++    L     L+ ++  +  +    P     N T L+
Sbjct: 129 PLKNLT---NLNRLELSS-NTISDISALSGLTSLQQLSFGN-QVTDLKP---LANLTTLE 180

Query: 242 TLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301
            L   +N +S I  + K    +L  L  ++N      P+G + +L  L L+ N+L     
Sbjct: 181 RLDISSNKVSDISVLAKL--TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361
                   +L  L L+NN++          LT L  L+L  N      P  L+       
Sbjct: 239 LA---SLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L L++N L    P  + NL     + +  N++    P     L  LQ L     N    +
Sbjct: 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN-NKVSDV 346

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF 481
            S  N         L +++ L    N+++   P  + NLTRI  L ++    T   ++  
Sbjct: 347 SSLAN---------LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395

Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYD 541
           +N+    ++      L    P  + +  +     +  N  S  T +    F+        
Sbjct: 396 ANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKG 452

Query: 542 GNPF 545
              F
Sbjct: 453 TTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (302), Expect = 3e-29
 Identities = 98/521 (18%), Positives = 181/521 (34%), Gaps = 101/521 (19%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS 64
            +   +L  +  L  D        ++SI                                
Sbjct: 39  TVSQTDLDQVTTLQADR-----LGIKSIDGVE---------------------------Y 66

Query: 65  MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
           + +L  ++ SN++L        L     L ++ +++N +  + P  L N+T+L  L + +
Sbjct: 67  LNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESH 184
           NQ+T      PLK+L ++  L+LS+N      +L  L   ++L+     N          
Sbjct: 122 NQIT---DIDPLKNLTNLNRLELSSNTISDISALSGL---TSLQQLSFGNQVT------- 168

Query: 185 SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV 244
            L P   L +                    L+ +++S   +     + L+   T L++L+
Sbjct: 169 DLKPLANLTT--------------------LERLDISSNKVSD--ISVLA-KLTNLESLI 205

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERL 304
             NN +S I   P     +L  L ++ N  +    + ++ +L+ LDL+ N++    P   
Sbjct: 206 ATNNQISDIT--PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 262

Query: 305 AMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYL 364
             G   L  L L  N++     S    LT L  L+L+ N         +SN      L L
Sbjct: 263 --GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTL 316

Query: 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC 424
             N++S   P  + +L+  + +   NN +          L  +  L      I     S 
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQI-----SD 367

Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL-STFSN 483
             P +      L  ++ L L+    T        N++     N   N    LI  +T S+
Sbjct: 368 LTPLA-----NLTRITQLGLNDQAWTNAPVNYKANVS---IPNTVKNVTGALIAPATISD 419

Query: 484 LKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK 524
                  D+++N  +          +            SG 
Sbjct: 420 GGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGT 459

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.3 bits (248), Expect = 3e-22
 Identities = 65/371 (17%), Positives = 130/371 (35%), Gaps = 59/371 (15%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS 64
           +  L  LT+L+ L+  N    +                                   + +
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLK---------------------------------PLAN 175

Query: 65  MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
           +T+L+ L +S++++  + +   L +  +L+ L   +N +  + P  LG +T+L  L+++ 
Sbjct: 176 LTTLERLDISSNKV--SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESH 184
           NQL        L  L ++ +L L+NN      +L PL   + L       NQI   +   
Sbjct: 231 NQLKDI---GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI---SNIS 281

Query: 185 SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV 244
            L     L ++ L+  + +     + +  +L ++ L   N+    P     + TKLQ L 
Sbjct: 282 PLAGLTALTNLELNE-NQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLF 337

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERL 304
             NN +S +         ++ +L    N      P+ N+  ++ L L+            
Sbjct: 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYK 395

Query: 305 AMGCFSLRYLVLSNNKMKGHIFSKKI-NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY 363
           A    ++       N     I    I +  +     +  N       E     +    + 
Sbjct: 396 A----NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL-PSYTNEVSYTFSQPVTIG 450

Query: 364 LSDNHLSGKIP 374
                 SG + 
Sbjct: 451 KGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 44/208 (21%)

Query: 3   SFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI 62
           S +  L  LT L NL L+ +                                    +  I
Sbjct: 278 SNISPLAGLTALTNLELNENQL--------------------------------EDISPI 305

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
            ++ +L  L+L  + ++       +     LQ L   +N +  V    L N+T++  L+ 
Sbjct: 306 SNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSA 360

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE 182
             NQ++      PL +L  I +L L++       +  P+   +N+ I ++  N   A   
Sbjct: 361 GHNQIS---DLTPLANLTRITQLGLNDQ----AWTNAPVNYKANVSIPNTVKNVTGALIA 413

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPKFLY 210
             +++         ++        +  Y
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSY 441

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (365), Expect = 6e-37
 Identities = 82/487 (16%), Positives = 164/487 (33%), Gaps = 58/487 (11%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L +  +Q I     +S++ L  L L+ + +  ++          LQ+L     NL  +  
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPISLGPLYN--- 163
           + +G++ +L+ LN++ N +          +L +++ L LS+N  Q      L  L+    
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 164 ---------------------HSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG 202
                                   L      NN          +     L    L  G  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 203 VTFPKFLY---------HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI 253
                                ++   L++++   +    L    T + +   V+  +  +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 254 FQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRY 313
                       +L++ +  F    P   +KSL  L  + N+      E   +   SL +
Sbjct: 298 K--DFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEF 351

Query: 314 LVLSNNKM--KGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG 371
           L LS N +  KG         T+L  L L  N  +  +  +         L    ++L  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 372 KIPRW-LGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI 430
                   +L     + + + H        F  L+ L++L ++  +   +     + F+ 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFT- 467

Query: 431 KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESL 490
                L +++ LDLS  +L    P    +L+ +  LN++ N+L  +    F  L   + +
Sbjct: 468 ----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 491 DLSYNKL 497
            L  N  
Sbjct: 524 WLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (347), Expect = 1e-34
 Identities = 78/481 (16%), Positives = 162/481 (33%), Gaps = 68/481 (14%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
             +  L  +       + +LK L+++++ +    L +      +L+ L +  N +  +  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 109 WCLGNMTSLQV----LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNH 164
             L  +  + +    L++S N +   I     K +  + +L L NN+  + +    +   
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 165 SNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN 224
           + L++      +   +           L     S   G+           ++   L++++
Sbjct: 225 AGLEVHRLVLGEFRNEG---------NLEKFDKSALEGLC-------NLTIEEFRLAYLD 268

Query: 225 LRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMK 284
              +    L    T + +   V+  +  +            +L++ +  F    P   +K
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTLKLK 325

Query: 285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM--KGHIFSKKINLTNLWRLQLDG 342
           SL  L  + N+      E   +   SL +L LS N +  KG         T+L  L L  
Sbjct: 326 SLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC 402
           N  +  +  +         L    ++L       +   SV                  F 
Sbjct: 383 NG-VITMSSNFLGLEQLEHLDFQHSNLK-----QMSEFSV------------------FL 418

Query: 403 QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLT 461
            L  L  LDIS  +   +    F          L+S+  L ++ N         I   L 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKL 521
            +  L++S  +L  L  + F++L   + L+++ N+L          L +L    +  N  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 522 S 522
            
Sbjct: 531 D 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (329), Expect = 3e-32
 Identities = 79/481 (16%), Positives = 144/481 (29%), Gaps = 49/481 (10%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
            S K L LS + L   +       F  LQ L +    +  +      +++ L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
            +  +++      L S+Q+L          +   P+ +   LK  +  +N I +      
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 186 LTPKFQLNSIILSH-----GSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240
            +    L  + LS                        ++LS   +    P        +L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRL 202

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLS------------- 287
             L   NN+ S    + K   + L  L+V           GN++                
Sbjct: 203 HKLTLRNNFDS--LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 288 VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG-HIFSKKINLTNLWRLQLDGNHFI 346
              L+           L     ++    L +  ++    FS      +L  +      F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 347 GEIPESLSNCNLFGGLYLSDNHLSGKIP-RWLGNLSVSEDVIMPNNHLE--GPIPMEFCQ 403
               +SL        L  + N          L +L     + +  N L   G        
Sbjct: 321 TLKLKSLKR------LTFTSNKGGNAFSEVDLPSLEF---LDLSRNGLSFKGCCSQSDFG 371

Query: 404 LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLTR 462
              L+ LD+S   +  ++ S F          L  +  LD   + L       +  +L  
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNF--------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ-LVELNALAVFSVAHNKL 521
           +  L++SH          F+ L   E L ++ N       P    EL  L    ++  +L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 522 S 522
            
Sbjct: 483 E 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (303), Expect = 7e-29
 Identities = 80/456 (17%), Positives = 157/456 (34%), Gaps = 33/456 (7%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
               + L +  N L  +  +   +   LQVL++S  ++   I     + L  +  L L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHG--SGVTFPK 207
           N  Q  ++LG     S+L+   +    + A  E+  +     L  + ++H        P+
Sbjct: 86  NPIQS-LALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 208 FLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARR--HLT 265
           +  +  +L+H++LS   ++  +   L   +      + ++  L+ +  +   A +   L 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 266 YLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRL-----IGKIPERLAMGCFSLRYLVLS 317
            L + +NF  +++       +  L V  L          + K  +    G  +L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 318 NNKMKG---HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIP 374
              +      I      LTN+    L     I  + +   N      L L +        
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGW-QHLELVNCKFGQFPT 321

Query: 375 RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGK 434
             L +L     +   +N            L  L+ LD+S +N       C          
Sbjct: 322 LKLKSLKR---LTFTSNKGGNAFS--EVDLPSLEFLDLS-RNGLSFKGCCSQSD-----F 370

Query: 435 PLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI-LSTFSNLKQTESLDLS 493
              S+  LDLS N +   +      L ++  L+  H+ L  +   S F +L+    LD+S
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 494 YNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV 529
           +             L++L V  +A N         +
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 7e-18
 Identities = 49/240 (20%), Positives = 89/240 (37%), Gaps = 14/240 (5%)

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG---HIFSKKINLT 333
            IP     S   LDLS N  +  +          L+ L LS  +++      +    +L+
Sbjct: 21  KIPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SLS 76

Query: 334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL 393
           +L  L L GN        + S  +    L   + +L+      +G+L   +++ + +N +
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 394 -EGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
               +P  F  L  L+ LD+S   I     +            L+    LDLS N +   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS----LDLSLNPMN-F 191

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILST-FSNLKQTESLDLSYNKLTGKIPPQLVELNAL 511
           I        R+H L + +N  +  ++ T    L   E   L   +   +   +  + +AL
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 8e-14
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 14/179 (7%)

Query: 3   SFLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI 62
                  +L +LE L L  +        S + FG   ++            L  N +  +
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD---------LSFNGVITM 388

Query: 63  ----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
                 +  L+ L   +S L             +L  L + H +           ++SL+
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           VL ++ N    N        L+++  L LS    +  +S     + S+L++ +  +NQ+
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 443 DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502
                    +IP  +   T+   L++S N L  L   +F +  + + LDLS  ++     
Sbjct: 13  QCMELNFY-KIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 503 PQLVELNALAVFSVAHNKLSGKTPDW 528
                L+ L+   +  N +       
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA 95

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (320), Expect = 2e-32
 Identities = 72/430 (16%), Positives = 154/430 (35%), Gaps = 85/430 (19%)

Query: 93  LQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF 152
              L      +  + P    ++       +    +T        + L+SI +L ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV 56

Query: 153 QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ 212
               S+  +   +NL+  +   NQI        ++P   L                    
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQI------TDISPLSNLVK------------------ 89

Query: 213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDN 272
             L ++ +          N +++              +S +  +      +L  L ++++
Sbjct: 90  --LTNLYIGT--------NKITD--------------ISALQNLT-----NLRELYLNED 120

Query: 273 FFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINL 332
                 P+ N+  +  L+L  N  +  +   L+     L YL ++ +K+K        NL
Sbjct: 121 NISDISPLANLTKMYSLNLGANHNLSDLSP-LS-NMTGLNYLTVTESKVKDVTPIA--NL 176

Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
           T+L+ L L+ N  I +I   L++           N ++   P  + N++    + + NN 
Sbjct: 177 TDLYSLSLNYNQ-IEDI-SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
           +    P     L+ L  L+I    I     S  N         L  +  L++  N+++  
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQI-----SDINAVK-----DLTKLKMLNVGSNQISDI 280

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALA 512
               + NL+++++L +++N+L    +     L    +L LS N +T   P  L  L+ + 
Sbjct: 281 SV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336

Query: 513 VFSVAHNKLS 522
               A+  + 
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 1e-31
 Identities = 67/437 (15%), Positives = 137/437 (31%), Gaps = 108/437 (24%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
              +       L  + +   +      E   + +L V    +  +    +  +T+L+ LN
Sbjct: 18  DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVASIQG--IEYLTNLEYLN 72

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           ++ NQ+T      PL +L  +  L +  N      +L  L   +NL+      + I   +
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNL---TNLRELYLNEDNI---S 123

Query: 182 ESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQ 241
           +   L    ++ S+ L     ++    L +   L ++ ++   ++               
Sbjct: 124 DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-------------- 169

Query: 242 TLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301
                   ++ I  +       L  L ++ N  +   P+ ++ SL       N++    P
Sbjct: 170 --------VTPIANLTD-----LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP 216

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361
                    L  L + NNK+         NL+ L  L++  N        ++ +      
Sbjct: 217 VA---NMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQI--SDINAVKDLTKLKM 269

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L +  N +S                                 L+ L  L           
Sbjct: 270 LNVGSNQISD--------------------------ISVLNNLSQLNSLF---------- 293

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF 481
                                 L+ N+L  E    IG LT + TL +S N +T   +   
Sbjct: 294 ----------------------LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPL 329

Query: 482 SNLKQTESLDLSYNKLT 498
           ++L + +S D +   + 
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (251), Expect = 3e-23
 Identities = 59/346 (17%), Positives = 130/346 (37%), Gaps = 44/346 (12%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-- 62
           ++    L ++  L +         + SI                ++   L+ N +  I  
Sbjct: 37  VVTQEELESITKLVVAG-----EKVASIQGIE--------YLTNLEYLNLNGNQITDISP 83

Query: 63  -KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
             ++  L  L +  +++  T +   L    +L+EL+++ +N+  + P  L N+T +  LN
Sbjct: 84  LSNLVKLTNLYIGTNKI--TDIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           + +N    ++S  PL ++  +  L ++ +  +    + P+ N ++L       NQI    
Sbjct: 139 LGANHNLSDLS--PLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQI---E 190

Query: 182 ESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQ 241
           +   L     L+       + +T    + +   L  + + +  +          N ++L 
Sbjct: 191 DISPLASLTSLHYFTAYV-NQITDITPVANMTRLNSLKIGNNKITD-LSPL--ANLSQLT 246

Query: 242 TLVQVNN---YLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIG 298
            L    N    ++ +  + K     L  L+V  N       + N+  L+ L L+ N+L  
Sbjct: 247 WLEIGTNQISDINAVKDLTK-----LKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN 301

Query: 299 KIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH 344
           +  E +  G  +L  L LS N +         +L+ +         
Sbjct: 302 EDMEVIG-GLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 21/177 (11%)

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNI---- 417
           L      ++   P    +L+     ++    +   +  E  +L  +  L ++ + +    
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVASIQ 60

Query: 418 -FGSLPS------CFNPFS-IKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS 469
               L +        N  + I     L  ++ L +  NK+T    L   NLT +  L ++
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISAL--QNLTNLRELYLN 118

Query: 470 HNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
            + ++ +  S  +NL +  SL+L  N     + P L  +  L   +V  +K+   TP
Sbjct: 119 EDNISDI--SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (328), Expect = 3e-32
 Identities = 84/506 (16%), Positives = 173/506 (34%), Gaps = 67/506 (13%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEF-VHLQELHVDHNNLYGVP 107
           L  N +  I     ++  +L++L L +SR+    ++         L+ L +  N+L  + 
Sbjct: 33  LSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLS 90

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
               G ++SL+ LN+  N       +    +L ++Q L++ N      I        ++L
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLY-HQHDLKHVNLSHINLR 226
              + +   +    +S SL     ++ + L         +        ++++ L   NL 
Sbjct: 151 NELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 227 GEFPNWLS--ENNTKLQTLVQVNNYLSGI-----------------FQMPKHARRHLTYL 267
               + L   E ++ ++ L    + L+                    +        L   
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269

Query: 268 DVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GH 324
           + S++     +      ++  L + +   +      +      ++ + + N+K+      
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 325 IFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG------LYLSDNHLS--GKIPRW 376
                 +L +L  L L  N  + E    L N    G       L LS NHL    K    
Sbjct: 329 FSQ---HLKSLEFLDLSENLMVEEY---LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 377 LGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPL 436
           L  L     + +  N    P+P        ++ L++S       + +C            
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS-STGIRVVKTCI----------P 430

Query: 437 NSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK 496
            ++  LD+S N L     L +  L     L +S NKL  L  ++         + +S N+
Sbjct: 431 QTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLKTLPDASL--FPVLLVMKISRNQ 484

Query: 497 LTGKIPPQLVE-LNALAVFSVAHNKL 521
           L   +P  + + L +L    +  N  
Sbjct: 485 LK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 7e-29
 Identities = 96/523 (18%), Positives = 168/523 (32%), Gaps = 92/523 (17%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
           L    NL+ L L +     S + +I          F    +++   L  N L  +     
Sbjct: 46  LRACANLQVLILKS-----SRINTIE------GDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNN-LYGVPPWCLGNMTSLQVLN 121
             ++SLK L+L  +      +        +LQ L + +      +       +TSL  L 
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY--- 178
           I +  L  N  S  LK ++ I  L L  +     +        S+++  +  +  +    
Sbjct: 155 IKALSLR-NYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQ 212

Query: 179 ----AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRG-----EF 229
                  E  S   K      +L+  S     K L +  +L  V      L G       
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 230 PNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR-----RHLTYLDVSDNFFQVHIPVG--- 281
            + +     K++T+     ++   +     +        +  + V ++     +P     
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331

Query: 282 NMKSLSVLDLSKNRL--IGKIPERLAMGCFSLRYLVLSNNKMK-----GHIFSKKINLTN 334
           ++KSL  LDLS+N +               SL+ LVLS N ++     G I      L N
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL---TLKN 388

Query: 335 LWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE 394
           L  L +  N     +P+S         L LS   +   +                     
Sbjct: 389 LTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKT------------------- 427

Query: 395 GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP 454
                  C    L++LD+S  N   S               L  +  L +S NKL   +P
Sbjct: 428 -------CIPQTLEVLDVS-NNNLDSFSL-----------FLPRLQELYISRNKLK-TLP 467

Query: 455 LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
                   +  + +S N+L  +    F  L   + + L  N  
Sbjct: 468 -DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (294), Expect = 8e-28
 Identities = 64/461 (13%), Positives = 137/461 (29%), Gaps = 71/461 (15%)

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126
           +  +    +     T +  GL     ++ L +  N +  +    L    +LQVL + S++
Sbjct: 6   ASGVCDGRSRSF--TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 127 LTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSL 186
           +   I       L S++ L LS+N+    +S       S+LK  +   N           
Sbjct: 62  IN-TIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPY--------- 110

Query: 187 TPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQV 246
                           +       +  +L+ + + ++    E         T L  L   
Sbjct: 111 --------------QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 247 NNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAM 306
              L                        +      +++ +  L L  +     + E  A 
Sbjct: 157 ALSLRNY----------------QSQSLK------SIRDIHHLTLHLSE-SAFLLEIFAD 193

Query: 307 GCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSD 366
              S+RYL L +  +    FS          ++           ES +         L  
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 367 NHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN 426
           + +         + +++       +  +    +   +   ++ L I +  +F  L + + 
Sbjct: 254 SEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY- 306

Query: 427 PFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST---FSN 483
                    L  +  + +  +K+         +L  +  L++S N +    L        
Sbjct: 307 -------SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 484 LKQTESLDLSYNKLT--GKIPPQLVELNALAVFSVAHNKLS 522
               ++L LS N L    K    L+ L  L    ++ N   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 8e-18
 Identities = 63/354 (17%), Positives = 124/354 (35%), Gaps = 53/354 (14%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTS 67
           L ++  LE    + + F  S L    V  P     F G    D +      L++++ +  
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF--NELLKLLRYILE 252

Query: 68  LKLLSLSNSRLNG----------TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSL 117
           L  +   +  LNG           + + G  E V ++ LH+    L+         +  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 118 QVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ--IPISLGPLYNHSNLKIFDSENN 175
           + + + ++++   +     +HLKS++ L LS N        +        +L+      N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 176 QIYA-QTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLS 234
            + + Q     L     L S+ +S  +    P        ++ +NLS             
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS------------ 419

Query: 235 ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKN 294
                          +  +        + L  LDVS+N       +  +  L  L +S+N
Sbjct: 420 -------------TGIRVV---KTCIPQTLEVLDVSNNNLD-SFSL-FLPRLQELYISRN 461

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI--NLTNLWRLQLDGNHFI 346
           +L   +P+        L  + +S N++K       I   LT+L ++ L  N + 
Sbjct: 462 KLK-TLPDASLFP--VLLVMKISRNQLK--SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 32/308 (10%)

Query: 4   FLIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIK 63
               +  L    ++  D SF  +  L    +    +   F           + +   V+ 
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV--EFDDCTLNGLGDFNPSESDVVS 278

Query: 64  SMTSLKLLSLSNSRLNG----TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV 119
            +  ++ +++    +        L         ++ + V+++ ++ VP     ++ SL+ 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 120 LNISSNQLT--GNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQ 176
           L++S N +      +S       S+Q L LS N+ + +  +   L    NL   D   N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 177 IYAQTESHSLTPKFQ----LNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
                  H +    Q    +  + LS          +     L+ +++S+ NL       
Sbjct: 399 F------HPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDS----- 445

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVL 289
            S    +LQ L    N L  +          L  + +S N  +  +P G    + SL  +
Sbjct: 446 FSLFLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLK-SVPDGIFDRLTSLQKI 502

Query: 290 DLSKNRLI 297
            L  N   
Sbjct: 503 WLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 42/243 (17%)

Query: 285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG---HIFSKKINLTNLWRLQLD 341
           +  V D         IP  L     +++ L LS NK+               NL  L L 
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILK 58

Query: 342 GNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL-EGPIPME 400
            +       ++  +      L LSDNHLS     W G LS  + + +  N      +   
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNL 460
           F  L  LQ L I     F  +      F+                              L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRR--IDFA-----------------------------GL 147

Query: 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK 520
           T ++ L +    L      +  +++    L L  ++    +      L+++    +    
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 521 LSG 523
           L+ 
Sbjct: 208 LAR 210

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 6e-29
 Identities = 66/452 (14%), Positives = 148/452 (32%), Gaps = 71/452 (15%)

Query: 61  VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
           + ++    K+  +++S L    L        +++EL +  N L  +    L   T L++L
Sbjct: 5   IKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ 180
           N+SSN L     +  L+ L +++ L L+NNY Q    L       +++   + NN I   
Sbjct: 64  NLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ---ELLVG---PSIETLHAANNNI--- 111

Query: 181 TESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240
                       + +  S G G             K++ L++  +     +      +++
Sbjct: 112 ------------SRVSCSRGQG------------KKNIYLANNKIT-MLRDLDEGCRSRV 146

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKI 300
           Q L    N               +  ++ ++          +  +L  L+L  N +   +
Sbjct: 147 QYLDLKLN--------------EIDTVNFAELA-------ASSDTLEHLNLQYNFIY-DV 184

Query: 301 PERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG 360
             ++      L+ L LS+NK+   +  +  +   +  + L  N  +  I ++L       
Sbjct: 185 KGQVVFA--KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240

Query: 361 GLYLSDNHLS-GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG 419
              L  N    G +  +       + V      ++        +     +          
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYG-AYCCE 297

Query: 420 SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS 479
            LP+ F    I   +  +++     S  +    +     N  R   ++    +   +I  
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETE---RLECERENQARQREIDALKEQYRTVIDQ 354

Query: 480 TFSNLKQTESLDLSYNKLTGKIPPQLVELNAL 511
                +   +L+     L  ++         L
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 6e-23
 Identities = 65/480 (13%), Positives = 143/480 (29%), Gaps = 62/480 (12%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           +  + L+       +S  ++K L LS + L+  I    L  F  L+ L++  N LY    
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168
             L ++++L+ L++++N +        L    SI+ L  +NN     IS          K
Sbjct: 76  --LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN----ISRVSCSRGQGKK 123

Query: 169 IFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGE 228
                NN+I                 +                +  +++++L    +   
Sbjct: 124 NIYLANNKI---------------TMLR---------DLDEGCRSRVQYLDLKLNEIDTV 159

Query: 229 FPNWLSENNTKLQTLVQVNNYLSGIFQMPKHA-RRHLTYLDVSDNFFQ-VHIPVGNMKSL 286
               L+ ++  L+ L    N++  +           L  LD+S N    +     +   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216

Query: 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI 346
           + + L  N+L+  I + L     +L +  L  N        +     N     +      
Sbjct: 217 TWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK 273

Query: 347 GEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG----PIPMEFC 402
               ++   C +    +            +   L   +         +G     +  E  
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 403 QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR 462
                + +D  K+     +                +   L+     L  ++         
Sbjct: 334 NQARQREIDALKEQYRTVIDQVT--------LRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
           +            L  +T           +        +  Q V+ NA+  + +  +K +
Sbjct: 386 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 28/174 (16%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ 408
           I E   N N +    ++D+ L   +     +    +++ +  N L      +      L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 409 ILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV 468
           +L++S  N+        +         L+++  LDL+ N +       +     I TL+ 
Sbjct: 62  LLNLS-SNVLYETLDLES---------LSTLRTLDLNNNYVQ-----ELLVGPSIETLHA 106

Query: 469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
           ++N ++ +  S     K   ++ L+ NK+T          + +    +  N++ 
Sbjct: 107 ANNNISRVSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 25/67 (37%)

Query: 457 IGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSV 516
             N  R     V+ + L   + S   +    + LDLS N L+      L     L + ++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 517 AHNKLSG 523
           + N L  
Sbjct: 66  SSNVLYE 72

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (297), Expect = 1e-28
 Identities = 85/452 (18%), Positives = 155/452 (34%), Gaps = 78/452 (17%)

Query: 64  SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123
           S T L+     +S L  T +           E +   +      P   G    + V  + 
Sbjct: 9   SNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQIYAQTE 182
                           +   EL+L+N     +P          +L+   +  N +     
Sbjct: 67  DCLD------------RQAHELELNNLGLSSLPELPP------HLESLVASCNSL----- 103

Query: 183 SHSLTPKF-QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQ 241
              L      L S+++ + +             L+++ +S+  L  + P    +N++ L+
Sbjct: 104 -TELPELPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLE-KLPE--LQNSSFLK 156

Query: 242 TLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301
            +   NN L  +  +P      L ++   +N  +    + N+  L+ +    N L  K+P
Sbjct: 157 IIDVDNNSLKKLPDLPPS----LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLP 211

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361
           +       SL  +V  NN ++     +  NL  L  +  D N  +  +P+   +      
Sbjct: 212 DLP----LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEA--- 261

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L + DN+L+  +P    +L     + +  N   G +      L +L        N   SL
Sbjct: 262 LNVRDNYLT-DLPELPQSL---TFLDVSENIFSG-LSELPPNLYYLNASS----NEIRSL 312

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF 481
                           S+  L++S NKL  E+P     L R   L  S N L  +     
Sbjct: 313 CDL-----------PPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAEVP-ELP 356

Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVELNALAV 513
            NLK    L + YN L  + P     +  L +
Sbjct: 357 QNLK---QLHVEYNPLR-EFPDIPESVEDLRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (285), Expect = 5e-27
 Identities = 92/496 (18%), Positives = 170/496 (34%), Gaps = 75/496 (15%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALD--KNFLQVI-K 63
           E  N+ +        S +  +            V             L+     L  + +
Sbjct: 29  EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88

Query: 64  SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123
               L+ L  S + L  T L +       L   + +   L  +PP        L+ L +S
Sbjct: 89  LPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVS 139

Query: 124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQIYAQTE 182
           +NQL      P L++   ++ + + NN  + +P          +L+   + NNQ+    E
Sbjct: 140 NNQLE---KLPELQNSSFLKIIDVDNNSLKKLPDLPP------SLEFIAAGNNQLEELPE 190

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQT 242
             +L     L +I   + S    P        L+ +   + N+  E P    +N   L T
Sbjct: 191 LQNLP---FLTAIYADNNSLKKLPDLPLS---LESIVAGN-NILEELPEL--QNLPFLTT 241

Query: 243 LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPE 302
           +   NN L  +  +P      L  L+V DN+    +P    +SL+ LD+S+N     + E
Sbjct: 242 IYADNNLLKTLPDLPPS----LEALNVRDNYLT-DLP-ELPQSLTFLDVSENIFS-GLSE 294

Query: 303 RLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL 362
                  +L YL  S+N+++  +        +L  L +  N  I E+P           L
Sbjct: 295 LPP----NLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKLI-ELPALPPRLER---L 342

Query: 363 YLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP 422
             S NHL+ ++P    NL     + +  N L    P     +  L++      +    +P
Sbjct: 343 IASFNHLA-EVPELPQNLKQ---LHVEYNPLRE-FPDIPESVEDLRMN-----SHLAEVP 392

Query: 423 SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFS 482
                          ++  L +  N L  E P    ++     L ++  ++         
Sbjct: 393 EL-----------PQNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHE 437

Query: 483 NLKQTESLDLSYNKLT 498
              + E     ++   
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (270), Expect = 4e-25
 Identities = 85/473 (17%), Positives = 151/473 (31%), Gaps = 106/473 (22%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
                L L+N  L  + L +      HL+ L    N+L  +P     ++ SL V N +  
Sbjct: 71  RQAHELELNNLGL--SSLPE---LPPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLK 124

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
            L+             ++ L +SNN  +    L  L N S LKI D +NN +        
Sbjct: 125 ALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSL-------- 165

Query: 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ 245
                               P        L+ +   +  L  E P    +N   L  +  
Sbjct: 166 -----------------KKLPDLPPS---LEFIAAGNNQLE-ELPEL--QNLPFLTAIYA 202

Query: 246 VNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLA 305
            NN L  +  +P      L  +   +N  +    + N+  L+ +    N L   +P+   
Sbjct: 203 DNNSLKKLPDLPLS----LESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 306 MGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS 365
               SL  L + +N +   +     +LT L   +   +  + E+P +L        L  S
Sbjct: 258 ----SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG-LSELPPNLYY------LNAS 305

Query: 366 DNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF 425
            N +   +     +L   E++ + NN L   +P    +L   + L  S  N    +P   
Sbjct: 306 SNEIR-SLCDLPPSL---EELNVSNNKLIE-LPALPPRL---ERLIASF-NHLAEVPEL- 355

Query: 426 NPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIH----------------TLNVS 469
                       ++  L +  N L  E P    ++  +                  L+V 
Sbjct: 356 ----------PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404

Query: 470 HNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
            N L           +  E L ++  ++           + L      H+   
Sbjct: 405 TNPLREF----PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 18/104 (17%)

Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNL-------------TRIHTLNVSHNKLTGLILSTFS 482
           + S +    + ++     P   G                + H L +++  L+ L      
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL----PE 88

Query: 483 NLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
                ESL  S N LT ++P     L +L V +     LS   P
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (283), Expect = 2e-27
 Identities = 48/304 (15%), Positives = 99/304 (32%), Gaps = 30/304 (9%)

Query: 219 NLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARR-HLTYLDVSDNFFQVH 277
              + +       W   N+   Q   +    L     + + A +     L++        
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 278 IP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI-NLTN 334
            P     +  L  + +    L+ ++P+ +      L  L L+ N ++       I +L  
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR--ALPASIASLNR 151

Query: 335 LWRLQLDGNHFIGEIPESLSNCNLFGG---------LYLSDNHLSGKIPRWLGNLSVSED 385
           L  L +     + E+PE L++ +  G          L L    +   +P  + NL   + 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS 445
           + + N+ L   +      L  L+ LD+       + P                +  L L 
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP-----IFGG---RAPLKRLILK 261

Query: 446 -CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ 504
            C+ L   +PL I  LT++  L++        + S  + L     + +  +        +
Sbjct: 262 DCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

Query: 505 LVEL 508
            V  
Sbjct: 321 PVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 47/376 (12%), Positives = 108/376 (28%), Gaps = 67/376 (17%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMT 66
             H+ +  ENL    S         ++ +          +                 +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----------SAWRQANSN 56

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126
           + ++ + +   L  T              L +    L   P      ++ LQ + I +  
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAG 115

Query: 127 LTGNISSPP-LKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFD-SENNQIYAQTES 183
           L      P  ++    ++ L L+ N  + +P S+  L   + L+        ++      
Sbjct: 116 LM---ELPDTMQQFAGLETLTLARNPLRALPASIASL---NRLRELSIRACPEL------ 163

Query: 184 HSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL 243
             L              +            +L+ + L    +R   P             
Sbjct: 164 TELPEPL----------ASTDASGEHQGLVNLQSLRLEWTGIR-SLP------------- 199

Query: 244 VQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIP 301
                  + I  +     ++L  L + ++     +   + ++  L  LDL     +   P
Sbjct: 200 -------ASIANL-----QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361
                G   L+ L+L +      +      LT L +L L G   +  +P  ++       
Sbjct: 247 PIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 362 LYLSDNHLSGKIPRWL 377
           + +  + L  ++ +  
Sbjct: 306 ILVPPH-LQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 41/257 (15%), Positives = 77/257 (29%), Gaps = 53/257 (20%)

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
           H    +      L    +  +    + L+      +    ++     H   ++ N  N  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRW-HSAWRQANSNNPQ 59

Query: 337 RLQLDGNHFIGEIPESLSNCNLFG--GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE 394
                G   +    + L +    G   L L    L                         
Sbjct: 60  IETRTGRA-LKATADLLEDATQPGRVALELRSVPLPQ----------------------- 95

Query: 395 GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP 454
              P +  +L+ LQ + I        LP      +++Q      +  L L+ N L   +P
Sbjct: 96  --FPDQAFRLSHLQHMTIDA-AGLMELPD-----TMQQ---FAGLETLTLARNPLR-ALP 143

Query: 455 LRIGNLTRIHTLNVSH-NKLTGL--------ILSTFSNLKQTESLDLSYNKLTGKIPPQL 505
             I +L R+  L++    +LT L               L   +SL L +  +   +P  +
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 506 VELNALAVFSVAHNKLS 522
             L  L    + ++ LS
Sbjct: 203 ANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 38/259 (14%), Positives = 88/259 (33%), Gaps = 53/259 (20%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
              ++ L+ +++  + L    L   + +F  L+ L +  N L  +P   + ++  L+ L+
Sbjct: 100 AFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELS 156

Query: 122 ISS-NQLT------GNISSPP-LKHLKSIQELKLSNNYF-QIPISLGPLYNHSNLKIFDS 172
           I +  +LT       +  +    + L ++Q L+L       +P S+  L    NLK    
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL---QNLKSLKI 213

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
            N+ +                               ++H   L+ ++L        +P  
Sbjct: 214 RNSPL-------------------------SALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 233 LSENNTKLQTL-VQVNNYL----SGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKS 285
                  L+ L ++  + L      I ++       L  LD+        +P  +  + +
Sbjct: 249 FG-GRAPLKRLILKDCSNLLTLPLDIHRL-----TQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 286 LSVLDLSKNRLIGKIPERL 304
             ++ +  +        R 
Sbjct: 303 NCIILVPPHLQAQLDQHRP 321

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (272), Expect = 3e-25
 Identities = 83/469 (17%), Positives = 169/469 (36%), Gaps = 45/469 (9%)

Query: 54  LDKNFLQ-----VIKSMTSLKLLSLSNSRLNGTILDQGLCEF-VHLQELHVDHNNLYGVP 107
           + +N++       I S++ L++L +S++R+    LD  + +F   L+ L + HN L  + 
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKIS 85

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
                   +L+ L++S N            ++  ++ L LS  + +   S+ P+ + +  
Sbjct: 86  ---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNIS 141

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRG 227
           K+          + +   L      +  I+   +      F+         NL   N++ 
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE--FHFILDVSVKTVANLELSNIKC 199

Query: 228 EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLS 287
              +        +   +Q N  LS +          L  ++ + N F   + +    ++ 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNL---------TLNNIETTWNSFIRILQLVWHTTVW 250

Query: 288 VLDLSKNRLIGKIPERLAMGCF----SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN 343
              +S  +L G++  R          +L    + ++             +N+       +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 344 HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE--GPIPMEF 401
                     S  + F  L  S+N L+  +    G+L+  E +I+  N L+    I    
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 402 CQLNFLQILDISKKNIFGSLP--SCFNPFSIKQ-------------GKPLNSMSGLDLSC 446
            Q+  LQ LDIS+ ++        C    S+                     +  LDL  
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS 430

Query: 447 NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
           NK+   IP ++  L  +  LNV+ N+L  +    F  L   + + L  N
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 86/450 (19%), Positives = 151/450 (33%), Gaps = 33/450 (7%)

Query: 92  HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
               L++  N +  +    + +++ L++L IS N++   +     K  + ++ L LS+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 152 FQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILS--HGSGVTFPKFL 209
               IS  P     NLK  D   N   A           QL  + LS  H    +     
Sbjct: 81  LVK-ISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 210 YHQHDLKHVNLSHINLRGEFPNWLSE-NNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLD 268
           +       + L       E P  L + N   L  +   N     I  +      +L   +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 269 VSDNFFQVHIP--------VGNMKSLSVLDLSKNRLIGKIPERL--AMGCFSLRYLVLSN 318
           +                  +     LS L L+          R+   +   ++ Y  +SN
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 319 NKMKGHIFSKKI-----NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI 373
            K++G +  +       +L  L   Q+  + F           +       + +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 374 PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG 433
                 +S    +   NN L   +      L  L+ L +   N    L            
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ-MNQLKELSKIAEMT----- 370

Query: 434 KPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDL 492
             + S+  LD+S N ++ +           + +LN+S N LT  I        + + LDL
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDL 428

Query: 493 SYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
             NK+   IP Q+V+L AL   +VA N+L 
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 72/380 (18%), Positives = 135/380 (35%), Gaps = 30/380 (7%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMT 66
           E  N++ L+ L L  +    S +  IA     + +  +      G   D   LQ      
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKSSVLPIAHLN--ISKVLLVLGETYGEKEDPEGLQDFN-TE 166

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSL------QVL 120
           SL ++  +N   +  ILD  +    +L+  ++          + L  +  L        L
Sbjct: 167 SLHIVFPTNKEFH-FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 121 NISSNQLTGNISSPPLKHL--KSIQELKLSNNYFQIPISLGPL-YNHSNLKIFDSENNQI 177
            +++ + T N     L+ +   ++    +SN   Q  +      Y+ ++LK         
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 178 YAQTESHSLT----PKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWL 233
                  S          + +  +S    V             H++ S+ NL  +     
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSN-NLLTDTVFEN 343

Query: 234 SENNTKLQTLVQVNNYLSGIFQMPK--HARRHLTYLDVSDNFFQVHIPVG---NMKSLSV 288
             + T+L+TL+   N L  + ++ +     + L  LD+S N        G     KSL  
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE 348
           L++S N L   I   L      ++ L L +NK+K  I  + + L  L  L +  N  +  
Sbjct: 404 LNMSSNILTDTIFRCLPP---RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ-LKS 458

Query: 349 IPE-SLSNCNLFGGLYLSDN 367
           +P+           ++L  N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 42/284 (14%), Positives = 95/284 (33%), Gaps = 51/284 (17%)

Query: 277 HIPVGNMKSLSVLDLSKNRL-----------------------IGKIPERLAMGCFSLRY 313
           H+P    +  ++L++S+N +                       I  +   +      L Y
Sbjct: 14  HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 314 LVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL------YLSDN 367
           L LS+NK+            NL  L L  N F     ++L  C  FG +       LS  
Sbjct: 74  LDLSHNKLVKISCHP---TVNLKHLDLSFNAF-----DALPICKEFGNMSQLKFLGLSTT 125

Query: 368 HLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNP 427
           HL       + +L++S+ +++                  LQ  +    +I       F+ 
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKED-----PEGLQDFNTESLHIVFPTNKEFHF 180

Query: 428 FSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTL---------NVSHNKLTGLIL 478
                 K + ++   ++ C     +    +  L ++ T          N+     + + +
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
                        +S  KL G++  +  + +  ++ +++ +++ 
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (273), Expect = 4e-25
 Identities = 70/319 (21%), Positives = 121/319 (37%), Gaps = 56/319 (17%)

Query: 215 LKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFF 274
              +N+    L    P+ L  +   + TLV  +N L+ +   P      L  L+VS N  
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLTSL---PALPP-ELRTLEVSGNQL 93

Query: 275 QVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINL 332
              +P     +  LS+       L              L  L +  N+    + S  +  
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQ----LTSLPVLP 140

Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
             L  L +  N  +  +P   S       L+  +N L+  +P     L   +++ + +N 
Sbjct: 141 PGLQELSVSDNQ-LASLPALPSELCK---LWAYNNQLT-SLPMLPSGL---QELSVSDNQ 192

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
           L   +P    +L  L   +    N   SLP+             + +  L +S N+LT  
Sbjct: 193 LAS-LPTLPSELYKLWAYN----NRLTSLPAL-----------PSGLKELIVSGNRLT-S 235

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALA 512
           +P+    L     L VS N+LT L     S L    SL +  N+LT ++P  L+ L++  
Sbjct: 236 LPVLPSELK---ELMVSGNRLTSL-PMLPSGL---LSLSVYRNQLT-RLPESLIHLSSET 287

Query: 513 VFSVAHNKLSGKTPDWVAQ 531
             ++  N LS +T   + +
Sbjct: 288 TVNLEGNPLSERTLQALRE 306

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (263), Expect = 8e-24
 Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 46/278 (16%)

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERL 304
           +     + + +M          L+V ++     +P      ++ L +  N L   +P   
Sbjct: 23  ESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT-SLPALP 80

Query: 305 AMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYL 364
                 LR L +S N++   +      L  L        H +  +P  L        L++
Sbjct: 81  P----ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH-LPALPSGLCK------LWI 128

Query: 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC 424
             N L+  +P     L   +++ + +N L   +P    +L  L   +    N   SLP  
Sbjct: 129 FGNQLT-SLPVLPPGL---QELSVSDNQLAS-LPALPSELCKLWAYN----NQLTSLPML 179

Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
                       + +  L +S N+L   +P     L +   L   +N+LT L  +  S L
Sbjct: 180 -----------PSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLTSL-PALPSGL 223

Query: 485 KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
           K    L +S N+LT  +P    EL  L    V+ N+L+
Sbjct: 224 K---ELIVSGNRLTS-LPVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 2e-22
 Identities = 67/385 (17%), Positives = 119/385 (30%), Gaps = 107/385 (27%)

Query: 115 TSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSE 173
               VLN+  + LT    + P      I  L + +N    +P           L+  +  
Sbjct: 40  NGNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNLTSLPALPP------ELRTLEVS 89

Query: 174 NNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWL 233
            NQ+                          + P       +L   +             L
Sbjct: 90  GNQL-------------------------TSLPVLPPGLLELSIFSNPL--------THL 116

Query: 234 SENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK 293
               + L  L    N L+ +  +P      L  L VSDN     +P      L  L    
Sbjct: 117 PALPSGLCKLWIFGNQLTSLPVLP----PGLQELSVSDNQLA-SLP-ALPSELCKLWAYN 170

Query: 294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESL 353
           N+L   +P   +     L+ L +S+N+                         +  +P   
Sbjct: 171 NQLT-SLPMLPS----GLQELSVSDNQ-------------------------LASLPTLP 200

Query: 354 SNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDIS 413
           S       L+  +N L+  +P     L   +++I+  N L   +P+   +L  L +    
Sbjct: 201 SELY---KLWAYNNRLT-SLPALPSGL---KELIVSGNRLTS-LPVLPSELKELMVSG-- 250

Query: 414 KKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKL 473
             N   SLP              + +  L +  N+LT  +P  + +L+   T+N+  N L
Sbjct: 251 --NRLTSLPML-----------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 474 TGLILSTFSNLKQTESLDLSYNKLT 498
           +     T   L++  S       + 
Sbjct: 297 SER---TLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 5e-22
 Identities = 71/347 (20%), Positives = 118/347 (34%), Gaps = 51/347 (14%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
               +L++  S L  T L   L    H+  L +  NNL  +P         L+ L +S N
Sbjct: 40  NGNAVLNVGESGL--TTLPDCL--PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN 91

Query: 126 QLTGNISSPP-LKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESH 184
           QLT   S P     L  +           +P         S L       NQ+       
Sbjct: 92  QLT---SLPVLPPGLLELSIFSNPLT--HLPALP------SGLCKLWIFGNQL------T 134

Query: 185 SLTPKF-QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL 243
           SL      L  + +S     + P        L  +   +  L       L    + LQ L
Sbjct: 135 SLPVLPPGLQELSVSDNQLASLPALPSE---LCKLWAYNNQLTS-----LPMLPSGLQEL 186

Query: 244 VQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPER 303
              +N L+ +  +P      L  L   +N     +P      L  L +S NRL   +P  
Sbjct: 187 SVSDNQLASLPTLPSE----LYKLWAYNNRLT-SLP-ALPSGLKELIVSGNRL-TSLPVL 239

Query: 304 LAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY 363
            +     L+ L++S N++     S  +  + L  L +  N  +  +PESL + +    + 
Sbjct: 240 PS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVN 290

Query: 364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQIL 410
           L  N LS +  + L  ++ +     P    +        +   L + 
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.7 bits (243), Expect = 2e-21
 Identities = 71/321 (22%), Positives = 114/321 (35%), Gaps = 48/321 (14%)

Query: 88  CEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL 147
           C       L+V  + L  +P  CL     +  L I  N LT   S P L     ++ L++
Sbjct: 37  CLNNGNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLT---SLPAL--PPELRTLEV 88

Query: 148 SNNYFQ-IPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP 206
           S N    +P+    L     L IF +    + A            L  + +      + P
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPSG--------LCKLWIFGNQLTSLP 137

Query: 207 KFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTY 266
                   L+ +++S   L    P   S    +L  L   NN L+ +  +P      L  
Sbjct: 138 VLPPG---LQELSVSDNQLA-SLPALPS----ELCKLWAYNNQLTSLPMLPS----GLQE 185

Query: 267 LDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
           L VSDN     +P      L  L    NRL   +P   +     L+ L++S N     + 
Sbjct: 186 LSVSDNQLA-SLPTL-PSELYKLWAYNNRLT-SLPALPS----GLKELIVSGN----RLT 234

Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV 386
           S  +  + L  L + GN  +  +P   S       L +  N L+ ++P  L +LS    V
Sbjct: 235 SLPVLPSELKELMVSGN-RLTSLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTV 289

Query: 387 IMPNNHLEGPIPMEFCQLNFL 407
            +  N L         ++   
Sbjct: 290 NLEGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 54  LDKNFLQVI-KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLG 112
           +  N L  +    + LK L +S +RL  T L         L  L V  N L  +P   L 
Sbjct: 228 VSGNRLTSLPVLPSELKELMVSGNRL--TSLPMLPS---GLLSLSVYRNQLTRLPES-LI 281

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNN 150
           +++S   +N+  N L+       L+ L+ I      + 
Sbjct: 282 HLSSETTVNLEGNPLS----ERTLQALREITSAPGYSG 315

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (265), Expect = 3e-24
 Identities = 71/461 (15%), Positives = 158/461 (34%), Gaps = 64/461 (13%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
              + ++ +      S   ++LL+L++ ++   I          +Q+L++  N +  +PP
Sbjct: 58  FKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPP 116

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168
               N+  L VL +  N L+ ++      +   +  L +SNN  +  I        ++L+
Sbjct: 117 HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQ 174

Query: 169 IFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGE 228
                +N++        +                   P        L H N+S+  L   
Sbjct: 175 NLQLSSNRL------THVDLS--------------LIPS-------LFHANVSYNLLS-T 206

Query: 229 FPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSV 288
                      ++ L   +N ++ +          LT L +  N       + N   L  
Sbjct: 207 LA-----IPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 258

Query: 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE 348
           +DLS N  + KI     +    L  L +SNN++   +      +  L  L L  NH +  
Sbjct: 259 VDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLH 315

Query: 349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ 408
           +  +    +    LYL  N +   +   L      +++ + +N  +             +
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-----CNSLRALFR 367

Query: 409 ILDISKKNIFGSLPSCFNPFSIKQG-------KPLNSMSGLDLSCNKLTGEIPLRIGNLT 461
             ++++  +  +   C   + ++ G       KP        ++   +  ++    G  +
Sbjct: 368 --NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425

Query: 462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502
              T+N   +    +       L+  E L+   N+L  ++ 
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.2 bits (247), Expect = 6e-22
 Identities = 55/315 (17%), Positives = 111/315 (35%), Gaps = 36/315 (11%)

Query: 215 LKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFF 274
              V++     +  +  +        + +   N+ +  +      + R +  L+++D   
Sbjct: 29  FYDVHIDMQT-QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 275 QVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GHIFSK 328
           +  I         ++  L +  N  I  +P  +      L  LVL  N +      IF  
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH- 144

Query: 329 KINLTNLWRLQLDGNHFIGEIPES-LSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI 387
             N   L  L +  N+ +  I +           L LS N L+      + +L       
Sbjct: 145 --NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL---FHAN 198

Query: 388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCN 447
           +  N L             ++ LD S            N  ++ +G     ++ L L  N
Sbjct: 199 VSYNLLS-----TLAIPIAVEELDAS-----------HNSINVVRGPVNVELTILKLQHN 242

Query: 448 KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE 507
            LT +    + N   +  +++S+N+L  ++   F  +++ E L +S N+L   +      
Sbjct: 243 NLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

Query: 508 LNALAVFSVAHNKLS 522
           +  L V  ++HN L 
Sbjct: 300 IPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.1 bits (213), Expect = 9e-18
 Identities = 89/498 (17%), Positives = 168/498 (33%), Gaps = 53/498 (10%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
           L +   +E L L++       ++ I          F     +    +  N ++ +     
Sbjct: 71  LDSFRQVELLNLNDLQ-----IEEID------TYAFAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
           +++  L +L L  + L+ ++          L  L + +NNL  +        TSLQ L +
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE 182
           SSN+LT       L  + S+    +S N       L  L     ++  D+ +N I     
Sbjct: 179 SSNRLT----HVDLSLIPSLFHANVSYN------LLSTLAIPIAVEELDASHNSI----- 223

Query: 183 SHSLTPKF--QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240
            + +      +L  + L H +       L +   L  V+LS+  L  +          +L
Sbjct: 224 -NVVRGPVNVELTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELE-KIMYHPFVKMQRL 280

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-VHIPVGNMKSLSVLDLSKNRLIGK 299
           + L   NN L  +    +     L  LD+S N    V         L  L L  N +   
Sbjct: 281 ERLYISNNRLVALNLYGQPIPT-LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI--- 336

Query: 300 IPERLAMGCF-SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNL 358
               L +    +L+ L LS+N       S +    N+ R  +D      +I   L +   
Sbjct: 337 --VTLKLSTHHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 392

Query: 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF 418
                 SD     ++ +++   SV E V            +   Q     I       + 
Sbjct: 393 CKE---SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLI 477
           G+         ++    +  ++   +   +L   +   I  NL R         + +  +
Sbjct: 450 GNEQLEAEVNELRAE--VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNL 507

Query: 478 LSTFSNLKQTESLDLSYN 495
              F++LK+ ++  L   
Sbjct: 508 NKVFTHLKERQAFKLRET 525

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 38/195 (19%), Positives = 77/195 (39%), Gaps = 17/195 (8%)

Query: 331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFG--GLYLSDNHLSGKIPRWLGNLSVSEDVIM 388
                + + +D      ++     +  L     +   ++ +       L +    E + +
Sbjct: 25  YDCVFYDVHIDMQTQ--DVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448
            +  +E      F   + +Q L +   N    LP   + F       +  ++ L L  N 
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPP--HVFQ-----NVPLLTVLVLERND 134

Query: 449 LTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE 507
           L+  +P  I  N  ++ TL++S+N L  +   TF      ++L LS N+LT  +   L  
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL-- 190

Query: 508 LNALAVFSVAHNKLS 522
           + +L   +V++N LS
Sbjct: 191 IPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 46/176 (26%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-- 62
           L  L     +E L   +                                   N + V+  
Sbjct: 204 LSTLAIPIAVEELDASH-----------------------------------NSINVVRG 228

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
                L +L L ++ L  T     L  +  L E+ + +N L  +       M  L+ L I
Sbjct: 229 PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQI 177
           S+N+L     +   + + +++ L LS+N+   +  +         L+    ++N I
Sbjct: 286 SNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQF---DRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 10/113 (8%), Positives = 31/113 (27%), Gaps = 3/113 (2%)

Query: 412 ISKKNIFGSLPSCFNPFSIKQGKP-LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSH 470
           +  +  +   P       I            + +               L     +   +
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 471 NKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ-LVELNALAVFSVAHNKLS 522
           + +  L  +   + +Q E L+L+  ++  +I        + +    +  N + 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 6e-24
 Identities = 76/418 (18%), Positives = 135/418 (32%), Gaps = 76/418 (18%)

Query: 81  TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK 140
             +D  L       ++H+D         +    + + +++   ++ +   + +  L   +
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 69

Query: 141 SIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHG 200
            ++ L L++   +  I          ++      N I                   L   
Sbjct: 70  QVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY-----------------LPPH 111

Query: 201 SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHA 260
                P        L  + L   N     P  +  N  KL TL   NN L  I      A
Sbjct: 112 VFQNVPL-------LTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 261 RRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK 320
              L  L +S N    H+ +  + SL   ++S N  +  +         ++  L  S+N 
Sbjct: 164 TTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNL-LSTLA-----IPIAVEELDASHNS 216

Query: 321 MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNL 380
           +   +    +    L  L+L  N+ + +    L N      + LS N L           
Sbjct: 217 IN--VVRGPV-NVELTILKLQHNN-LTDTA-WLLNYPGLVEVDLSYNELE---------- 261

Query: 381 SVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMS 440
            +                  F ++  L+ L IS  N   +L            +P+ ++ 
Sbjct: 262 KIMYHP--------------FVKMQRLERLYISN-NRLVALNLYG--------QPIPTLK 298

Query: 441 GLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
            LDLS N L   +        R+  L + HN +  L LST   LK   +L LS+N   
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (256), Expect = 1e-23
 Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 47/322 (14%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
              + ++ +      S   ++LL+L++ ++   I          +Q+L++  N +  +PP
Sbjct: 52  FKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168
               N+  L VL +  N L+ ++      +   +  L +SNN  +  I        ++L+
Sbjct: 111 HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQ 168

Query: 169 IFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGE 228
                +N++                       + V           L H N+S+  L   
Sbjct: 169 NLQLSSNRL-----------------------THVDLSLI----PSLFHANVSYNLLS-T 200

Query: 229 FPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSV 288
                      ++ L   +N ++ +          LT L +  N       + N   L  
Sbjct: 201 LA-----IPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 252

Query: 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE 348
           +DLS N  + KI     +    L  L +SNN++   +      +  L  L L  NH +  
Sbjct: 253 VDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLH 309

Query: 349 IPESLSNCNLFGGLYLSDNHLS 370
           +  +    +    LYL  N + 
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (251), Expect = 5e-23
 Identities = 56/326 (17%), Positives = 114/326 (34%), Gaps = 36/326 (11%)

Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRH 263
                L +      V++     +  +  +        + +   N+ +  +      + R 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQT-QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 264 LTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK 320
           +  L+++D   +  I         ++  L +  N  I  +P  +      L  LVL  N 
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND 128

Query: 321 MK---GHIFSKKINLTNLWRLQLDGNHFIGEIP-ESLSNCNLFGGLYLSDNHLSGKIPRW 376
           +      IF    N   L  L +  N+ +  I  ++         L LS N L+      
Sbjct: 129 LSSLPRGIFH---NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

Query: 377 LGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPL 436
           + +L       +  N L             ++ LD S            N  ++ +G   
Sbjct: 185 IPSL---FHANVSYNLLS-----TLAIPIAVEELDAS-----------HNSINVVRGPVN 225

Query: 437 NSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK 496
             ++ L L  N LT +    + N   +  +++S+N+L  ++   F  +++ E L +S N+
Sbjct: 226 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 497 LTGKIPPQLVELNALAVFSVAHNKLS 522
           L   +      +  L V  ++HN L 
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 53/339 (15%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTS 67
           L +   +E L L++                                +D           +
Sbjct: 65  LDSFRQVELLNLNDLQI---------------------------EEIDTYAFA---YAHT 94

Query: 68  LKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQL 127
           ++ L +  + +   +          L  L ++ N+L  +P     N   L  L++S+N L
Sbjct: 95  IQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 128 TGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187
              I     +   S+Q L+LS+N     ++   L    +L   +   N +       +L 
Sbjct: 154 E-RIEDDTFQATTSLQNLQLSSN----RLTHVDLSLIPSLFHANVSYNLL------STLA 202

Query: 188 PKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVN 247
               +  +  SH S       +  +  L  + L H NL  +       N   L  +    
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNNLT-DTAWL--LNYPGLVEVDLSY 257

Query: 248 NYLSGIFQMPKHARRHLTYLDVSDN-FFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAM 306
           N L  I   P    + L  L +S+N    +++    + +L VLDLS N  +  +      
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQP- 315

Query: 307 GCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF 345
               L  L L +N +     S       L  L L  N +
Sbjct: 316 QFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 46/176 (26%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-- 62
           L  L     +E L   +                                   N + V+  
Sbjct: 198 LSTLAIPIAVEELDASH-----------------------------------NSINVVRG 222

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
                L +L L ++ L  T     L  +  L E+ + +N L  +       M  L+ L I
Sbjct: 223 PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQI 177
           S+N+L   ++    + + +++ L LS+N+   +  +         L+    ++N I
Sbjct: 280 SNNRLV-ALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQF---DRLENLYLDHNSI 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 7e-24
 Identities = 63/341 (18%), Positives = 122/341 (35%), Gaps = 47/341 (13%)

Query: 212 QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSD 271
               + V           P  +       + L    N +  + Q    +  HL  L++++
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGIPTE---TRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 272 NFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK---MKGHI 325
           N     +  G   N+ +L  L L  NR +  IP  +  G  +L  L +S NK   +  ++
Sbjct: 66  NIVS-AVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 326 FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG------LYLSDNHLSGKIPRWLGN 379
           F    +L NL  L++  N  +  I         F G      L L   +L+      L +
Sbjct: 124 FQ---DLYNLKSLEVGDND-LVYISH-----RAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF-------------N 426
           L     + + + ++       F +L  L++L+IS      ++                  
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 427 PFS-IKQG--KPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFS 482
             + +     + L  +  L+LS N ++  I   +   L R+  + +   +L  +    F 
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 483 NLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHNKLS 522
            L     L++S N+LT  +   +   +  L    +  N L+
Sbjct: 294 GLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 2e-23
 Identities = 58/308 (18%), Positives = 114/308 (37%), Gaps = 28/308 (9%)

Query: 54  LDKNFLQVIKS-----MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L KN ++ +          L+ L L+ + +   +         +L+ L +  N L  +P 
Sbjct: 39  LGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168
                +++L  L+IS N++   +     + L +++ L++ +N     IS       ++L+
Sbjct: 98  GVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLE 155

Query: 169 IFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP-KFLYHQHDLKHVNLSHINLRG 227
               E   +     + +L+    L  + L H +            + LK + +SH     
Sbjct: 156 QLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 228 EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRH---LTYLDVSDNFFQVHIPVG--- 281
                       L +L   +  L+ +   P  A RH   L +L++S N     I      
Sbjct: 215 TMTPNCL-YGLNLTSLSITHCNLTAV---PYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH 269

Query: 282 NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTNLWRL 338
            +  L  + L   + +  +      G   LR L +S N++      +F    ++ NL  L
Sbjct: 270 ELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH---SVGNLETL 325

Query: 339 QLDGNHFI 346
            LD N   
Sbjct: 326 ILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.3 bits (245), Expect = 7e-22
 Identities = 69/321 (21%), Positives = 126/321 (39%), Gaps = 35/321 (10%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
           T  +LL L  +R+  T+       F HL+EL ++ N +  V P    N+ +L+ L + SN
Sbjct: 32  TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
           +L   I       L ++ +L +S N   I +      +  NLK  +  +N +       +
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDL-VYISHRA 147

Query: 186 LTPKFQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL- 243
            +    L  + L   +  + P   L H H L  + L H+N+     ++  +   +L+ L 
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206

Query: 244 VQVNNYLSGIFQMPKHARR--HLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIG 298
           +    YL  +     +     +LT L ++       +P     ++  L  L+LS N  I 
Sbjct: 207 ISHWPYLDTM---TPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-IS 261

Query: 299 KIPERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSN 355
            I   +      L+ + L   ++     + F     L  L  L + GN  +  + E    
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR---GLNYLRVLNVSGNQ-LTTLEE---- 313

Query: 356 CNLFGG------LYLSDNHLS 370
            ++F        L L  N L+
Sbjct: 314 -SVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 49/298 (16%), Positives = 98/298 (32%), Gaps = 72/298 (24%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
              L+NL  L +                                     N + ++     
Sbjct: 100 FTGLSNLTKLDISE-----------------------------------NKIVILLDYMF 124

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
           + + +LK L + ++ L   I  +       L++L ++  NL  +P   L ++  L VL +
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE 182
               +   I     K L  ++ L++S+  +   ++   LY   NL      +  + A   
Sbjct: 184 RHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTA--- 238

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQT 242
                         + + +       + H   L+ +NLS+ N        +     +LQ 
Sbjct: 239 --------------VPYLA-------VRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQE 276

Query: 243 LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLI 297
           +  V   L+ +         +L  L+VS N     +      ++ +L  L L  N L 
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 63/488 (12%), Positives = 145/488 (29%), Gaps = 56/488 (11%)

Query: 53  ALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLG 112
              ++F            ++ +        + +   +   L  L   ++++  +    + 
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTISEE--QLATLTSLDCHNSSITDMTG--IE 61

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172
            +T L  L  +SN +T    +  L    ++  L   +N     ++   +   + L   + 
Sbjct: 62  KLTGLTKLICTSNNIT----TLDLSQNTNLTYLACDSN----KLTNLDVTPLTKLTYLNC 113

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
           + N++        ++    L  +  +  +       + H   L  ++        +    
Sbjct: 114 DTNKL----TKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDV- 166

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292
                T+L TL    N ++ +        + L  L+   N     + +     L+ LD S
Sbjct: 167 --TPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLDLNQNIQLTFLDCS 220

Query: 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPES 352
            N+L  +I          L Y   S N +     S    L+ L  L       + EI   
Sbjct: 221 SNKLT-EIDVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTD-LLEID-- 270

Query: 353 LSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDI 412
           L++                ++   + + +    +      +     ++  Q   L  L +
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYL 325

Query: 413 SKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNK 472
           +       L    N            +  L      +  +    +G +  ++    +  +
Sbjct: 326 NN-TELTELDVSHNT----------KLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQ 372

Query: 473 LTGLILSTFSNLKQTESLDLSYNKLTG---KIPPQLVELNALAVFSVAHNKLSGKTPDWV 529
              +   T +N   T ++        G    I P    +   A  ++    LS   P   
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

Query: 530 AQFATFNG 537
             F + NG
Sbjct: 433 YTFTSENG 440

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 62/358 (17%), Positives = 106/358 (29%), Gaps = 55/358 (15%)

Query: 6   IELHNLTNLENLTLDN---SFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI 62
           ++L   TNL  L  D+   +   V+ L  +                      D N L  +
Sbjct: 79  LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN-----------------CDTNKLTKL 121

Query: 63  --KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
                  L  L+ + + L  T +D  +     L EL    N         +   T L  L
Sbjct: 122 DVSQNPLLTYLNCARNTL--TEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ 180
           + S N++T       +   K +  L    N     I+   L  +  L   D  +N++   
Sbjct: 176 DCSFNKIT----ELDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSNKL--- 224

Query: 181 TESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240
                +TP  QL     S             +  L  ++    +L          +NT+L
Sbjct: 225 -TEIDVTPLTQLTYFDCSVNPLTELDVSTLSK--LTTLHCIQTDLL----EIDLTHNTQL 277

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKI 300
                          +  +    L  LD         + +     L  L L+   L  ++
Sbjct: 278 IYFQAEGCRKIKELDVTHN--TQLYLLDCQAAGIT-ELDLSQNPKLVYLYLNNTELT-EL 333

Query: 301 PERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNL 358
                     L+ L   N  ++   FS    +  L          I    E+L+N +L
Sbjct: 334 DVS---HNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 44/294 (14%), Positives = 88/294 (29%), Gaps = 83/294 (28%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS 64
            +++   T L  L    +                             T LD      +  
Sbjct: 163 KLDVTPQTQLTTLDCSFNKI---------------------------TELD------VSQ 189

Query: 65  MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
              L  L+   + +  T LD  L + + L  L    N L  +    +  +T L   + S 
Sbjct: 190 NKLLNRLNCDTNNI--TKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSV 242

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQIYAQTES 183
           N LT       +  L  +  L         I ++     +++ L  F +E  +       
Sbjct: 243 NPLT----ELDVSTLSKLTTLHCIQTDLLEIDLT-----HNTQLIYFQAEGCR------- 286

Query: 184 HSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL 243
                  ++  + ++H + +          D +   ++ ++L           N KL  L
Sbjct: 287 -------KIKELDVTHNTQLYLL-------DCQAAGITELDL---------SQNPKLVYL 323

Query: 244 VQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLI 297
              N  L+ +          L  L   +   Q    VG + +L+    ++ + I
Sbjct: 324 YLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTI 374

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 58/349 (16%), Positives = 121/349 (34%), Gaps = 65/349 (18%)

Query: 61  VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
           + ++    K+  +++S L    L        +++EL +  N L  +    L   T L++L
Sbjct: 5   IKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ 180
           N+SSN L     +  L+ L +++ L L+NNY Q    L       +++   + NN I   
Sbjct: 64  NLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ---ELLVG---PSIETLHAANNNI--- 111

Query: 181 TESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240
                       + +  S G G             K++ L++  +     +      +++
Sbjct: 112 ------------SRVSCSRGQG------------KKNIYLANNKIT-MLRDLDEGCRSRV 146

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKI 300
           Q L    N               +  ++ ++          +  +L  L+L  N +   +
Sbjct: 147 QYLDLKLN--------------EIDTVNFAELA-------ASSDTLEHLNLQYNFIY-DV 184

Query: 301 PERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG 360
             ++      L+ L LS+NK+   +  +  +   +  + L  N  +  I ++L       
Sbjct: 185 KGQVVFA--KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLE 240

Query: 361 GLYLSDNHLS-GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ 408
              L  N    G +  +       + V             E C +  L 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 49/294 (16%), Positives = 103/294 (35%), Gaps = 29/294 (9%)

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVL 289
           + +N  + +     ++ L       + +  ++  LD+S N     I          L +L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349
           +LS N  + +  +  ++   +LR L L+NN        + +   ++  L    N+ I  +
Sbjct: 64  NLSSNV-LYETLDLESLS--TLRTLDLNNNY-----VQELLVGPSIETLHAANNN-ISRV 114

Query: 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG-PIPMEFCQLNFLQ 408
             S         +YL++N ++       G  S  + + +  N ++           + L+
Sbjct: 115 SCSRGQ-GK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 409 ILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV 468
            L++    I+           +K       +  LDLS NKL   +     +   +  +++
Sbjct: 173 HLNLQYNFIY----------DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
            +NKL  +        +  E  DL  N                 V +VA   + 
Sbjct: 222 RNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 59/371 (15%), Positives = 118/371 (31%), Gaps = 70/371 (18%)

Query: 9   HNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSL 68
            N    +   + +S                                  +  Q   S  ++
Sbjct: 7   QNGNRYKIEKVTDSSL---------------------------KQALASLRQ---SAWNV 36

Query: 69  KLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT 128
           K L LS + L+  I    L  F  L+ L++  N LY      L ++++L+ L++++N + 
Sbjct: 37  KELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

Query: 129 GNISSPPLKHLKSIQELKLSNNYF-QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT 187
                  L    SI+ L  +NN   ++  S G        K     NN+I          
Sbjct: 94  E------LLVGPSIETLHAANNNISRVSCSRGQ-----GKKNIYLANNKI-TMLRDLDEG 141

Query: 188 PKFQLNSIILSH--GSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ 245
            + ++  + L       V F +       L+H+NL +  +  +    +     KL+TL  
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDL 198

Query: 246 VNNYLS----GIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGK 299
            +N L+                +T++ + +N     I   +   ++L   DL  N     
Sbjct: 199 SSNKLAFMGPEFQSAAG-----VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 300 IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF 359
                      ++ +     K       ++  +  L      G +   ++P         
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY---GAYCCEDLPAPF----AD 305

Query: 360 GGLYLSDNHLS 370
             + L  +H  
Sbjct: 306 RLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 8e-15
 Identities = 42/282 (14%), Positives = 94/282 (33%), Gaps = 49/282 (17%)

Query: 7   ELHNLTNLENLTLDN-------SFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFL 59
           +L   T LE L L +           +S L+++                     L+ N++
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLD--------------------LNNNYV 92

Query: 60  QVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV 119
           Q +    S++ L  +N+ +  + +          + +++ +N +  +     G  + +Q 
Sbjct: 93  QELLVGPSIETLHAANNNI--SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA 179
           L++  N++     +       +++ L L  N+      +      + LK  D  +N++  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL-- 203

Query: 180 QTESHSLTPKF----QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSH-----INLRGEFP 230
                 + P+F     +  I L +   V   K L    +L+H +L         LR  F 
Sbjct: 204 ----AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 231 NWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDN 272
                     QT+ ++         +P          +    
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 28/174 (16%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ 408
           I E   N N +    ++D+ L   +     +    +++ +  N L      +      L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 409 ILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV 468
           +L++S  N+        +         L+++  LDL+ N +       +     I TL+ 
Sbjct: 62  LLNLS-SNVLYETLDLES---------LSTLRTLDLNNNYVQ-----ELLVGPSIETLHA 106

Query: 469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
           ++N ++ +  S     K   ++ L+ NK+T          + +    +  N++ 
Sbjct: 107 ANNNISRVSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.1 bits (239), Expect = 5e-21
 Identities = 84/484 (17%), Positives = 153/484 (31%), Gaps = 96/484 (19%)

Query: 61  VIKSMTSLKLLSLSNSRLNGTILDQGLCEF-VHLQELHVDHNNLYGVPPWCLGNMTSLQV 119
            I  ++ L++L LS++R+    LD  +  F   L+ L V HN L  +       M SL+ 
Sbjct: 71  DISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISC---CPMASLRH 125

Query: 120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-------------------------- 153
           L++S N            +L  +  L LS   F+                          
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 154 -IPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYH- 211
               SL          +F   +        S +     QL++I L+  +      FL   
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 212 QHDLKHVNLSHINLRGEFPNWLSE----NNTKLQTLVQVNNYLSGI-----FQMPKHARR 262
                 +N++  ++   +   +          ++ L   N  ++       F   + A +
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 263 HLTYLDVSDNFFQVHIPVG--NMKSLSVLDLSKNRLIGKIPERLAMGCF----SLRYLVL 316
            L    V +  F             +++  LS +         + M C     S  +L  
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-----PFIHMVCPPSPSSFTFLNF 360

Query: 317 SNNKMKGHIFSKKINLTNLWRLQLDGNHF-----IGEIPESLSNCNLFGGLYLSDNHLSG 371
           + N     +F     L  L  L L  N       +  + +++S+      L   D  L  
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS------LETLDVSL-- 412

Query: 372 KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK 431
                             N+               + +L++S   + GS+  C  P    
Sbjct: 413 ------------------NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP---- 450

Query: 432 QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLD 491
                  +  LDL  N++   IP  + +L  +  LNV+ N+L  +    F  L   + + 
Sbjct: 451 ------KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 492 LSYN 495
           L  N
Sbjct: 504 LHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 69/464 (14%), Positives = 134/464 (28%), Gaps = 81/464 (17%)

Query: 66  TSLKLLSLSN---SRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
              K LSLS    S L    +         L+ L + HN +  +          L+ L++
Sbjct: 52  PRTKALSLSQNSISELRMPDISF----LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE 182
           S N+L     +     + S++ L LS N F +        N + L        +      
Sbjct: 108 SHNRLQ----NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF----- 158

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINL-RGEFPNWLSENNTKLQ 241
                               +      +       ++L   ++  GE  +    N T L 
Sbjct: 159 ------------------RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 242 TLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301
            +   N+  S    M  +A  HL   ++  N               ++        G   
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ---------RLMTFLSELTRG--- 248

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361
                   +L  + L + +       K         ++    +       ++ N  +   
Sbjct: 249 -------PTLLNVTLQHIETTWKCSVKLFQFFWPRPVE----YL------NIYNLTITER 291

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           +   +   S    + L    V       N          +     + I  +S  +     
Sbjct: 292 IDREEFTYSETALKSLMIEHVK------NQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGL--ILS 479
             C            +S + L+ + N  T  +      L R+ TL +  N L     +  
Sbjct: 346 MVCPPS--------PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

Query: 480 TFSNLKQTESLDLSYNKLTGKIPPQLVEL-NALAVFSVAHNKLS 522
              N+   E+LD+S N L      +      ++ V +++ N L+
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 51/385 (13%), Positives = 105/385 (27%), Gaps = 78/385 (20%)

Query: 8   LHNLTNLENLTLD-NSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMT 66
           ++ L +L+   +  N      L+  ++          +  + ++ T      L       
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 67  SLKLLSLSNSRLNG----TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
            ++ L++ N  +                  L   HV +                + +  +
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE 182
           S +     I         S   L  + N F              L+    + N +     
Sbjct: 337 SISDTP-FIHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGL----- 389

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQT 242
                                 F K      ++  +    +                   
Sbjct: 390 --------------------KNFFKVALMTKNMSSLETLDV------------------- 410

Query: 243 LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPE 302
              +N+  S  +         +  L++S N     +       + VLDL  NR+      
Sbjct: 411 --SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-----M 463

Query: 303 RLAMGCF---SLRYLVLSNNKMK---GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNC 356
            +        +L+ L +++N++K     +F     LT+L  + L  N +          C
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPWD---------C 511

Query: 357 NLFGGLYLSD--NHLSGKIPRWLGN 379
              G  YLS+  N  SG +    G+
Sbjct: 512 TCPGIRYLSEWINKHSGVVRNSAGS 536

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 57/300 (19%), Positives = 98/300 (32%), Gaps = 40/300 (13%)

Query: 3   SFLIELHNLTNLENLTLDN-SFFHVSLLQSIAVFGPWMVQCF-IGFRAMDGTALDKNFLQ 60
           +FL EL     L N+TL +        ++    F P  V+   I    +      + F  
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 61  VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
              ++ SL +  + N        +     F  +    +  ++   +   C  + +S   L
Sbjct: 300 SETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQIYA 179
           N + N  T +        LK +Q L L  N  +          N S+L+  D   N    
Sbjct: 359 NFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS--- 414

Query: 180 QTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTK 239
                            L+  +   + +       +  +NLS   L G     L      
Sbjct: 415 -----------------LNSHA---YDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--- 451

Query: 240 LQTLVQVNNYLSGIFQMPKHARR--HLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKN 294
           ++ L   NN +  I   PK       L  L+V+ N  +  +P G    + SL  + L  N
Sbjct: 452 VKVLDLHNNRIMSI---PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.0 bits (236), Expect = 1e-20
 Identities = 51/307 (16%), Positives = 97/307 (31%), Gaps = 67/307 (21%)

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSD---NFFQVHIPVGNMKSLSVL 289
           L  NN    +     N +SG +     A        +     N     +    +   S L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI--NLTNLWRLQLDGNHFIG 347
            L++  L   +P+ L      +  L ++ N +        +     +L  L    N  + 
Sbjct: 65  QLNRLNL-SSLPDNL---PPQITVLEITQNALI------SLPELPASLEYLDACDNR-LS 113

Query: 348 EIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFL 407
            +PE  ++      L + +N L+  +P     L                           
Sbjct: 114 TLPELPASLK---HLDVDNNQLT-MLPELPALL--------------------------- 142

Query: 408 QILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN 467
           + ++    N    LP               S+  L +  N+LT  +P    +L     L+
Sbjct: 143 EYINADN-NQLTMLPEL-----------PTSLEVLSVRNNQLT-FLPELPESLEA---LD 186

Query: 468 VSHNKLTGL---ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK 524
           VS N L  L    +    + +         N++T  IP  ++ L+      +  N LS +
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 525 TPDWVAQ 531
             + ++Q
Sbjct: 246 IRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 2e-19
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 32/288 (11%)

Query: 219 NLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR-RHLTYLDVSDNFFQVH 277
           N  +  + G + +       K +         +    + K       + L ++       
Sbjct: 16  NSFYNTISGTYAD-YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-S 73

Query: 278 IPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR 337
           +P      ++VL++++N LI  +PE  A    SL YL   +N+    + +      +L  
Sbjct: 74  LPDNLPPQITVLEITQNALI-SLPELPA----SLEYLDACDNR----LSTLPELPASLKH 124

Query: 338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI 397
           L +D N     +PE  +       +   +N L+  +P    +L   E + + NN L   +
Sbjct: 125 LDVDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTSL---EVLSVRNNQLTF-L 175

Query: 398 PMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSG-LDLSCNKLTGEIPLR 456
           P        L+ LD+S  N+  SLP+        +               N++T  IP  
Sbjct: 176 P---ELPESLEALDVST-NLLESLPA-----VPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 457 IGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ 504
           I +L    T+ +  N L+  I  + S               +     Q
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 51/305 (16%), Positives = 99/305 (32%), Gaps = 54/305 (17%)

Query: 100 HNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISL 158
           +N + G            +   +        +S      +    EL+L+      +P +L
Sbjct: 19  YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL 78

Query: 159 GPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHV 218
            P      + + +   N +                         ++ P+       L+++
Sbjct: 79  PP-----QITVLEITQNAL-------------------------ISLPELP---ASLEYL 105

Query: 219 NLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHI 278
           +     L    P   +     L+ L   NN L+ + ++P      L Y++  +N     +
Sbjct: 106 DACDNRLS-TLPELPA----SLKHLDVDNNQLTMLPELP----ALLEYINADNNQLT-ML 155

Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG---HIFSKKINLTNL 335
           P     SL VL +  N+L   +PE       SL  L +S N ++           +    
Sbjct: 156 PE-LPTSLEVLSVRNNQL-TFLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETE 209

Query: 336 WRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG 395
              +   N  I  IPE++ + +    + L DN LS +I   L   +   D   P  +   
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 396 PIPME 400
               +
Sbjct: 269 SDGQQ 273

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.3 bits (232), Expect = 3e-20
 Identities = 77/428 (17%), Positives = 136/428 (31%), Gaps = 75/428 (17%)

Query: 91  VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNN 150
            H+  + +  N++  +       +  LQ L +        I +   + L S+  LKL  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 151 YFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLY 210
            F   +  G     +NL++                      L+  +LS      F     
Sbjct: 90  QFLQ-LETGAFNGLANLEVLTLTQCN---------------LDGAVLSGNF---FKPL-- 128

Query: 211 HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLS----GIFQMPKHARRHLTY 266
               L+ + L   N++   P     N  +   L    N +               +H T 
Sbjct: 129 --TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL--NFQGKHFTL 184

Query: 267 LDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGH-- 324
           L +S                ++ D+++  L G           S+  L LS N  K    
Sbjct: 185 LRLSSI--------------TLQDMNEYWL-GWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 325 -IFSKKINLTNLWRLQLDGNHFIGE-----IPESLSNCNLFGG-------LYLSDNHLS- 370
             F   I  T +  L L  ++ +G        +   N    G          LS + +  
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289

Query: 371 --GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPF 428
               +     +L   E + +  N +       F  L  L  L++S+ N  GS+ S    F
Sbjct: 290 LLKSVFSHFTDL---EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDS--RMF 343

Query: 429 SIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQT 487
                + L+ +  LDLS N +   +  +    L  +  L +  N+L  +    F  L   
Sbjct: 344 -----ENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397

Query: 488 ESLDLSYN 495
           + + L  N
Sbjct: 398 QKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 67/360 (18%), Positives = 122/360 (33%), Gaps = 52/360 (14%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
              L +L+ L ++     + +              F G  ++    LD N    +     
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVI----------RNNTFRGLSSLIILKLDYNQFLQLETGAF 99

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGL-CEFVHLQELHVDHNNLYGVPPWCL-GNMTSLQVL 120
             + +L++L+L+   L+G +L          L+ L +  NN+  + P     NM    VL
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQI---------PISLGPLYNHSNLKIFD 171
           +++ N++  +I    L + +      L  +   +             G  + ++++   D
Sbjct: 160 DLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 172 SENNQIYAQTES--HSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEF 229
              N                 ++ S+ILS+   +       H +     N +   L    
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM--GSSFGHTNFKDPDNFTFKGLEASG 276

Query: 230 PNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSL 286
                 + +K+  L      L  +F         L  L ++ N     I       +  L
Sbjct: 277 VKTCDLSKSKIFAL------LKSVFSHFT----DLEQLTLAQNEIN-KIDDNAFWGLTHL 325

Query: 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTNLWRLQLDGN 343
             L+LS+N L G I  R+      L  L LS N ++      F     L NL  L LD N
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG---LPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 54/312 (17%), Positives = 109/312 (34%), Gaps = 56/312 (17%)

Query: 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKN 294
             +  +    N ++ + +      + L +L V      + I       + SL +L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI--NLTNLWRLQLDGNHFIGEIPES 352
           +   ++      G  +L  L L+   + G + S      LT+L  L L  N+      + 
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----KK 143

Query: 353 LSNCNLFGGL------YLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNF 406
           +   + F  +       L+ N +           S+ E+ ++              +L+ 
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVK----------SICEEDLLNFQGKH----FTLLRLSS 189

Query: 407 LQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI---GNLTRI 463
           + + D+++  +      C NPF         S++ LDLS N     +  R       T+I
Sbjct: 190 ITLQDMNEYWL--GWEKCGNPFK------NTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 464 HTLN----------VSHNKLTGLILSTFSNLK--QTESLDLSYNKLTGKIPPQL-VELNA 510
            +L             H         TF  L+    ++ DLS +K+   +   +      
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTD 300

Query: 511 LAVFSVAHNKLS 522
           L   ++A N+++
Sbjct: 301 LEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 12/179 (6%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSI--AVFGPWMVQCFIGFRAMDGTALDKNFLQVIK-- 63
               T++  L L  + F  S+ +    A+ G  +    +      G++      +     
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 64  -----SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
                  + +K   LS S++   +L      F  L++L +  N +  +       +T L 
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
            LN+S N L  +I S   ++L  ++ L LS N+ +  +         NLK    + NQ+
Sbjct: 327 KLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQL 383

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 62/284 (21%), Positives = 108/284 (38%), Gaps = 33/284 (11%)

Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK-- 320
           HL  +  SD   +  +P       ++LDL  N+ I +I +       +L  L+L NNK  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 321 -MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL---YLSDNHLSGKIPRW 376
            +    F+    L  L RL L  N  + E+PE      +   L    + +N ++      
Sbjct: 90  KISPGAFA---PLVKLERLYLSKNQ-LKELPE-----KMPKTLQELRVHENEITKVRKSV 140

Query: 377 LGNLSVSEDVIMPNNHL-EGPIPME-FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGK 434
              L+    V +  N L    I    F  +  L  + I+  NI  ++P            
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPP----- 192

Query: 435 PLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS 493
              S++ L L  NK+T ++       L  +  L +S N ++ +   + +N      L L+
Sbjct: 193 ---SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 494 YNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNG 537
            NKL  K+P  L +   + V  + +N +S    +          
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 55/276 (19%), Positives = 102/276 (36%), Gaps = 37/276 (13%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L  N +  I       +  L+ L LS ++L    L + +     LQEL V  N +  V  
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQL--KELPEKM--PKTLQELRVHENEITKVRK 138

Query: 109 WCLGNMTSLQVLNISSNQLT-GNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSN 166
                +  + V+ + +N L    I +   + +K +  +++++     IP  L P     +
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-P----PS 193

Query: 167 LKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINL 225
           L     + N+I  + ++ SL     L  + LS  S        L +   L+ ++L++  L
Sbjct: 194 LTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 226 RGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKS 285
             + P  L+ ++  +Q +   NN +S I                  N F          S
Sbjct: 253 V-KVPGGLA-DHKYIQVVYLHNNNISAI----------------GSNDFCPPGYNTKKAS 294

Query: 286 LSVLDLSKNRL-IGKIPERLAMGCFSLRYLVLSNNK 320
            S + L  N +   +I        +    + L N K
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 62/332 (18%), Positives = 119/332 (35%), Gaps = 58/332 (17%)

Query: 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF 273
            L+ V  S + L  + P  L  +      L   NN ++ I        ++L  L + +N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 274 FQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCF-SLRYLVLSNNKMK---GHIF 326
               I  G    +  L  L LSKN+L     + L      +L+ L +  N++      +F
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQL-----KELPEKMPKTLQELRVHENEITKVRKSVF 141

Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG------LYLSDNHLSGKIPRW---- 376
           +    L  +  ++L  N     +  S      F G      + ++D +++  IP+     
Sbjct: 142 N---GLNQMIVVELGTNP----LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS 193

Query: 377 LGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPL 436
           L  L +        N +          LN L  L +S  +I     S  +  S+      
Sbjct: 194 LTELHLD------GNKITKVDAASLKGLNNLAKLGLSFNSI-----SAVDNGSLAN---T 239

Query: 437 NSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF------SNLKQTESL 490
             +  L L+ NKL  ++P  + +   I  + + +N ++ +  + F      +       +
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 491 DLSYNKLT-GKIPPQL-VELNALAVFSVAHNK 520
            L  N +   +I P     +   A   + + K
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 54/291 (18%), Positives = 106/291 (36%), Gaps = 26/291 (8%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
               LL L N+++   I D       +L  L + +N +  + P     +  L+ L +S N
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT-ESH 184
           QL       P K  K++QEL++  N     +        + + + +   N + +   E+ 
Sbjct: 111 QLK----ELPEKMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 185 SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV 244
           +     +L+ I ++  +  T P+ L     L  ++L    +  +      +    L  L 
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAKLG 222

Query: 245 QVNNYLSGIFQMPKHARR---HLTYLDVSDNFFQVHIPVG--NMKSLSVLDLSKNRL--I 297
              N +S +      +     HL  L +++N     +P G  + K + V+ L  N +  I
Sbjct: 223 LSFNSISAV---DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 298 GK---IPERLAMGCFSLRYLVLSNNKMKGHIFSKKI--NLTNLWRLQLDGN 343
           G     P        S   + L +N ++           +     +QL   
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 39/150 (26%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTS 67
           L  L NL  L L       + + ++                             + +   
Sbjct: 212 LKGLNNLAKLGLSF-----NSISAVDN-------------------------GSLANTPH 241

Query: 68  LKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGV------PPWCLGNMTSLQVLN 121
           L+ L L+N++L    +  GL +  ++Q +++ +NN+  +      PP       S   ++
Sbjct: 242 LRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 122 ISSNQLT-GNISSPPLKHLKSIQELKLSNN 150
           + SN +    I     + +     ++L N 
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 62/275 (22%), Positives = 101/275 (36%), Gaps = 46/275 (16%)

Query: 252 GIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGC 308
           G+ ++P+    +  YL++ +N  Q  I      ++  L VL L +N  I +I      G 
Sbjct: 65  GLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGL 122

Query: 309 FSLRYLVLSNNKMKG---HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS 365
            SL  L L +N +       F     L+ L  L L  N  I  IP        F  +   
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNP-IESIPSYA-----FNRV--- 170

Query: 366 DNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF 425
                      L  L + E        LE      F  L  L+ L++   NI        
Sbjct: 171 ---------PSLMRLDLGE-----LKKLEYISEGAFEGLFNLKYLNLGMCNIK------- 209

Query: 426 NPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK 485
               +    PL  +  L++S N      P     L+ +  L V +++++ +  + F  L 
Sbjct: 210 ---DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 486 QTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHN 519
               L+L++N L+  +P  L   L  L    + HN
Sbjct: 267 SLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 56/285 (19%), Positives = 97/285 (34%), Gaps = 66/285 (23%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
           ++ + L+L  + +   I         HL+ L +  N++  +       + SL  L +  N
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFD-SENNQIYAQTESH 184
            LT  I S   ++L  ++EL L NN  +  I         +L   D  E  ++       
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEY----- 186

Query: 185 SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV 244
                       +S G+            +LK++NL   N+              +  L 
Sbjct: 187 ------------ISEGA-------FEGLFNLKYLNLGMCNI------------KDMPNLT 215

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIP 301
            +                 L  L++S N F   I  G    + SL  L +  ++ +  I 
Sbjct: 216 PLVG---------------LEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQ-VSLIE 258

Query: 302 ERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTNLWRLQLDGN 343
                G  SL  L L++N +      +F+    L  L  L L  N
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFT---PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 22/176 (12%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS--- 64
             +L +LE L L       + ++ I       V  F G  +++   L  N+L VI S   
Sbjct: 95  FRHLHHLEVLQLGR-----NSIRQI------EVGAFNGLASLNTLELFDNWLTVIPSGAF 143

Query: 65  --MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNN-LYGVPPWCLGNMTSLQVLN 121
             ++ L+ L L N+ +  +I          L  L +     L  +       + +L+ LN
Sbjct: 144 EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           +    +      P L  L  ++EL++S N+F   I  G  +  S+LK     N+Q+
Sbjct: 203 LGMCNIK---DMPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 38/184 (20%)

Query: 8   LHNLTNLENLTLDN---------SFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNF 58
            + L +L  L L +         +F ++S L+ +                     L  N 
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL--------------------WLRNNP 158

Query: 59  LQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGN 113
           ++ I       + SL  L L   +    I +       +L+ L++   N+  +P   L  
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTP 216

Query: 114 MTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSE 173
           +  L+ L +S N     I       L S+++L + N+   + I        ++L   +  
Sbjct: 217 LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLA 274

Query: 174 NNQI 177
           +N +
Sbjct: 275 HNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 16/198 (8%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQG-LCEFVHLQELHVDHNNLYGVP 107
           L +N ++ I       + SL  L L ++ L  T++  G       L+EL + +N +  +P
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIESIP 163

Query: 108 PWCLGNMTSLQVLNISS-NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSN 166
            +    + SL  L++    +L   IS    + L +++ L L     +    +  L     
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVG 219

Query: 167 LKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINL 225
           L+  +   N    +    S      L  + + +       +        L  +NL+H NL
Sbjct: 220 LEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 226 RGEFPNWLSENNTKLQTL 243
               P+ L      L  L
Sbjct: 279 S-SLPHDLFTPLRYLVEL 295

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 22/174 (12%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTAL-DKNFLQVI---- 62
              L+ L  L L N     + ++SI          F    ++    L +   L+ I    
Sbjct: 143 FEYLSKLRELWLRN-----NPIESIP------SYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 63  -KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
            + + +LK L+L    +        L   V L+EL +  N+   + P     ++SL+ L 
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPL---VGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENN 175
           + ++Q++  I       L S+ EL L++N     +          L      +N
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 33/132 (25%)

Query: 8   LHNLTNLENLTLDN-------SFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQ 60
              L NL+ L L         +   +  L+ +                     +  N   
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE--------------------MSGNHFP 231

Query: 61  VI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMT 115
            I       ++SLK L + NS+++  I          L EL++ HNNL  +P      + 
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 116 SLQVLNISSNQL 127
            L  L++  N  
Sbjct: 291 YLVELHLHHNPW 302

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 46/272 (16%), Positives = 95/272 (34%), Gaps = 20/272 (7%)

Query: 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKN 294
             +++L   NN ++ I         +L  L ++ N     I      ++ SL  LDLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMK----GHIFSKKINLTNLWRLQLDGNHFIGEIP 350
            L   +         SL +L L  N  K      +FS   +LT L  L++       +I 
Sbjct: 111 YL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQ 166

Query: 351 E----SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNF 406
                 L+       L +  + L    P+ L ++     +I+        + +     + 
Sbjct: 167 RKDFAGLTFLEE---LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 407 LQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTL 466
           ++ L++   ++     S  +           +   + ++   L  ++   +  ++ +  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
             S N+L  +    F  L   + + L  N   
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 29/274 (10%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
              ++ L + +N +  +    L    +LQ L ++SN +   I       L S++ L LS 
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF--PK 207
           NY    +S       S+L   +   N      E+   +   +L  + + +    T    K
Sbjct: 110 NYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 208 FLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRH---L 264
                  L+ + +   +L+   P  L  +   +  L+        +    +        +
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILL---LEIFVDVTSSV 224

Query: 265 TYLDVSDNFFQV----HIPVG------NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYL 314
             L++ D          +  G         +   + ++   L      +L      L  L
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLEL 282

Query: 315 VLSNNKMKG---HIFSKKINLTNLWRLQLDGNHF 345
             S N++K     IF     LT+L ++ L  N +
Sbjct: 283 EFSRNQLKSVPDGIFD---RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 49/256 (19%), Positives = 93/256 (36%), Gaps = 18/256 (7%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L  N +  I     +   +L+ L L+++ +N TI +        L+ L + +N L  +  
Sbjct: 59  LSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSS 117

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK 168
                ++SL  LN+  N       +    HL  +Q L++ N      I        + L+
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 169 IFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLY-HQHDLKHVNLSHINLRG 227
             + + + +    E  SL     ++ +IL     +   +        ++ + L   +L  
Sbjct: 178 ELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 228 ----EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR--RHLTYLDVSDNFFQVHIPVG 281
               E     + +  K  T   V      +FQ+ K       L  L+ S N  +  +P G
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDG 295

Query: 282 ---NMKSLSVLDLSKN 294
               + SL  + L  N
Sbjct: 296 IFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 46/250 (18%), Positives = 95/250 (38%), Gaps = 29/250 (11%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
           L    NL+ L L +     + + +I          F    +++   L  N+L  +     
Sbjct: 72  LQRCVNLQALVLTS-----NGINTIE------EDSFSSLGSLEHLDLSYNYLSNLSSSWF 120

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGL-CEFVHLQELHVDHNN-LYGVPPWCLGNMTSLQVL 120
           K ++SL  L+L  +    T+ +  L      LQ L V + +    +       +T L+ L
Sbjct: 121 KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA- 179
            I ++ L  +     LK ++++  L L      + +    +   S+++  +  +  +   
Sbjct: 180 EIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTF 237

Query: 180 ------QTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWL 233
                   E++SL  KF   ++ ++  S     K L     L  +  S   L+   P+ +
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

Query: 234 SENNTKLQTL 243
            +  T LQ +
Sbjct: 297 FDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 49/237 (20%)

Query: 278 IPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTN 334
           IP G  +++  LDLS NR I  I       C +L+ LVL++N +       FS   +L +
Sbjct: 46  IPSGLTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS---SLGS 101

Query: 335 LWRLQLDGNHFIGEIPESLSNCNLFGG------LYLSDNHLSGKIPRWLGNLSVSEDVIM 388
           L  L L  N+ +  +  S      F        L L  N             ++ E  + 
Sbjct: 102 LEHLDLSYNY-LSNLSSSW-----FKPLSSLTFLNLLGNPYK----------TLGETSL- 144

Query: 389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448
                       F  L  LQIL +   + F  +      F+      L  +  L++  + 
Sbjct: 145 ------------FSHLTKLQILRVGNMDTFTKIQR--KDFA-----GLTFLEELEIDASD 185

Query: 449 LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL 505
           L    P  + ++  +  L +   +   L+          E L+L    L      +L
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 442 LDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500
           L L+ N +   I      +L  +  L++S+N L+ L  S F  L     L+L  N     
Sbjct: 81  LVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-T 138

Query: 501 IPPQLV--ELNALAVFSVAHNKL 521
           +    +   L  L +  V +   
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDT 161

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 9e-18
 Identities = 64/268 (23%), Positives = 101/268 (37%), Gaps = 32/268 (11%)

Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK-- 320
           HL  +  SD   +  +P       ++LDL  N  I ++ +    G   L  LVL NNK  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 321 -MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL---YLSDNHLSGKIPRW 376
            +    FS    L  L +L +  NH + EIP      NL   L    + DN +       
Sbjct: 92  KIHEKAFS---PLRKLQKLYISKNH-LVEIPP-----NLPSSLVELRIHDNRIRKVPKGV 142

Query: 377 LGNLSVSEDVIMPNNHL-EGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKP 435
              L     + M  N L              L  L IS+      +P             
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE-AKLTGIPK----------DL 191

Query: 436 LNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494
             +++ L L  NK+   I L      ++++ L + HN++  +   + S L     L L  
Sbjct: 192 PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 495 NKLTGKIPPQLVELNALAVFSVAHNKLS 522
           NKL+ ++P  L +L  L V  +  N ++
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 62/328 (18%), Positives = 121/328 (36%), Gaps = 51/328 (15%)

Query: 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF 273
            L+ V  S + L+   P  +S +      L   NN +S + +      +HL  L + +N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPD---TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 274 FQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCF-SLRYLVLSNNK---MKGHIF 326
               I       ++ L  L +SKN L       +      SL  L + +N+   +   +F
Sbjct: 90  IS-KIHEKAFSPLRKLQKLYISKNHL-----VEIPPNLPSSLVELRIHDNRIRKVPKGVF 143

Query: 327 SKKINLTNLWRLQLDGNHFIGEI--PESLSNCNLFGGLYLSDNHLSG---KIPRWLGNLS 381
           S    L N+  +++ GN        P +     L   L +S+  L+G    +P  L  L 
Sbjct: 144 S---GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY-LRISEAKLTGIPKDLPETLNELH 199

Query: 382 VSEDVIMPNNHLEGPIPME-FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMS 440
           +       +N ++  I +E   + + L  L +    I   + +     S      L ++ 
Sbjct: 200 LD------HNKIQA-IELEDLLRYSKLYRLGLGHNQI-RMIEN--GSLS-----FLPTLR 244

Query: 441 GLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQT------ESLDLSY 494
            L L  NKL+  +P  + +L  +  + +  N +T + ++ F  +           + L  
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 495 NKLT-GKIPPQLVE-LNALAVFSVAHNK 520
           N +   ++ P     +         + K
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 55/317 (17%), Positives = 97/317 (30%), Gaps = 75/317 (23%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
               LL L N+ ++  +         HL  L + +N +  +       +  LQ L IS N
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
            L       P     S+ EL++ +N  +  +  G      N+   +   N +        
Sbjct: 113 HLV----EIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPL-------- 159

Query: 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ 245
                   +     G+                + L+++         +SE          
Sbjct: 160 -------ENSGFEPGA-------------FDGLKLNYLR--------ISEAK-------- 183

Query: 246 VNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPE 302
                  +  +PK     L  L +  N  Q  I +        L  L L  N+ I  I  
Sbjct: 184 -------LTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ-IRMIEN 234

Query: 303 RLAMGCFSLRYLVLSNNKMKG--HIFSKKINLTNLWRLQLDGNHFIGEIPES-------L 353
                  +LR L L NNK+           +L  L  + L  N+ I ++  +        
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAGLP---DLKLLQVVYLHTNN-ITKVGVNDFCPVGFG 290

Query: 354 SNCNLFGGLYLSDNHLS 370
                + G+ L +N + 
Sbjct: 291 VKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 45/275 (16%), Positives = 82/275 (29%), Gaps = 36/275 (13%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L  N +  I       +  L+ L +S + L    +   L     L EL +  N +  VP 
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHL--VEIPPNL--PSSLVELRIHDNRIRKVPK 140

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF-QIPISLGPLYNHSNL 167
                + ++  + +  N L  +   P       +  L++S      IP  L        L
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETL 195

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINLR 226
                ++N+I    E   L    +L  + L H          L     L+ ++L +  L 
Sbjct: 196 NELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

Query: 227 GEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSL 286
              P  L  +   LQ +    N ++ +                  N F            
Sbjct: 255 -RVPAGLP-DLKLLQVVYLHTNNITKV----------------GVNDFCPVGFGVKRAYY 296

Query: 287 SVLDLSKNRL-IGKIPERLAMGCFSLRYLVLSNNK 320
           + + L  N +   ++             +   N K
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 60/276 (21%), Positives = 103/276 (37%), Gaps = 48/276 (17%)

Query: 252 GIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGC 308
            + ++P     +   L++ +N  Q  I V    +++ L +L LS+N  I  I      G 
Sbjct: 54  NLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGL 111

Query: 309 FSLRYLVLSNNKMKG---HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY-L 364
            +L  L L +N++       F     L+ L  L L  N  I  IP        F  +  L
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNP-IESIPSYA-----FNRIPSL 162

Query: 365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSC 424
               L                       L       F  L+ L+ L+++       +P+ 
Sbjct: 163 RRLDLGE------------------LKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN- 202

Query: 425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL 484
               +     PL  +  LDLS N L+   P     L  +  L +  +++  +  + F NL
Sbjct: 203 ---LT-----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 485 KQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHN 519
           +    ++L++N LT  +P  L   L+ L    + HN
Sbjct: 255 QSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 54/285 (18%), Positives = 102/285 (35%), Gaps = 66/285 (23%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
           T+ +LL+L  +++   I         HL+ L +  N++  +       + +L  L +  N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFD-SENNQIYAQTESH 184
           +LT  I +    +L  ++EL L NN  +  I         +L+  D  E  ++       
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSY----- 175

Query: 185 SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV 244
                       +S G+            +L+++NL+  NL             ++  L 
Sbjct: 176 ------------ISEGA-------FEGLSNLRYLNLAMCNL------------REIPNLT 204

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIP 301
            +                 L  LD+S N     I  G    +  L  L + +++ I  I 
Sbjct: 205 PLIK---------------LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ-IQVIE 247

Query: 302 ERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTNLWRLQLDGN 343
                   SL  + L++N +      +F+    L +L R+ L  N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS--- 64
             +L +LE L L       + +++I       +  F G   ++   L  N L  I +   
Sbjct: 84  FKHLRHLEILQLSR-----NHIRTI------EIGAFNGLANLNTLELFDNRLTTIPNGAF 132

Query: 65  --MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNN-LYGVPPWCLGNMTSLQVLN 121
             ++ LK L L N+ +  +I          L+ L +     L  +       +++L+ LN
Sbjct: 133 VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           ++   L      P L  L  + EL LS N+    I  G      +L+      +QI
Sbjct: 192 LAMCNLR---EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 14/197 (7%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPP 108
           L +N ++ I       + +L  L L ++RL  TI +        L+EL + +N +  +P 
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 109 WCLGNMTSLQVLNISS-NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
           +    + SL+ L++    +L+  IS    + L +++ L L+    +    +  L     L
Sbjct: 154 YAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKL 209

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ-HDLKHVNLSHINLR 226
              D   N + +     S      L  + +         +  +     L  +NL+H NL 
Sbjct: 210 DELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 227 GEFPNWLSENNTKLQTL 243
              P+ L      L+ +
Sbjct: 269 -LLPHDLFTPLHHLERI 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 44/175 (25%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
              L+ L+ L L N                                   N ++ I     
Sbjct: 132 FVYLSKLKELWLRN-----------------------------------NPIESIPSYAF 156

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
             + SL+ L L   +    I +       +L+ L++   NL  +P   L  +  L  L++
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDL 214

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           S N L+  I     + L  +Q+L +  +  Q+ I      N  +L   +  +N +
Sbjct: 215 SGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNL 267

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 56/273 (20%), Positives = 103/273 (37%), Gaps = 53/273 (19%)

Query: 263 HLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRL-IGKIPERLAMGCFSLRYLVLSN 318
             T L++  N  Q  +P G    +  L+ L LS N L       +   G  SL+YL LS 
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 319 NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG------LYLSDNHLSGK 372
           N +   + S  + L  L  L    ++      + +S  ++F        L +S  H    
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTR-- 139

Query: 373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ 432
                        +              F  L+ L++L ++  +   +     + F+   
Sbjct: 140 --------VAFNGI--------------FNGLSSLEVLKMAGNSFQENFLP--DIFT--- 172

Query: 433 GKPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLD 491
              L +++ LDLS  +L  ++      +L+ +  LN+SHN    L    +  L   + LD
Sbjct: 173 --ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 492 LSYNKLTGKIPPQLVE--LNALAVFSVAHNKLS 522
            S N +      Q ++   ++LA  ++  N  +
Sbjct: 230 YSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 49/264 (18%), Positives = 89/264 (33%), Gaps = 38/264 (14%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT-GNISSPPLKHLKSIQELKLS 148
                 L ++ N L  +P      +T L  L++SSN L+     S       S++ L LS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 149 NNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKF 208
            N   +            L+  D +++ +                  +            
Sbjct: 87  FN--GVITMSSNFLGLEQLEHLDFQHSNL----------------KQMSEFS-------V 121

Query: 209 LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV-QVNNYLSGIFQMPKHARRHLTYL 267
                +L ++++SH + R  F        + L+ L    N++            R+LT+L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 268 DVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK-- 322
           D+S    +  +      ++ SL VL++S N     +         SL+ L  S N +   
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 323 -GHIFSKKINLTNLWRLQLDGNHF 345
                      ++L  L L  N F
Sbjct: 239 KKQELQH--FPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 24/251 (9%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----K 63
              LT L  L+L ++        S +           G  ++    L  N +  +     
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQS---------DFGTTSLKYLDLSFNGVITMSSNFL 98

Query: 64  SMTSLKLLSLSNSRLNGTILDQGL-CEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
            +  L+ L   +S L   + +  +     +L  L + H +           ++SL+VL +
Sbjct: 99  GLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTE 182
           + N    N        L+++  L LS    +  +S     + S+L++ +  +N      +
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNF-FSLD 215

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPK--FLYHQHDLKHVNLSHINLR-----GEFPNWLSE 235
           +        L  +  S    +T  K    +    L  +NL+  +         F  W+ +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275

Query: 236 NNTKLQTLVQV 246
               L  + ++
Sbjct: 276 QRQLLVEVERM 286

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK- 500
           +  +   LT  +P  I   +    L +  NKL  L    F  L Q   L LS N L+ K 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 501 -IPPQLVELNALAVFSVAHNKLS 522
                     +L    ++ N + 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI 91

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 5e-17
 Identities = 54/303 (17%), Positives = 91/303 (30%), Gaps = 42/303 (13%)

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRH------LTYLDVSDNFFQVHIPVGNMKSL 286
           L      L+ L++  +  + + Q     +        +    +        + V  +  L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 287 SVLDLSKNRLIGKIPERLAMGCF-SLRYLVLSNNKMKGHIFS----KKINLTNLWRLQLD 341
             L L    + G  P  L       L  L L N             ++     L  L + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 342 GNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEF 401
             H +    E +        L LSDN   G+                    +    P++F
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-----------------LISALCPLKF 200

Query: 402 CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP-LRIGNL 460
             L  L + +   +   G   +               + GLDLS N L            
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALA--------AARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 461 TRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK 520
           +++++LN+S   L  +     + L     LDLSYN+L     P   EL  +   S+  N 
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN--PSPDELPQVGNLSLKGNP 307

Query: 521 LSG 523
              
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 1e-14
 Identities = 55/267 (20%), Positives = 100/267 (37%), Gaps = 19/267 (7%)

Query: 46  FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGL--CEFVHLQELHVDHNNL 103
            + +D  A    F  +IKS+ SLK L++  +R+   IL   L       LQEL +++  +
Sbjct: 49  LKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 104 YGVPPWCLGNMT--SLQVLNISSNQLTGNISSPPL---KHLKSIQELKLSNNYFQIPISL 158
            G  P  L   T   L +LN+ +       +            ++ L ++  +     S 
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSC 166

Query: 159 GPLYNHSNLKIFD-SENNQIYAQTESHSLTPKF--QLNSIILSHGSGVTFPKF----LYH 211
             +     L   D S+N ++  +    +L P     L  + L +    T           
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 212 QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSD 271
           +  L+ ++LSH +LR        +  ++L +L      L  +   PK     L+ LD+S 
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV---PKGLPAKLSVLDLSY 283

Query: 272 NFFQVHIPVGNMKSLSVLDLSKNRLIG 298
           N    +     +  +  L L  N  + 
Sbjct: 284 NRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 48/272 (17%), Positives = 73/272 (26%), Gaps = 35/272 (12%)

Query: 111 LGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLY--NHSNLK 168
            G   SL+ L    +          +    S++ L +        I  G L     S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 169 IFDSENNQIYAQTESHSLTPKF-QLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRG 227
               EN ++        L      LN + L + S  T   +L          L  +++  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 228 ----EFPNWLSENNTKLQTLVQVNNYLSGIFQMP----KHARRHLTYLDVSDNFFQ---- 275
                F          L TL   +N   G   +           L  L + +   +    
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 276 -VHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GHIFSK--- 328
                      L  LDLS N L              L  L LS   +K     + +K   
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSV 278

Query: 329 -------------KINLTNLWRLQLDGNHFIG 347
                           L  +  L L GN F+ 
Sbjct: 279 LDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 11/157 (7%)

Query: 376 WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKP 435
           + G  S+   +   +   +     +   +  L +  ++ +         F    +     
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLT--RIHTLNVSHNKLTGL--ILSTFSNLKQT--ES 489
           L     L L   ++TG  P  +   T   ++ LN+ +         L+      +   + 
Sbjct: 97  LQE---LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 490 LDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP 526
           L ++          Q+    AL+   ++ N   G+  
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 6e-17
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 15/208 (7%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
           L  +K +  LK LSL ++ ++  I   GL     L+ L++ +N +  +    L  +T L 
Sbjct: 102 LSSLKDLKKLKSLSLEHNGIS-DI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLD 156

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
            L++  NQ++ +I   PL  L  +Q L LS N   I   L  L    NL + +  + +  
Sbjct: 157 TLSLEDNQIS-DIV--PLAGLTKLQNLYLSKN--HI-SDLRALAGLKNLDVLELFSQECL 210

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
            +  +H  +     N++  + GS +  P+ +    D +  N+       EF N +S    
Sbjct: 211 NKPINH-QSNLVVPNTVKNTDGS-LVTPEIISDDGDYEKPNVKWHLP--EFTNEVSFIFY 266

Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTY 266
           +  T+ +      G    P      ++Y
Sbjct: 267 QPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 61/457 (13%), Positives = 133/457 (29%), Gaps = 73/457 (15%)

Query: 86  GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL 145
               F    + ++   ++          + S+  +  +++ +  ++    +++L ++ +L
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKL 70

Query: 146 KLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF 205
            L+ N  ++   + PL N  NL     + N+I        L+    L             
Sbjct: 71  FLNGN--KL-TDIKPLTNLKNLGWLFLDENKI------KDLSSLKDLKK----------- 110

Query: 206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLT 265
                    LK ++L H        N +S+              ++G+  +P+     L 
Sbjct: 111 ---------LKSLSLEH--------NGISD--------------INGLVHLPQ-----LE 134

Query: 266 YLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI 325
            L + +N       +  +  L  L L  N+ I  I      G   L+ L LS N +    
Sbjct: 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--D 189

Query: 326 FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED 385
                 L NL  L+L     + +     SN  +   +  +D  L            +S+D
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI-------ISDD 242

Query: 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS 445
                 +++  +P    +++F+    ++                 +       + G  + 
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIK 302

Query: 446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL 505
                G         T+   +                N       D +   +      + 
Sbjct: 303 TKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEK 362

Query: 506 VELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDG 542
                  V  +  N    K P           +S+  
Sbjct: 363 TVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLASHRC 399

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 2e-14
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 18/222 (8%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
           +Q I+ + ++  L L+ ++L      + L    +L  L +D N +  +    L ++  L+
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLK 112

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
            L++  N ++ +I+   L HL  ++ L L NN  +I   +  L   + L     E+NQI 
Sbjct: 113 SLSLEHNGIS-DIN--GLVHLPQLESLYLGNN--KI-TDITVLSRLTKLDTLSLEDNQIS 166

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
                  LT   +L ++ LS  + ++  + L    +L  + L       +  N  S N  
Sbjct: 167 DIVPLAGLT---KLQNLYLSK-NHISDLRALAGLKNLDVLELFSQECLNKPINHQS-NLV 221

Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPV 280
              T+   +  L     +           +V  +  +    V
Sbjct: 222 VPNTVKNTDGSLVTPEIISDD--GDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.1 bits (184), Expect = 3e-14
 Identities = 55/313 (17%), Positives = 107/313 (34%), Gaps = 71/313 (22%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
             +       +L    +   +      E   + ++  +++++  V    +  + ++  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 71

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           ++ N+LT +I   PL +LK++  L L  N  +I   L  L +   LK    E+N I    
Sbjct: 72  LNGNKLT-DIK--PLTNLKNLGWLFLDEN--KI-KDLSSLKDLKKLKSLSLEHNGI---- 121

Query: 182 ESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQ 241
                                                +++ +            +  +L+
Sbjct: 122 ------------------------------------SDINGL-----------VHLPQLE 134

Query: 242 TLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301
           +L   NN ++ I  + +     L  L + DN     +P+  +  L  L LSKN  I  + 
Sbjct: 135 SLYLGNNKITDITVLSRL--TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLR 191

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL-QLDGN---HFIGEIPESLSNCN 357
             LA G  +L  L L + +      + + NL     +   DG+     I          N
Sbjct: 192 A-LA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

Query: 358 LFGGLYLSDNHLS 370
           +   L    N +S
Sbjct: 250 VKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 1e-13
 Identities = 49/258 (18%), Positives = 89/258 (34%), Gaps = 25/258 (9%)

Query: 240 LQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGK 299
           +   + V+  +  IF     A       ++        +    + S+  +  + +  I  
Sbjct: 1   MGETITVSTPIKQIFPDDAFA--ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD-IKS 57

Query: 300 IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF 359
           + + +     ++  L L+ NK+   I     NL NL  L LD N  I ++  SL +    
Sbjct: 58  V-QGIQ-YLPNVTKLFLNGNKLT-DIKPLT-NLKNLGWLFLDENK-IKDL-SSLKDLKKL 111

Query: 360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG 419
             L L  N +S  I   L +L   E + + NN +         +L  L  L +    I  
Sbjct: 112 KSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS- 166

Query: 420 SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS 479
                     I     L  +  L LS N ++    L    L  +  L +   +     ++
Sbjct: 167 ---------DIVPLAGLTKLQNLYLSKNHISDLRAL--AGLKNLDVLELFSQECLNKPIN 215

Query: 480 TFSNLKQTESLDLSYNKL 497
             SNL    ++  +   L
Sbjct: 216 HQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 1e-13
 Identities = 39/236 (16%), Positives = 90/236 (38%), Gaps = 18/236 (7%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
                 + S+  +  +NS +  ++  QG+    ++ +L ++ N L  + P  L N+ +L 
Sbjct: 36  AVTQNELNSIDQIIANNSDIK-SV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLG 90

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
            L +  N++  ++S   LK LK ++ L L +N   I   +  L +   L+     NN+I 
Sbjct: 91  WLFLDENKIK-DLS--SLKDLKKLKSLSLEHN--GI-SDINGLVHLPQLESLYLGNNKI- 143

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
             T+   L+   +L+++ L   + ++    L     L+++ LS  ++             
Sbjct: 144 --TDITVLSRLTKLDTLSLED-NQISDIVPLAGLTKLQNLYLSKNHISDLRAL---AGLK 197

Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKN 294
            L  L   +          +        +  +D        + +       ++  +
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 47/290 (16%), Positives = 81/290 (27%), Gaps = 50/290 (17%)

Query: 117 LQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQ 176
           +      S  +   I   P        +  L                 +++    + N+ 
Sbjct: 1   MGETITVSTPIK-QIF--PDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSD 54

Query: 177 IYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSEN 236
           I                S+           + + +  ++  + L+   L    P     N
Sbjct: 55  I---------------KSV-----------QGIQYLPNVTKLFLNGNKLTDIKP---LTN 85

Query: 237 NTKLQTLVQVNNY---LSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK 293
              L  L    N    LS +  + K     L  L +  N       + ++  L  L L  
Sbjct: 86  LKNLGWLFLDENKIKDLSSLKDLKK-----LKSLSLEHNGISDINGLVHLPQLESLYLGN 140

Query: 294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESL 353
           N++       L+     L  L L +N++          LT L  L L  NH I ++  +L
Sbjct: 141 NKI--TDITVLS-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL-RAL 193

Query: 354 SNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQ 403
           +       L L       K      NL V   V   +  L  P  +    
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 46/276 (16%), Positives = 104/276 (37%), Gaps = 24/276 (8%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
             ++ +   ++   S +  T+      +   +  L      +  +    +  + +L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           +  NQ+T +++  PLK+L  I EL+LS N  +   ++  +    ++K  D  + QI   T
Sbjct: 70  LKDNQIT-DLA--PLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 182 ESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLS--ENNTK 239
               L+    L  + L   + +T    L    +L+++++ +  +       L+   N +K
Sbjct: 124 PLAGLS---NLQVLYLDL-NQITNISPLAGLTNLQYLSIGNAQVSD-----LTPLANLSK 174

Query: 240 LQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGK 299
           L TL   +N +S I  +      +L  + + +N      P+ N  +L ++ L+   +  +
Sbjct: 175 LTTLKADDNKISDISPLASL--PNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ 232

Query: 300 IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNL 335
                            S   +     S      + 
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 44/282 (15%), Positives = 92/282 (32%), Gaps = 44/282 (15%)

Query: 110 CLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKI 169
               + +   +    + +T    +     L  I  L           ++  +   +NL  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 170 FDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEF 229
            + ++NQI        L P   L                      +  + LS   L+   
Sbjct: 68  LELKDNQI------TDLAPLKNLTK--------------------ITELELSGNPLKNVS 101

Query: 230 PNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVL 289
                     ++TL   +  ++ +  +      +L  L +  N      P+  + +L  L
Sbjct: 102 AI---AGLQSIKTLDLTSTQITDVTPLAGL--SNLQVLYLDLNQITNISPLAGLTNLQYL 156

Query: 290 DLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI 349
            +   + +  +   LA     L  L   +NK+     S   +L NL  + L  N  I ++
Sbjct: 157 SIGNAQ-VSDLTP-LA-NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQ-ISDV 210

Query: 350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN 391
              L+N +    + L++  ++ +   +  NL V   V  P+ 
Sbjct: 211 -SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 27/249 (10%)

Query: 278 IPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR 337
            P   + +   +   K+ +   + +        +  L      +          L NL  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67

Query: 338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI 397
           L+L  N  I ++   L N      L LS N L       +  L   + + + +  +    
Sbjct: 68  LELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT 123

Query: 398 PMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI 457
           P     L+ LQ+L +    I           +I     L ++  L +   +++   PL  
Sbjct: 124 P--LAGLSNLQVLYLDLNQI----------TNISPLAGLTNLQYLSIGNAQVSDLTPL-- 169

Query: 458 GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA 517
            NL+++ TL    NK++   +S  ++L     + L  N+++  + P L   + L + ++ 
Sbjct: 170 ANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLT 225

Query: 518 HNKLSGKTP 526
           +  ++ +  
Sbjct: 226 NQTITNQPV 234

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 25/249 (10%)

Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
           +   +    +     +   ++  ++ L       +  I         +L  L L +N++ 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTG-VTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 323 GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSV 382
               +   NLT +  L+L GN  +  +  +++       L L+   ++   P  L  LS 
Sbjct: 77  D--LAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL 442
            + + +  N +    P     L  LQ L I    +     S   P +      L+ ++ L
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV-----SDLTPLA-----NLSKLTTL 178

Query: 443 DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502
               NK++   PL   +L  +  +++ +N+++ +  S  +N      + L+   +T +  
Sbjct: 179 KADDNKISDISPL--ASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPV 234

Query: 503 PQLVELNAL 511
                L   
Sbjct: 235 FYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 9e-11
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 26/241 (10%)

Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
            +T L            V  + +L  L+L  N+ I  +          +  L LS N +K
Sbjct: 42  GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLK 98

Query: 323 GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSV 382
               S    L ++  L L     I ++   L+  +    LYL  N ++   P  L  L+ 
Sbjct: 99  --NVSAIAGLQSIKTLDLTSTQ-ITDV-TPLAGLSNLQVLYLDLNQITNISP--LAGLTN 152

Query: 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL 442
            + + + N  +    P+    L+ L  L      I            I     L ++  +
Sbjct: 153 LQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKIS----------DISPLASLPNLIEV 200

Query: 443 DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP 502
            L  N+++   PL   N + +  + +++  +T   +   +NL      ++        I 
Sbjct: 201 HLKNNQISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIA 255

Query: 503 P 503
           P
Sbjct: 256 P 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 52/266 (19%), Positives = 97/266 (36%), Gaps = 31/266 (11%)

Query: 238 TKLQTLVQVNNY---LSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKN 294
             + TL         + G+  +      +L  L++ DN      P+ N+  ++ L+LS N
Sbjct: 41  DGITTLSAFGTGVTTIEGVQYLN-----NLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLS 354
            L  K    +A G  S++ L L++ ++     +    L+NL  L LD N  I  I   L+
Sbjct: 96  PL--KNVSAIA-GLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQ-ITNI-SPLA 148

Query: 355 NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK 414
                  L + +  +S   P  L NLS    +   +N +    P     L  L  + +  
Sbjct: 149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204

Query: 415 KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474
             I            +      +++  + L+   +T +      NL       V      
Sbjct: 205 NQIS----------DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLV--VPNVVKGPSGA 252

Query: 475 GLILSTFSNLKQTESLDLSYNKLTGK 500
            +  +T S+     S +L++N  +  
Sbjct: 253 PIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 27/176 (15%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-- 62
            +   +L  +  L+        + + +I                + G  L  N +  +  
Sbjct: 34  TVTQADLDGITTLSAFG-----TGVTTIEGVQ--------YLNNLIGLELKDNQITDLAP 80

Query: 63  -KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
            K++T +  L LS + L        +     ++ L +    +  V P  L  +++LQVL 
Sbjct: 81  LKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           +  NQ+T   +  PL  L ++Q L + N   Q+   L PL N S L    +++N+I
Sbjct: 136 LDLNQIT---NISPLAGLTNLQYLSIGNA--QV-SDLTPLANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 32/176 (18%), Positives = 76/176 (43%), Gaps = 28/176 (15%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-- 62
           +  +  L +++ L L ++   ++ +  +A           G   +    LD N +  I  
Sbjct: 100 VSAIAGLQSIKTLDLTST--QITDVTPLA-----------GLSNLQVLYLDLNQITNISP 146

Query: 63  -KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
              +T+L+ LS+ N++++       L     L  L  D N +  + P  L ++ +L  ++
Sbjct: 147 LAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           + +NQ++      PL +  ++  + L+N      I+  P++ ++NL + +      
Sbjct: 202 LKNNQIS---DVSPLANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPS 250

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 21/147 (14%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
           L  + +++ L  L   +++++       L    +L E+H+ +N +  V P  L N ++L 
Sbjct: 166 LTPLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVSP--LANTSNLF 220

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
           ++ +++      I++ P+ +  ++    +       PI+   + ++         +  + 
Sbjct: 221 IVTLTNQT----ITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTY-----ASPNLT 271

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTF 205
               S      +  N  +    + V F
Sbjct: 272 WNLTSFINNVSYTFNQSVTFKNTTVPF 298

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 44/249 (17%)

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK---MKGHIFSKKINLT 333
            +PVG   +   + L  NR I  +P      C +L  L L +N    +    F+    L 
Sbjct: 25  AVPVGIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFT---GLA 80

Query: 334 NLWRLQLDGNHFIGEIP-ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
            L +L L  N  +  +   +         L+L    L            +   +      
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ----------ELGPGL------ 124

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
                   F  L  LQ L +   N   +LP   + F       L +++ L L  N+++  
Sbjct: 125 --------FRGLAALQYLYLQD-NALQALPD--DTFR-----DLGNLTHLFLHGNRIS-S 167

Query: 453 IPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ-LVELNA 510
           +P R    L  +  L +  N++  +    F +L +  +L L  N L+  +P + L  L A
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRA 226

Query: 511 LAVFSVAHN 519
           L    +  N
Sbjct: 227 LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 46/260 (17%), Positives = 77/260 (29%), Gaps = 61/260 (23%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
               Q + +  N +  VP        +L +L + SN L   I +     L  +++L LS+
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL 209
           N     +     +    L     +   +        L P                F    
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGL------QELGPG--------------LF---- 125

Query: 210 YHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDV 269
                L    L ++ L           +  LQ L          F+       +LT+L +
Sbjct: 126 ---RGL--AALQYLYL----------QDNALQAL------PDDTFRDL----GNLTHLFL 160

Query: 270 SDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---G 323
             N     +P      + SL  L L +NR +  +          L  L L  N +     
Sbjct: 161 HGNRIS-SVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

Query: 324 HIFSKKINLTNLWRLQLDGN 343
              +    L  L  L+L+ N
Sbjct: 219 EALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 20/176 (11%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNF-LQVIKS-- 64
                NL  L L ++   ++ + + A         F G   ++   L  N  L+ +    
Sbjct: 52  FRACRNLTILWLHSN--VLARIDAAA---------FTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 65  ---MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
              +  L  L L    L   +          LQ L++  N L  +P     ++ +L  L 
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           +  N+++ ++     + L S+  L L  N     +      +   L       N +
Sbjct: 160 LHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 37/235 (15%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
            + + + L  +R++  +         +L  L +  N L  +       +  L+ L++S N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
               ++       L  +  L L     Q  +  G     + L+    ++N +       +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNAL------QA 143

Query: 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ 245
           L                           +L H+ L    +    P         L  L+ 
Sbjct: 144 LP------------------DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLL 184

Query: 246 VNNYLSGIFQMPKHARRHLT---YLDVSDNFFQVHIPVG---NMKSLSVLDLSKN 294
             N ++ +     HA R L     L +  N     +P      +++L  L L+ N
Sbjct: 185 HQNRVAHV---HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
              L  L+ L L ++      LQ++          F     +    L  N +  +     
Sbjct: 125 FRGLAALQYLYLQDN-----ALQALPD------DTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
           + + SL  L L  +R+   +      +   L  L++  NNL  +P   L  + +LQ L +
Sbjct: 174 RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 123 SSNQL 127
           + N  
Sbjct: 233 NDNPW 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 13/163 (7%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
           L  +K +  LK LSL ++ ++  I   GL     L+ L++ +N +  +    L  +T L 
Sbjct: 105 LSSLKDLKKLKSLSLEHNGIS-DI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLD 159

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
            L++  NQ++ +I   PL  L  +Q L LS N   I   L  L    NL + +  + +  
Sbjct: 160 TLSLEDNQIS-DIV--PLAGLTKLQNLYLSKN--HI-SDLRALAGLKNLDVLELFSQECL 213

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLS 221
            +  +H  +     N++  + GS VT P+ +    D +  N+ 
Sbjct: 214 NKPINH-QSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVK 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 45/282 (15%), Positives = 100/282 (35%), Gaps = 44/282 (15%)

Query: 86  GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL 145
               F    + ++   ++          + S+  +  +++ +    S   +++L ++ +L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 146 KLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF 205
            L+ N  ++   + PL N  NL     + N++        L+    L             
Sbjct: 74  FLNGN--KL-TDIKPLANLKNLGWLFLDENKV------KDLSSLKDLKK----------- 113

Query: 206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLT 265
                    LK ++L H  +          +  +L++L   NN ++ I  + +     L 
Sbjct: 114 ---------LKSLSLEHNGISDINGL---VHLPQLESLYLGNNKITDITVLSRL--TKLD 159

Query: 266 YLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI 325
            L + DN     +P+  +  L  L LSKN  I  +      G  +L  L L + +     
Sbjct: 160 TLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLDVLELFSQECLNKP 216

Query: 326 FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDN 367
            + + NL     ++      +   PE +S+   +    +  +
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 42/243 (17%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
             +       +L    +   +      E   + ++  +++++  V    +  + ++  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           ++ N+LT +I   PL +LK++  L L  N  ++   L  L +   LK    E+N I   +
Sbjct: 75  LNGNKLT-DIK--PLANLKNLGWLFLDEN--KV-KDLSSLKDLKKLKSLSLEHNGI---S 125

Query: 182 ESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQ 241
           + + L    QL S+ L + + +T    L     L  ++L    +                
Sbjct: 126 DINGLVHLPQLESLYLGN-NKITDITVLSRLTKLDTLSLEDNQIS--------------- 169

Query: 242 TLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301
                   +  +  + K     L  L +S N       +  +K+L VL+L     + K  
Sbjct: 170 -------DIVPLAGLTK-----LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217

Query: 302 ERL 304
              
Sbjct: 218 NHQ 220

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 48/257 (18%), Positives = 88/257 (34%), Gaps = 25/257 (9%)

Query: 242 TLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIP 301
             + V   +  IF     A       ++        +    + S+  +  + +  I  + 
Sbjct: 6   ETITVPTPIKQIFSDDAFA--ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD-IKSV- 61

Query: 302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG 361
           + +     ++  L L+ NK+   I     NL NL  L LD N  + ++  SL +      
Sbjct: 62  QGIQ-YLPNVTKLFLNGNKLT-DIKPLA-NLKNLGWLFLDENK-VKDL-SSLKDLKKLKS 116

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L L  N +S  I   L +L   E + + NN +     +   +L  L  L +    I    
Sbjct: 117 LSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS--- 169

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF 481
                   I     L  +  L LS N ++    L    L  +  L +   +     ++  
Sbjct: 170 -------DIVPLAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQ 220

Query: 482 SNLKQTESLDLSYNKLT 498
           SNL    ++  +   L 
Sbjct: 221 SNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 16/195 (8%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
           +Q I+ + ++  L L+ ++L      + L    +L  L +D N +  +    L ++  L+
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLK 115

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
            L++  N ++ +I+   L HL  ++ L L NN       +  L   + L     E+NQI 
Sbjct: 116 SLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI- 168

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
             ++   L    +L ++ LS  + ++  + L    +L  + L       +  N  S N  
Sbjct: 169 --SDIVPLAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFSQECLNKPINHQS-NLV 224

Query: 239 KLQTLVQVNNYLSGI 253
              T+   +  L   
Sbjct: 225 VPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 45/266 (16%), Positives = 101/266 (37%), Gaps = 25/266 (9%)

Query: 235 ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKN 294
           +   +          ++    + ++    +  +  +++  +    +  + +++ L L+ N
Sbjct: 21  DAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 78

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLS 354
           + +  I + LA    +L +L L  NK+K    S   +L  L  L L+ N  I +I   L 
Sbjct: 79  K-LTDI-KPLA-NLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNG-ISDI-NGLV 131

Query: 355 NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK 414
           +      LYL +N ++      L  L+  + + + +N +   +P     L  LQ L +SK
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 415 KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474
            +I            ++    L ++  L+L   +   +      NL   +T+  +   L 
Sbjct: 188 NHIS----------DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

Query: 475 GLILSTFSNLKQTESLDLSYNKLTGK 500
                  S+    E  ++ ++     
Sbjct: 238 T--PEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 33/243 (13%)

Query: 135 PLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNS 194
                    +  L                 +++    + N+ I +      L     +  
Sbjct: 19  SDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQYLP---NVTK 72

Query: 195 IILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLS-----ENNTKLQTLVQVNNY 249
           + L+  + +T  K L +  +L  + L          N +      ++  KL++L   +N 
Sbjct: 73  LFLNG-NKLTDIKPLANLKNLGWLFLDE--------NKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 250 ---LSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAM 306
              ++G+  +P+     L  L + +N       +  +  L  L L  N+ I  I      
Sbjct: 124 ISDINGLVHLPQ-----LESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP--LA 175

Query: 307 GCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSD 366
           G   L+ L LS N +          L NL  L+L     + +     SN  +   +  +D
Sbjct: 176 GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 367 NHL 369
             L
Sbjct: 234 GSL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 8e-13
 Identities = 49/291 (16%), Positives = 84/291 (28%), Gaps = 57/291 (19%)

Query: 216 KHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ 275
           +        +  E P+ L  N      L  V   L  I +        L  +++S N   
Sbjct: 12  RVFLCQESKVT-EIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 276 VHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINL 332
             I      N+  L  + + K   +  I         +L+YL++SN  +K      KI+ 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGG-------LYLSDNHLSGKIPRWLGNLSVSED 385
                L +  N  I  I       N F G       L+L+ N +            +   
Sbjct: 128 LQKVLLDIQDNINIHTIER-----NSFVGLSFESVILWLNKNGIQ----------EIHNS 172

Query: 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS 445
                          F      ++      N+       F           +    LD+S
Sbjct: 173 A--------------FNGTQLDELNLSDNNNLEELPNDVF--------HGASGPVILDIS 210

Query: 446 CNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
             ++   +P     NL ++   +  + K     L T   L       L+Y 
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 39/243 (16%), Positives = 71/243 (29%), Gaps = 28/243 (11%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
             +  EL      L  +          L+ + IS N +   I +    +L  + E+++  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYA--QTESHSLTPKFQL----NSIILSHGSGV 203
               + I+     N  NL+     N  I             K  L    N  I +     
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLS----GIFQMPKH 259
               F+    +   + L+   ++ E  N         +  +  NN L      +F     
Sbjct: 149 ----FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS- 202

Query: 260 ARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVL 316
                  LD+S       +P     N+K L        + +    E+L     +L    L
Sbjct: 203 ---GPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP-TLEKLV----ALMEASL 253

Query: 317 SNN 319
           +  
Sbjct: 254 TYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 54  LDKNFLQVIKSMT--SLKLLSLSNSRLNG-TILDQG-LCEFVHLQELHVDHNNLYGVPPW 109
           L+KN +Q I +      +L  L+ S  N    L             L +    ++ +P +
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 110 CLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY 151
            L N+  L+  +  + +       P L+ L ++ E  L+   
Sbjct: 221 GLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 19/147 (12%)

Query: 362 LYLSDNHLS---GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF 418
               ++ ++     +PR    L            L       F     L+ ++IS+ ++ 
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELRFV------LTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 419 GSLPSCFNPFSIKQGKPLNSMSGLDLS-CNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGL 476
             + +  + FS      L  +  + +   N L   I      NL  +  L +S+  +  L
Sbjct: 68  EVIEA--DVFS-----NLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHL 119

Query: 477 ILSTFSNLKQTESLDLSYNKLTGKIPP 503
                 +  Q   LD+  N     I  
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIER 146

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 31/171 (18%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTS 67
                +LE + +  +     +L+ I                            V  ++  
Sbjct: 50  FSGFGDLEKIEISQN----DVLEVIEA-------------------------DVFSNLPK 80

Query: 68  LKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQL 127
           L  + +  +     I  +      +LQ L + +  +  +P     +     +L+I  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 128 TGNISSPPLKHLKS-IQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
              I       L      L L+ N  Q  I           ++  S+NN +
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
                +K+T EIP  +        L     KL  +    FS     E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 502 PPQ----LVELNAL 511
                  L +L+ +
Sbjct: 71  EADVFSNLPKLHEI 84

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
              I  +++L+ L +    +    +   L     L  L + H+         +  +  + 
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
            +++S N    +I   PLK L  ++ L +  +   +      + +   L    + +  I
Sbjct: 140 SIDLSYNGAITDIM--PLKTLPELKSLNIQFD--GV-HDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
           L+++  L +    +T +    +  LT +  L++SH+     IL+  + L +  S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 496 KLTGKIPPQLVELNALAVFSVAHNKLS 522
                I P L  L  L   ++  + + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 28/187 (14%), Positives = 71/187 (37%), Gaps = 16/187 (8%)

Query: 69  KLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT 128
             L+    + +   + +   +   L  + + + N+  +    +    +++ L I++   T
Sbjct: 24  AYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT 79

Query: 129 GNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTP 188
            N +  P+  L +++ L++          +  L   ++L + D  ++     +    +  
Sbjct: 80  -NYN--PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAH-DDSILTKINT 134

Query: 189 KFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLS--ENNTKLQTLVQV 246
             ++NSI LS+   +T    L    +LK +N+    +           E+  KL  L   
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-----YRGIEDFPKLNQLYAF 189

Query: 247 NNYLSGI 253
           +  + G 
Sbjct: 190 SQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 15/169 (8%)

Query: 331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN 390
            + +L  + L   + + ++   +   +    L +++ H +   P  +  LS  E + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 391 NHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT 450
             +          L  L +LDIS      S+ +  N         L  ++ +DLS N   
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT--------LPKVNSIDLSYNGAI 149

Query: 451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG 499
            +I   +  L  + +LN+  + +         +  +   L      + G
Sbjct: 150 TDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 6/155 (3%)

Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
            LTY+ +++        +    ++  L ++           ++ G  +L  L +    + 
Sbjct: 45  SLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNY-NPIS-GLSNLERLRIMGKDVT 101

Query: 323 GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSV 382
                    LT+L  L +  +     I   ++       + LS N     I   L  L  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPE 160

Query: 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNI 417
            + + +  + +     +E      L  L    + I
Sbjct: 161 LKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
           +NS++ + L+   +T    +       I  L +++   T    +  S L   E L +   
Sbjct: 43  MNSLTYITLANINVTDLTGI--EYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTPD 527
            +T    P L  L +L +  ++H+        
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRA-----MDGTALDKNFLQVI 62
           +  L+NLE L +         + +++           G  +     +  +A D + L  I
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLS-----------GLTSLTLLDISHSAHDDSILTKI 132

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
            ++  +  + LS +     I    L     L+ L++  + ++      + +   L  L  
Sbjct: 133 NTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188

Query: 123 SSNQLTG 129
            S  + G
Sbjct: 189 FSQTIGG 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 1e-12
 Identities = 93/457 (20%), Positives = 147/457 (32%), Gaps = 123/457 (26%)

Query: 50  DGTALDKNFLQVIKSMTSLK--LLSLSNSR---LNG------TILDQGLCEFVHLQELHV 98
           D     K  +  ++    L+  LL L  ++   ++G      T +   +C    +Q    
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM- 180

Query: 99  DHNNLYGVPPWC-LGN-------MTSLQVL--NISSNQLTGNISSPPLKHLKSIQELKLS 148
               ++    W  L N       +  LQ L   I  N  + +  S  +K      + +L 
Sbjct: 181 -DFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 149 NNYFQI---PISLGPLYNHSNLKIFDSENN--QIYAQTESHSLTPKFQLNSIILSHGS-- 201
               +       L  L N  N K +++ N   +I   T    +T    L++   +H S  
Sbjct: 236 R-LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLD 292

Query: 202 ----GVT-------FPKFLYHQ-HDLKH----VNLSHINLRGE--------FPNWLSENN 237
                +T         K+L  +  DL       N   +++  E        + NW   N 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 238 TKLQTLVQVN-NYLSGIFQMPKHARRHLTYLDVSDNFFQ--VHIPVGNMKSLSVL----- 289
            KL T+++ + N L      P   R+    L V    F    HIP      LS++     
Sbjct: 353 DKLTTIIESSLNVLE-----PAEYRKMFDRLSV----FPPSAHIP---TILLSLIWFDVI 400

Query: 290 ---------DLSKNRLIGKIPERLAMGCFSLRYLVL---SNNKMKGHI-------FSKKI 330
                     L K  L+ K P+   +   S+ YL L     N+   H          K  
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 331 NLTNLWRLQLDG--NHFIG---EIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED 385
           +  +L    LD      IG   +  E      LF  ++L    L  KI R          
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDS------- 511

Query: 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP 422
                 +  G I      LN LQ L   K  I  + P
Sbjct: 512 ---TAWNASGSI------LNTLQQLKFYKPYICDNDP 539

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 8e-07
 Identities = 57/361 (15%), Positives = 117/361 (32%), Gaps = 86/361 (23%)

Query: 170 FDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEF 229
             +E  Q    T  +      Q + +   +     F K  Y+   L+        LR   
Sbjct: 98  IKTEQRQPSMMTRMYI----EQRDRL---YNDNQVFAK--YNVSRLQPYL----KLR--- 141

Query: 230 PNWLSENNTKLQTLVQVNNYLSGIFQMP---KH--ARRHLTYLDVSDNF-FQVH-IPVGN 282
              L E        ++    +  I  +    K   A        V     F++  + + N
Sbjct: 142 -QALLE--------LRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG---HIFSKK------INLT 333
             S   +     +L+ +I             + L  + ++     +   K      + L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 334 NLWRLQLDGNHFIGEIPESLS-NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
           N+     +   +      + + +C +   L  +      ++  +L   + +   +  ++H
Sbjct: 252 NVQ----NAKAW-----NAFNLSCKI---LLTTRFK---QVTDFLSAATTTHISL--DHH 294

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
                P E   L  L+ LD   +     LP       +    P        LS   +  E
Sbjct: 295 SMTLTPDEVKSL-LLKYLDCRPQ----DLPR-----EVLTTNPRR------LS---IIAE 335

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT-----GKIPPQLVE 507
             +R G  T  +  +V+ +KLT +I S+ + L+  E   + +++L+       IP  L+ 
Sbjct: 336 S-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLS 393

Query: 508 L 508
           L
Sbjct: 394 L 394

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 2e-11
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)

Query: 5   LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS 64
           L  +  +  L+ L  +     +    ++    P         R+            +   
Sbjct: 386 LTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRSKFL----LENSVLKME 439

Query: 65  MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
              +++L L++  L  T+L   L + + +  L + HN L  +PP  L  +  L+VL  S 
Sbjct: 440 YADVRVLHLAHKDL--TVLC-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASD 495

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           N L    +   + +L  +QEL L NN  Q   ++ PL +   L + + + N +
Sbjct: 496 NALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 3e-10
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS--- 64
           L   + L+ +    + +   L     +    +   +   R +    L    L V+     
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH---LAHKDLTVLCHLEQ 461

Query: 65  MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS 124
           +  +  L LS++RL    L   L     L+ L    N L  V    + N+  LQ L + +
Sbjct: 462 LLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCN 517

Query: 125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLY 162
           N+L  + +  PL     +  L L  N     +      
Sbjct: 518 NRLQQSAAIQPLVSCPRLVLLNLQGN----SLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 40/205 (19%), Positives = 71/205 (34%), Gaps = 18/205 (8%)

Query: 331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI---PRWLGNLSVSEDVI 387
               L+R +L        +   L +C     L   +      I    R L  L   ++ +
Sbjct: 347 TDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSG------ 441
              + L+   PM    L+ L+   + + ++     +      +   K L  +        
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL-AHKDLTVLCHLEQLLL 464

Query: 442 ---LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
              LDLS N+L   +P  +  L  +  L  S N L    +   +NL + + L L  N+L 
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQ 521

Query: 499 G-KIPPQLVELNALAVFSVAHNKLS 522
                  LV    L + ++  N L 
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 43/241 (17%), Positives = 77/241 (31%), Gaps = 33/241 (13%)

Query: 87  LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELK 146
           +      Q+  V   +              L    +S  +    +    L+  K +QEL+
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS--TVLQSELESCKELQELE 378

Query: 147 LSNNYFQI-----PISLGPLYNH-------SNLKIFDSENNQIYAQTESHSL------TP 188
             N +  +       +L PL          S LK  D           S  L        
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438

Query: 189 KFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNN 248
           ++    ++      +T    L     + H++LSH  LR   P  L      L+ L   +N
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDN 496

Query: 249 Y---LSGIFQMPKHARRHLTYLDVSDNF---FQVHIPVGNMKSLSVLDLSKNRLIGKIPE 302
               + G+  +P+     L  L + +N         P+ +   L +L+L  N L  +   
Sbjct: 497 ALENVDGVANLPR-----LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

Query: 303 R 303
           +
Sbjct: 552 Q 552

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 72/440 (16%), Positives = 127/440 (28%), Gaps = 87/440 (19%)

Query: 115 TSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGP---------LYNHS 165
             +Q L+I   +L+    +  L  L+  Q ++L +        L           L  + 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC------GLTEARCKDISSALRVNP 56

Query: 166 NLKIFDSENNQIYA----------QTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDL 215
            L   +  +N++            QT S  +  K  L +  L+          L     L
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ-KLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 216 KHVNLSHINLRGEFPNWLSE----NNTKLQTLVQVNNYLS-----GIFQMPKHARRHLTY 266
           + ++LS   L       L E       +L+ L      LS      +  + +  +     
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA-KPDFKE 174

Query: 267 LDVSDNFFQ-------VHIPVGNMKSLSVLDLSKNRLIGKIPERLA---MGCFSLRYLVL 316
           L VS+N                +   L  L L    +       L        SLR L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 317 SNNK-----MKGHIFSKKINLTNLWRLQLDGNHF----IGEIPESLSNCNLFGGLYLSDN 367
            +NK     M           + L  L +          G++   L        L L+ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 368 HLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNP 427
            L  +     G   + E ++ P   LE  + ++ C             +    L      
Sbjct: 295 ELGDE-----GARLLCETLLEPGCQLE-SLWVKSCSFT-----AACCSHFSSVLAQN--- 340

Query: 428 FSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG-----NLTRIHTLNVSHNKLT----GLIL 478
                      +  L +S N+L       +        + +  L ++   ++      + 
Sbjct: 341 ---------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 479 STFSNLKQTESLDLSYNKLT 498
           +T         LDLS N L 
Sbjct: 392 ATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 56/373 (15%), Positives = 116/373 (31%), Gaps = 65/373 (17%)

Query: 56  KNFLQVIKSMTSLKLLSLSNSRLNGTILDQG---LCEFV-----HLQELHVDHNNLYGVP 107
           K+    ++   +L  L+L ++ L     D G   + + +      +Q+L + +  L    
Sbjct: 46  KDISSALRVNPALAELNLRSNELG----DVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGA 100

Query: 108 PW-----CLGNMTSLQVLNISSNQLTG----NISSPPLKHLKSIQELKLSNNYF--QIPI 156
                   L  + +LQ L++S N L       +    L     +++L+L           
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 157 SLGP-LYNHSNLKIFDSENNQIY---AQTESHSL-TPKFQLNSIILSH-----GSGVTFP 206
            L   L    + K     NN I     +     L     QL ++ L        +     
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 207 KFLYHQHDLKHVNLSHINLRGEFPNWLSE----NNTKLQTLVQVNNYLS-----GIFQMP 257
             +  +  L+ + L    L       L       +++L+TL      ++      + ++ 
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 258 KHARRHLTYLDVSDNFFQ----VHIPVG---NMKSLSVLDLSKNRLIGKIPERLA---MG 307
           +  +  L  L ++ N         +          L  L +             +     
Sbjct: 281 RA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 308 CFSLRYLVLSNNKMKG---HIFSK--KINLTNLWRLQLDGNHFIGE-----IPESLSNCN 357
              L  L +SNN+++        +      + L  L L     + +     +  +L   +
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANH 398

Query: 358 LFGGLYLSDNHLS 370
               L LS+N L 
Sbjct: 399 SLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 61  VIKSMTSLKLLSLSNSRLN---GTILDQGLCEFVHLQELHVDHNNL--YGVPPWCLG--- 112
           +++    L+ L + +        +     L +   L EL + +N L   GV   C G   
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 113 NMTSLQVLNISSNQLT----GNISSPPLKHLKSIQELKLSNNYFQ----IPISLGPLYNH 164
             + L+VL ++   ++     ++++  L    S++EL LSNN       + +        
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426

Query: 165 SNLKIFDSENNQI 177
             L+     +   
Sbjct: 427 CLLEQLVLYDIYW 439

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 53/245 (21%)

Query: 264 LTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK 320
              LD+S N  + H+      +   L VLDLS+   I  I +        L  L+L+ N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87

Query: 321 MK---GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG------LYLSDNHLSG 371
           ++      FS    L++L +L     + +  +          G       L ++ N +  
Sbjct: 88  IQSLALGAFS---GLSSLQKLVAVETN-LASLEN-----FPIGHLKTLKELNVAHNLIQ- 137

Query: 372 KIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSI 430
                        +               F  L  L+ LD+S  N   S+          
Sbjct: 138 SFK--------LPEY--------------FSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ 174

Query: 431 KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESL 490
                L+    LDLS N +   I        R+  L +  N+L  +    F  L   + +
Sbjct: 175 MPLLNLS----LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 491 DLSYN 495
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 60/261 (22%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
               + L +  N L  +  +   +   LQVL++S  ++   I     + L  +  L L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPK-FQLNSIILSHGSGVTFPKF 208
           N  Q  ++LG     S+L+   +    +       SL                 +   K 
Sbjct: 86  NPIQS-LALGAFSGLSSLQKLVAVETNL------ASLENFPI----------GHLKTLKE 128

Query: 209 LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLD 268
           L     + H  +    L   F      N T L+ L   +N +  I        R L  + 
Sbjct: 129 LN----VAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMP 176

Query: 269 VSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCF---SLRYLVLSNNKMK--- 322
           + +                 LDLS N +       +  G F    L+ L L  N++K   
Sbjct: 177 LLNL---------------SLDLSLNPM-----NFIQPGAFKEIRLKELALDTNQLKSVP 216

Query: 323 GHIFSKKINLTNLWRLQLDGN 343
             IF     LT+L ++ L  N
Sbjct: 217 DGIFD---RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEFVH---LQELHVDHNNLYG 105
           L +  +Q I     +S++ L  L L+ + +    L  G   F     LQ+L     NL  
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGA--FSGLSSLQKLVAVETNLAS 114

Query: 106 VPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHS 165
           +  + +G++ +L+ LN++ N +          +L +++ L LS+N  Q  I    L    
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLH 173

Query: 166 NLKIFDSE----NNQI 177
            + + +       N +
Sbjct: 174 QMPLLNLSLDLSLNPM 189

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 30/155 (19%)

Query: 9   HNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKS---- 64
             L++L+ L    +  +++ L++               + +    +  N +Q  K     
Sbjct: 97  SGLSSLQKLVAVET--NLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 65  --MTSLKLLSLSNSRLNGTILDQGLCEFVHLQ-------ELHVDHNNLYGVPPWCLGNMT 115
             +T+L+ L LS++++    +         L         L +  N +  + P     + 
Sbjct: 146 SNLTNLEHLDLSSNKI--QSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 116 SLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNN 150
            L+ L + +NQL  ++       L S+Q++ L  N
Sbjct: 201 RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 39/174 (22%), Positives = 59/174 (33%), Gaps = 38/174 (21%)

Query: 333 TNLWRLQLDGNHFIGEIPE-SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN 391
            +   L L  N  +  +   S  +      L LS   +           ++ +       
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGA----- 71

Query: 392 HLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG 451
                    +  L+ L  L ++  N   SL      FS      L+S+  L      L  
Sbjct: 72  ---------YQSLSHLSTLILTG-NPIQSLAL--GAFS-----GLSSLQKLVAVETNLA- 113

Query: 452 EIPLRI-GNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKLTGKIPP 503
            +     G+L  +  LNV+HN +    L   FSNL   E LDLS NK+   I  
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 442 LDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500
           LDLS  ++   I      +L+ + TL ++ N +  L L  FS L   + L      L   
Sbjct: 57  LDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-S 114

Query: 501 IPPQL-VELNALAVFSVAHNKLS 522
           +       L  L   +VAHN + 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQ 137

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 12/119 (10%)

Query: 59  LQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQ 118
           L  +K +T L+ LS++ +R    + +        L  L +D+N L       L ++ +L+
Sbjct: 78  LSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLE 131

Query: 119 VLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           +L+I +N+L    S   L  L  ++ L L  N  +I  + G L     +   D    + 
Sbjct: 132 ILSIRNNKLK---SIVMLGFLSKLEVLDLHGN--EI-TNTGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 44/221 (19%)

Query: 86  GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL 145
                 +  + ++   ++  +       ++ +Q  N  ++ +  +++   ++   +++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKEL 68

Query: 146 KLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF 205
            LS+N  QI   L PL + + L+      N++       +L                   
Sbjct: 69  HLSHN--QI-SDLSPLKDLTKLEELSVNRNRL------KNLNGIPSAC------------ 107

Query: 206 PKFLYHQHDLKHVNLSHINLRGEFPNWLS--ENNTKLQTLVQVNNYLSGIFQMPKHARRH 263
                    L  + L +  LR           +   L+ L   NN L  I  +       
Sbjct: 108 ---------LSRLFLDNNELRD-----TDSLIHLKNLEILSIRNNKLKSIVMLGFL--SK 151

Query: 264 LTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERL 304
           L  LD+  N       +  +K ++ +DL+  + + +  +  
Sbjct: 152 LEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/196 (23%), Positives = 89/196 (45%), Gaps = 32/196 (16%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
            K ++ ++  +  NS +  ++   G+  F +L+ELH+ HN +  + P  L ++T L+ L+
Sbjct: 37  QKELSGVQNFNGDNSNIQ-SL--AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91

Query: 122 ISSNQLTG-----------------NISS-PPLKHLKSIQELKLSNNYFQIPISLGPLYN 163
           ++ N+L                    +     L HLK+++ L + NN  +   S+  L  
Sbjct: 92  VNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGF 148

Query: 164 HSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVN-LSH 222
            S L++ D   N+I   T +  LT   ++N I L+    V  P  + +Q +L   N +  
Sbjct: 149 LSKLEVLDLHGNEI---TNTGGLTRLKKVNWIDLTGQKCVNEP--VKYQPELYITNTVKD 203

Query: 223 INLRGEFPNWLSENNT 238
            + R   P ++S   +
Sbjct: 204 PDGRWISPYYISNGGS 219

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 34/236 (14%), Positives = 77/236 (32%), Gaps = 46/236 (19%)

Query: 263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK 322
           +    ++        +    +  +   +   + +  +    +     +L+ L LS+N++ 
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLAGMQ-FFTNLKELHLSHNQIS 76

Query: 323 GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSV 382
               S   +LT L  L ++ N  +  +   + +  L   L+L +N L             
Sbjct: 77  D--LSPLKDLTKLEELSVNRNR-LKNL-NGIPSACL-SRLFLDNNELR------------ 119

Query: 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL 442
                      +         L  L+IL I    +           SI     L+ +  L
Sbjct: 120 ---------DTDS-----LIHLKNLEILSIRNNKLK----------SIVMLGFLSKLEVL 155

Query: 443 DLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
           DL  N++T    L    L +++ ++++  K     +     L  T ++     +  
Sbjct: 156 DLHGNEITNTGGL--TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 48/233 (20%)

Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
           P   + +    +L K  +   + ++       ++     N+ ++  +   +   TNL  L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ-SLAGMQ-FFTNLKEL 68

Query: 339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP 398
            L  N  I ++   L +      L ++ N L                             
Sbjct: 69  HLSHNQ-ISDL-SPLKDLTKLEELSVNRNRLKN--------------------------- 99

Query: 399 MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG 458
           +       L  L +    +                  L ++  L +  NKL   + L  G
Sbjct: 100 LNGIPSACLSRLFLDNNELR----------DTDSLIHLKNLEILSIRNNKLKSIVML--G 147

Query: 459 NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNAL 511
            L+++  L++  N++T       + LK+   +DL+  K   +      EL   
Sbjct: 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 45/192 (23%)

Query: 331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN 390
            L N  +  L     + ++  S    +        ++++                     
Sbjct: 17  GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNIQ-------------------- 54

Query: 391 NHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT 450
             L G           L+ L +S   I     S  +P        L  +  L ++ N+L 
Sbjct: 55  -SLAG-----MQFFTNLKELHLSHNQI-----SDLSPLK-----DLTKLEELSVNRNRLK 98

Query: 451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNA 510
               +    L+    L + +N+L      +  +LK  E L +  NKL   I   L  L+ 
Sbjct: 99  NLNGIPSACLS---RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIVM-LGFLSK 151

Query: 511 LAVFSVAHNKLS 522
           L V  +  N+++
Sbjct: 152 LEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 16/166 (9%)

Query: 235 ENNTKLQTLVQVNNY---LSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDL 291
           +  T L+ L   +N    LS +  + K     L  L V+ N  +  +       LS L L
Sbjct: 60  QFFTNLKELHLSHNQISDLSPLKDLTK-----LEELSVNRNRLKN-LNGIPSACLSRLFL 113

Query: 292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPE 351
             N L  +  + L     +L  L + NNK+K         L+ L  L L GN  I     
Sbjct: 114 DNNEL--RDTDSLI-HLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNE-ITNT-G 166

Query: 352 SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI 397
            L+       + L+      +  ++   L ++  V  P+     P 
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 28/168 (16%)

Query: 362 LYLSDNHLS---GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF 418
           +     +L+     +P+    L +S       N L             L  L++ +    
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILHLS------ENLLYTFSLATLMPYTRLTQLNLDR-AEL 67

Query: 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL 478
             L              L  +  LDLS N+L   +PL    L  +  L+VS N+LT L L
Sbjct: 68  TKLQ----VDG-----TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 479 STFSNLKQTESLDLSYNKLTGKIPP----QLVELNALAVFSVAHNKLS 522
                L + + L L  N+L   +PP       +L  L   S+A+N L+
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL---SLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 44/234 (18%), Positives = 70/234 (29%), Gaps = 42/234 (17%)

Query: 264 LTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG 323
              ++         +P    K  ++L LS+N  +        M    L  L L   ++  
Sbjct: 12  HLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 324 -HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSV 382
             +      L  L  L L  N  +  +P           L +S N L+          S+
Sbjct: 70  LQVDGT---LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLT----------SL 115

Query: 383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL 442
                                L  LQ L +   N   +LP      +     P   +  L
Sbjct: 116 PLGA--------------LRGLGELQELYLKG-NELKTLPP--GLLT-----PTPKLEKL 153

Query: 443 DLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
            L+ N LT E+P  +   L  + TL +  N L  +    F +        L  N
Sbjct: 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF-AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 51/234 (21%), Positives = 82/234 (35%), Gaps = 42/234 (17%)

Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL 338
            V  + S   ++  K  L   +P  L         L LS N +     +  +  T L +L
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP 398
            LD    + ++    +   L G L LS N L                           +P
Sbjct: 61  NLDRAE-LTKLQVDGTLPVL-GTLDLSHNQLQS-------------------------LP 93

Query: 399 MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI- 457
           +    L  L +LD+S  N   SLP             L  +  L L  N+L   +P  + 
Sbjct: 94  LLGQTLPALTVLDVSF-NRLTSLPL--GALR-----GLGELQELYLKGNELK-TLPPGLL 144

Query: 458 GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNAL 511
               ++  L++++N LT L     + L+  ++L L  N L   IP      + L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 7/138 (5%)

Query: 43  FIGFRAMDGTALDKNFLQVI---KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVD 99
            + +  +    LD+  L  +    ++  L  L LS+++L    L         L  L V 
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVS 108

Query: 100 HNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLG 159
            N L  +P   L  +  LQ L +  N+L   +    L     +++L L+NN     +  G
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAG 166

Query: 160 PLYNHSNLKIFDSENNQI 177
            L    NL     + N +
Sbjct: 167 LLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 31/142 (21%), Positives = 46/142 (32%), Gaps = 20/142 (14%)

Query: 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLI 297
                L    N L             LT L++           G +  L  LDLS N+L 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL- 89

Query: 298 GKIPERLAMGCFSLRYLVLSNNKMKG---HIFSKKINLTNLWRLQLDGNHFIGEIPESLS 354
             +P        +L  L +S N++             L  L  L L GN  +  +P    
Sbjct: 90  QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRG---LGELQELYLKGNE-LKTLPP--- 141

Query: 355 NCNLFGG------LYLSDNHLS 370
              L         L L++N+L+
Sbjct: 142 --GLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 16/106 (15%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCEF---VHLQELHVDHNNLYG 105
           +  N L  +     + +  L+ L L  + L    L  GL        L++L + +NNL  
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNEL--KTLPPGL--LTPTPKLEKLSLANNNLTE 162

Query: 106 VPPWCLGNMTSLQVLNISSNQLTGNISSPP-LKHLKSIQELKLSNN 150
           +P   L  + +L  L +  N L    + P        +    L  N
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 52/261 (19%), Positives = 80/261 (30%), Gaps = 72/261 (27%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
            S   ++     L  T L   L        LH+  N LY      L   T L  LN+   
Sbjct: 10  ASHLEVNCDKRNL--TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQ-IPISLGPLYNHSNLKIFDSENNQIYAQTESH 184
           +LT          L  +  L LS+N  Q +P+    L     L + D   N++ +     
Sbjct: 66  ELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTS----- 114

Query: 185 SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLV 244
                       L  G                   L  +        +L  N  +L+TL 
Sbjct: 115 ------------LPLG---ALRGL---------GELQEL--------YLKGN--ELKTL- 139

Query: 245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIP 301
                  G+          L  L +++N     +P G    +++L  L L +N L     
Sbjct: 140 -----PPGLLT----PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL----- 184

Query: 302 ERLAMGCF---SLRYLVLSNN 319
             +  G F    L +  L  N
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGN 205

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI 122
           ++ + +K L L NSR N   L+    EF  L+ L   +  L  +    L  +  L+ L +
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLEL 71

Query: 123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           S N+++G       +   ++  L LS N  +   ++ PL    NLK  D  N ++
Sbjct: 72  SDNRVSG-GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
                 L+ LS  N  L  T +   L +   L++L +  N + G          +L  LN
Sbjct: 38  TDEFEELEFLSTINVGL--TSIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLY 162
           +S N++    +  PLK L++++ L L N      ++    Y
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFNC----EVTNLNDY 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 262 RHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321
             L +L   +        +  +  L  L+LS NR +    E LA  C +L +L LS NK+
Sbjct: 42  EELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 322 KG-HIFSKKINLTNLWRLQLDGN 343
           K          L NL  L L   
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 432 QGKPLNSMSGLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESL 490
           + +  + +  L L  ++   G++         +  L+  +  LT   ++    L + + L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKL 69

Query: 491 DLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
           +LS N+++G +     +   L   +++ NK+ 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 16/167 (9%)

Query: 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLT---YLDVS 270
               ++LSH NL      W     T L +L+  +N+L+ I      A   +    YLD+S
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI---SSEAFVPVPNLRYLDLS 96

Query: 271 DNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GH 324
            N     +      ++++L VL L  N  I  +          L+ L LS N++      
Sbjct: 97  SNHLHT-LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 325 IFSKKINLTNLWRLQLDGNHFIGEIPESLSNCN--LFGGLYLSDNHL 369
           +      L  L  L L  N         L      +  GLYL +N L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 262 RHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN 318
            +L  L +S N     I       + +L  LDLS N L   + E L     +L  L+L N
Sbjct: 64  TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYN 121

Query: 319 NKMK---GHIFSKKINLTNLWRLQLDGNHFIGEIPE----SLSNCNLFGGLYLSDNHLSG 371
           N +     + F    ++  L +L L  N  I   P       +       L LS N L  
Sbjct: 122 NHIVVVDRNAFE---DMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 372 KIPRWLGNLS 381
                L  L 
Sbjct: 178 LPLTDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GN 459
             +L  L  L +S  ++   + S    F      P+ ++  LDLS N L   +   +  +
Sbjct: 60  PTRLTNLHSLLLSHNHL-NFISS--EAFV-----PVPNLRYLDLSSNHLH-TLDEFLFSD 110

Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQ----LVELNALAVFS 515
           L  +  L + +N +  +  + F ++ Q + L LS N+++ + P +      +L  L +  
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD 169

Query: 516 VAHNKLSGKTPDWVAQFA--TFNGSSYDGNPFLSSSCN 551
           ++ NKL       + +      NG     NP L   C 
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP-LECDCK 206

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
           +   LL LS++ L+    +       +L  L + HN+L  +       + +L+ L++SSN
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
            L   +       L++++ L L NN+  + +      + + L+      NQI
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 442 LDLSCNKLTGEIPLRI--GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG 499
           LDLS N L+  +        LT +H+L +SHN L  +    F  +     LDLS N L  
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 500 KIPPQ-LVELNALAVFSVAHNKLS 522
            +      +L AL V  + +N + 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQG-LCEFVHLQELHVDHNNLYGVP 107
           L  N L  I       + +L+ L LS++ L    LD+    +   L+ L + +N++  V 
Sbjct: 71  LSHNHLNFISSEAFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVD 128

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISS---PPLKHLKSIQELKLSNN 150
                +M  LQ L +S NQ++             L  +  L LS+N
Sbjct: 129 RNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 29/156 (18%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI----- 62
              LTNL +L L ++  H++ + S A         F+    +    L  N L  +     
Sbjct: 60  PTRLTNLHSLLLSHN--HLNFISSEA---------FVPVPNLRYLDLSSNHLHTLDEFLF 108

Query: 63  KSMTSLKLLSLSNSRLNGTILDQGLCEF---VHLQELHVDHNNLYGVPP---WCLGNMTS 116
             + +L++L L N+ +   ++D+    F     LQ+L++  N +   P         +  
Sbjct: 109 SDLQALEVLLLYNNHI--VVVDRNA--FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 117 LQVLNISSNQLTGNISSPPLKHLKSIQE--LKLSNN 150
           L +L++SSN+L   +    L+ L +  +  L L NN
Sbjct: 165 LMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126
           +++ L L N + N   ++    EFV+L+ L + +  L  V    L  +  L+ L +S N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENR 82

Query: 127 LTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           +         + L ++  L LS N  +   +L PL     LK  D  N ++
Sbjct: 83  IF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
                +L+ LSL N  L    +   L +   L++L +  N ++G        + +L  LN
Sbjct: 45  TAEFVNLEFLSLINVGL--ISVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLY 162
           +S N+L    +  PLK L+ ++ L L N      ++    Y
Sbjct: 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLNDY 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 262 RHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321
            +L +L + +        +  +  L  L+LS+NR I    + LA    +L +L LS NK+
Sbjct: 49  VNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 322 KG-HIFSKKINLTNLWRLQLDGN 343
           K          L  L  L L   
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 431 KQGKPLNSMSGLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTES 489
            + +   ++  L L   K   G+I         +  L++ +  L    +S    L + + 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKK 75

Query: 490 LDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS 522
           L+LS N++ G +     +L  L   +++ NKL 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
           + ++ + K L+LS + +   I    L    +L+ L +  N +  +         +L+ L 
Sbjct: 44  LSTLKACKHLALSTNNI-EKI--SSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELW 99

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           IS NQ+  ++S   ++ L +++ L +SNN       +  L     L+      N +Y   
Sbjct: 100 ISYNQIA-SLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 182 ESHSLTP 188
           + ++ T 
Sbjct: 157 KENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 49  MDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTI-----LDQGLCEFVHLQELHVDHNNL 103
           M      K+ +++ +   S+         L+G I     +D  L      + L +  NN+
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 104 YGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHL-KSIQELKLSNNYFQIPISLGPLY 162
             +    L  M +L++L++  N +   I    L  +  +++EL +S N      SL  + 
Sbjct: 61  EKISS--LSGMENLRILSLGRNLIK-KIE--NLDAVADTLEELWISYNQIA---SLSGIE 112

Query: 163 NHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSH 199
              NL++    NN+I    E   L    +L  ++L+ 
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
           L      +  ++   +  L     L +S N +    +S+ S ++    L L  N +  KI
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE--KISSLSGMENLRILSLGRNLIK-KI 85

Query: 502 PPQLVELNALAVFSVAHNKLS 522
                  + L    +++N+++
Sbjct: 86  ENLDAVADTLEELWISYNQIA 106

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 28/171 (16%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 262 RHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN 318
            +++ + VS +     +      N+  ++ +++   R +  I          L++L + N
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 319 NKMKGHI--FSKKINLTNLWRLQLDGNHFIGEIPESL--SNCNLFGGLYLSDNHLSGKIP 374
             +K      +K  +    + L++  N ++  IP +     CN    L L +N  +  + 
Sbjct: 115 TGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172

Query: 375 RW-LGNLSVSEDVIMPNNHLEGPIPMEFCQL-NFLQILDISKKNIFGSLPS 423
            +      +    +  N +L       F  + +   +LD+S +    +LPS
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS-QTSVTALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 34/215 (15%)

Query: 93  LQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF 152
            Q L +   +L  +P     N+ ++  + +S +     + S    +L  +  +++ N   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 153 QIPISLGPLYNHSNLKIFDSENNQIY---AQTESHSLTPKFQL----NSIILSHGSGVTF 205
              I    L     LK     N  +      T+ +S    F L    N  + S       
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA-- 150

Query: 206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSE------NNTKLQTL-VQVNNYLSGIFQMPK 258
             F    ++   + L +        N  +       N TKL  + +  N YL+ I    K
Sbjct: 151 --FQGLCNETLTLKLYN--------NGFTSVQGYAFNGTKLDAVYLNKNKYLTVI---DK 197

Query: 259 HA----RRHLTYLDVSDNFFQVHIPVGNMKSLSVL 289
            A        + LDVS       +P   ++ L  L
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 37/244 (15%), Positives = 78/244 (31%), Gaps = 51/244 (20%)

Query: 262 RHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN 318
                L + +   +  IP     N+ ++S + +S +  + ++          + ++ + N
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 319 NKMKGHI----FSKKINLTNLWRLQLDGNHFIGEIPE--SLSNCNLFGGLYLSDNHLSGK 372
            +   +I          L  L  L +     +   P+   + + ++F  L ++DN     
Sbjct: 90  TRNLTYIDPDALK---ELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDN----- 140

Query: 373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQL-NFLQILDISKKNIFGSLPSC-FNPFSI 430
                              ++       F  L N    L +   N F S+    FN   +
Sbjct: 141 ------------------PYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKL 181

Query: 431 KQGKPLNSMSGLDLSCNKLTGEIPLRI--GNLTRIHTLNVSHNKLTGLILSTFSNLKQTE 488
                      + L+ NK    I      G  +    L+VS   +T L      +LK+  
Sbjct: 182 DA---------VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

Query: 489 SLDL 492
           + + 
Sbjct: 233 ARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 46/264 (17%), Positives = 85/264 (32%), Gaps = 41/264 (15%)

Query: 86  GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL 145
             CE    ++  V   ++  +P        S Q L +    L   I S    +L +I  +
Sbjct: 6   PPCECHQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRI 60

Query: 146 KLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF 205
            +S +     +     YN S +   +  N +               L  I          
Sbjct: 61  YVSIDVTLQQLESHSFYNLSKVTHIEIRNTR--------------NLTYI---------D 97

Query: 206 PKFLYHQHDLKHVNLSHINLRGEFPN--WLSENNTKLQTLVQVNNYLSGI-FQMPKHARR 262
           P  L     LK + + +  L+  FP+   +   +      +  N Y++ I     +    
Sbjct: 98  PDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156

Query: 263 HLTYLDVSDNFFQVHIPVG--NMKSLSVLDLSKNRLIGKIPERLAMGCFS-LRYLVLSNN 319
               L + +N F   +     N   L  + L+KN+ +  I +    G +S    L +S  
Sbjct: 157 ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 320 KMK---GHIFS--KKINLTNLWRL 338
            +           K++   N W L
Sbjct: 216 SVTALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 37/222 (16%), Positives = 74/222 (33%), Gaps = 44/222 (19%)

Query: 310 SLRYLVLSNNKMK---GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSD 366
           S + L L    ++    H FS   NL N+ R+ +  +  + ++       + F  L    
Sbjct: 32  STQTLKLIETHLRTIPSHAFS---NLPNISRIYVSIDVTLQQLES-----HSFYNLSK-- 81

Query: 367 NHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN 426
                     + ++ +         +L    P    +L  L+ L I         P    
Sbjct: 82  ----------VTHIEIRN-----TRNLTYIDPDALKELPLLKFLGIFN-TGLKMFPDLTK 125

Query: 427 PFSIKQGKPLNSMSGLDLSCNKLTGEIPLR----IGNLTRIHTLNVSHNKLTGLILSTFS 482
            +S       +    L+++ N     IP+     + N T   TL + +N  T +    F+
Sbjct: 126 VYS------TDIFFILEITDNPYMTSIPVNAFQGLCNETL--TLKLYNNGFTSVQGYAFN 177

Query: 483 NLKQTESLDLSYNKLTGKIPPQLVE--LNALAVFSVAHNKLS 522
             K    + L+ NK    I         +  ++  V+   ++
Sbjct: 178 GTKLDA-VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 57  NFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTS 116
           + L  +    +L  L + N +    +  + L     L+ L +  + L  V P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 117 LQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ 153
           L  LN+S N L  ++S   ++ L S+QEL LS N   
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 434 KPLNSMSGLDLSCNKLTGEIPLR-IGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDL 492
               +++ L +   +    + LR +  L  +  L +  + L  +    F    +   L+L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 493 SYNKLTGKIPPQLVELNALAVFSVAHNKL 521
           S+N L   +  + V+  +L    ++ N L
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 282 NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTNLWRL 338
             ++L+ L +   + +  +  R   G   LR L +  + ++      F        L RL
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---FTPRLSRL 85

Query: 339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNHL 369
            L  N       +++   +L   L LS N L
Sbjct: 86  NLSFNALESLSWKTVQGLSLQ-ELVLSGNPL 115

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 50/342 (14%), Positives = 101/342 (29%), Gaps = 71/342 (20%)

Query: 93  LQELHVDHNNL--YGVPPWC--LGNMTSLQVLNISSNQLTGN----ISSPPLKHLKSIQE 144
           ++   +  + +           L    S++ + +S N +       +S   +   K ++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE-NIASKKDLEI 64

Query: 145 LKLSNNYFQIPISLGP---------LYNHSNLKIFDSENNQIY---AQTESHSLTPKFQL 192
            + S+ +        P         L     L      +N       +     L+    L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 193 NSIILSH------G--------SGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE--- 235
             + L +                 +   K   +   L+ +      L        ++   
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 236 NNTKLQTLVQVNNYLS--GIFQMPKHARRH---LTYLDVSDNFFQVHIPVG--------- 281
           ++  L T+  V N +   GI  +      +   L  LD+ DN F     +G         
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT---HLGSSALAIALK 241

Query: 282 NMKSLSVLDLSKNRL----IGKIPERLAMGCF-SLRYLVLSNNKMK---GHIFSK--KIN 331
           +  +L  L L+   L       + +  +      L+ L L  N+++              
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 332 LTNLWRLQLDGNHF------IGEIPESLSNCNLFGGLYLSDN 367
           + +L  L+L+GN F      + EI E  S         L D 
Sbjct: 302 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 42/282 (14%), Positives = 78/282 (27%), Gaps = 65/282 (23%)

Query: 60  QVIKSMTSLKLLSLSNSRLN---------GTILDQGLCEFVHLQELHVDHNNL--YGVPP 108
           + I S   L++   S+               +L Q L +   L  + +  N        P
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 109 WC--LGNMTSLQVLNISSNQ------------LTGNISSPPLKHLKSIQELKLSNNYFQ- 153
               L   T L+ L + +N             L     +   K+   ++ +    N  + 
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 154 ---IPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLY 210
                 +     +H  L       N I  +                   G      + L 
Sbjct: 174 GSMKEWAKT-FQSHRLLHTVKMVQNGIRPE-------------------GIEHLLLEGLA 213

Query: 211 HQHDLKHVNLSHINLRGEFPNWLSE---NNTKLQTLVQVNNYLS-----GIFQM-PKHAR 261
           +  +LK ++L          + L+    +   L+ L   +  LS      +     K   
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 262 RHLTYLDVSDNFFQ-------VHIPVGNMKSLSVLDLSKNRL 296
             L  L +  N  +         +    M  L  L+L+ NR 
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 40/288 (13%), Positives = 78/288 (27%), Gaps = 82/288 (28%)

Query: 262 RHLTYLDVSDNF---FQVHIPVG---------NMKSLSVLDLSKNRLIGKIPERLAMG-- 307
           + L   + SD F    +  IP               L  + LS N       E L     
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 308 -CFSLRYLVLSNNKM-------------KGHIFSKKINLTNLWRLQLDGNHFIGE----- 348
               L +L L NN +             +  +  K  N   L  +    N  +       
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKE 178

Query: 349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ 408
             ++  +  L   + +  N +  +     G   +  + +     L+              
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLAYCQELK-------------- 219

Query: 409 ILDISKKNIFGSLPSCFNPFSIKQGKPL-------NSMSGLDLSCNKLTGE------IPL 455
           +LD+             N F+      L        ++  L L+   L+           
Sbjct: 220 VLDLQ-----------DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 456 RIGNLTRIHTLNVSHNKLT-----GLILSTFSNLKQTESLDLSYNKLT 498
                  + TL + +N++       L       +     L+L+ N+ +
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 44/302 (14%), Positives = 87/302 (28%), Gaps = 77/302 (25%)

Query: 8   LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTS 67
           + +  +LE     +                     F G    +     +  LQ +     
Sbjct: 56  IASKKDLEIAEFSD--------------------IFTGRVKDEIPEALRLLLQALLKCPK 95

Query: 68  LKLLSLSNSRLN---GTILDQGLCEFVHLQELHVDHNNL-------------YGVPPWCL 111
           L  + LS++         L   L +   L+ L++ +N L                     
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 112 GNMTSLQVLNISSNQLTGNIS----SPPLKHLKSIQELKLSNNYF-----QIPISLGPLY 162
            N   L+ +    N+L  N S    +   +  + +  +K+  N       +  +  G L 
Sbjct: 156 KNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LA 213

Query: 163 NHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSH 222
               LK+ D ++N                      +H         L    +L+ + L+ 
Sbjct: 214 YCQELKVLDLQDNTF--------------------THLGSSALAIALKSWPNLRELGLND 253

Query: 223 INLRGEFPNWLSE-----NNTKLQTLVQVNNYLS-----GIFQMPKHARRHLTYLDVSDN 272
             L       + +      N  LQTL    N +       +  +       L +L+++ N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 273 FF 274
            F
Sbjct: 314 RF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 52/324 (16%), Positives = 102/324 (31%), Gaps = 72/324 (22%)

Query: 111 LGNMTSLQVLNISSNQLTGNISSP---PLKHLKSIQELKLSNNYFQIP--ISLGP-LYNH 164
           +    S++  ++  + +T          L    S++E+ LS N         L   + + 
Sbjct: 1   MAR-FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 165 SNLKIFDSENNQIY---------AQTESHSLTPKFQLNSIILSH----GSGV-TFPKFLY 210
            +L+I +  +              +    +L    +L+++ LS      +       FL 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 211 HQHDLKHVNLSHIN------------LRGEFPNWLSENNTKLQTLVQVNNYL-----SGI 253
               L+H+ L +              L+    N  ++N   L++++   N L        
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 254 FQMPKHARRHLTYLDVSDNFFQVHIPVG----------NMKSLSVLDLSKNRLIGK---- 299
            +  +   R L  + +  N  +   P G            + L VLDL  N         
Sbjct: 180 AKTFQSH-RLLHTVKMVQNGIR---PEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSS 234

Query: 300 -IPERLAMGCFSLRYLVLSNNKMKG----HIFS--KKINLTNLWRLQLDGNHFIGE---- 348
            +   L     +LR L L++  +       +     K+    L  L+L  N  I      
Sbjct: 235 ALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVR 292

Query: 349 -IPESL-SNCNLFGGLYLSDNHLS 370
            +   +         L L+ N  S
Sbjct: 293 TLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 40/231 (17%), Positives = 71/231 (30%), Gaps = 45/231 (19%)

Query: 282 NMKSLSVLDLSKNRLIGK-----IPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
              S+  + LS N  IG      + E +A     L     S+                  
Sbjct: 30  EDDSVKEIVLSGNT-IGTEAARWLSENIA-SKKDLEIAEFSDI--------------FTG 73

Query: 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP 396
           R++ +    +  + ++L  C     + LSDN         L +             L   
Sbjct: 74  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF------------LSKH 121

Query: 397 IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE---- 452
            P+E   L+   +   +   I  +L         K   PL S   +    N+L       
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS---IICGRNRLENGSMKE 178

Query: 453 IPLRIGNLTRIHTLNVSHNKLT-----GLILSTFSNLKQTESLDLSYNKLT 498
                 +   +HT+ +  N +       L+L   +  ++ + LDL  N  T
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 54  LDKNFLQVI----KSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPW 109
           L    + VI     ++     +  S++ +   +   G      L+ L V++N +  +   
Sbjct: 26  LRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL--DGFPLLRRLKTLLVNNNRICRIGEG 82

Query: 110 CLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLY 162
               +  L  L +++N L       PL  LKS+  L +  N    P++    Y
Sbjct: 83  LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN----PVTNKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 235 ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKN 294
            N  + + L      +  I  +          +D SDN  +       ++ L  L ++ N
Sbjct: 16  TNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKG-HIFSKKINLTNLWRLQLDGN 343
           R I +I E L      L  L+L+NN +          +L +L  L +  N
Sbjct: 75  R-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 64  SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123
           +    + L L   ++   +++           +    N +  +       +  L+ L ++
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVN 72

Query: 124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           +N++   I     + L  + EL L+NN       L PL +  +L       N +
Sbjct: 73  NNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
           LDL   K+   I      L +   ++ S N++    L  F  L++ ++L ++ N++    
Sbjct: 24  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRICRIG 80

Query: 502 PPQLVELNALAVFSVAHNKLS 522
                 L  L    + +N L 
Sbjct: 81  EGLDQALPDLTELILTNNSLV 101

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 55/228 (24%), Positives = 82/228 (35%), Gaps = 57/228 (25%)

Query: 278 IPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK---GHIFSKKINLTN 334
           IP         LDL  N+ +  +P +       LR L L++NK++     IF +   L N
Sbjct: 35  IPA----DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---LKN 86

Query: 335 LWRLQLDGNHFIGEIPESLSNCNLFGG------LYLSDNHLSGKIPRWLGNLSVSEDVIM 388
           L  L +  N  +  +P       +F        L L  N L           S+   V  
Sbjct: 87  LETLWVTDNK-LQALPI-----GVFDQLVNLAELRLDRNQLK----------SLPPRV-- 128

Query: 389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448
                       F  L  L  L +   N   SLP     F       L S+  L L  N+
Sbjct: 129 ------------FDSLTKLTYLSLGY-NELQSLPK--GVFD-----KLTSLKELRLYNNQ 168

Query: 449 LTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN 495
           L   +P      LT + TL + +N+L  +    F +L++ + L L  N
Sbjct: 169 LK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 24/150 (16%)

Query: 9   HNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-----K 63
             L NLE L + ++      LQ++    P  V  F     +    LD+N L+ +      
Sbjct: 82  KELKNLETLWVTDN-----KLQAL----PIGV--FDQLVNLAELRLDRNQLKSLPPRVFD 130

Query: 64  SMTSLKLLSLSNSRLNGTILDQGLCEF---VHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
           S+T L  LSL  + L    L +G+  F     L+EL + +N L  VP      +T L+ L
Sbjct: 131 SLTKLTYLSLGYNEL--QSLPKGV--FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNN 150
            + +NQL   +       L+ ++ L+L  N
Sbjct: 187 KLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 436 LNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY 494
           L  +  L L+ NKL   +P  I   L  + TL V+ NKL  L +  F  L     L L  
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 495 NKLTGKIPP----QLVELNALAVFSVAHNKLS 522
           N+L   +PP     L +L  L   S+ +N+L 
Sbjct: 119 NQLK-SLPPRVFDSLTKLTYL---SLGYNELQ 146

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L L  N LS    +    L+    + + +N L+      F +L  L+ L ++   +  +L
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QAL 100

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILST 480
           P     F       L +++ L L  N+L   +P R+  +LT++  L++ +N+L  L    
Sbjct: 101 PI--GVFD-----QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 481 FSNLKQTESLDLSYNKLTGKIPPQLVE-LNALAVFSVAHNKLS 522
           F  L   + L L  N+L  ++P    + L  L    + +N+L 
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLC-EFVHLQELHVDHNNLYGVP 107
           L  N L  +       +T L+LL L++++L    L  G+  E  +L+ L V  N L  +P
Sbjct: 44  LQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
                 + +L  L +  NQL  ++       L  +  L L  N  Q  +  G     ++L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159

Query: 168 KIFDSENNQI 177
           K     NNQ+
Sbjct: 160 KELRLYNNQL 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 39/172 (22%)

Query: 9   HNLTNLENLTLDNSFFHVSLLQSIA--VFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMT 66
           H LT L  L L++     + LQ++   +F                             + 
Sbjct: 58  HRLTKLRLLYLND-----NKLQTLPAGIFK---------------------------ELK 85

Query: 67  SLKLLSLSNSRLNGTILDQGLCEF-VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
           +L+ L +++++L    L  G+ +  V+L EL +D N L  +PP    ++T L  L++  N
Sbjct: 86  NLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
           +L  ++       L S++EL+L NN  +  +  G     + LK    +NNQ+
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQL 193

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
           L L  N+ T  +P  + N   +  +++S+N+++ L   +FSN+ Q  +L LSYN+L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 502 PP----QLVELNALAVFSVAHNKLS 522
           PP     L  L  L   S+  N +S
Sbjct: 94  PPRTFDGLKSLRLL---SLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 18/107 (16%)

Query: 54  LDKNFLQ----VIKSMTSLKLLSLSNSRLNGTILDQGLCEF---VHLQELHVDHNNLYGV 106
           LD N        + +   L L+ LSN+R+  + L      F     L  L + +N L  +
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQS--FSNMTQLLTLILSYNRLRCI 93

Query: 107 PPWCLGNMTSLQVLNISSNQLTGNISSPP---LKHLKSIQELKLSNN 150
           PP     + SL++L++  N +    S  P      L ++  L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDI----SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 259 HARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLV 315
              +HLT +D+S+N     +      NM  L  L LS NRL   IP R   G  SLR L 
Sbjct: 51  SNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLS 108

Query: 316 LSNNKMK----GHIFSKKINLTNLWRLQLDGN 343
           L  N +     G  F+   +L+ L  L +  N
Sbjct: 109 LHGNDISVVPEG-AFN---DLSALSHLAIGAN 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 35/201 (17%)

Query: 265 TYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321
             L +++N F V    G    +  L  ++ S N+ I  I E    G   +  ++L++N++
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRL 93

Query: 322 K---GHIFSKKINLTNLWRLQLDGNHFIGEIPE----SLSNCNLFGGLYLSDNHLSGKIP 374
           +     +F     L +L  L L  N  I  +       LS+  L   L L DN ++  + 
Sbjct: 94  ENVQHKMFKG---LESLKTLMLRSNR-ITCVGNDSFIGLSSVRL---LSLYDNQIT-TVA 145

Query: 375 R----WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILD-ISKKNIFGSLPSCFNPFS 429
                 L +LS    + +  N          C      + + + KK I    P C  P+ 
Sbjct: 146 PGAFDTLHSLS---TLNLLANPFN-------CNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195

Query: 430 IKQGKPLNSMSGLDLSCNKLT 450
           +K   P+  ++  D +C+   
Sbjct: 196 LK-EIPIQDVAIQDFTCDDAH 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 14/106 (13%)

Query: 54  LDKNFLQVI------KSMTSLKLLSLSNSRLNGTILDQGLCEF---VHLQELHVDHNNLY 104
           L+ N   V+      K +  L+ ++ SN+++  T +++G   F     + E+ +  N L 
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGA--FEGASGVNEILLTSNRLE 94

Query: 105 GVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNN 150
            V       + SL+ L + SN++T  + +     L S++ L L +N
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GN 459
           F +L  L+ ++ S   I       F           + ++ + L+ N+L   +  ++   
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEG--------ASGVNEILLTSNRLE-NVQHKMFKG 103

Query: 460 LTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP 503
           L  + TL +  N++T +   +F  L     L L  N++T  + P
Sbjct: 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 442 LDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500
           L L+ N+ T      I   L ++  +N S+NK+T +    F        + L+ N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN- 95

Query: 501 IPPQL-VELNALAVFSVAHNKLS 522
           +  ++   L +L    +  N+++
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 362 LYLSDNHLSGKIPR-WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS 420
           L L++N  +          L     +   NN +       F   + +  + ++  N   +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-NRLEN 95

Query: 421 LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILS 479
           +      F     K L S+  L L  N++T  +       L+ +  L++  N++T +   
Sbjct: 96  VQH--KMF-----KGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 480 TFSNLKQTESLDLSYN 495
            F  L    +L+L  N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 62/372 (16%), Positives = 123/372 (33%), Gaps = 46/372 (12%)

Query: 8   LHNLTNLENLTLDN----SFFHVSLLQSIAVFGPWMVQCFIGFRA-----MDGTALDKNF 58
                NL +L L      + F++          PW+ +     R           +    
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 59  LQVIKS--MTSLKLLSLSNSRLNGTILDQGLCEFV----HLQELHVDHNNLYGVPPWCLG 112
           L  +       L+ L L            GL   V     ++ L ++ ++        L 
Sbjct: 129 LDRLAKARADDLETLKLDKCSG---FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185

Query: 113 ----NMTSLQVLNISSNQLTGNISSPPLKHL----KSIQELKLSNNYFQIPISLGPLYNH 164
               + TSL+VLN    +    IS   L+ +    +S+  +K+ +      +       +
Sbjct: 186 ELAQHNTSLEVLNFYMTEFA-KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244

Query: 165 SNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN 224
                  S N  I    +  +L    +L  + LS+      P        ++ ++L +  
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304

Query: 225 LRGEFPNWLSENNTKLQTLVQVNNYLS--GIFQMPKHARRHLTYLDVSDNFFQVHIPVGN 282
           L  E    L +    L+ L +  N +   G+  + ++ ++ L  L +     +  +    
Sbjct: 305 LETEDHCTLIQKCPNLEVL-ETRNVIGDRGLEVLAQYCKQ-LKRLRIERGADEQGMEDEE 362

Query: 283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK----GHIFSKKINLTNLWRL 338
                   +S+  LI      LA GC  L Y+ +  + +       I +   NL +   +
Sbjct: 363 GL------VSQRGLI-----ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411

Query: 339 QLDGNHFIGEIP 350
            LD    I ++P
Sbjct: 412 LLDREERITDLP 423

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 47/320 (14%), Positives = 92/320 (28%), Gaps = 36/320 (11%)

Query: 219 NLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQ-MPKHARRHLTYLDVSDNFFQVH 277
           NL  + L+G  P     N         V  +++ I   + +    H   + VSD      
Sbjct: 74  NLRSLKLKG-KPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-R 131

Query: 278 IPVGNMKSLSVLDLSKNRLIG-KIPERLAMGCFSLRYLVLSNNKM--KGHIFSKKI--NL 332
           +       L  L L K           +   C  ++ L++  +    K   +  ++  + 
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 333 TNLWRLQLDGNHFIGEIPESL----SNC------NLFGGLYLSDNHLSGKIPRW--LGNL 380
           T+L  L      F    P+ L     NC       +     L                  
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251

Query: 381 SVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMS 440
           S++ED+ MP  ++    P + C+L    +       +F                    + 
Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ---------------IR 296

Query: 441 GLDLS-CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG 499
            LDL      T +    I     +  L   +      +       KQ + L +       
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

Query: 500 KIPPQLVELNALAVFSVAHN 519
            +  +   ++   + ++A  
Sbjct: 357 GMEDEEGLVSQRGLIALAQG 376

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 63/505 (12%), Positives = 132/505 (26%), Gaps = 75/505 (14%)

Query: 10  NLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLK 69
            +      T D        L+S+ + G      F       G  +     ++  ++  LK
Sbjct: 56  TMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115

Query: 70  LLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS-NQLT 128
            +          + D  L                             L+ L +   +  T
Sbjct: 116 SVHFRRM----IVSDLDLDRLAK-------------------ARADDLETLKLDKCSGFT 152

Query: 129 GNISSPPLKHLKSIQELKLSNNYF--QIPISLGPLYNHS----NLKIFDSENNQIYAQTE 182
            +     + H + I+ L +  + F  +    L  L  H+     L  + +E  +I  +  
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 183 SHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQT 242
                    L S+ +     +    F     +L+      +N     P    E    L  
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP----EKYMNLVF 268

Query: 243 LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPE 302
             ++                 L    +  N   +  P      +  LDL    L  +   
Sbjct: 269 PRKLC---------------RLGLSYMGPNEMPILFP--FAAQIRKLDLLYALLETEDHC 311

Query: 303 RLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL 362
            L   C +L  L   N      +         L RL+++       + +     +  G +
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371

Query: 363 YLSDN-------HLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK 415
            L+          +       + N S+              I      L   +++ + ++
Sbjct: 372 ALAQGCQELEYMAVYV---SDITNESLES------------IGTYLKNLCDFRLVLLDRE 416

Query: 416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG-NLTRIHTLNVSHNKLT 474
                LP      S+  G          L    LT      IG     +  + + +   +
Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476

Query: 475 GL-ILSTFSNLKQTESLDLSYNKLT 498
              ++         + L++     +
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFS 501

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 54  LDKNFLQVI-----KSMTSLKLLSLSNSRLNGTILDQGLCE-FVHLQELHVDHNNLYGVP 107
           L++N ++VI          L+ + LSN+++  + L     +    L  L +  N +  +P
Sbjct: 39  LEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 108 PWCLGNMTSLQVLNISSNQLTGNISSPP--LKHLKSIQELKLSNNYFQ 153
                 + SLQ+L +++N++           + L ++  L L +N  Q
Sbjct: 97  KSLFEGLFSLQLLLLNANKIN---CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLI 297
             +    N +  I        + L  +D+S+N     +       ++SL+ L L  N++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 298 GKIPERLAMGCFSLRYLVLSNNKMKG---HIFSKKINLTNLWRLQLDGNHFIGEIPESLS 354
            ++P+ L  G FSL+ L+L+ NK+       F    +L NL  L L  N        + S
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 355 NCNLFGGLYLSDN 367
                  ++L+ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%)

Query: 390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNK 448
            N ++   P  F     L+ +D+S  N    L    F          L S++ L L  NK
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQG--------LRSLNSLVLYGNK 91

Query: 449 LTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT 498
           +T E+P  +   L  +  L ++ NK+  L +  F +L     L L  NKL 
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 28/197 (14%)

Query: 265 TYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM 321
           T + +  N  +  IP G     K L  +DLS N++  ++      G  SL  LVL  NK+
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI 92

Query: 322 K---GHIFSKKINLTNLWRLQLDGNHFIGEIPE----SLSNCNLFGGLYLSDNHLSGKIP 374
                 +F     L +L  L L+ N  I  +       L N NL   L L DN L     
Sbjct: 93  TELPKSLFEG---LFSLQLLLLNANK-INCLRVDAFQDLHNLNL---LSLYDNKLQTIAK 145

Query: 375 RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILD-ISKKNIFGSLPSCFNPFSIKQG 433
                L   + + +  N          C  +   + D +    I  S   C +P  +   
Sbjct: 146 GTFSPLRAIQTMHLAQNPFI-------CDCHLKWLADYLHTNPIETSGARCTSPRRL-AN 197

Query: 434 KPLNSMSGLDLSCNKLT 450
           K +  +      C+   
Sbjct: 198 KRIGQIKSKKFRCSAAA 214

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 442 LDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK 500
           + L  N +   IP        ++  +++S+N+++ L    F  L+   SL L  NK+T +
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 501 IPPQLVE-LNALAVFSVAHNKLS 522
           +P  L E L +L +  +  NK++
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 31/140 (22%)

Query: 238 TKLQTLVQVNNYLS----GIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLD 290
            KL+ +   NN +S      F       R L  L +  N     +P      + SL +L 
Sbjct: 56  KKLRRIDLSNNQISELAPDAF----QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 291 LSKNRLIGKIPERLAMGCF----SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI 346
           L+ N++       L +  F    +L  L L +NK++         L  +  + L  N FI
Sbjct: 111 LNANKI-----NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

Query: 347 GEIPESLSNCNLFGGLYLSD 366
                   +C+L    +L+D
Sbjct: 166 -------CDCHL---KWLAD 175

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 94  QELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ 153
            E+ ++ N +  +PP        L+ +++S+NQ++  ++    + L+S+  L L  N   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 154 IPISLGP--LYNHSNLKIFDSENNQI 177
               L         +L++     N+I
Sbjct: 94  ---ELPKSLFEGLFSLQLLLLNANKI 116

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 52/362 (14%), Positives = 102/362 (28%), Gaps = 62/362 (17%)

Query: 75  NSRLNGTILDQGLCEFV----HLQELHVDHNNLY--GVPPWC---LGNMTSLQVLNISSN 125
           N +L        + EF      +  L +  NNLY                S+  LN+S N
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 126 QLT----GNISSPPLKHLKSIQELKLSNNYFQ----IPISLGPLYNHSNLKIFDSENNQI 177
            L       +         ++  L LS N+        +          + + D   N  
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 178 YAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE-- 235
            +++ S                        F      +  +NL   +L  +  + L +  
Sbjct: 122 SSKSSSE------------FKQA-------FSNLPASITSLNLRGNDLGIKSSDELIQIL 162

Query: 236 --NNTKLQTLVQVNNYLS-----GIFQMPKHARRHLTYLDVSDNFFQ-------VHIPVG 281
                 + +L    N L+      + +        +T LD+S N           +I   
Sbjct: 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 282 NMKSLSVLDLSKNRLIGKIPERLAMG---CFSLRYLVLSNNKMKG-------HIFSKKIN 331
               +  L+L  N L G   E L +       L+ + L  + +K         + +   N
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 332 LTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN 391
           +  +  +  +G          +SN             L  +   +      + + +   +
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342

Query: 392 HL 393
            L
Sbjct: 343 EL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 48/304 (15%), Positives = 102/304 (33%), Gaps = 63/304 (20%)

Query: 233 LSENNTKLQTLVQVNNYLS-----GIFQMPKHARRHLTYLDVSDNFFQV-------HIPV 280
            +     + +L    N L       + Q   +    +T L++S N            I  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 281 GNMKSLSVLDLSKNRL----IGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI------ 330
               +++ L+LS N L      ++ + LA   F++  L L  N       S +       
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSN 135

Query: 331 NLTNLWRLQLDGNHFIGE-----IPESLSNCNLF-GGLYLSDNHLSGKIPRWLGNLSVSE 384
              ++  L L GN  +G      + + L+        L L  N+L+ K         +++
Sbjct: 136 LPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASK-----NCAELAK 189

Query: 385 DVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDL 444
            +      +                LD+S  N+ G     +   +       N +  L+L
Sbjct: 190 FLASIPASVT--------------SLDLSA-NLLG--LKSYAELAYIFSSIPNHVVSLNL 232

Query: 445 SCNKLTGEIPLRIGNL----TRIHTLNVSHNKLTGL-------ILSTFSNLKQTESLDLS 493
             N L G     +  L      + T+ + ++ +  +       + + F N+++   +D +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 494 YNKL 497
             ++
Sbjct: 293 GKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 52/327 (15%), Positives = 96/327 (29%), Gaps = 69/327 (21%)

Query: 215 LKHVNLSHINLRGE----FPNWLSENNTKLQTLVQVNNYLS-----GIFQMPKHARRHLT 265
           +  +NLS  +L  +        L+     + +L    N+LS      + +        +T
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112

Query: 266 YLDVSDNFFQ----VHIP---VGNMKSLSVLDLSKNRL----IGKIPERLAMGCFSLRYL 314
            LD+  N F                 S++ L+L  N L      ++ + LA    ++  L
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 315 VLSNNKMK----GHIFS--KKINLTNLWRLQLDGNHF----IGEIPESLSNCN-LFGGLY 363
            L  N +       +      I   ++  L L  N        E+    S+       L 
Sbjct: 173 NLRGNNLASKNCAELAKFLASIP-ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK---KNIFGS 420
           L  N L G     L  L           HL+         L++  + ++SK   K +  +
Sbjct: 232 LCLNCLHGPSLENLKLL------KDSLKHLQ------TVYLDYDIVKNMSKEQCKALGAA 279

Query: 421 LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST 480
            P+               +  +D +  ++     + I NL R  +       L    L  
Sbjct: 280 FPNI------------QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIF 327

Query: 481 FSNLKQTES----------LDLSYNKL 497
               +                 +   L
Sbjct: 328 AQKHQTNIEDLNIPDELRESIQTCKPL 354

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 20/145 (13%)

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG---NMKSLSVLDLSKNRLI 297
           + L   +  L+ +          LT+L++  N  Q  +  G   ++  L  L L+ N+L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQL- 95

Query: 298 GKIPERLAMGCFSLRYLVLSNNKMKG---HIFSKKINLTNLWRLQLDGNHFIGEIPE--- 351
             +P  +      L  L L  N++K     +F +   LT L  L+L+ N  +  IP    
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR---LTKLKELRLNTNQ-LQSIPAGAF 151

Query: 352 -SLSNCNLFGGLYLSDNHLSGKIPR 375
             L+N      L LS N L   +P 
Sbjct: 152 DKLTNLQT---LSLSTNQLQS-VPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
           LDL    L          LT++  LN+ +N+L  L    F +L +  +L L+ N+L   +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 502 PP----QLVELNALAVFSVAHNKL 521
           P      L +L+ L    +  N+L
Sbjct: 99  PLGVFDHLTQLDKL---YLGGNQL 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 24/150 (16%)

Query: 9   HNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQ-----VIK 63
             LT L  L LD +      LQ++       V  F     +    L  N L      V  
Sbjct: 56  RGLTKLTWLNLDYN-----QLQTL----SAGV--FDDLTELGTLGLANNQLASLPLGVFD 104

Query: 64  SMTSLKLLSLSNSRLNGTILDQGLCEF---VHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
            +T L  L L  ++L    L  G+  F     L+EL ++ N L  +P      +T+LQ L
Sbjct: 105 HLTQLDKLYLGGNQL--KSLPSGV--FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNN 150
           ++S+NQL  ++       L  +Q + L  N
Sbjct: 161 SLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 11/132 (8%)

Query: 50  DGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGL-CEFVHLQELHVDHNNLYGVPP 108
             T L        + +T L  L+L  ++L    L  G+  +   L  L + +N L  +P 
Sbjct: 43  QSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 109 WCLGNMTSLQVLNISSNQLTGNISSPP--LKHLKSIQELKLSNNYFQ-IPISLGPLYNHS 165
               ++T L  L +  NQL    S P      L  ++EL+L+ N  Q IP   G     +
Sbjct: 101 GVFDHLTQLDKLYLGGNQLK---SLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKLT 155

Query: 166 NLKIFDSENNQI 177
           NL+      NQ+
Sbjct: 156 NLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 12/139 (8%)

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L L    L+         L+    + +  N L+      F  L  L  L ++   +  SL
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 422 PS-CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILS 479
           P   F+         L  +  L L  N+L   +P  +   LT++  L ++ N+L  +   
Sbjct: 99  PLGVFDH--------LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG 149

Query: 480 TFSNLKQTESLDLSYNKLT 498
            F  L   ++L LS N+L 
Sbjct: 150 AFDKLTNLQTLSLSTNQLQ 168

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 82/524 (15%), Positives = 155/524 (29%), Gaps = 99/524 (18%)

Query: 8   LHNLTNLENLTLDN----SFFHVSLLQSIAVFGPWMVQCFIGFRA-----MDGTALDKNF 58
           +     + ++ L      + F++          PW+      +       +    +  + 
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 59  LQVI-KSMTSLKLLSLSNSRLNGTILDQGLCEFV----HLQELHVDHNNLYGVPPWCLG- 112
           L++I KS  + K+L LS+          GL        +L+EL +  +++  V    L  
Sbjct: 122 LELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 113 ---NMTSLQVLNISSNQLTGNISSPPLKHL----KSIQELKLSNNYFQIPISLGPLYNHS 165
                TSL  LNIS   L   +S   L+ L     +++ LKL+     +      L    
Sbjct: 179 FPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKLATLLQRAP 235

Query: 166 NLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT------FPKFLYHQHDLKHVN 219
            L+   +       + + +S           L   SG         P        L  +N
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 220 LSHINLRGEFPNWLSENNTKLQTLVQVNNY-LSGIFQMPKHARRHLTYLDVSDNFFQVHI 278
           LS+  ++      L     KLQ L  ++    +G+  +    +  L  L V  +   V  
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK-DLRELRVFPSEPFVME 354

Query: 279 PVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSK-KINLTNLWR 337
           P   +    +               ++MGC  L  ++    +M          N  N+ R
Sbjct: 355 PNVALTEQGL-------------VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401

Query: 338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI 397
                          L         YL+             ++     V           
Sbjct: 402 F-------------RLCIIEPKAPDYLTLE---------PLDIGFGAIV----------- 428

Query: 398 PMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ-GKPLNSMSGLDLSCNKLTGEIPLR 456
             E C+   L+ L +S                 +  G     M  L ++    +      
Sbjct: 429 --EHCK--DLRRLSLS---------GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475

Query: 457 IG-NLTRIHTLNVSHNKLTGL-ILSTFSNLKQTESLDLSYNKLT 498
           +      +  L +         +L+  S L+   SL +S   ++
Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 19/118 (16%)

Query: 52  TALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF-------VHLQELHVDHNNLY 104
           T +++   ++  +   L+ ++L+N      I    L           ++++  +      
Sbjct: 22  TDVEETLKRIQNNDPDLEEVNLNNIM---NIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78

Query: 105 GVPPWCLGNM----TSLQVLNISSNQLTGN----ISSPPLKHLKSIQELKLSNNYFQI 154
               + L  M     +L+ LN+ SN ++G+    +    L+   S+ EL++ N    +
Sbjct: 79  DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 61  VIKSMTSLKLLSLSNSRLNGTILDQGLCE-FVHLQELHVDHNNLYGVPPWCLGNMTSLQV 119
           +   +  L  L L  ++L  T ++    E   H+QEL +  N +  +       +  L+ 
Sbjct: 49  LFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106

Query: 120 LNISSNQLTGNISSPP--LKHLKSIQELKLSNN 150
           LN+  NQ++      P   +HL S+  L L++N
Sbjct: 107 LNLYDNQIS---CVMPGSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
           LDL  N L          LT +  L +  NKL  L    F+ L     L+LS N+L   +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 502 PP----QLVELNALAVFSVAHNKL 521
           P     +L +L  L   ++  N+L
Sbjct: 92  PNGVFDKLTQLKEL---ALNTNQL 112

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
           L L  N++T   P    +L  +  L +  N+L  L +  F +L Q   LDL  N+LT  +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 502 PP----QLVELNALAVFSVAHNKL 521
           P     +LV L  L    +  NKL
Sbjct: 104 PSAVFDRLVHLKEL---FMCCNKL 124

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 54  LDKNFLQ---VIKSMTSLKLLSLSNSRLNGTILDQGLCE-FVHLQELHVDHNNLYGVPPW 109
           L  N L     +K +T+L  L L+ ++L    L  G+ +   +L+EL +  N L  +P  
Sbjct: 70  LGGNKLHDISALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDG 127

Query: 110 CLGNMTSLQVLNISSNQLTGNISSPP--LKHLKSIQELKLSNNYFQ 153
               +T+L  LN++ NQL    S P      L ++ EL LS N  Q
Sbjct: 128 VFDKLTNLTYLNLAHNQLQ---SLPKGVFDKLTNLTELDLSYNQLQ 170

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 13/86 (15%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 429 SIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN---LTRIHTLNVSHNKLTG----LILSTF 481
            +       ++  L +   +    +         L ++ T+++S   LT     L+L   
Sbjct: 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303

Query: 482 SNLKQTESLDLSYNKLTGKIPPQLVE 507
             +K  + +++ YN L+ ++  +L +
Sbjct: 304 DKIKHLKFINMKYNYLSDEMKKELQK 329

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 19/118 (16%)

Query: 52  TALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV-------HLQELHVDHNNLY 104
           T ++    ++ +  T LK ++++N +    +  + +   +       H+++  + +  + 
Sbjct: 27  TDVESCINRLREDDTDLKEVNINNMK---RVSKERIRSLIEAACNSKHIEKFSLANTAIS 83

Query: 105 GVPPWCLGNM----TSLQVLNISSNQLTGN----ISSPPLKHLKSIQELKLSNNYFQI 154
                 L  +     SL+VLN+ SN LT      +        +SI E K  N    +
Sbjct: 84  DSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR-STLVTQSIVEFKADNQRQSV 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	629
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.08
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.75
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.69

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.5e-63  Score=553.37  Aligned_cols=540  Identities=29%  Similarity=0.380  Sum_probs=387.1

Q ss_pred             hhccCCCCCcEEEcCCCCceeecch--hhhhcCccchhcccceeeccCcccCccchhhh-cCCCCCCEEEccCCcCCCcc
Q 040607            6 IELHNLTNLENLTLDNSFFHVSLLQ--SIAVFGPWMVQCFIGFRAMDGTALDKNFLQVI-KSMTSLKLLSLSNSRLNGTI   82 (629)
Q Consensus         6 ~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~i   82 (629)
                      ..++++++|++|||++|.+.+.+|.  .++.+      ..|++|++++|.+.+..|..+ .++++|++|++++|.+++..
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l------~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  167 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC------SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN  167 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC------TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHhCC------CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC
Confidence            4677788888888888888777776  66655      355566666665555544433 44455555555555444222


Q ss_pred             Ccc------------------------ccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCC
Q 040607           83 LDQ------------------------GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH  138 (629)
Q Consensus        83 ~~~------------------------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~  138 (629)
                      +..                        .+..+++|++|++++|.+++..|. +.++++|++|++++|.+++.+|. .+++
T Consensus       168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~  245 (768)
T 3rgz_A          168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AIST  245 (768)
T ss_dssp             HHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTT
T ss_pred             ChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhc
Confidence            210                        124566666666666666665554 66677777777777776655544 6666


Q ss_pred             CCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC-CCCcChhhcCCCCCCE
Q 040607          139 LKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS-GVTFPKFLYHQHDLKH  217 (629)
Q Consensus       139 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~  217 (629)
                      +++|++|++++|.+++..+..   .+++|++|++++|.+.+..+......+.+|++|+++++. .+.+|..+..+++|++
T Consensus       246 l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  322 (768)
T 3rgz_A          246 CTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES  322 (768)
T ss_dssp             CSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred             CCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence            777777777776665444321   566666666666666544443333334667777777443 3356666777777777


Q ss_pred             EEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccC---------------------------CCccEEEcc
Q 040607          218 VNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR---------------------------RHLTYLDVS  270 (629)
Q Consensus       218 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------------------------~~L~~L~L~  270 (629)
                      |++++|++.+.+|...+..+++|++|++++|.+++..+..+..+                           ++|++|+++
T Consensus       323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~  402 (768)
T 3rgz_A          323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ  402 (768)
T ss_dssp             EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred             EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence            77777777666666544666667777777666665444444443                           445555555


Q ss_pred             CCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCccc
Q 040607          271 DNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE  348 (629)
Q Consensus       271 ~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  348 (629)
                      +|.+.+..+  +..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+++.
T Consensus       403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  481 (768)
T 3rgz_A          403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE  481 (768)
T ss_dssp             SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence            555544433  556677777777777777666665543 77788888888887777777777888888888888888878


Q ss_pred             CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCC
Q 040607          349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPF  428 (629)
Q Consensus       349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  428 (629)
                      .|..+..+++|++|++++|++.+.+|.+++.+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+...
T Consensus       482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~  561 (768)
T 3rgz_A          482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ  561 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred             CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888887777654321


Q ss_pred             cc--------------------------------------------------------------ccCCCccCCCeeeccc
Q 040607          429 SI--------------------------------------------------------------KQGKPLNSMSGLDLSC  446 (629)
Q Consensus       429 ~~--------------------------------------------------------------~~~~~~~~L~~L~L~~  446 (629)
                      ..                                                              .....+++|+.||+++
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~  641 (768)
T 3rgz_A          562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY  641 (768)
T ss_dssp             TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred             cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence            00                                                              1123367899999999


Q ss_pred             ccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          447 NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       447 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |++++.+|..++.+++|+.|+|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|++||+++|+++|.+|
T Consensus       642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCCCCCCCCCC----CCCCCCCccc
Q 040607          527 DWVAQFATFNGSSYDGNPFLSS----SCNGEDDSLI  558 (629)
Q Consensus       527 ~~~~~~~~l~~l~~~~np~~c~----~C~~~~~~~~  558 (629)
                      .. .++.++...++.|||..|+    .|.......+
T Consensus       722 ~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~  756 (768)
T 3rgz_A          722 EM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGY  756 (768)
T ss_dssp             SS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC----
T ss_pred             Cc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCC
Confidence            84 6788889999999999997    5764444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.5e-60  Score=532.41  Aligned_cols=530  Identities=26%  Similarity=0.348  Sum_probs=351.6

Q ss_pred             CCccchhccCCCCCcEEEcCCCCceee---cchhhhhcC-----------------ccchhcccceeeccCcccCccchh
Q 040607            1 CCSFLIELHNLTNLENLTLDNSFFHVS---LLQSIAVFG-----------------PWMVQCFIGFRAMDGTALDKNFLQ   60 (629)
Q Consensus         1 ~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~-----------------~~~~~~~l~~L~l~~~~~~~~~~~   60 (629)
                      ||+|...-++-.+++.|||+++.+.+.   ++.++..+.                 ...-...|++|+|++|.+++.+|.
T Consensus        39 ~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~  118 (768)
T 3rgz_A           39 PCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT  118 (768)
T ss_dssp             GGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGG
T ss_pred             CcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCC
Confidence            677775544445677777777776665   444333320                 011124788999999999998888


Q ss_pred             --hhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcc---cCCCCCCCeeecccccCCcccCccc
Q 040607           61 --VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWC---LGNMTSLQVLNISSNQLTGNISSPP  135 (629)
Q Consensus        61 --~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~i~~~~  135 (629)
                        .++++++|++|+|++|.+++.++...+.++++|++|++++|++++..+..   +.++++|++|++++|.+++.+   .
T Consensus       119 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~  195 (768)
T 3rgz_A          119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---D  195 (768)
T ss_dssp             GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC---B
T ss_pred             hHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC---C
Confidence              89999999999999999987777644588999999999999998877655   666666666666666665322   2


Q ss_pred             cCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcC----------------------Cccccc
Q 040607          136 LKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT----------------------PKFQLN  193 (629)
Q Consensus       136 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----------------------~~~~L~  193 (629)
                      +..+++|++|++++|.+++..+.  +..+++|++|++++|.+.+..+ ..+.                      .+.+|+
T Consensus       196 ~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~  272 (768)
T 3rgz_A          196 VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQ  272 (768)
T ss_dssp             CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCCCCTTCC
T ss_pred             cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCccccCCCC
Confidence            35555566666655555533331  5555555555555555432211 1123                      334555


Q ss_pred             EEEeccCCC-CCcChhhcCC-CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCC-CCcccCCCccEEEcc
Q 040607          194 SIILSHGSG-VTFPKFLYHQ-HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQ-MPKHARRHLTYLDVS  270 (629)
Q Consensus       194 ~L~l~~~~~-~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~  270 (629)
                      +|+++++.. +.+|..+... ++|++|++++|++.+.+|..+ ..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            555553322 2455555443 666666666666665566554 566666666666666663333 235666667777776


Q ss_pred             CCCCccccc--CCC---------------------------CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccc
Q 040607          271 DNFFQVHIP--VGN---------------------------MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKM  321 (629)
Q Consensus       271 ~n~~~~~~~--~~~---------------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  321 (629)
                      +|.+.+..+  +..                           +++|++|++++|.+++.+|..+.. +++|++|++++|.+
T Consensus       352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYL  430 (768)
T ss_dssp             SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEE
T ss_pred             CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcc
Confidence            666543322  111                           334444445444444444444332 55666666666666


Q ss_pred             ccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccc
Q 040607          322 KGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEF  401 (629)
Q Consensus       322 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  401 (629)
                      ++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|.++..+++|+.|++++|.+.+.+|..+
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            65566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccc------------------------
Q 040607          402 CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI------------------------  457 (629)
Q Consensus       402 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~------------------------  457 (629)
                      ..+++|++|++++|++.+.+|..+..        +++|+.|++++|.+++.+|..+                        
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGD--------CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG  582 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGG--------CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcC--------CCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence            66666777777766666666666655        7788888888887776555432                        


Q ss_pred             ----------------------------------------------ccccccceEeccCccccccccccccCCCCCCEEE
Q 040607          458 ----------------------------------------------GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLD  491 (629)
Q Consensus       458 ----------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  491 (629)
                                                                    ..+++|+.|+|++|++++.+|..|+++++|+.|+
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  662 (768)
T 3rgz_A          583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN  662 (768)
T ss_dssp             CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence                                                          2346788888888888888888888899999999


Q ss_pred             CcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607          492 LSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL  546 (629)
Q Consensus       492 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~  546 (629)
                      |++|++++.+|+.+..+++|+.||+++|++++.+|..+..+..++.+++++|+..
T Consensus       663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            9999998889988989999999999999999989888888888888999888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-57  Score=502.80  Aligned_cols=520  Identities=21%  Similarity=0.222  Sum_probs=394.9

Q ss_pred             CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607           12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV   91 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~   91 (629)
                      +++++|||++|.+.+..+..++.+      ..|++|++++|.+++..|.+++++++|++|+|++|.++ .+|+.+|.+++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~   97 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRY------SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT   97 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGG------TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCC------CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCC
Confidence            689999999999988777777776      57899999999999999999999999999999999998 78876799999


Q ss_pred             CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCccc--CCCCCCcE
Q 040607           92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPL--YNHSNLKI  169 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~  169 (629)
                      +|++|++++|+++++++..|.++++|++|++++|.++ .++...+.++++|++|++++|.+++ .+...+  ..+++|+.
T Consensus        98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A           98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKK  175 (680)
T ss_dssp             TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESE
T ss_pred             CCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccE
Confidence            9999999999999998889999999999999999998 4444488999999999999998874 332333  35678889


Q ss_pred             EECCCCcceeecCCCCcCC---------------------------cccccEEEeccCCC-CCcChhhcCCC--CCCEEE
Q 040607          170 FDSENNQIYAQTESHSLTP---------------------------KFQLNSIILSHGSG-VTFPKFLYHQH--DLKHVN  219 (629)
Q Consensus       170 L~l~~n~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~-~~~~~~l~~~~--~L~~L~  219 (629)
                      |++++|.+....+.. +..                           ..+|+.|+++++.. ...|..+..++  +|++|+
T Consensus       176 L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          176 LELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             EECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             EECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            999888776543321 111                           13455555553332 22344444443  366666


Q ss_pred             ccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEcc-----------------------------
Q 040607          220 LSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVS-----------------------------  270 (629)
Q Consensus       220 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~-----------------------------  270 (629)
                      +++|++.+..|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|+++                             
T Consensus       255 Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          255 LSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             CTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             CCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            66666664444443 556666666666666665555555555555555554                             


Q ss_pred             ----CCCCccccc--CCCCCCccEEeccCCCCCc-ccchhhhhC--CCCCcEEEccCcccccccCcccCCCCCCcEEEcc
Q 040607          271 ----DNFFQVHIP--VGNMKSLSVLDLSKNRLIG-KIPERLAMG--CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLD  341 (629)
Q Consensus       271 ----~n~~~~~~~--~~~~~~L~~L~L~~n~l~~-~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  341 (629)
                          +|.+.+..+  +..+++|++|++++|.+.. .++...+..  .++|++|++++|++++..+..|..+++|+.|+++
T Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence                444443332  4444555555555544221 122222211  1356666667777777777788888888888888


Q ss_pred             CCcCcccCc-hhhhccccCCceeccccccCCCccccccCCCCCccccCCCCccc--CCCCccccCCCcccEEEcccCcCC
Q 040607          342 GNHFIGEIP-ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE--GPIPMEFCQLNFLQILDISKKNIF  418 (629)
Q Consensus       342 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~  418 (629)
                      +|.+.+.+| ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.  +..|..+..+++|++|++++|.+.
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~  493 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA  493 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence            888876554 67888888888888888887777778888888889998888876  467788999999999999999998


Q ss_pred             CCCCCCcCCCccccCCCccCCCeeecccccCCCCCc--------cccccccccceEeccCccccccccccccCCCCCCEE
Q 040607          419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP--------LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESL  490 (629)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  490 (629)
                      +..+..+..        +++|+.|++++|.+++..+        ..+.++++|++|+|++|+++.+++..|.++++|++|
T Consensus       494 ~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          494 NINDDMLEG--------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII  565 (680)
T ss_dssp             CCCTTTTTT--------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCChhhhcc--------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence            888877766        8999999999999874322        237889999999999999998888889999999999


Q ss_pred             ECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccc-cccccCCCCCCCCCCCCCCCC
Q 040607          491 DLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVA-QFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       491 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~l~~~~np~~c~~C~  551 (629)
                      ++++|++++..+..|..+++|+.|++++|++++..+..+. .+++++.+++++|||.| +|+
T Consensus       566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c-~c~  626 (680)
T 1ziw_A          566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC-TCE  626 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB-CCC
T ss_pred             ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc-CCc
Confidence            9999999987777889999999999999999998887776 78999999999999999 886

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4e-56  Score=487.71  Aligned_cols=515  Identities=18%  Similarity=0.160  Sum_probs=379.0

Q ss_pred             CCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCC
Q 040607           13 NLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVH   92 (629)
Q Consensus        13 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~   92 (629)
                      ++++|||++|.+++..|..++.+      ..|++|++++|.+.+..|.+|+++++|++|+|++|.++ .+++.+|.++++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~  106 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRL------INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKA  106 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTC------TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTT
T ss_pred             cCcEEEccCCccCcCChhHhccC------ccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhccccc
Confidence            45666666666655555555554      35556666666666555566666666666666666665 333335666666


Q ss_pred             CcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCc--EE
Q 040607           93 LQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLK--IF  170 (629)
Q Consensus        93 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L  170 (629)
                      |++|++++|.++++.+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++ ..+...+..+++|+  .|
T Consensus       107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L  184 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSL  184 (606)
T ss_dssp             CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEE
T ss_pred             ccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEE
Confidence            666666666665555555566666666666666655 332223444666666666666555 23333455555555  56


Q ss_pred             ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCC----CCChhHHhcCC--CCcEEe
Q 040607          171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRG----EFPNWLSENNT--KLQTLV  244 (629)
Q Consensus       171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~--~L~~L~  244 (629)
                      ++++|.+....+..  .....|+.|+++.+.  .++..+..+.+++...+....+.+    .++...+..+.  +++.++
T Consensus       185 ~l~~n~l~~~~~~~--~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          185 NLNGNDIAGIEPGA--FDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             ECTTCCCCEECTTT--TTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             ecCCCccCccChhH--hhhccccccccCCch--hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence            66666555443322  122355555555332  233333333333333332221111    12222233333  789999


Q ss_pred             ccCccccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccc
Q 040607          245 QVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG  323 (629)
Q Consensus       245 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  323 (629)
                      +++|.++.+.+..|..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCC
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCccc
Confidence            99999999999999999999999999999986544 7889999999999999984444 444459999999999999885


Q ss_pred             ccC-cccCCCCCCcEEEccCCcCcccC--chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCc-
Q 040607          324 HIF-SKKINLTNLWRLQLDGNHFIGEI--PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPM-  399 (629)
Q Consensus       324 ~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-  399 (629)
                      ..+ ..+..+++|+.|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. 
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            554 45889999999999999998765  77899999999999999999888888999999999999999999877654 


Q ss_pred             cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC---CccccccccccceEeccCcccccc
Q 040607          400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE---IPLRIGNLTRIHTLNVSHNKLTGL  476 (629)
Q Consensus       400 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~  476 (629)
                      .+..+++|++|++++|.+.+..|..+..        +++|+.|++++|.+++.   .+..+..+++|++|++++|.+++.
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDG--------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTT--------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhC--------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            4899999999999999999888888876        89999999999999752   335788999999999999999999


Q ss_pred             ccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          477 ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       477 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      +|..|.++++|++|++++|++++..|+.+..+++| .|++++|++++..|..+..+++++.+++++|||.| +|+
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-~c~  564 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC-TCS  564 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC-SGG
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc-cCC
Confidence            99999999999999999999999999999999999 99999999999988888999999999999999999 775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-56  Score=502.24  Aligned_cols=486  Identities=19%  Similarity=0.171  Sum_probs=326.1

Q ss_pred             cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607           42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN  121 (629)
Q Consensus        42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  121 (629)
                      ..+++|||++|.+++..|..|.++++|++|+|++|...+.+++++|.++++|++|+|++|++.++.|.+|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            45566666666666655666666666666666666444455444566666666666666666666666666666666666


Q ss_pred             cccccCCcccCc-cccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCc--ccccEEEec
Q 040607          122 ISSNQLTGNISS-PPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPK--FQLNSIILS  198 (629)
Q Consensus       122 L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~  198 (629)
                      +++|.+++.++. ..++++++|++|++++|.+++..+...|.++++|++|++++|.+...... .+..+  .+|+.|+++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEEC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECC
Confidence            666666543332 12566666666666666665333323456666666666666655443221 12222  456666666


Q ss_pred             cC-CCCCcChhhcCCCC------CCEEEccCCCCCCCCChhHHhc-----------------------------------
Q 040607          199 HG-SGVTFPKFLYHQHD------LKHVNLSHINLRGEFPNWLSEN-----------------------------------  236 (629)
Q Consensus       199 ~~-~~~~~~~~l~~~~~------L~~L~L~~n~l~~~~~~~~~~~-----------------------------------  236 (629)
                      .+ .....|..+..+.+      |+.|++++|.+.+..+..+...                                   
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            22 22333333333332      6666666665554444333221                                   


Q ss_pred             --CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCc
Q 040607          237 --NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLR  312 (629)
Q Consensus       237 --~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  312 (629)
                        .++++.|++++|.+....+..|..+++|+.|++++|.+....+  +..+++|++|++++|.+. .++...+..+++|+
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVA  341 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCC
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCC
Confidence              2567777777777777777777777777777777777766544  667777777777777776 33333344577777


Q ss_pred             EEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCc
Q 040607          313 YLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH  392 (629)
Q Consensus       313 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  392 (629)
                      +|++++|.+....+..|..+++|+.|++++|.+++.     ..+++|+.|++++|++. .+|..   ...++.+++++|.
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~  412 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENR  412 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCC
T ss_pred             EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCc
Confidence            777777777766666677777777777777776632     22667777777777776 33332   3567788888888


Q ss_pred             ccCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC-----CCCccccccccccceE
Q 040607          393 LEGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT-----GEIPLRIGNLTRIHTL  466 (629)
Q Consensus       393 l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L  466 (629)
                      +.+... ..+..+++|++|++++|++.+..+....       ..+++|+.|++++|.++     +..+..|.++++|++|
T Consensus       413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L  485 (844)
T 3j0a_A          413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL  485 (844)
T ss_dssp             CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred             cccCchhhhhhcCCccceeeCCCCccccccccccc-------ccCCccccccCCCCccccccccccchhhhcCcccccEE
Confidence            875422 2356889999999999999766544221       12789999999999986     3445678899999999


Q ss_pred             eccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607          467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL  546 (629)
Q Consensus       467 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~  546 (629)
                      +|++|.++++++..|.++++|++|++++|++++..|..+.  ++|+.|++++|++++..|..+   .+++.+++++|||.
T Consensus       486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI  560 (844)
T ss_dssp             CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred             ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence            9999999999999999999999999999999987777666  899999999999999988754   47888999999999


Q ss_pred             CCCCC
Q 040607          547 SSSCN  551 (629)
Q Consensus       547 c~~C~  551 (629)
                      | +|+
T Consensus       561 C-~c~  564 (844)
T 3j0a_A          561 C-ECE  564 (844)
T ss_dssp             C-SSS
T ss_pred             c-ccc
Confidence            9 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-54  Score=476.21  Aligned_cols=488  Identities=19%  Similarity=0.169  Sum_probs=349.9

Q ss_pred             cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607           42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN  121 (629)
Q Consensus        42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  121 (629)
                      ..+++|++++|.+++..+.+|.++++|++|++++|.++ .+++.+|.++++|++|++++|+++++.|.+|.++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            34555555555555554445555555555555555554 34333455555555555555555555555555555555555


Q ss_pred             cccccCCcccCccccCCCCCCCEEEccCccccc-ccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccc----cEEE
Q 040607          122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQI-PISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQL----NSII  196 (629)
Q Consensus       122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L----~~L~  196 (629)
                      +++|.++ .++...++++++|++|++++|.+++ .++ ..+.++++|++|++++|.+..... ..+..+.+|    ..++
T Consensus       111 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~L~  187 (606)
T 3vq2_A          111 AVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITV-NDLQFLRENPQVNLSLD  187 (606)
T ss_dssp             CTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECT-TTTHHHHHCTTCCCEEE
T ss_pred             ccCCccc-cccccccCCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcceecCh-hhhhhhhccccccceee
Confidence            5555554 3433345555555555555555542 122 345555555555555555544322 112222222    2455


Q ss_pred             eccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEE--------------------------------e
Q 040607          197 LSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL--------------------------------V  244 (629)
Q Consensus       197 l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L--------------------------------~  244 (629)
                      ++.+....++.......+|++|++++|.+.+......+..++.++.+                                +
T Consensus       188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  267 (606)
T 3vq2_A          188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR  267 (606)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred             ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence            55444444443333333455555555544322222222344444433                                3


Q ss_pred             c-cCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccc
Q 040607          245 Q-VNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKG  323 (629)
Q Consensus       245 l-~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  323 (629)
                      + ..+.+.+..+. +..+++|+.|++++|.+.....+..+++|++|++++|.+. .+|..   .+++|++|++++|+..+
T Consensus       268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~---~l~~L~~L~l~~n~~~~  342 (606)
T 3vq2_A          268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL---DLPFLKSLTLTMNKGSI  342 (606)
T ss_dssp             ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCC---CCSSCCEEEEESCSSCE
T ss_pred             ccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccC---CCCccceeeccCCcCcc
Confidence            3 44555555554 8889999999999999987667888999999999999994 88843   59999999999996554


Q ss_pred             ccCcccCCCCCCcEEEccCCcCccc--CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCC-cc
Q 040607          324 HIFSKKINLTNLWRLQLDGNHFIGE--IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP-ME  400 (629)
Q Consensus       324 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~  400 (629)
                      ..  .+..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.+..+ ..
T Consensus       343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence            33  677899999999999998866  47889999999999999999884 66889999999999999999998877 68


Q ss_pred             ccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCC-CCccccccccccceEeccCccccccccc
Q 040607          401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLILS  479 (629)
Q Consensus       401 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  479 (629)
                      +..+++|++|++++|.+.+..|..+..        +++|+.|++++|.+++ ..|..+..+++|++|++++|.+++.+|.
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLG--------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             hhccccCCEEECcCCCCCccchhhhcC--------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence            999999999999999999988888877        8999999999999986 3788899999999999999999999999


Q ss_pred             cccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcccccc-ccCCCCCCCCCCCCCCCC
Q 040607          480 TFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA-TFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       480 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~~~~np~~c~~C~  551 (629)
                      .|.++++|++|++++|++++..|..|..+++|+.|++++|+++ .+|..+..++ +++.+++++|||.| +|+
T Consensus       492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c-~c~  562 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC-ICE  562 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC-SST
T ss_pred             hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc-CCc
Confidence            9999999999999999999988999999999999999999999 4555577776 59999999999999 786

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-53  Score=474.52  Aligned_cols=518  Identities=18%  Similarity=0.153  Sum_probs=408.9

Q ss_pred             hhccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCcc
Q 040607            6 IELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQ   85 (629)
Q Consensus         6 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~   85 (629)
                      ..++++++|++|||++|.+.+..|..++.+      ..|++|++++|.+++..+.+|+++++|++|++++|.++ .+++.
T Consensus        43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~  115 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNTISKLEPELCQKL------PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNN  115 (680)
T ss_dssp             GGGGGGTTCSEEECCSSCCCCCCTTHHHHC------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSC
T ss_pred             HHHhCCCcCcEEECCCCccCccCHHHHhcc------cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChh
Confidence            468889999999999999998888888887      58999999999999776678999999999999999998 77766


Q ss_pred             ccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccC--CCCCCCEEEccCcccccccCCcccCC
Q 040607           86 GLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLK--HLKSIQELKLSNNYFQIPISLGPLYN  163 (629)
Q Consensus        86 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~  163 (629)
                      +|.++++|++|++++|.+++.++..+.++++|++|++++|.++ .++...+.  .+++|++|++++|.+++..+ ..+..
T Consensus       116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~  193 (680)
T 1ziw_A          116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHA  193 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGG
T ss_pred             HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEEECCCCcccccCh-hhhhh
Confidence            8999999999999999999999888999999999999999998 55543443  56888999998888763222 23332


Q ss_pred             C---------------------------CCCcEEECCCCcceeecCCCCcCCcc--cccEEEeccCCCCC-cChhhcCCC
Q 040607          164 H---------------------------SNLKIFDSENNQIYAQTESHSLTPKF--QLNSIILSHGSGVT-FPKFLYHQH  213 (629)
Q Consensus       164 l---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~l~~~~  213 (629)
                      +                           ++|+.|++++|.+.+..+. .+..+.  +|+.|+++++.... .|..+..++
T Consensus       194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (680)
T 1ziw_A          194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP  272 (680)
T ss_dssp             SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCCCCcCccCcccccCcc
Confidence            2                           3445555555554433221 122222  35555555333322 234455555


Q ss_pred             CCCEEEccCCCCCCCCChh--------------------------------HHhcCCCCcEEeccCccccccCCCCcccC
Q 040607          214 DLKHVNLSHINLRGEFPNW--------------------------------LSENNTKLQTLVQVNNYLSGIFQMPKHAR  261 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~--------------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  261 (629)
                      +|++|++++|++.+..|..                                .+..+++|++|++++|.+.++.+..|..+
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  352 (680)
T 1ziw_A          273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL  352 (680)
T ss_dssp             TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC
T ss_pred             cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc
Confidence            5555555555544332221                                23567889999999999999888899999


Q ss_pred             CCccEEEccCCCCcccc-c---CCC--CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccC-cccCCCCC
Q 040607          262 RHLTYLDVSDNFFQVHI-P---VGN--MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF-SKKINLTN  334 (629)
Q Consensus       262 ~~L~~L~L~~n~~~~~~-~---~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~  334 (629)
                      ++|++|++++|.+.... +   +..  .++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..+ ..|.++++
T Consensus       353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~  431 (680)
T 1ziw_A          353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN  431 (680)
T ss_dssp             TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred             cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-hhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence            99999999999754221 1   222  3689999999999995444 455569999999999999987555 68899999


Q ss_pred             CcEEEccCCcCcccCchhhhccccCCceeccccccC--CCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEc
Q 040607          335 LWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS--GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDI  412 (629)
Q Consensus       335 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  412 (629)
                      |+.|++++|.+.+..+..|..+++|+.|++++|.+.  +..|..+..+++|+.|++++|.+++..+..|..+++|++|++
T Consensus       432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L  511 (680)
T 1ziw_A          432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL  511 (680)
T ss_dssp             CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeC
Confidence            999999999999888999999999999999999986  467889999999999999999999888888999999999999


Q ss_pred             ccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEEC
Q 040607          413 SKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDL  492 (629)
Q Consensus       413 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  492 (629)
                      ++|.+.+..+..+..........+++|+.|++++|.++...+..|.++++|++|+|++|+++++++..|.++++|+.|++
T Consensus       512 s~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  591 (680)
T 1ziw_A          512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL  591 (680)
T ss_dssp             CSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence            99999765433221111111234899999999999999555567999999999999999999999999999999999999


Q ss_pred             cCCcCCCCCCcccc-CCCCCCEEEcccCcCcccCC--Cccccccc
Q 040607          493 SYNKLTGKIPPQLV-ELNALAVFSVAHNKLSGKTP--DWVAQFAT  534 (629)
Q Consensus       493 ~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~--~~~~~~~~  534 (629)
                      ++|++++..|..+. .+++|+.+++++|++.|.++  .||..+..
T Consensus       592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~  636 (680)
T 1ziw_A          592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN  636 (680)
T ss_dssp             TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred             CCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence            99999988887777 78999999999999999987  56655533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-53  Score=467.42  Aligned_cols=486  Identities=17%  Similarity=0.165  Sum_probs=421.8

Q ss_pred             CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607           12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV   91 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~   91 (629)
                      ++|++|||++|.+.+..+..++.+      ..|++|++++|.+++..|.+|+++++|++|+|++|.++ .+++.+|.+++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~  104 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNF------SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLT  104 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCT
T ss_pred             CCcCEEECCCCCcCEeChhhccCC------ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcCCcc
Confidence            789999999999998888888777      58999999999999988999999999999999999998 56555899999


Q ss_pred             CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCC---
Q 040607           92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL---  167 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L---  167 (629)
                      +|++|++++|.++++++..|.++++|++|++++|.+++ .+|. .++++++|++|++++|.+++ ++...+..+++|   
T Consensus       105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~  182 (606)
T 3vq2_A          105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQV  182 (606)
T ss_dssp             TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTC
T ss_pred             cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCccee-cChhhhhhhhccccc
Confidence            99999999999999998899999999999999999984 4565 89999999999999999984 444456665555   


Q ss_pred             -cEEECCCCcceeecCCCCcCCcccccEEEeccCCCC--CcChhhcCCCCCCEEEc------------------------
Q 040607          168 -KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV--TFPKFLYHQHDLKHVNL------------------------  220 (629)
Q Consensus       168 -~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~L------------------------  220 (629)
                       ..|++++|.+....+.. +. ..+|++|+++++...  ..|..+..++.++.+++                        
T Consensus       183 l~~L~l~~n~l~~~~~~~-~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~  260 (606)
T 3vq2_A          183 NLSLDMSLNPIDFIQDQA-FQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD  260 (606)
T ss_dssp             CCEEECTTCCCCEECTTT-TT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred             cceeeccCCCcceeCccc-cc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence             48999999998765533 33 338999999966543  45677777777777666                        


Q ss_pred             ---------cCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEec
Q 040607          221 ---------SHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDL  291 (629)
Q Consensus       221 ---------~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L  291 (629)
                               ..+.+.+..|.  +..+++|+.+++++|.+..++  .+..+++|++|++++|.+.....+ .+++|+.|++
T Consensus       261 l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l  335 (606)
T 3vq2_A          261 VTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTL  335 (606)
T ss_dssp             SEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEE
T ss_pred             ccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcccccC-CCCccceeec
Confidence                     44555655555  467899999999999998765  788899999999999999655556 8999999999


Q ss_pred             cCCCCCcccchhhhhCCCCCcEEEccCccccccc--CcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecccccc
Q 040607          292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI--FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHL  369 (629)
Q Consensus       292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  369 (629)
                      ++|...+.+   .+..+++|++|++++|.+++..  +..+..+++|+.|++++|.+++ .|..+..+++|+.|++++|.+
T Consensus       336 ~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l  411 (606)
T 3vq2_A          336 TMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL  411 (606)
T ss_dssp             ESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE
T ss_pred             cCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc
Confidence            999665444   2335899999999999998763  7788899999999999999885 457899999999999999999


Q ss_pred             CCCcc-ccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-CCCCCcCCCccccCCCccCCCeeecccc
Q 040607          370 SGKIP-RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDLSCN  447 (629)
Q Consensus       370 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L~~n  447 (629)
                      .+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..        +++|+.|++++|
T Consensus       412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~Ls~n  483 (606)
T 3vq2_A          412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------TTNLTFLDLSKC  483 (606)
T ss_dssp             ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTS
T ss_pred             CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--------CCCCCEEECCCC
Confidence            98777 688999999999999999999999999999999999999999987 46777766        899999999999


Q ss_pred             cCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC-CCCEEEcccCcCcccCC
Q 040607          448 KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN-ALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       448 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~  526 (629)
                      .+++..|..+..+++|++|++++|++++.+|..|.++++|++|++++|+++ .+|..+..++ +|+.|++++|++.|.++
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999888899999999999999999999999999999999999999999999 6677788887 59999999999999888

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-53  Score=463.03  Aligned_cols=499  Identities=19%  Similarity=0.130  Sum_probs=423.6

Q ss_pred             chhccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCc
Q 040607            5 LIELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILD   84 (629)
Q Consensus         5 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~   84 (629)
                      +.+++++++|++|+|++|.+.+..|..++.+      ..|++|++++|.+.+..|.+++++++|++|++++|.++ .+++
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~  122 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ------HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDF  122 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTTTTTC------TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGG
T ss_pred             hhHhccCccceEEECCCCccceeChhhccCc------cccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCc
Confidence            4578999999999999999999888888887      58999999999999999999999999999999999998 6655


Q ss_pred             cccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCC--EEEccCcccccccCCcccC
Q 040607           85 QGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ--ELKLSNNYFQIPISLGPLY  162 (629)
Q Consensus        85 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~  162 (629)
                      ..|.++++|++|++++|.++++....+.++++|++|++++|.++ .++...++.+++|+  +|++++|.+++. +...+ 
T Consensus       123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~-~~~~~-  199 (606)
T 3t6q_A          123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAF-  199 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEE-CTTTT-
T ss_pred             chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCcc-ChhHh-
Confidence            58999999999999999999876556777999999999999998 66665899999999  999999999853 33344 


Q ss_pred             CCCCCcEEECCCCcceeecCCCCcCCcccccEEEecc---CCCCCc-ChhhcCCC--CCCEEEccCCCCCCCCChhHHhc
Q 040607          163 NHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSH---GSGVTF-PKFLYHQH--DLKHVNLSHINLRGEFPNWLSEN  236 (629)
Q Consensus       163 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~---~~~~~~-~~~l~~~~--~L~~L~L~~n~l~~~~~~~~~~~  236 (629)
                      ...+|+.|++++|.......  .-.....++.+.+..   .....+ +..+..+.  +|+.|++++|++.+..+.. +..
T Consensus       200 ~~~~L~~L~l~~~~~~~~~~--~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-~~~  276 (606)
T 3t6q_A          200 DSAVFQSLNFGGTQNLLVIF--KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHC  276 (606)
T ss_dssp             TTCEEEEEECTTCSCHHHHH--HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-TTT
T ss_pred             hhccccccccCCchhHHHHh--hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH-hcc
Confidence            44689999999986211100  001111333444331   111112 22233332  7999999999998554444 478


Q ss_pred             CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEE
Q 040607          237 NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYL  314 (629)
Q Consensus       237 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  314 (629)
                      +++|+.|++++|.++.+ +..+..+++|++|++++|.+....+  +..+++|+.|++++|.+.+.++...+..+++|++|
T Consensus       277 l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          277 FSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             CTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             ccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            99999999999999965 4468899999999999999987655  78899999999999999888888777779999999


Q ss_pred             EccCccccccc--CcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccc-cccCCCCCccccCCCC
Q 040607          315 VLSNNKMKGHI--FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPR-WLGNLSVSEDVIMPNN  391 (629)
Q Consensus       315 ~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n  391 (629)
                      ++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            99999998776  77889999999999999999988899999999999999999999876554 4889999999999999


Q ss_pred             cccCCCCccccCCCcccEEEcccCcCCCC---CCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEec
Q 040607          392 HLEGPIPMEFCQLNFLQILDISKKNIFGS---LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV  468 (629)
Q Consensus       392 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  468 (629)
                      .+.+..+..+..+++|++|++++|++.+.   .+..+..        +++|+.|++++|.+++..|..|..+++|++|+|
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc--------CCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence            99998999999999999999999999763   2244544        899999999999999888899999999999999


Q ss_pred             cCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       469 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ++|++++..|..|.++++| .|++++|++++..|..+..+++|+.|++++|++.|.++
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999 99999999998888889999999999999999999887

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-53  Score=477.26  Aligned_cols=483  Identities=19%  Similarity=0.214  Sum_probs=393.1

Q ss_pred             CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccc-hhhhcCCCCCCEEEccCCcCCCccCccccCC
Q 040607           11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNF-LQVIKSMTSLKLLSLSNSRLNGTILDQGLCE   89 (629)
Q Consensus        11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~   89 (629)
                      .++|++|||++|.+++..+..++.+      ..|++|+|++|...+.+ |.+|+++++|++|+|++|.++ .+++.+|.+
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l------~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~   95 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFL------EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQG   95 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSC------CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCS
T ss_pred             CCCcCEEECCCCcCCccChhHCccc------ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccC
Confidence            5789999999999988888888777      58899999999665555 788999999999999999998 554558999


Q ss_pred             CCCCcEEEccCCcCccCCCc--ccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCC--C
Q 040607           90 FVHLQELHVDHNNLYGVPPW--CLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNH--S  165 (629)
Q Consensus        90 l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~  165 (629)
                      +++|++|+|++|.+++..+.  .|.++++|++|++++|.+++..+...++++++|++|++++|.+++. ....+..+  +
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~  174 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGK  174 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHC
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCC
Confidence            99999999999999875443  4889999999999999998444444789999999999999988743 33456655  7


Q ss_pred             CCcEEECCCCcceeecCCCCcCCc------ccccEEEeccCC-CCCcChh------------------------------
Q 040607          166 NLKIFDSENNQIYAQTESHSLTPK------FQLNSIILSHGS-GVTFPKF------------------------------  208 (629)
Q Consensus       166 ~L~~L~l~~n~~~~~~~~~~~~~~------~~L~~L~l~~~~-~~~~~~~------------------------------  208 (629)
                      +|+.|++++|.+....... +..+      ..|+.|+++.+. ....+..                              
T Consensus       175 ~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             ccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            8888888888776543321 1221      247888887442 2222211                              


Q ss_pred             ------hcC--CCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-
Q 040607          209 ------LYH--QHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-  279 (629)
Q Consensus       209 ------l~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-  279 (629)
                            +..  .++|++|++++|.+.+..+..+ ..+++|+.|++++|.++...+..|..+++|++|++++|.+....+ 
T Consensus       254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred             CCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence                  112  2689999999999986666554 789999999999999999999999999999999999999987655 


Q ss_pred             -CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhcccc
Q 040607          280 -VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNL  358 (629)
Q Consensus       280 -~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  358 (629)
                       +..+++|+.|++++|.+. .++...+..+++|++|++++|.+++.     ..+++|+.|++++|.++. +|..   ..+
T Consensus       333 ~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~  402 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLT  402 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTT
T ss_pred             HhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccc
Confidence             889999999999999998 66666667799999999999998853     337899999999999984 4433   567


Q ss_pred             CCceeccccccCCCc-cccccCCCCCccccCCCCcccCCCCc-cccCCCcccEEEcccCcCCCCC-----CCCcCCCccc
Q 040607          359 FGGLYLSDNHLSGKI-PRWLGNLSVSEDVIMPNNHLEGPIPM-EFCQLNFLQILDISKKNIFGSL-----PSCFNPFSIK  431 (629)
Q Consensus       359 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~~~  431 (629)
                      ++.|++++|.+.+.. +..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+....     +..+..    
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~----  478 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG----  478 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC----
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC----
Confidence            899999999998643 33466899999999999999865443 4667899999999999987433     344444    


Q ss_pred             cCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCC
Q 040607          432 QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNAL  511 (629)
Q Consensus       432 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  511 (629)
                          +++|+.|+|++|.+++..|..|.++++|+.|+|++|+++++++..+.  ++|+.|++++|++++..|+.|   ++|
T Consensus       479 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L  549 (844)
T 3j0a_A          479 ----LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSL  549 (844)
T ss_dssp             ----BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSC
T ss_pred             ----cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCc
Confidence                89999999999999988888999999999999999999998888776  899999999999999988775   479


Q ss_pred             CEEEcccCcCcccCC
Q 040607          512 AVFSVAHNKLSGKTP  526 (629)
Q Consensus       512 ~~L~l~~N~l~~~~~  526 (629)
                      +.|++++|++.|.++
T Consensus       550 ~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          550 SVLDITHNKFICECE  564 (844)
T ss_dssp             CEEEEEEECCCCSSS
T ss_pred             CEEEecCCCcccccc
Confidence            999999999999887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-49  Score=428.28  Aligned_cols=489  Identities=18%  Similarity=0.162  Sum_probs=374.1

Q ss_pred             CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607           12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV   91 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~   91 (629)
                      +++++||+++|.+++..+..++.+      ..|++|++++|.+++..+.+|+++++|++|+|++|.++ .+++.+|.+++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  100 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSF------PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS  100 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTC------SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCT
T ss_pred             ccccEEEccCCccCccChhHhhCC------CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcc
Confidence            467788888887777766666665      46778888888877777777778888888888888777 56655777888


Q ss_pred             CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCC---
Q 040607           92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL---  167 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L---  167 (629)
                      +|++|++++|+++++++..|.++++|++|++++|.+++ .+|. .++++++|++|++++|.++ ..+...+..+++|   
T Consensus       101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~  178 (570)
T 2z63_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL  178 (570)
T ss_dssp             TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTC
T ss_pred             ccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc-eecHHHccchhccchh
Confidence            88888888888777776667778888888888887763 2454 6777888888888888776 3333456666666   


Q ss_pred             -cEEECCCCcceeecCCCCcCCcccccEEEeccCCC--CCcChhhcCCCCCCEEEccCCCCCC-----CCChhHHhcCC-
Q 040607          168 -KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG--VTFPKFLYHQHDLKHVNLSHINLRG-----EFPNWLSENNT-  238 (629)
Q Consensus       168 -~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~-  238 (629)
                       +.+++++|.+....+.. +. ..+|++|+++++..  ..++..+..++.++...+....+..     .++...+..++ 
T Consensus       179 ~~~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~  256 (570)
T 2z63_A          179 NLSLDLSLNPMNFIQPGA-FK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  256 (570)
T ss_dssp             CCEEECTTCCCCEECTTT-TT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred             hhhcccCCCCceecCHHH-hc-cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence             67788887776654422 22 22677777775432  2355666667666665554322110     12222222333 


Q ss_pred             -CCcEEeccCc-cccccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEE
Q 040607          239 -KLQTLVQVNN-YLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLV  315 (629)
Q Consensus       239 -~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  315 (629)
                       .++.+++.++ .+.+..+..+..+++|+.|++++|.+..... +..+ +|+.|++++|.+. .+|..   .+++|++|+
T Consensus       257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~  331 (570)
T 2z63_A          257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLT  331 (570)
T ss_dssp             SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEE
T ss_pred             cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEe
Confidence             2455666666 6666777888899999999999998876544 5566 9999999999988 77763   478999999


Q ss_pred             ccCcccccccCcccCCCCCCcEEEccCCcCcccC--chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcc
Q 040607          316 LSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI--PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL  393 (629)
Q Consensus       316 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  393 (629)
                      +++|.+.+..+.  ..+++|+.|++++|.+++..  +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+
T Consensus       332 l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l  408 (570)
T 2z63_A          332 FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL  408 (570)
T ss_dssp             EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEE
T ss_pred             CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcc
Confidence            999988765554  67899999999999987654  67888999999999999998854444 88899999999999999


Q ss_pred             cCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC-CCCccccccccccceEeccCc
Q 040607          394 EGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHN  471 (629)
Q Consensus       394 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n  471 (629)
                      .+..+ ..+..+++|++|++++|.+.+..|..+..        +++|+.|++++|.++ +.+|..+..+++|++|++++|
T Consensus       409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             ccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            87665 56889999999999999998888888776        899999999999987 467888999999999999999


Q ss_pred             cccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCC
Q 040607          472 KLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD  527 (629)
Q Consensus       472 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  527 (629)
                      ++++..|..|.++++|++|++++|++++..|..|..+++|+.|++++|++.|.+|.
T Consensus       481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99998888999999999999999999988888899999999999999999998884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-48  Score=425.51  Aligned_cols=481  Identities=20%  Similarity=0.194  Sum_probs=394.5

Q ss_pred             cEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCc
Q 040607           15 ENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQ   94 (629)
Q Consensus        15 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~   94 (629)
                      ++.+-++..++ .+|.        .++..+++|++++|.+++..+.+|.++++|++|++++|.++ .+++++|.++++|+
T Consensus        10 ~~~~c~~~~l~-~ip~--------~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~   79 (570)
T 2z63_A           10 ITYQCMELNFY-KIPD--------NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS   79 (570)
T ss_dssp             TEEECCSSCCS-SCCS--------SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred             cEEEeCCCCcc-ccCC--------CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCC
Confidence            45566655542 2333        23457889999999999888889999999999999999998 67766899999999


Q ss_pred             EEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCccccc-ccCCcccCCCCCCcEEECC
Q 040607           95 ELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQI-PISLGPLYNHSNLKIFDSE  173 (629)
Q Consensus        95 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~  173 (629)
                      +|++++|+++++++.+|.++++|++|++++|.++ .++...++++++|++|++++|.++. .++ ..+.++++|++|+++
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~  157 (570)
T 2z63_A           80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLS  157 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECT
T ss_pred             EEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCc
Confidence            9999999999999889999999999999999998 7776579999999999999998874 233 568899999999999


Q ss_pred             CCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCC----CEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc
Q 040607          174 NNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDL----KHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY  249 (629)
Q Consensus       174 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L----~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  249 (629)
                      +|.+....                        +..+..+++|    +.+++++|.+.+..+..+ .. .+|+.|++++|.
T Consensus       158 ~n~l~~~~------------------------~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~-~~-~~L~~L~l~~n~  211 (570)
T 2z63_A          158 SNKIQSIY------------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KE-IRLHKLTLRNNF  211 (570)
T ss_dssp             TSCCCEEC------------------------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TT-CEEEEEEEESCC
T ss_pred             CCccceec------------------------HHHccchhccchhhhhcccCCCCceecCHHHh-cc-CcceeEeccccc
Confidence            99876542                        2345555556    899999999986666554 33 378999988763


Q ss_pred             cc-------------------------------ccCCCCcccCCC--ccEEEccCC-CCccccc--CCCCCCccEEeccC
Q 040607          250 LS-------------------------------GIFQMPKHARRH--LTYLDVSDN-FFQVHIP--VGNMKSLSVLDLSK  293 (629)
Q Consensus       250 ~~-------------------------------~~~~~~~~~~~~--L~~L~L~~n-~~~~~~~--~~~~~~L~~L~L~~  293 (629)
                      ..                               .+....+..++.  ++.++++++ .+.+..+  +..+++|+.|++++
T Consensus       212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  291 (570)
T 2z63_A          212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS  291 (570)
T ss_dssp             SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred             ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence            21                               122223333332  445566655 3333333  67789999999999


Q ss_pred             CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607          294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI  373 (629)
Q Consensus       294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  373 (629)
                      |.+. .+|..+.. + +|++|++++|.+.. .|.  ..+++|+.|++++|.+.+..+.  ..+++|+.|++++|.+.+..
T Consensus       292 ~~l~-~l~~~~~~-~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~  363 (570)
T 2z63_A          292 VTIE-RVKDFSYN-F-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG  363 (570)
T ss_dssp             CEEC-SCCBCCSC-C-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE
T ss_pred             ccch-hhhhhhcc-C-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc
Confidence            9988 78877664 5 99999999999984 343  4688999999999998766654  78899999999999988543


Q ss_pred             --cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCC-CCcCCCccccCCCccCCCeeecccccCC
Q 040607          374 --PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP-SCFNPFSIKQGKPLNSMSGLDLSCNKLT  450 (629)
Q Consensus       374 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~  450 (629)
                        +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..        +++|+.|++++|.+.
T Consensus       364 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          364 CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS--------LRNLIYLDISHTHTR  434 (570)
T ss_dssp             EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT--------CTTCCEEECTTSCCE
T ss_pred             cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc--------CCCCCEEeCcCCccc
Confidence              67788999999999999999865544 9999999999999999987766 45555        899999999999999


Q ss_pred             CCCccccccccccceEeccCcccc-ccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcc
Q 040607          451 GEIPLRIGNLTRIHTLNVSHNKLT-GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV  529 (629)
Q Consensus       451 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  529 (629)
                      +..|..+.++++|++|++++|.++ +..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++++..+..+
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            888899999999999999999998 5678899999999999999999998889999999999999999999999988888


Q ss_pred             ccccccCCCCCCCCCCCCCCCC
Q 040607          530 AQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       530 ~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      ..+++++.+++++||+.| +|+
T Consensus       515 ~~l~~L~~L~l~~N~~~~-~~~  535 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDC-SCP  535 (570)
T ss_dssp             TTCTTCCEEECCSSCBCC-CTT
T ss_pred             hcccCCcEEEecCCcccC-CCc
Confidence            999999999999999999 775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-48  Score=423.19  Aligned_cols=482  Identities=18%  Similarity=0.151  Sum_probs=295.5

Q ss_pred             cEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCc
Q 040607           15 ENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQ   94 (629)
Q Consensus        15 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~   94 (629)
                      .+.|.+++.++ .+|..        ++..+++|++++|.+++..|.+++++++|++|++++|.++ .+++.+|.++++|+
T Consensus         8 ~~c~~~~~~l~-~ip~~--------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~   77 (549)
T 2z81_A            8 GVCDGRSRSFT-SIPSG--------LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLE   77 (549)
T ss_dssp             SEEECTTSCCS-SCCSC--------CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred             ceEECCCCccc-ccccc--------CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCC
Confidence            34577777664 33332        2357889999999999888888999999999999999998 66666899999999


Q ss_pred             EEEccCCcCccCCCcccCCCCCCCeeecccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECC
Q 040607           95 ELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSE  173 (629)
Q Consensus        95 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  173 (629)
                      +|++++|.++++++..|.++++|++|++++|.+++ .++. .++++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            99999999999888889999999999999999873 2233 789999999999999985546666678899999999999


Q ss_pred             CCcceeecCCCCcCCcccccEEEeccCCCCCcChhh-cCCCCCCEEEccCCCCCCCC--ChhHHhcCCCCcEEeccCccc
Q 040607          174 NNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL-YHQHDLKHVNLSHINLRGEF--PNWLSENNTKLQTLVQVNNYL  250 (629)
Q Consensus       174 ~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~~  250 (629)
                      +|.+.+..+ ..+..+.+|+.|+++.+....+|..+ ..+++|++|++++|++.+..  +..+...+++|+.|++++|.+
T Consensus       157 ~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  235 (549)
T 2z81_A          157 ALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL  235 (549)
T ss_dssp             ETTCCEECT-TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred             CCcccccCh-hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence            998866543 33445556666666655555555443 34666777777776665421  222223456666666666655


Q ss_pred             cccCC----CCcccCCCccEEEccCCCCccccc--------CCCCCCccEEeccCCCCCcccc----hhhhhCCCCCcEE
Q 040607          251 SGIFQ----MPKHARRHLTYLDVSDNFFQVHIP--------VGNMKSLSVLDLSKNRLIGKIP----ERLAMGCFSLRYL  314 (629)
Q Consensus       251 ~~~~~----~~~~~~~~L~~L~L~~n~~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L  314 (629)
                      ++...    ..+..+++++.+++++|.+.+...        +..+++++.|++.++.+.....    ...+...++|++|
T Consensus       236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L  315 (549)
T 2z81_A          236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI  315 (549)
T ss_dssp             EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred             chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence            53221    123345566666666665543221        3445566666666555432100    0111224456666


Q ss_pred             EccCcccccccCcccCCCCCCcEEEccCCcCcccCch---hhhccccCCceeccccccCCCcc--ccccCCCCCccccCC
Q 040607          315 VLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPE---SLSNCNLFGGLYLSDNHLSGKIP--RWLGNLSVSEDVIMP  389 (629)
Q Consensus       315 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~  389 (629)
                      ++++|.+.......+..+++|+.|++++|.+++..|.   .+..+++|+.|++++|.+++..+  ..+..+++|+.|+++
T Consensus       316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred             EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence            6666665532222223456666666666665544322   24455566666666666553321  335555666666666


Q ss_pred             CCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEecc
Q 040607          390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS  469 (629)
Q Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  469 (629)
                      +|.++ .+|..+..+++|++|++++|.+.+. |..+          .++|+.|++++|++++..    ..+++|++|+|+
T Consensus       396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~----------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls  459 (549)
T 2z81_A          396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI----------PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS  459 (549)
T ss_dssp             TCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS----------CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred             CCCCc-cCChhhcccccccEEECCCCCcccc-cchh----------cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence            66555 3445555555666666666655322 2221          245555666666555321    345556666666


Q ss_pred             CccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          470 HNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       470 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      +|+++.++.  ...+++|++|++++|++++..|+.+..+++|+.|++++|++.|.+|
T Consensus       460 ~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          460 RNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            665553322  2345556666666666655555555555566666666666555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.8e-47  Score=422.05  Aligned_cols=493  Identities=19%  Similarity=0.150  Sum_probs=365.0

Q ss_pred             hhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCe
Q 040607           40 VQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV  119 (629)
Q Consensus        40 ~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  119 (629)
                      +|..+++|||++|.|++..+.+|.++++|++|+|++|.++ .+++++|.++++|++|+|++|+++++++.+|.++++|++
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            3456777788877777766677777777888888777777 666667777777888888877777777777777777888


Q ss_pred             eecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcc----cccEE
Q 040607          120 LNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKF----QLNSI  195 (629)
Q Consensus       120 L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~----~L~~L  195 (629)
                      |++++|.++ .++...|+++++|++|++++|.++.......+..+++|++|++++|.+....... +..+.    ....+
T Consensus       129 L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~  206 (635)
T 4g8a_A          129 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSL  206 (635)
T ss_dssp             EECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEE
T ss_pred             EECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhh
Confidence            888777777 6666567777778888887777763222345667777778887777776543321 11111    22344


Q ss_pred             EeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEec------------------------------
Q 040607          196 ILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ------------------------------  245 (629)
Q Consensus       196 ~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l------------------------------  245 (629)
                      +++.+....++........++.+++.+|......+...+..++.++...+                              
T Consensus       207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l  286 (635)
T 4g8a_A          207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  286 (635)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred             hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence            45544444444444444445555555554332222333334444433332                              


Q ss_pred             cCcccc---ccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccc
Q 040607          246 VNNYLS---GIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK  322 (629)
Q Consensus       246 ~~n~~~---~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  322 (629)
                      ..+...   ......+.....++.+++.++.+....++.....++.|++.+|.+. .++..   .+..|+.+++..|.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSC
T ss_pred             hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCC
Confidence            211111   1122345566778888888887776666777788999999998876 34332   3678999999998876


Q ss_pred             cccCcccCCCCCCcEEEccCCcCcc--cCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCC-Cc
Q 040607          323 GHIFSKKINLTNLWRLQLDGNHFIG--EIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI-PM  399 (629)
Q Consensus       323 ~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~  399 (629)
                      ...  .+..+++|+.+++++|.+..  ..+..+..+.+|+.+++..+... ..+..+..++.|+.+++..+...... ..
T Consensus       363 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~  439 (635)
T 4g8a_A          363 NAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS  439 (635)
T ss_dssp             CBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred             CCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccc
Confidence            433  34578999999999998753  45667778899999999998876 34556788999999999988776554 35


Q ss_pred             cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC-CCCccccccccccceEeccCcccccccc
Q 040607          400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHNKLTGLIL  478 (629)
Q Consensus       400 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  478 (629)
                      .+..+++++.++++.|.+.+..+..+..        ++.++.|++++|.+. +..|..|..+++|++|+|++|++++++|
T Consensus       440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~--------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~  511 (635)
T 4g8a_A          440 VFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  511 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTT--------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             cccccccccccccccccccccccccccc--------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence            6888999999999999998888888766        899999999999753 3567889999999999999999999999


Q ss_pred             ccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc-cccCCCCCCCCCCCCCCCC
Q 040607          479 STFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF-ATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       479 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~~~~np~~c~~C~  551 (629)
                      ..|.++++|++|+|++|+|++..|..|.++++|++||+++|++++..|..+..+ .+++.+++++|||.| +|+
T Consensus       512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C-~C~  584 (635)
T 4g8a_A          512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC-TCE  584 (635)
T ss_dssp             TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC-SGG
T ss_pred             HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc-cCC
Confidence            999999999999999999999889999999999999999999999999988887 689999999999999 775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.4e-47  Score=413.07  Aligned_cols=463  Identities=17%  Similarity=0.121  Sum_probs=387.0

Q ss_pred             CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607           12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV   91 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~   91 (629)
                      ++|++|||++|.+++..|..++.+      ..|++|++++|.+++..|++|+++++|++|++++|.++ .+++..|.+++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRAC------ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSC------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCT
T ss_pred             CCccEEECcCCccCccChhhhhcC------CcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCC
Confidence            589999999999998888888776      58999999999999988899999999999999999998 67765799999


Q ss_pred             CCcEEEccCCcCccC-CCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607           92 HLQELHVDHNNLYGV-PPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF  170 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  170 (629)
                      +|++|++++|.++++ .+..|.++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+ ..+..+++|+.|
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L  177 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHL  177 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceE
Confidence            999999999999875 346899999999999999985558887689999999999999999985544 578999999999


Q ss_pred             ECCCCcceeecCCCCcCCcccccEEEeccCCCCCc---C-hhhcCCCCCCEEEccCCCCCCCCChhHH---hcCCCCcEE
Q 040607          171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF---P-KFLYHQHDLKHVNLSHINLRGEFPNWLS---ENNTKLQTL  243 (629)
Q Consensus       171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L  243 (629)
                      ++++|.+..... ..+..+.+|++|+++++....+   | .....+++|+.|++++|.+.+..+..+.   ..+++++.+
T Consensus       178 ~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l  256 (549)
T 2z81_A          178 TLHLSESAFLLE-IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV  256 (549)
T ss_dssp             EEECSBSTTHHH-HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred             ecccCcccccch-hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence            999998643322 1123467999999996665543   2 2234578899999999988765554432   457899999


Q ss_pred             eccCccccccCC------CCcccCCCccEEEccCCCCcccccCC-------CCCCccEEeccCCCCCcccchhhhhCCCC
Q 040607          244 VQVNNYLSGIFQ------MPKHARRHLTYLDVSDNFFQVHIPVG-------NMKSLSVLDLSKNRLIGKIPERLAMGCFS  310 (629)
Q Consensus       244 ~l~~n~~~~~~~------~~~~~~~~L~~L~L~~n~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  310 (629)
                      ++++|.+.+...      ..+..+++++.+++.++.+.....+.       ..++|+.|++++|.+. .+|..++..+++
T Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~  335 (549)
T 2z81_A          257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS  335 (549)
T ss_dssp             EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTT
T ss_pred             ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcc
Confidence            999998876532      24567889999999999876543322       3468999999999988 899988777999


Q ss_pred             CcEEEccCcccccccC---cccCCCCCCcEEEccCCcCcccCc--hhhhccccCCceeccccccCCCccccccCCCCCcc
Q 040607          311 LRYLVLSNNKMKGHIF---SKKINLTNLWRLQLDGNHFIGEIP--ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED  385 (629)
Q Consensus       311 L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  385 (629)
                      |++|++++|++.+..+   ..+..+++|+.|++++|.+++..+  ..+..+++|++|++++|++. .+|..+..+++|+.
T Consensus       336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~  414 (549)
T 2z81_A          336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF  414 (549)
T ss_dssp             CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred             ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccE
Confidence            9999999999987653   347789999999999999986543  56889999999999999998 67888889999999


Q ss_pred             ccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccce
Q 040607          386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHT  465 (629)
Q Consensus       386 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  465 (629)
                      |++++|.+.+. +..+  .++|++|++++|++.+...    .        +++|+.|++++|+++ .+|. ...+++|++
T Consensus       415 L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~~----~--------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~  477 (549)
T 2z81_A          415 LNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFSL----F--------LPRLQELYISRNKLK-TLPD-ASLFPVLLV  477 (549)
T ss_dssp             EECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCCC----C--------CTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred             EECCCCCcccc-cchh--cCCceEEECCCCChhhhcc----c--------CChhcEEECCCCccC-cCCC-cccCccCCE
Confidence            99999999843 3332  2689999999999977532    2        789999999999998 6665 467899999


Q ss_pred             EeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607          466 LNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP  502 (629)
Q Consensus       466 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  502 (629)
                      |+|++|++++.++..|..+++|+.|++++|++++..|
T Consensus       478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999999999999999999999999986555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.4e-47  Score=406.69  Aligned_cols=438  Identities=18%  Similarity=0.200  Sum_probs=267.0

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      .+++|++++|.+++..|.+|.++++|++|+|++|.++ .+++.+|.++++|++|++++|+++++++.   .+++|++|++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L   97 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL   97 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence            4555555555555555555555555555555555555 33333455555555555555555544432   4555555555


Q ss_pred             ccccCCc-ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCC--cEEECCCCcceeecCCCCcCCcccccEEEecc
Q 040607          123 SSNQLTG-NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL--KIFDSENNQIYAQTESHSLTPKFQLNSIILSH  199 (629)
Q Consensus       123 ~~n~l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  199 (629)
                      ++|.+++ .+|. .++++++|++|++++|.+++    ..+..+++|  +.|++++|.+..                    
T Consensus        98 ~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~--------------------  152 (520)
T 2z7x_B           98 SFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG--------------------  152 (520)
T ss_dssp             CSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT--------------------
T ss_pred             cCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc--------------------
Confidence            5555542 1222 45555555555555555442    123333333  444444443310                    


Q ss_pred             CCCCCcChhhcCCC-CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCC-----
Q 040607          200 GSGVTFPKFLYHQH-DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF-----  273 (629)
Q Consensus       200 ~~~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~-----  273 (629)
                        ....|..+..+. ....+++++|.+.+.++.                        ..+..+++|+.+++++|.     
T Consensus       153 --~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~------------------------~~~~~l~~L~~L~l~~n~~~~~~  206 (520)
T 2z7x_B          153 --EKEDPEGLQDFNTESLHIVFPTNKEFHFILD------------------------VSVKTVANLELSNIKCVLEDNKC  206 (520)
T ss_dssp             --SSCCTTTTTTCCEEEEEEECCSSSCCCCCCC------------------------CCCTTCSEEEECCEEECCSTTTT
T ss_pred             --cccccccccccccceEEEEeccCcchhhhhh------------------------hhhhcccceeecccccccccccc
Confidence              011222222222 122334444444433333                        344455556666666554     


Q ss_pred             --Cccccc-CCCCCCccEEeccCCCCCcccchhhhh--CCCCCcEEEccCcccccccCccc-----CCCCCCcEEEccCC
Q 040607          274 --FQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAM--GCFSLRYLVLSNNKMKGHIFSKK-----INLTNLWRLQLDGN  343 (629)
Q Consensus       274 --~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n  343 (629)
                        +.+..+ +..+++|+.|++++|.+.+..+..+..  ..++|++|++++|++.+..|..+     ..+++|+.+++++|
T Consensus       207 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n  286 (520)
T 2z7x_B          207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD  286 (520)
T ss_dssp             HHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC
T ss_pred             ceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc
Confidence              222222 566777777777777665433222211  14578888888888877777766     77788888888888


Q ss_pred             cCcccCc-hhhhcc---ccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC
Q 040607          344 HFIGEIP-ESLSNC---NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG  419 (629)
Q Consensus       344 ~l~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  419 (629)
                      .+  .+| ..+..+   .+|+.|++++|.+....  ....+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus       287 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  362 (520)
T 2z7x_B          287 VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE  362 (520)
T ss_dssp             CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred             ce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence            77  334 444444   56888888888775432  12567788888888888887777788888888888888888765


Q ss_pred             --CCCCCcCCCccccCCCccCCCeeecccccCCCCCcc-ccccccccceEeccCccccccccccccCCCCCCEEECcCCc
Q 040607          420 --SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPL-RIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK  496 (629)
Q Consensus       420 --~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  496 (629)
                        ..|..+..        +++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..+..+.  ++|++|++++|+
T Consensus       363 l~~~~~~~~~--------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~  432 (520)
T 2z7x_B          363 LSKIAEMTTQ--------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK  432 (520)
T ss_dssp             HHHHHHHHTT--------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred             cccchHHHhh--------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence              33444544        77888888888888763554 477778888888888888776665554  678888888888


Q ss_pred             CCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          497 LTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       497 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      ++ .+|..+..+++|++|++++|+++...+..+..+++++.+++++||+.| +|+
T Consensus       433 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-~c~  485 (520)
T 2z7x_B          433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCP  485 (520)
T ss_dssp             CC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC-CHH
T ss_pred             cc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc-cCC
Confidence            88 667766688888888888888885444446777888888888888887 553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.8e-47  Score=414.53  Aligned_cols=368  Identities=17%  Similarity=0.207  Sum_probs=210.6

Q ss_pred             CcCccCCCcccCCCCCCCeeecccccCCcc-----------------cCccccC--CCCCCCEEEccCcccccccCCccc
Q 040607          101 NNLYGVPPWCLGNMTSLQVLNISSNQLTGN-----------------ISSPPLK--HLKSIQELKLSNNYFQIPISLGPL  161 (629)
Q Consensus       101 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------i~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~  161 (629)
                      |++++ .|..|.++++|++|++++|.+++.                 +|. .++  ++++|++|++++|.+.+.+| ..+
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p-~~l  269 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLP-TFL  269 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCC-TTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccCh-HHH
Confidence            44544 333455555555555555555532                 444 444  55555555555555554444 345


Q ss_pred             CCCCCCcEEECCCCc-ceeecCCCCcCCcccccEEEeccCCCCCcChhhcCC------CCCCEEEccCCCCCCCCCh--h
Q 040607          162 YNHSNLKIFDSENNQ-IYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ------HDLKHVNLSHINLRGEFPN--W  232 (629)
Q Consensus       162 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~------~~L~~L~L~~n~l~~~~~~--~  232 (629)
                      .++++|++|++++|. +.+.                       .+|..+..+      ++|++|++++|+++ .+|.  .
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~-----------------------~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGE-----------------------QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHH-----------------------HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             hcCCCCCEEECcCCCCCccc-----------------------cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            555555555555554 3210                       133333332      55666666666655 4554  3


Q ss_pred             HHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc-CCCCCC-ccEEeccCCCCCcccchhhhh-CCC
Q 040607          233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKS-LSVLDLSKNRLIGKIPERLAM-GCF  309 (629)
Q Consensus       233 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~-L~~L~L~~n~l~~~~~~~~~~-~~~  309 (629)
                      + ..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+..... +..+++ |+.|++++|.++ .+|..+.. .++
T Consensus       326 l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          326 L-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             H-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             h-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence            3 455556666665555553333 55555555555555555542221 444444 555555555554 44443221 012


Q ss_pred             CCcEEEccCcccccccCcccC-------CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCcccc-ccCCC
Q 040607          310 SLRYLVLSNNKMKGHIFSKKI-------NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRW-LGNLS  381 (629)
Q Consensus       310 ~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~  381 (629)
                      +|++|++++|.+.+..|..+.       .+++|+.|++++|.++...+..+..+++|++|++++|.+. .+|.. +... 
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~-  480 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE-  480 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET-
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc-
Confidence            455555555555544444444       4445555555555554333333334445555555554444 22211 1100 


Q ss_pred             CCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcC--CCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607          382 VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN--PFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN  459 (629)
Q Consensus       382 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  459 (629)
                                      ...+.++++|++|++++|.+. .+|..+.  .        +++|+.|++++|++++ +|..+..
T Consensus       481 ----------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~--------l~~L~~L~Ls~N~l~~-ip~~~~~  534 (636)
T 4eco_A          481 ----------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATT--------LPYLVGIDLSYNSFSK-FPTQPLN  534 (636)
T ss_dssp             ----------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTT--------CTTCCEEECCSSCCSS-CCCGGGG
T ss_pred             ----------------cccccccCCccEEECcCCcCC-ccChhhhhcc--------CCCcCEEECCCCCCCC-cChhhhc
Confidence                            001223348888888888887 4555553  3        7888888888888885 7888888


Q ss_pred             ccccceEec------cCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcc
Q 040607          460 LTRIHTLNV------SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWV  529 (629)
Q Consensus       460 l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  529 (629)
                      +++|++|+|      ++|++.+..|..+.++++|++|++++|++. .+|..+.  ++|+.|++++|++.+.....+
T Consensus       535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~  607 (636)
T 4eco_A          535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYV  607 (636)
T ss_dssp             CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTT
T ss_pred             CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhc
Confidence            888999988      567788888999999999999999999995 7787765  799999999999887655433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-46  Score=402.97  Aligned_cols=438  Identities=17%  Similarity=0.166  Sum_probs=305.7

Q ss_pred             CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607           12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV   91 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~   91 (629)
                      ++|++|||++|.+.+..|..++.+      ..|++|++++|.+++..|++|+++++|++|+|++|.++ .+|..   .++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~   90 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSL------SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTV   90 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTC------TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCC
T ss_pred             ccccEEECCCCcccccChhhcccc------ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccC
Confidence            789999999999988888888777      58999999999999999999999999999999999998 88873   899


Q ss_pred             CCcEEEccCCcCccC-CCcccCCCCCCCeeecccccCCcccCccccCCCCCC--CEEEccCccc--ccccCCcccCCCC-
Q 040607           92 HLQELHVDHNNLYGV-PPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSI--QELKLSNNYF--QIPISLGPLYNHS-  165 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-  165 (629)
                      +|++|++++|+++++ .|..|.++++|++|++++|.+++    ..+..+++|  ++|++++|.+  .+..+ ..+..+. 
T Consensus        91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~-~~l~~l~~  165 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNT  165 (520)
T ss_dssp             CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCT-TTTTTCCE
T ss_pred             CccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccccccc-cccccccc
Confidence            999999999999885 46799999999999999999983    267788888  9999999998  53333 3444444 


Q ss_pred             CCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCC-------CCCCCChhHHhcCC
Q 040607          166 NLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN-------LRGEFPNWLSENNT  238 (629)
Q Consensus       166 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~-------l~~~~~~~~~~~~~  238 (629)
                      +...+++++|.+....                       .+..+..+++|+.+++++|.       +.+.+| . +..++
T Consensus       166 ~~l~l~l~~n~~~~~~-----------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~  220 (520)
T 2z7x_B          166 ESLHIVFPTNKEFHFI-----------------------LDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K-LQTNP  220 (520)
T ss_dssp             EEEEEECCSSSCCCCC-----------------------CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G-GGGCT
T ss_pred             ceEEEEeccCcchhhh-----------------------hhhhhhcccceeeccccccccccccceeecchh-h-hcccc
Confidence            2334566666553321                       12346678889999999987       443333 2 25677


Q ss_pred             CCcEEeccCccccccCCCCc---ccCCCccEEEccCCCCccccc--C-----CCCCCccEEeccCCCCCcccc-hhhhhC
Q 040607          239 KLQTLVQVNNYLSGIFQMPK---HARRHLTYLDVSDNFFQVHIP--V-----GNMKSLSVLDLSKNRLIGKIP-ERLAMG  307 (629)
Q Consensus       239 ~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~L~~n~~~~~~~--~-----~~~~~L~~L~L~~n~l~~~~~-~~~~~~  307 (629)
                      +|+.|++++|.+++.....+   ...++|++|++++|.+.+..|  +     ..+++|+.+++++|.+  .+| ..++..
T Consensus       221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~  298 (520)
T 2z7x_B          221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI  298 (520)
T ss_dssp             TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred             chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc
Confidence            88888887776654211100   012467777777776664444  2     5566666666666665  444 222221


Q ss_pred             --CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcc
Q 040607          308 --CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED  385 (629)
Q Consensus       308 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  385 (629)
                        ..+|++|++++|.+....  .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..            
T Consensus       299 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------------  364 (520)
T 2z7x_B          299 FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS------------  364 (520)
T ss_dssp             HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH------------
T ss_pred             cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc------------
Confidence              145666666666654321  1134555666666666555555555555555555555555554210            


Q ss_pred             ccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC-CcCCCccccCCCccCCCeeecccccCCCCCccccccccccc
Q 040607          386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIH  464 (629)
Q Consensus       386 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  464 (629)
                                ..|..+..+++|++|++++|.+.+.+|. .+..        +++|+.|++++|.+++..|..+.  ++|+
T Consensus       365 ----------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~  424 (520)
T 2z7x_B          365 ----------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW--------TKSLLSLNMSSNILTDTIFRCLP--PRIK  424 (520)
T ss_dssp             ----------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------CTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred             ----------cchHHHhhCCCCCEEECCCCcCCcccccchhcc--------CccCCEEECcCCCCCcchhhhhc--ccCC
Confidence                      2234455666666666666666553333 2333        67777788888877655555443  7899


Q ss_pred             eEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          465 TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       465 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      +|++++|+++.+ |..+..+++|++|++++|+++...+..|..+++|+.|++++|++.|.++
T Consensus       425 ~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          425 VLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             EEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999999854 5555589999999999999995443448899999999999999998877

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.4e-44  Score=398.82  Aligned_cols=489  Identities=18%  Similarity=0.158  Sum_probs=388.8

Q ss_pred             CCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCC
Q 040607           12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFV   91 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~   91 (629)
                      +++++|||++|.++...+..|+.+      ..|++|+|++|.|++..+++|+++++|++|+|++|+++ .+|++.|.+++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l------~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~  124 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSF------PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS  124 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCT
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCC------CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCC
Confidence            379999999999998888888887      58999999999999988889999999999999999998 88887899999


Q ss_pred             CCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCC----C
Q 040607           92 HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSN----L  167 (629)
Q Consensus        92 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~----L  167 (629)
                      +|++|++++|+++++++..|.++++|++|++++|.+++.-.+..++.+++|++|++++|.+++ +....+..+.+    .
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhh
Confidence            999999999999999998999999999999999999732223378999999999999999984 33345554433    3


Q ss_pred             cEEECCCCcceeecCCCCcCCcccccEEEeccCCCC--CcChhhcCCCCCCEEEcc------------------------
Q 040607          168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV--TFPKFLYHQHDLKHVNLS------------------------  221 (629)
Q Consensus       168 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~L~------------------------  221 (629)
                      ..++++.|.+.......  .....++.+.+.++...  ..+..+..+..++...+.                        
T Consensus       204 ~~~~ls~n~l~~i~~~~--~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          204 LSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CEEECTTCCCCEECTTT--TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhcccCcccccCccc--ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence            47889999887654422  22234455555533221  122333444444433332                        


Q ss_pred             ------CCCCCC---CCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEecc
Q 040607          222 ------HINLRG---EFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS  292 (629)
Q Consensus       222 ------~n~l~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~  292 (629)
                            .+....   ..+.. +.....++.+.+.++.+....  .+.....++.|++.+|.+.... ...+..|+.+++.
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~l~~L~~l~l~  357 (635)
T 4g8a_A          282 TIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFT  357 (635)
T ss_dssp             EEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCC-CCBCTTCCEEEEE
T ss_pred             hhhhhhhhhhcccccchhhh-hhhhccccccccccccccccc--ccccchhhhhhhcccccccCcC-cccchhhhhcccc
Confidence                  211110   11111 245567888888888777654  3556778999999999876443 3567889999999


Q ss_pred             CCCCCcccchhhhhCCCCCcEEEccCccccc--ccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccC
Q 040607          293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKG--HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS  370 (629)
Q Consensus       293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  370 (629)
                      .|.... .+...  .+++|+++++++|.+..  ..+..+..+.+|+.+++..+.... .+..+..+++|+.++++++...
T Consensus       358 ~n~~~~-~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          358 SNKGGN-AFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             SCCSCC-BCCCC--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEE
T ss_pred             cccCCC-Ccccc--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccc
Confidence            998763 33222  48899999999998753  344556678899999999998764 3456788999999999988765


Q ss_pred             CCc-cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcC-CCCCCCCcCCCccccCCCccCCCeeeccccc
Q 040607          371 GKI-PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNI-FGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK  448 (629)
Q Consensus       371 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  448 (629)
                      ... +..+..+..++.++++.|.+.+..+..+..+++|+.|++++|+. .+..|..+..        +++|+.|+|++|+
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQCQ  505 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTSC
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh--------ccccCEEECCCCc
Confidence            544 35678899999999999999999999999999999999999985 4456777766        8999999999999


Q ss_pred             CCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCC-CCCCEEEcccCcCcccCC
Q 040607          449 LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL-NALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       449 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~  526 (629)
                      +++..|..|.++++|++|+|++|+|+++++..|.++++|++|++++|+|++..|+.|..+ ++|+.|++++|++.|.|.
T Consensus       506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            998889999999999999999999999999999999999999999999999999999988 689999999999999887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-44  Score=401.79  Aligned_cols=447  Identities=16%  Similarity=0.126  Sum_probs=270.9

Q ss_pred             CCCcEEEcCCCCceeecchhhhhcCccchhcccceeec-cCcccCccchhhh----------------------------
Q 040607           12 TNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAM-DGTALDKNFLQVI----------------------------   62 (629)
Q Consensus        12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l-~~~~~~~~~~~~l----------------------------   62 (629)
                      .+++.|+|+++.+.|.+|..++++      ..|++|+| ++|.+.|..|...                            
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L------~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~  396 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQL------TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ  396 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGC------TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCG
T ss_pred             CCEEEEECccCCCCCcCchHHhcc------ccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCc
Confidence            689999999999999999999888      58999999 8887765522110                            


Q ss_pred             -----------------------cCCCCCCEEEccC--CcCCCccCccccCCCCCCcEEEccCCcCcc------------
Q 040607           63 -----------------------KSMTSLKLLSLSN--SRLNGTILDQGLCEFVHLQELHVDHNNLYG------------  105 (629)
Q Consensus        63 -----------------------~~l~~L~~L~Ls~--n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~------------  105 (629)
                                             .....++.+.+..  |.+++ +|. .|.++++|++|+|++|++++            
T Consensus       397 ~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~  474 (876)
T 4ecn_A          397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANS  474 (876)
T ss_dssp             GGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             chhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccc
Confidence                                   1112233333333  66774 776 78889999999999999888            


Q ss_pred             -----CCCcccC--CCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcc-ccc-ccCC------cccCCCCCCcEE
Q 040607          106 -----VPPWCLG--NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNY-FQI-PISL------GPLYNHSNLKIF  170 (629)
Q Consensus       106 -----~~~~~~~--~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~-l~~-~~~~------~~~~~l~~L~~L  170 (629)
                           ..|..+.  ++++|++|++++|.+.+.+|. .++++++|++|++++|. +++ .+|.      ..+..+++|+.|
T Consensus       475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred             ccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence                 1444655  899999999999988878885 88999999999999997 765 4442      134456689999


Q ss_pred             ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCC-CcEEeccCcc
Q 040607          171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTK-LQTLVQVNNY  249 (629)
Q Consensus       171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~l~~n~  249 (629)
                      ++++|.+...+....+..+.+|+.|+++++....+| .+..+++|++|++++|++. .+|..+ ..+++ |+.|++++|.
T Consensus       554 ~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             ECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSC
T ss_pred             EeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCC
Confidence            998888762211012333334444444433333444 3444444445555544444 444433 23333 4444444444


Q ss_pred             ccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhh---h-hCCCCCcEEEccCccccccc
Q 040607          250 LSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERL---A-MGCFSLRYLVLSNNKMKGHI  325 (629)
Q Consensus       250 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~-~~~~~L~~L~L~~n~l~~~~  325 (629)
                      ++.+ +..+.....                    ++|+.|++++|.+.+.+|...   . ...++|++|++++|.+....
T Consensus       631 L~~l-p~~~~~~~~--------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp  689 (876)
T 4ecn_A          631 LKYI-PNIFNAKSV--------------------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP  689 (876)
T ss_dssp             CCSC-CSCCCTTCS--------------------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred             CCcC-chhhhcccc--------------------CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence            4422 222222221                    224555555555443332111   0 01234555555555555322


Q ss_pred             CcccCCCCCCcEEEccCCcCcccCchh-hh-------ccccCCceeccccccCCCcccccc--CCCCCccccCCCCcccC
Q 040607          326 FSKKINLTNLWRLQLDGNHFIGEIPES-LS-------NCNLFGGLYLSDNHLSGKIPRWLG--NLSVSEDVIMPNNHLEG  395 (629)
Q Consensus       326 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~-------~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~  395 (629)
                      +..+..+++|+.|++++|.++ .+|.. +.       .+++|+.|++++|.+. .+|..+.  .+++|+.|++++|.+.+
T Consensus       690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence            222334555555555555554 22222 11       2336777777777776 5555555  67777777777777775


Q ss_pred             CCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccc
Q 040607          396 PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTG  475 (629)
Q Consensus       396 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  475 (629)
                       +|..+..+++|+.|++++|+                          ++++|.+.+.+|..+..+++|+.|+|++|+++ 
T Consensus       768 -lp~~l~~L~~L~~L~Ls~N~--------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-  819 (876)
T 4ecn_A          768 -FPTQPLNSSQLKAFGIRHQR--------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-  819 (876)
T ss_dssp             -CCCGGGGCTTCCEEECCCCB--------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-
T ss_pred             -cchhhhcCCCCCEEECCCCC--------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-
Confidence             56667777788888887763                          34556666677777777777777777777774 


Q ss_pred             cccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 040607          476 LILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG  523 (629)
Q Consensus       476 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  523 (629)
                      .+|..+.  ++|+.|++++|++....+..+.....+..+.+.+|++..
T Consensus       820 ~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          820 KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            3444443  577788888887776666665555555666666666553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-45  Score=404.64  Aligned_cols=474  Identities=15%  Similarity=0.169  Sum_probs=306.8

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCC------C------ccCccccCCCCCCcEEEccCCcCccCCCcc
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLN------G------TILDQGLCEFVHLQELHVDHNNLYGVPPWC  110 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~  110 (629)
                      .++.|+|+++.+.|.+|.+++++++|++|+|++|.+.      +      .+|...   +..|+ +++++|.+.+.++..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence            4557777777777777777777777777777777541      1      222211   23344 555555554444433


Q ss_pred             cCC-CCCCCeeecccccCCcccCccccCCCCCCCEEEcc--CcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcC
Q 040607          111 LGN-MTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS--NNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLT  187 (629)
Q Consensus       111 ~~~-l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  187 (629)
                      +.. +..+..+++....+.       ......++.+.+.  +|.+++ +|. .+.++++|++|++++|.+.+......+.
T Consensus       158 ~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  228 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWE  228 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred             HHHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCcccccccccccc
Confidence            331 111222222211111       0001112222221  344443 442 3555555555555555554310000000


Q ss_pred             CcccccEEEeccCCCCCcChhhc--CCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcc-ccc-cCCCCcccC--
Q 040607          188 PKFQLNSIILSHGSGVTFPKFLY--HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNY-LSG-IFQMPKHAR--  261 (629)
Q Consensus       188 ~~~~L~~L~l~~~~~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~~--  261 (629)
                      +..       .....+.+|..+.  .+++|++|++++|++.+.+|..+ ..+++|+.|++++|. +++ ..+..+..+  
T Consensus       229 ~~~-------~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~  300 (636)
T 4eco_A          229 NEN-------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALAD  300 (636)
T ss_dssp             CTT-------SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHH
T ss_pred             ccc-------cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhc
Confidence            000       0000001445555  56666666666666665666554 456666666666665 554 333333333  


Q ss_pred             ----CCccEEEccCCCCccccc---CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCC
Q 040607          262 ----RHLTYLDVSDNFFQVHIP---VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTN  334 (629)
Q Consensus       262 ----~~L~~L~L~~n~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  334 (629)
                          ++|++|++++|.+.....   ++.+++|+.|++++|.+.|.+|  .+..+++|++|++++|++. .+|..+..+++
T Consensus       301 ~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             SGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred             cccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence                677777777777764433   6677778888888888777777  3334778888888888877 56667777877


Q ss_pred             -CcEEEccCCcCcccCchhhhccc--cCCceeccccccCCCcccccc-------CCCCCccccCCCCcccCCCCccccCC
Q 040607          335 -LWRLQLDGNHFIGEIPESLSNCN--LFGGLYLSDNHLSGKIPRWLG-------NLSVSEDVIMPNNHLEGPIPMEFCQL  404 (629)
Q Consensus       335 -L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l  404 (629)
                       |+.|++++|.++ .+|..+...+  +|+.|++++|.+.+..|..+.       .+++|+.|++++|.+....+..+..+
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l  456 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG  456 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred             cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence             888888888877 5666666544  788888888888877777777       67789999999999986555566778


Q ss_pred             CcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccc--cccccceEeccCcccccccccccc
Q 040607          405 NFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG--NLTRIHTLNVSHNKLTGLILSTFS  482 (629)
Q Consensus       405 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~  482 (629)
                      ++|++|++++|.+....+..+... ......+++|+.|++++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+.
T Consensus       457 ~~L~~L~Ls~N~l~~i~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~  533 (636)
T 4eco_A          457 SPLSSINLMGNMLTEIPKNSLKDE-NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL  533 (636)
T ss_dssp             CCCSEEECCSSCCSBCCSSSSEET-TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred             CCCCEEECCCCCCCCcCHHHhccc-cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence            999999999999974443333220 000112349999999999999 7888876  99999999999999998 677888


Q ss_pred             CCCCCCEEEC------cCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          483 NLKQTESLDL------SYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       483 ~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      ++++|++|++      ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.  ++++.+++++||+.|
T Consensus       534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            9999999999      56788889999999999999999999999 57776544  799999999999977

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-44  Score=389.04  Aligned_cols=454  Identities=20%  Similarity=0.220  Sum_probs=281.8

Q ss_pred             ceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccc
Q 040607           45 GFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS  124 (629)
Q Consensus        45 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  124 (629)
                      ++++++++.+++ +|..+.  ++|++|++++|.++ .+++.+|.++++|++|++++|+++++.|++|.++++|++|++++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            577777777774 555443  67777777777777 56555777777777777777777777777777777777777777


Q ss_pred             ccCCcccCccccCCCCCCCEEEccCcccccccC-CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607          125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPIS-LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV  203 (629)
Q Consensus       125 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  203 (629)
                      |.++ .+|..   .+++|++|++++|.+++ ++ ...|.++++|++|++++|.+...    .+....+|           
T Consensus       110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L-----------  169 (562)
T 3a79_B          110 NRLQ-NISCC---PMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHL-----------  169 (562)
T ss_dssp             SCCC-EECSC---CCTTCSEEECCSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTS-----------
T ss_pred             CcCC-ccCcc---ccccCCEEECCCCCccc-cCchHhhcccCcccEEecCCCccccC----chhhhhhc-----------
Confidence            7777 67752   67777777777777763 22 24677777777777777766431    11111111           


Q ss_pred             CcChhhcCCCCCCEEEccCCCC--CCCCChhHHhcCC-CCcEEeccCcccccc-CCCCcccCCCccEEEccCCCCc----
Q 040607          204 TFPKFLYHQHDLKHVNLSHINL--RGEFPNWLSENNT-KLQTLVQVNNYLSGI-FQMPKHARRHLTYLDVSDNFFQ----  275 (629)
Q Consensus       204 ~~~~~l~~~~~L~~L~L~~n~l--~~~~~~~~~~~~~-~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~----  275 (629)
                                +|++|++++|++  .+..|..+ ..+. ..-.+++++|.+... ....+..+++|+.+++++|...    
T Consensus       170 ----------~L~~L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l  238 (562)
T 3a79_B          170 ----------HLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL  238 (562)
T ss_dssp             ----------CEEEEEEEESSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH
T ss_pred             ----------eeeEEEeecccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH
Confidence                      124455555444  33333332 1111 011233344433321 1122334556666666665411    


Q ss_pred             -ccc-cCCCCCCccEEeccCCCCCcc----cchhhhhCCCCCcEEEccCcccccccCccc-----CCCCCCcEEEccCCc
Q 040607          276 -VHI-PVGNMKSLSVLDLSKNRLIGK----IPERLAMGCFSLRYLVLSNNKMKGHIFSKK-----INLTNLWRLQLDGNH  344 (629)
Q Consensus       276 -~~~-~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~  344 (629)
                       +.. .+..+++|+.++++++.+.+.    ++....  .++|++|++++|.+++.+|..+     ..++.|+.+++..+.
T Consensus       239 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~  316 (562)
T 3a79_B          239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV  316 (562)
T ss_dssp             HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred             HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence             111 145566666676666655432    122221  3477777777777776666655     455555555666555


Q ss_pred             CcccCc-hhhhc---cccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCC
Q 040607          345 FIGEIP-ESLSN---CNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS  420 (629)
Q Consensus       345 l~~~~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  420 (629)
                      +  .+| ..+..   ..+|+.|++++|.+....  ....+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus       317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  392 (562)
T 3a79_B          317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF  392 (562)
T ss_dssp             C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred             e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence            5  223 22222   256777788777765322  125667778888888887777777777778888888888777653


Q ss_pred             C--CCCcCCCccccCCCccCCCeeecccccCCCCCc-cccccccccceEeccCccccccccccccCCCCCCEEECcCCcC
Q 040607          421 L--PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP-LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL  497 (629)
Q Consensus       421 ~--~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  497 (629)
                      .  |..+..        +++|+.|++++|.+++.+| ..+..+++|++|++++|++++..+..+.  ++|++|++++|++
T Consensus       393 ~~~~~~~~~--------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l  462 (562)
T 3a79_B          393 FKVALMTKN--------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI  462 (562)
T ss_dssp             THHHHTTTT--------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred             ccchhhhcC--------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence            2  234444        6778888888888775343 3467777888888888877765554443  6778888888887


Q ss_pred             CCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          498 TGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       498 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      + .+|..+..+++|+.|++++|+++...+..+..+++++.+++++|||.| +|+
T Consensus       463 ~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c-~c~  514 (562)
T 3a79_B          463 M-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-TCP  514 (562)
T ss_dssp             C-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC-CHH
T ss_pred             c-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC-Ccc
Confidence            7 556555577788888888888875444446777777778888888877 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-43  Score=394.33  Aligned_cols=462  Identities=19%  Similarity=0.177  Sum_probs=275.2

Q ss_pred             cccceeeccCcccCccchhhhcCCCCCCEEEc-cCCcCCCccCccccCCCCCCc-----EEEc----------cCCcCc-
Q 040607           42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSL-SNSRLNGTILDQGLCEFVHLQ-----ELHV----------DHNNLY-  104 (629)
Q Consensus        42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~i~~~~~~~l~~L~-----~L~L----------~~n~i~-  104 (629)
                      ..+..|+|+++.+.|.+|++++++++|++|+| ++|.+.|..+.........+.     .+..          ....+. 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            35779999999999999999999999999999 888776543321100000000     0000          000000 


Q ss_pred             ----------cCCCcccCCCCCCCeeeccc--ccCCcccCccccCCCCCCCEEEccCccccc-----------------c
Q 040607          105 ----------GVPPWCLGNMTSLQVLNISS--NQLTGNISSPPLKHLKSIQELKLSNNYFQI-----------------P  155 (629)
Q Consensus       105 ----------~~~~~~~~~l~~L~~L~L~~--n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~-----------------~  155 (629)
                                ...+........++.+.+..  |.+++ +|. .++++++|++|++++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                      00000111122233333332  45553 554 45555555555555555553                 1


Q ss_pred             cCCcccC--CCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCC-CCC-CCCh
Q 040607          156 ISLGPLY--NHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN-LRG-EFPN  231 (629)
Q Consensus       156 ~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~-l~~-~~~~  231 (629)
                      +|. .+.  ++++|+.|++++|.+.                        +.+|..+..+++|++|++++|+ +++ .+|.
T Consensus       481 iP~-~l~f~~L~~L~~L~Ls~N~l~------------------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          481 ENE-ELSWSNLKDLTDVELYNCPNM------------------------TQLPDFLYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             TTS-CCCGGGCTTCCEEEEESCTTC------------------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             CCh-hhhhccCCCCCEEECcCCCCC------------------------ccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence            232 222  4444444444444332                        2344445555555555555554 544 4444


Q ss_pred             hHH------hcCCCCcEEeccCccccccCCC--CcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchh
Q 040607          232 WLS------ENNTKLQTLVQVNNYLSGIFQM--PKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPER  303 (629)
Q Consensus       232 ~~~------~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  303 (629)
                      .+.      ..+++|+.|++++|.++. .+.  .+..+++|+.|++++|.+.....+..+++|+.|++++|.+. .+|..
T Consensus       536 ~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~  613 (876)
T 4ecn_A          536 DWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPED  613 (876)
T ss_dssp             HHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTT
T ss_pred             HHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHH
Confidence            431      112355555555555552 223  45555556666666655553333555566666666666665 55554


Q ss_pred             hhhCCCC-CcEEEccCcccccccCcccCCCCC--CcEEEccCCcCcccCchhh---h--ccccCCceeccccccCCCccc
Q 040607          304 LAMGCFS-LRYLVLSNNKMKGHIFSKKINLTN--LWRLQLDGNHFIGEIPESL---S--NCNLFGGLYLSDNHLSGKIPR  375 (629)
Q Consensus       304 ~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~~~  375 (629)
                      +.. +++ |++|++++|.++ .+|..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.+....+.
T Consensus       614 l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~  691 (876)
T 4ecn_A          614 FCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE  691 (876)
T ss_dssp             SCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH
T ss_pred             Hhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH
Confidence            433 455 666666666665 44455544433  6666666666655433211   1  223566666666666633223


Q ss_pred             cccCCCCCccccCCCCcccCCCCcccc-------CCCcccEEEcccCcCCCCCCCCcC--CCccccCCCccCCCeeeccc
Q 040607          376 WLGNLSVSEDVIMPNNHLEGPIPMEFC-------QLNFLQILDISKKNIFGSLPSCFN--PFSIKQGKPLNSMSGLDLSC  446 (629)
Q Consensus       376 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~--~~~~~~~~~~~~L~~L~L~~  446 (629)
                      .+..+++|+.|++++|.+....+..+.       ++++|+.|++++|++. .+|..+.  .        +++|+.|+|++
T Consensus       692 ~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~--------l~~L~~L~Ls~  762 (876)
T 4ecn_A          692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT--------LPYLSNMDVSY  762 (876)
T ss_dssp             HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT--------CTTCCEEECCS
T ss_pred             HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc--------CCCcCEEEeCC
Confidence            334566666666666666632222222       3348899999998887 5565554  4        78899999999


Q ss_pred             ccCCCCCccccccccccceEeccC------ccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCc
Q 040607          447 NKLTGEIPLRIGNLTRIHTLNVSH------NKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK  520 (629)
Q Consensus       447 n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  520 (629)
                      |.+++ +|..+..+++|+.|+|++      |.+.+..|..|.++++|+.|++++|++ +.+|..+.  ++|+.||+++|+
T Consensus       763 N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             SCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred             CCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence            99985 788888899999999976      788888999999999999999999999 47888765  699999999999


Q ss_pred             CcccCCCccccccccCCCCCCCCCCCC
Q 040607          521 LSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       521 l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      +....+..+..........+.+|++.+
T Consensus       839 l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          839 NISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             TCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             CCccChHHccccccchheeecCCCccc
Confidence            998777766666666677778887765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1e-44  Score=392.64  Aligned_cols=462  Identities=15%  Similarity=0.115  Sum_probs=301.6

Q ss_pred             CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607           11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF   90 (629)
Q Consensus        11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l   90 (629)
                      +...+++|++++.++. +|..+        +..+++|++++|.+++..+.+|+++++|++|+|++|.++ .+++++|.++
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~--------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l   99 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDL--------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFN   99 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTS--------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTC
T ss_pred             cCCCcEEEcCCCCCcc-CCCCC--------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCC
Confidence            4455899999999875 55532        368899999999999988899999999999999999998 6766689999


Q ss_pred             CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCc-cccCCCCCCCEEEccCcccccccCCcccCCCCCC--
Q 040607           91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISS-PPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL--  167 (629)
Q Consensus        91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--  167 (629)
                      ++|++|++++|+++.+++.   .+++|++|++++|.++ .++. ..++++++|++|++++|.++. .   .+..+++|  
T Consensus       100 ~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L  171 (562)
T 3a79_B          100 QDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHL  171 (562)
T ss_dssp             TTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCE
T ss_pred             CCCCEEECCCCcCCccCcc---ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-C---chhhhhhcee
Confidence            9999999999999988764   8999999999999998 5542 489999999999999999873 3   34445555  


Q ss_pred             cEEECCCCcc--eeecCCCCcCCcc-cccEEEeccC-CCCCcC-hhhcCCCCCCEEEccCCCCCC----CCChhHHhcCC
Q 040607          168 KIFDSENNQI--YAQTESHSLTPKF-QLNSIILSHG-SGVTFP-KFLYHQHDLKHVNLSHINLRG----EFPNWLSENNT  238 (629)
Q Consensus       168 ~~L~l~~n~~--~~~~~~~~~~~~~-~L~~L~l~~~-~~~~~~-~~l~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~  238 (629)
                      +.|++++|.+  ..... ..+..+. ..-.++++.+ ....++ ..+..+++|+.+++++|+...    ..... +..++
T Consensus       172 ~~L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~l~  249 (562)
T 3a79_B          172 SCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTRGP  249 (562)
T ss_dssp             EEEEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHSCS
T ss_pred             eEEEeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-HhccC
Confidence            9999999987  33222 1111110 0112223322 112222 223344555555555553110    00111 13344


Q ss_pred             CCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhh----hCCCCCcEE
Q 040607          239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLA----MGCFSLRYL  314 (629)
Q Consensus       239 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~----~~~~~L~~L  314 (629)
                      .++.+++.++.+...                   .+....+....++|++|++++|.+.+.+|..++    ..++.|+.+
T Consensus       250 ~L~~L~L~~~~l~~~-------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~  310 (562)
T 3a79_B          250 TLLNVTLQHIETTWK-------------------CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE  310 (562)
T ss_dssp             SCEEEEEEEEEECHH-------------------HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred             cceEEEecCCcCcHH-------------------HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence            444444443332211                   111111111223566666666665555555442    112233333


Q ss_pred             EccCcccccccC-cccC---CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCC
Q 040607          315 VLSNNKMKGHIF-SKKI---NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN  390 (629)
Q Consensus       315 ~L~~n~l~~~~~-~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  390 (629)
                      ++..+.+  ..| ..+.   ...+|+.|++++|.+....  ....+++|++|++++|.+.+..|..+..+++|+.|++++
T Consensus       311 ~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  386 (562)
T 3a79_B          311 HVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR  386 (562)
T ss_dssp             EEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred             hccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence            3333332  111 1111   1245666666666654221  124566677777777776666666667777777777777


Q ss_pred             CcccCCC--CccccCCCcccEEEcccCcCCCCCCC-CcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEe
Q 040607          391 NHLEGPI--PMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN  467 (629)
Q Consensus       391 n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  467 (629)
                      |.+++..  |..+..+++|++|++++|.+.+.+|. .+..        +++|+.|++++|.+++..|..+.  ++|++|+
T Consensus       387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~  456 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--------AESILVLNLSSNMLTGSVFRCLP--PKVKVLD  456 (562)
T ss_dssp             SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC--------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred             CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC--------cccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence            7776532  35577888888888888888774443 3444        78899999999988765555443  7999999


Q ss_pred             ccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       468 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |++|+++.+++. +.++++|++|++++|+++...+..+..+++|+.|++++|++.|.++
T Consensus       457 L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          457 LHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCSSCCCCCCTT-TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCcCcccChh-hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            999999965544 4489999999999999995444448999999999999999999887

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-39  Score=343.89  Aligned_cols=384  Identities=18%  Similarity=0.176  Sum_probs=243.8

Q ss_pred             eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCc-cCCCcccCCCCCCCeeeccc
Q 040607           46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLY-GVPPWCLGNMTSLQVLNISS  124 (629)
Q Consensus        46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~  124 (629)
                      .++.+++.++. +|. +  .++|++|+|++|.++ .+++..|.++++|++|++++|.+. .+++..|.++++|++|++++
T Consensus        14 ~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCSS-CCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCccc-CCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666666553 343 2  256677777777666 443446666777777777776664 34455666667777777777


Q ss_pred             ccCCcccCccccCCCCCCCEEEccCccccccc-CCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607          125 NQLTGNISSPPLKHLKSIQELKLSNNYFQIPI-SLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV  203 (629)
Q Consensus       125 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  203 (629)
                      |.++ .+++..++++++|++|++++|.+++.. ....+..+++|++|++++|.+                          
T Consensus        89 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l--------------------------  141 (455)
T 3v47_A           89 NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI--------------------------  141 (455)
T ss_dssp             CTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC--------------------------
T ss_pred             CccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc--------------------------
Confidence            6666 333336666666666666666665311 112244555555555555544                          


Q ss_pred             CcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccC--CCccEEEccCCCCccccc--
Q 040607          204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHAR--RHLTYLDVSDNFFQVHIP--  279 (629)
Q Consensus       204 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~--  279 (629)
                                            .+..|..++..+++|++|++++|.+.+..+..+..+  .+++.+++++|.+....+  
T Consensus       142 ----------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~  199 (455)
T 3v47_A          142 ----------------------KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW  199 (455)
T ss_dssp             ----------------------CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred             ----------------------CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence                                  333333323344444444444444444433333332  345555555555443322  


Q ss_pred             --------CCCCCCccEEeccCCCCCcccchhhhhC--CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccC
Q 040607          280 --------VGNMKSLSVLDLSKNRLIGKIPERLAMG--CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI  349 (629)
Q Consensus       280 --------~~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  349 (629)
                              +..+++|+.|++++|.+.+..+..+...  ..+|+.|++++|...+..              +..+.+....
T Consensus       200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~  265 (455)
T 3v47_A          200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPD  265 (455)
T ss_dssp             TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCC
T ss_pred             ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCc
Confidence                    2244667777777777765555554431  145555555555433210              0111111111


Q ss_pred             chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCc
Q 040607          350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFS  429 (629)
Q Consensus       350 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  429 (629)
                      +..+..                      ...++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..|..+..  
T Consensus       266 ~~~~~~----------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--  321 (455)
T 3v47_A          266 NFTFKG----------------------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG--  321 (455)
T ss_dssp             TTTTGG----------------------GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--
T ss_pred             cccccc----------------------ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC--
Confidence            111111                      01256777777777777777777888888888888888888877777766  


Q ss_pred             cccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC
Q 040607          430 IKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN  509 (629)
Q Consensus       430 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  509 (629)
                            +++|+.|++++|.+++..+..+..+++|++|+|++|++++..+..|.++++|++|++++|++++..+..|..++
T Consensus       322 ------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  395 (455)
T 3v47_A          322 ------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT  395 (455)
T ss_dssp             ------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence                  78899999999999877788899999999999999999999899999999999999999999987777889999


Q ss_pred             CCCEEEcccCcCcccCCC
Q 040607          510 ALAVFSVAHNKLSGKTPD  527 (629)
Q Consensus       510 ~L~~L~l~~N~l~~~~~~  527 (629)
                      +|+.|++++|+++|.+|.
T Consensus       396 ~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          396 SLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCCEEECCSSCBCCCTTT
T ss_pred             cccEEEccCCCcccCCCc
Confidence            999999999999999984

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.2e-39  Score=338.22  Aligned_cols=381  Identities=20%  Similarity=0.201  Sum_probs=281.5

Q ss_pred             CeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEe
Q 040607          118 QVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIIL  197 (629)
Q Consensus       118 ~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  197 (629)
                      +.++.+++.++ .+|.  +  .++|++|++++|.+++ +....+.++++|++|++++|.+....+               
T Consensus        13 ~~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~---------------   71 (455)
T 3v47_A           13 YNAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIR---------------   71 (455)
T ss_dssp             TEEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEEC---------------
T ss_pred             cccCcCCCCcc-cCCC--C--CCccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceEC---------------
Confidence            45777777777 7764  2  2788899998888873 444568888888888888886642211               


Q ss_pred             ccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc--CCCCcccCCCccEEEccCCCCc
Q 040607          198 SHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI--FQMPKHARRHLTYLDVSDNFFQ  275 (629)
Q Consensus       198 ~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~L~~n~~~  275 (629)
                              +..+..+++|++|++++|++.+..|..+ ..+++|++|++++|.+++.  ....+..+++|++|++++|.+.
T Consensus        72 --------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  142 (455)
T 3v47_A           72 --------NNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK  142 (455)
T ss_dssp             --------TTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred             --------cccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence                    3446677788888888888875556654 6777788888877777653  2334667777777777777776


Q ss_pred             cccc---CCCCCCccEEeccCCCCCcccchhhhh-CCCCCcEEEccCcccccccCccc--------CCCCCCcEEEccCC
Q 040607          276 VHIP---VGNMKSLSVLDLSKNRLIGKIPERLAM-GCFSLRYLVLSNNKMKGHIFSKK--------INLTNLWRLQLDGN  343 (629)
Q Consensus       276 ~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~n  343 (629)
                      +..+   +..+++|++|++++|.+.+..+..+.. ...+++.|++++|.+.+..+..+        ..+++|+.|++++|
T Consensus       143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred             ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence            6544   556777777777777776444443332 12567777777777665443322        24466777777777


Q ss_pred             cCcccCchhhhcc---ccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcccc--CCCcccEEEcccCcCC
Q 040607          344 HFIGEIPESLSNC---NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC--QLNFLQILDISKKNIF  418 (629)
Q Consensus       344 ~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~  418 (629)
                      .+++..|..+...   ++++.|++++|...+...              ..+.+.+..+..+.  ..++|++|++++|.+.
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  288 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF  288 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred             cccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCcccc
Confidence            7766666555543   566667776665442211              11111112222222  2368999999999999


Q ss_pred             CCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607          419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT  498 (629)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  498 (629)
                      +..|..+..        +++|+.|++++|.+++..|..|..+++|++|+|++|.+++..+..|.++++|++|++++|+++
T Consensus       289 ~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          289 ALLKSVFSH--------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR  360 (455)
T ss_dssp             EECTTTTTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred             ccchhhccc--------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence            998988877        899999999999999888889999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          499 GKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       499 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      +..|..|..+++|++|++++|++++..+..+..+++++.+++++||+.| +|+
T Consensus       361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~  412 (455)
T 3v47_A          361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCP  412 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-CTT
T ss_pred             ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc-CCC
Confidence            8889999999999999999999998888878899999999999999999 775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-38  Score=332.20  Aligned_cols=268  Identities=22%  Similarity=0.209  Sum_probs=128.5

Q ss_pred             CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCC-------------CEEEccCCc
Q 040607           11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSL-------------KLLSLSNSR   77 (629)
Q Consensus        11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~Ls~n~   77 (629)
                      .++|++|++++|.+ +.+|.+++++      ..|++|++++|.+.+.+|..++++++|             ++|++++|.
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L------~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENV------KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             cccchhhhcccCch-hhCChhHhcc------cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            56777777777777 6677766666      466777777777777777777776654             666666666


Q ss_pred             CCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccC
Q 040607           78 LNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPIS  157 (629)
Q Consensus        78 l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~  157 (629)
                      ++ .+|.  +  .++|++|++++|.+++++. .   .++|++|++++|.++ .++.  +  .++|++|++++|.+++ ++
T Consensus        83 l~-~lp~--~--~~~L~~L~l~~n~l~~lp~-~---~~~L~~L~l~~n~l~-~l~~--~--~~~L~~L~L~~n~l~~-lp  147 (454)
T 1jl5_A           83 LS-SLPE--L--PPHLESLVASCNSLTELPE-L---PQSLKSLLVDNNNLK-ALSD--L--PPLLEYLGVSNNQLEK-LP  147 (454)
T ss_dssp             CS-CCCS--C--CTTCSEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS-CCCS--C--CTTCCEEECCSSCCSS-CC
T ss_pred             cc-cCCC--C--cCCCCEEEccCCcCCcccc-c---cCCCcEEECCCCccC-cccC--C--CCCCCEEECcCCCCCC-Cc
Confidence            65 4443  1  2456666666666655432 1   255666666666655 3332  1  1456666666666552 33


Q ss_pred             CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcC
Q 040607          158 LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENN  237 (629)
Q Consensus       158 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  237 (629)
                        .+..+++|++|++++|.+.+.                         |..   ..+|++|++++|++.+ +|.  +..+
T Consensus       148 --~~~~l~~L~~L~l~~N~l~~l-------------------------p~~---~~~L~~L~L~~n~l~~-l~~--~~~l  194 (454)
T 1jl5_A          148 --ELQNSSFLKIIDVDNNSLKKL-------------------------PDL---PPSLEFIAAGNNQLEE-LPE--LQNL  194 (454)
T ss_dssp             --CCTTCTTCCEEECCSSCCSCC-------------------------CCC---CTTCCEEECCSSCCSS-CCC--CTTC
T ss_pred             --ccCCCCCCCEEECCCCcCccc-------------------------CCC---cccccEEECcCCcCCc-Ccc--ccCC
Confidence              355566666666665554321                         111   1256666666666653 442  2455


Q ss_pred             CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEcc
Q 040607          238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLS  317 (629)
Q Consensus       238 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  317 (629)
                      ++|+.|++++|.+++++..    .++|++|++++|.+.....+..+++|++|++++|++. .+|.    .+++|++|+++
T Consensus       195 ~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~  265 (454)
T 1jl5_A          195 PFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVR  265 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC-cccc----cccccCEEECC
Confidence            6666666666655543221    1355555555555553333455555555555555554 2332    13455555555


Q ss_pred             CcccccccCcccCCCCCCcEEEccCCcCc
Q 040607          318 NNKMKGHIFSKKINLTNLWRLQLDGNHFI  346 (629)
Q Consensus       318 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  346 (629)
                      +|++++ +|..   .++|+.|++++|.++
T Consensus       266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          266 DNYLTD-LPEL---PQSLTFLDVSENIFS  290 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CCcccc-cCcc---cCcCCEEECcCCccC
Confidence            555543 2211   244555555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-37  Score=325.64  Aligned_cols=402  Identities=22%  Similarity=0.229  Sum_probs=168.7

Q ss_pred             cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCC-------------cEEEccCCcCccCCC
Q 040607           42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHL-------------QELHVDHNNLYGVPP  108 (629)
Q Consensus        42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L-------------~~L~L~~n~i~~~~~  108 (629)
                      ..+++|++++|.+ +.+|++++++++|++|++++|.+++.+|. .++.+.+|             ++|++++|.+++++.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            4677888888888 67888888888888888888888766776 67777765             555555555544332


Q ss_pred             cccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCC
Q 040607          109 WCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTP  188 (629)
Q Consensus       109 ~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  188 (629)
                        +  .++|++|++++|.++ .+|. .   .++|++|++++|.+++ ++.  +  .++|++|++++|.+           
T Consensus        89 --~--~~~L~~L~l~~n~l~-~lp~-~---~~~L~~L~l~~n~l~~-l~~--~--~~~L~~L~L~~n~l-----------  143 (454)
T 1jl5_A           89 --L--PPHLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLKA-LSD--L--PPLLEYLGVSNNQL-----------  143 (454)
T ss_dssp             --C--CTTCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCSC-CCS--C--CTTCCEEECCSSCC-----------
T ss_pred             --C--cCCCCEEEccCCcCC-cccc-c---cCCCcEEECCCCccCc-ccC--C--CCCCCEEECcCCCC-----------
Confidence              1  244555555555554 2432 1   2445555555554431 110  0  13344444444433           


Q ss_pred             cccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEE
Q 040607          189 KFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLD  268 (629)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  268 (629)
                                    ..+| .+..+++|++|++++|++++ +|..    .++|++|++++|.+++++  .+..+++|+.|+
T Consensus       144 --------------~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~  201 (454)
T 1jl5_A          144 --------------EKLP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIY  201 (454)
T ss_dssp             --------------SSCC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEE
T ss_pred             --------------CCCc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEE
Confidence                          2344 36666777777777777663 4432    246666666666666643  456666666666


Q ss_pred             ccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCccc
Q 040607          269 VSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE  348 (629)
Q Consensus       269 L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  348 (629)
                      +++|.+.+....  .++|++|++++|.+. .+|.  +..+++|++|++++|++++. |.   ..++|+.|++++|.+++ 
T Consensus       202 l~~N~l~~l~~~--~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-  271 (454)
T 1jl5_A          202 ADNNSLKKLPDL--PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-  271 (454)
T ss_dssp             CCSSCCSSCCCC--CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-
T ss_pred             CCCCcCCcCCCC--cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-
Confidence            666666542221  245666666666655 5553  23356666666666665532 22   12556666666665553 


Q ss_pred             CchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCC-CcccEEEcccCcCCCCCCCCcCC
Q 040607          349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQL-NFLQILDISKKNIFGSLPSCFNP  427 (629)
Q Consensus       349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~  427 (629)
                      +|..   .++|+.|++++|.+++. |..   .++|+.|++++|.+.+.     ..+ ++|++|++++|.+.+ +|..   
T Consensus       272 l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---  335 (454)
T 1jl5_A          272 LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---  335 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---
T ss_pred             cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---
Confidence            2221   24555566665555431 110   13455555555554431     112 245555555555443 2221   


Q ss_pred             CccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccc--cccccccCCCCCCEEECcCCcCCCCCCccc
Q 040607          428 FSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTG--LILSTFSNLKQTESLDLSYNKLTGKIPPQL  505 (629)
Q Consensus       428 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  505 (629)
                              +++|+.|++++|.++ .+|.   .+++|++|++++|++++  ..|..+.      .|  +.|...+.+|.. 
T Consensus       336 --------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~~-  394 (454)
T 1jl5_A          336 --------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPEL-  394 (454)
T ss_dssp             --------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC---------
T ss_pred             --------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hhcccccccccc-
Confidence                    344555555555554 2333   23455555555555544  2222222      11  123333333321 


Q ss_pred             cCCCCCCEEEcccCcCcc--cCCCccccccccCCCCCCCCCCCC
Q 040607          506 VELNALAVFSVAHNKLSG--KTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       506 ~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                        +++|+.|++++|++++  .+|.+      ++.+.+.+|.+.|
T Consensus       395 --~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~  430 (454)
T 1jl5_A          395 --PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD  430 (454)
T ss_dssp             --------------------------------------------
T ss_pred             --cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence              2788888888888886  45543      3444555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-37  Score=326.76  Aligned_cols=342  Identities=15%  Similarity=0.099  Sum_probs=244.1

Q ss_pred             cEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCC
Q 040607          193 NSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDN  272 (629)
Q Consensus       193 ~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n  272 (629)
                      +.++.++.....+|..+.  ++++.|++++|++.+..+..+ ..+++|++|++++|.++.+.+..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            345555555556666443  467888888888775444443 67788888888888888777777878888888888888


Q ss_pred             CCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCc
Q 040607          273 FFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP  350 (629)
Q Consensus       273 ~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  350 (629)
                      .+....+  +..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            7775554  6677788888888887773 333444457788888888888777777777778888888888887776666


Q ss_pred             hhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCcc
Q 040607          351 ESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSI  430 (629)
Q Consensus       351 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  430 (629)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|++|++++|.+.+..+..+..   
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---  246 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH---  246 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence            67777888888888888777666667777778888888777766666655555567888888877776554445544   


Q ss_pred             ccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCC
Q 040607          431 KQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNA  510 (629)
Q Consensus       431 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  510 (629)
                           +++|+.|++++|.+++..+..|..+++|+.|+|++|+++++.+..|.++++|++|++++|++++..+..|..+++
T Consensus       247 -----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  321 (477)
T 2id5_A          247 -----LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN  321 (477)
T ss_dssp             -----CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred             -----ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence                 677788888888777666667777778888888888877777777777788888888888877666666777777


Q ss_pred             CCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          511 LAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       511 L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      |+.|++++|++.|.++.. ..........+.+++..|
T Consensus       322 L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C  357 (477)
T 2id5_A          322 LETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTC  357 (477)
T ss_dssp             CCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBE
T ss_pred             cCEEEccCCCccCccchH-hHHhhhhccccCccCcee
Confidence            888888888877766521 112233345566666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.8e-36  Score=316.76  Aligned_cols=345  Identities=26%  Similarity=0.316  Sum_probs=171.8

Q ss_pred             CCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCC
Q 040607           64 SMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQ  143 (629)
Q Consensus        64 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~  143 (629)
                      .+++++.|+++++.+. .++  .+..+++|++|++++|.++++++  +.++++|++|++++|.++ .++.  +.++++|+
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred             HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCC
Confidence            3456777777777765 555  36666777777777777766654  667777777777777766 4432  66777777


Q ss_pred             EEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCC
Q 040607          144 ELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHI  223 (629)
Q Consensus       144 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n  223 (629)
                      +|++++|.+++ .+  .+..+++|++|++++|.+....                          .+..+++|++|+++ +
T Consensus       116 ~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~~L~l~-~  165 (466)
T 1o6v_A          116 GLTLFNNQITD-ID--PLKNLTNLNRLELSSNTISDIS--------------------------ALSGLTSLQQLSFG-N  165 (466)
T ss_dssp             EEECCSSCCCC-CG--GGTTCTTCSEEEEEEEEECCCG--------------------------GGTTCTTCSEEEEE-E
T ss_pred             EEECCCCCCCC-Ch--HHcCCCCCCEEECCCCccCCCh--------------------------hhccCCcccEeecC-C
Confidence            77777776652 22  2666666777776666553321                          13333444444443 1


Q ss_pred             CCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchh
Q 040607          224 NLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPER  303 (629)
Q Consensus       224 ~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  303 (629)
                      .+.+. +.  +..+++|+.|++++|.+....  .+..+++|++|++++|.+.+..+++.+++|+.|++++|.+. .++. 
T Consensus       166 ~~~~~-~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~-  238 (466)
T 1o6v_A          166 QVTDL-KP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGT-  238 (466)
T ss_dssp             SCCCC-GG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-
T ss_pred             cccCc-hh--hccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cchh-
Confidence            22211 11  133334444444443333221  23334444444444444444444444555555555555544 2221 


Q ss_pred             hhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCC
Q 040607          304 LAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVS  383 (629)
Q Consensus       304 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  383 (629)
                       +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+         
T Consensus       239 -l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---------  304 (466)
T 1o6v_A          239 -LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---------  304 (466)
T ss_dssp             -GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---------
T ss_pred             -hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh---------
Confidence             1224455555555555443322  4444555555555554443222  4444444444444444433221         


Q ss_pred             ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccccc
Q 040607          384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI  463 (629)
Q Consensus       384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  463 (629)
                                       +..+++|+.|++++|++.+..|  +..        +++|+.|++++|.+++.  ..+..+++|
T Consensus       305 -----------------~~~l~~L~~L~L~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~~~--~~l~~l~~L  355 (466)
T 1o6v_A          305 -----------------ISNLKNLTYLTLYFNNISDISP--VSS--------LTKLQRLFFYNNKVSDV--SSLANLTNI  355 (466)
T ss_dssp             -----------------GGGCTTCSEEECCSSCCSCCGG--GGG--------CTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             -----------------hcCCCCCCEEECcCCcCCCchh--hcc--------CccCCEeECCCCccCCc--hhhccCCCC
Confidence                             3344444444444444443332  111        44555555555555422  234455555


Q ss_pred             ceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607          464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT  498 (629)
Q Consensus       464 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  498 (629)
                      +.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            555555555555443  455555555555555555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.3e-35  Score=311.53  Aligned_cols=343  Identities=23%  Similarity=0.287  Sum_probs=166.8

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      .+++|+++++.+.. +| .+..+++|++|++++|.++ .+++  +..+++|++|++++|.+.++++  +.++++|++|++
T Consensus        47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            34555555555543 23 2455555555555555555 3432  5555555555555555555443  555555555555


Q ss_pred             ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCC
Q 040607          123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG  202 (629)
Q Consensus       123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~  202 (629)
                      ++|.++ .++  .+.++++|++|++++|.+.+ .+  .+..+++|+.|++++ .+....   .+..+.+|+.|+++++..
T Consensus       120 ~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~~~~---~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          120 FNNQIT-DID--PLKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVTDLK---PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             CSSCCC-CCG--GGTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCCCCG---GGTTCTTCCEEECCSSCC
T ss_pred             CCCCCC-CCh--HHcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-cccCch---hhccCCCCCEEECcCCcC
Confidence            555555 333  25555555555555555542 21  355555555555532 111110   012222222222222222


Q ss_pred             CCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCC
Q 040607          203 VTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGN  282 (629)
Q Consensus       203 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~  282 (629)
                      ..++ .+..+++|++|++++|++.+..|   +..+++|+.|++++|.++.+  ..+..+++|+.|++++|.+.+..++..
T Consensus       190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~  263 (466)
T 1o6v_A          190 SDIS-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG  263 (466)
T ss_dssp             CCCG-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred             CCCh-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhc
Confidence            2222 24455556666666665553333   23455555555555555543  234455555555555555555444555


Q ss_pred             CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCce
Q 040607          283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL  362 (629)
Q Consensus       283 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  362 (629)
                      +++|+.|++++|.+. .++.  +..+++|++|++++|++.+..+  +..+++|+.|++++|.+++..|  +..+++|+.|
T Consensus       264 l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          264 LTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             CTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            555555555555555 2222  2235555555555555554322  4445555555555555554333  4455555555


Q ss_pred             eccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC
Q 040607          363 YLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG  419 (629)
Q Consensus       363 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  419 (629)
                      ++++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            5555555432  234445555555555555544433  4445555555555554433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1e-35  Score=311.51  Aligned_cols=363  Identities=17%  Similarity=0.162  Sum_probs=203.4

Q ss_pred             cCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCc
Q 040607           54 LDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISS  133 (629)
Q Consensus        54 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~  133 (629)
                      ..+..+..++++++|++|++++|.++ .+|  ++..+++|++|++++|++++++   +.++++|++|++++|.++ .++ 
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~-~~~-  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLT-NLD-  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS-CCC-
T ss_pred             cCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCc-eee-
Confidence            33444456777788888888888877 454  4777788888888888877763   677788888888888777 442 


Q ss_pred             cccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCC
Q 040607          134 PPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQH  213 (629)
Q Consensus       134 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~  213 (629)
                        ++++++|++|++++|.+++ ++   +..+++|+.|++++|.+.+..                           +..++
T Consensus       102 --~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~---------------------------l~~l~  148 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID---------------------------VSHNT  148 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC---------------------------CTTCT
T ss_pred             --cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec---------------------------cccCC
Confidence              6777888888888887763 32   667777888888877765421                           22334


Q ss_pred             CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccC
Q 040607          214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK  293 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~  293 (629)
                      +|++|++++|+..+.++   +..+++|+.|++++|.+++++   +..+++|+.|++++|.+.+. ++..+++|+.|++++
T Consensus       149 ~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~  221 (457)
T 3bz5_A          149 QLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSS  221 (457)
T ss_dssp             TCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCS
T ss_pred             cCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcC
Confidence            44555555443222221   134445555555555554432   44455555555555555543 355555666666666


Q ss_pred             CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607          294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI  373 (629)
Q Consensus       294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  373 (629)
                      |++++ +|   +..+++|++|++++|++++..   +..+++|+.|++++|              +|+.|++++|...+.+
T Consensus       222 N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          222 NKLTE-ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             SCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred             Ccccc-cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence            66553 44   223556666666666655432   234455555555543              2344555555544444


Q ss_pred             cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCC
Q 040607          374 PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEI  453 (629)
Q Consensus       374 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  453 (629)
                      |  ++.+++|+.|++++|...+.+|.   ..++|+.|++++                     +++|+.|++++|++++. 
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~---------------------~~~L~~L~L~~N~l~~l-  333 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ---------------------NPKLVYLYLNNTELTEL-  333 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT---------------------CTTCCEEECTTCCCSCC-
T ss_pred             c--ccccccCCEEECCCCcccceecc---CCCcceEechhh---------------------cccCCEEECCCCccccc-
Confidence            3  34455555555555554443332   223344444333                     23455555666655542 


Q ss_pred             ccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCC
Q 040607          454 PLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPD  527 (629)
Q Consensus       454 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  527 (629)
                      +  +..+++|+.|++++|+++++        +.|+.|++++|.+++.     ..+..|+.+++++|+++|.+|.
T Consensus       334 ~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          334 D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred             c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence            2  55555666666666655541        3344445555555533     1233445556666666665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-36  Score=318.03  Aligned_cols=323  Identities=21%  Similarity=0.202  Sum_probs=287.8

Q ss_pred             CCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEecc
Q 040607          215 LKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLS  292 (629)
Q Consensus       215 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~  292 (629)
                      -+.++.++++++ .+|..+   .+.++.|++++|.++.+.+..|..+++|++|++++|.+....+  +..+++|++|+++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            457888888887 677654   3688999999999999988999999999999999999987755  8899999999999


Q ss_pred             CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCC
Q 040607          293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK  372 (629)
Q Consensus       293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  372 (629)
                      +|.+. .+|...+..+++|++|++++|++.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus        89 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           89 SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             SSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            99988 77877777799999999999999988888999999999999999999988888999999999999999999977


Q ss_pred             ccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC
Q 040607          373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE  452 (629)
Q Consensus       373 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  452 (629)
                      .+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|+..+..+.....        ..+|+.|++++|.+++.
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------GLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------TCCCSEEEEESSCCCSC
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------CccccEEECcCCccccc
Confidence            7778999999999999999999888888999999999999999887766665543        45899999999999965


Q ss_pred             CccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc
Q 040607          453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF  532 (629)
Q Consensus       453 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  532 (629)
                      .+..+..+++|+.|+|++|.++++.+..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence            55788999999999999999999888889999999999999999998889999999999999999999998888878889


Q ss_pred             cccCCCCCCCCCCCCCCCC
Q 040607          533 ATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       533 ~~l~~l~~~~np~~c~~C~  551 (629)
                      ++++.+++++|||.| +|.
T Consensus       320 ~~L~~L~l~~N~l~c-~c~  337 (477)
T 2id5_A          320 GNLETLILDSNPLAC-DCR  337 (477)
T ss_dssp             GGCCEEECCSSCEEC-SGG
T ss_pred             cccCEEEccCCCccC-ccc
Confidence            999999999999999 664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1e-34  Score=303.87  Aligned_cols=355  Identities=18%  Similarity=0.197  Sum_probs=271.5

Q ss_pred             cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607           42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN  121 (629)
Q Consensus        42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  121 (629)
                      ..+++|++++|.+++. | .++.+++|++|++++|.++ .++   +..+++|++|++++|.+++++   +.++++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEE
Confidence            4678888888888864 5 5888889999999998887 453   778888999999999888763   78888999999


Q ss_pred             cccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC
Q 040607          122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS  201 (629)
Q Consensus       122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (629)
                      +++|.++ .++   ++.+++|++|++++|.+++ +   .+..+++|+.|++++|...+..                    
T Consensus       113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~--------------------  164 (457)
T 3bz5_A          113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL--------------------  164 (457)
T ss_dssp             CCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC--------------------
T ss_pred             CCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc--------------------
Confidence            9999888 453   7888899999999988874 3   3678888888888888532211                    


Q ss_pred             CCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCC
Q 040607          202 GVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVG  281 (629)
Q Consensus       202 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  281 (629)
                            .+..+++|++|++++|++++ +|   +..+++|+.|++++|.++++   .+..+++|+.|++++|++.+ .|+.
T Consensus       165 ------~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip~~  230 (457)
T 3bz5_A          165 ------DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-IDVT  230 (457)
T ss_dssp             ------CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CCCT
T ss_pred             ------ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cCcc
Confidence                  14456778888888888774 44   35677888888888888775   47778888999999998887 4588


Q ss_pred             CCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCc
Q 040607          282 NMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG  361 (629)
Q Consensus       282 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  361 (629)
                      .+++|+.|++++|.+++ +|.   ..+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.
T Consensus       231 ~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~  290 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE  290 (457)
T ss_dssp             TCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred             ccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence            88999999999998884 442   23778888888765              35667888888776665  467889999


Q ss_pred             eeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCe
Q 040607          362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSG  441 (629)
Q Consensus       362 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~  441 (629)
                      |++++|...+.+|.   ..+.++.+++++|             ++|++|++++|++.+. +  +..        +++|+.
T Consensus       291 L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~--------l~~L~~  343 (457)
T 3bz5_A          291 LDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSH--------NTKLKS  343 (457)
T ss_dssp             CCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTT--------CTTCSE
T ss_pred             EECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--ccc--------CCcCcE
Confidence            99999987766663   3456666655544             6889999999998774 2  444        789999


Q ss_pred             eecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccC
Q 040607          442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVE  507 (629)
Q Consensus       442 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  507 (629)
                      |++++|++++        ++.|..|++++|.+.+.     ..+..|+.+++++|++++.+|..+..
T Consensus       344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             EECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             EECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            9999998884        35677788999988875     24456778899999999888875543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-33  Score=288.78  Aligned_cols=328  Identities=17%  Similarity=0.118  Sum_probs=162.2

Q ss_pred             ccccEEEeccCCCCCcChh-hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEE
Q 040607          190 FQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLD  268 (629)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  268 (629)
                      .+++.++++++....+|.. +..+++|++|++++|++.+..+.. +..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh-ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            3555555554444444433 344555555555555554322223 24555555555555555555555555555555555


Q ss_pred             ccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCc
Q 040607          269 VSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI  346 (629)
Q Consensus       269 L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  346 (629)
                      +++|.+....+  +..+++|++|++++|.+. .++...+..+++|++|++++|++++..   +..+++|+.|++++|.++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence            55555554333  345555555555555555 333333333555555555555554331   233455555555555444


Q ss_pred             ccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcC
Q 040607          347 GEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN  426 (629)
Q Consensus       347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  426 (629)
                      +     +...++|+.|++++|.+... |..  ..++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..+.
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             c-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            2     12233455555555555422 211  124555555555555532  3455555555555555555555454444


Q ss_pred             CCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCcccc
Q 040607          427 PFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLV  506 (629)
Q Consensus       427 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  506 (629)
                      .        +++|+.|++++|.++ .+|..+..+++|++|++++|+++++ |..+..+++|++|++++|+++.. +  +.
T Consensus       270 ~--------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~  336 (390)
T 3o6n_A          270 K--------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LS  336 (390)
T ss_dssp             T--------CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             c--------cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--ch
Confidence            4        555555555555555 3344444555555555555555543 23344555555555555555532 2  34


Q ss_pred             CCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          507 ELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       507 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      .+++|+.|++++|++.+....  ..+..+....+.+++..|
T Consensus       337 ~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c  375 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHC  375 (390)
T ss_dssp             TTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCC
T ss_pred             hhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCcee
Confidence            455555555555555543321  222333344444555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2e-32  Score=277.88  Aligned_cols=304  Identities=20%  Similarity=0.258  Sum_probs=176.1

Q ss_pred             CCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEe
Q 040607          211 HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLD  290 (629)
Q Consensus       211 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~  290 (629)
                      .+++|++|+++++.+. .++.  +..+++|++|++++|.++.+.+  +..+++|++|++++|.+.....+..+++|++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~  116 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELY  116 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence            4455666666666554 2332  2455666666666665555443  555666666666666655544456666666666


Q ss_pred             ccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccC
Q 040607          291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS  370 (629)
Q Consensus       291 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  370 (629)
                      +++|.+. .++.  +..+++|++|++++|......+ .+..+++|++|++++|.+....+  +..+++|+.|++++|.+.
T Consensus       117 l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          117 LNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             CTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             CcCCccc-Cchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            6666655 3333  3345666666666664333222 25566666666666666553322  556666666666666665


Q ss_pred             CCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC
Q 040607          371 GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT  450 (629)
Q Consensus       371 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  450 (629)
                      +..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+..+  +..        +++|+.|++++|.++
T Consensus       191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~--------l~~L~~L~l~~n~l~  256 (347)
T 4fmz_A          191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN--------LSQLTWLEIGTNQIS  256 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT--------CTTCCEEECCSSCCC
T ss_pred             cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc--------CCCCCEEECCCCccC
Confidence            3322  5556666666666666654332  5566666666666666654333  322        566666666666665


Q ss_pred             CCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccc
Q 040607          451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVA  530 (629)
Q Consensus       451 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  530 (629)
                      + + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|  +.
T Consensus       257 ~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  330 (347)
T 4fmz_A          257 D-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA  330 (347)
T ss_dssp             C-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred             C-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence            3 2 3456666666666666666654  245666666666666666666666666666666666666666665554  45


Q ss_pred             cccccCCCCCCCCCC
Q 040607          531 QFATFNGSSYDGNPF  545 (629)
Q Consensus       531 ~~~~l~~l~~~~np~  545 (629)
                      .+++++.+++++|+.
T Consensus       331 ~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          331 SLSKMDSADFANQVI  345 (347)
T ss_dssp             GCTTCSEESSSCC--
T ss_pred             hhhccceeehhhhcc
Confidence            666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.6e-32  Score=279.76  Aligned_cols=308  Identities=20%  Similarity=0.194  Sum_probs=177.2

Q ss_pred             CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607           11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF   90 (629)
Q Consensus        11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l   90 (629)
                      ++++++|+++++.+....+..++.+      ..|++|++++|.+++..+.+++.+++|++|++++|.++ .+++..|.++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l------~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l  116 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV  116 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHC------CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             cCCceEEEecCCchhhCChhHhccc------ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCC
Confidence            5667777777776654443334444      35667777777777666666777777777777777776 4554466777


Q ss_pred             CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607           91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF  170 (629)
Q Consensus        91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  170 (629)
                      ++|++|++++|+++.+++..|.++++|++|++++|.++ .+++..+.++++|++|++++|.+++ .   .+..+++|+.|
T Consensus       117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L  191 (390)
T 3o6n_A          117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHA  191 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEE
T ss_pred             CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCc-c---cccccccccee
Confidence            77777777777777666666677777777777777776 4544466777777777777776652 2   24556667777


Q ss_pred             ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccc
Q 040607          171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYL  250 (629)
Q Consensus       171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~  250 (629)
                      ++++|.+.....      ..+|++|+++++....+|...  .++|++|++++|++.+.  .. +..+++|+.|++++|.+
T Consensus       192 ~l~~n~l~~~~~------~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~l  260 (390)
T 3o6n_A          192 NVSYNLLSTLAI------PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNEL  260 (390)
T ss_dssp             ECCSSCCSEEEC------CSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCC
T ss_pred             ecccccccccCC------CCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HH-HcCCCCccEEECCCCcC
Confidence            777776644321      125555555554444443322  24555666665555532  22 24555555555555555


Q ss_pred             cccCCCCcccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCccc
Q 040607          251 SGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKK  329 (629)
Q Consensus       251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  329 (629)
                      ++..+..+..+++|+.|++++|++..... +..+++|++|++++|.+. .+|..+.. +++|++|++++|+++...   +
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~~~---~  335 (390)
T 3o6n_A          261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTLK---L  335 (390)
T ss_dssp             CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCCC---C
T ss_pred             CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccc-cCcCCEEECCCCccceeC---c
Confidence            55555555555555555555555554333 334455555555555554 44443332 455555555555554321   3


Q ss_pred             CCCCCCcEEEccCCcCc
Q 040607          330 INLTNLWRLQLDGNHFI  346 (629)
Q Consensus       330 ~~l~~L~~L~l~~n~l~  346 (629)
                      ..+++|+.|++++|++.
T Consensus       336 ~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          336 STHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CTTCCCSEEECCSSCEE
T ss_pred             hhhccCCEEEcCCCCcc
Confidence            34445555555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.9e-32  Score=275.83  Aligned_cols=307  Identities=19%  Similarity=0.262  Sum_probs=248.2

Q ss_pred             cCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCC
Q 040607          161 LYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL  240 (629)
Q Consensus       161 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L  240 (629)
                      +..+++|+.|+++++.+.                         .++. +..+++|++|++++|++.+ ++.  +..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~-------------------------~~~~-~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L   90 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-------------------------SIQG-IEYLTNLEYLNLNGNQITD-ISP--LSNLVKL   90 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-------------------------CCTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTC
T ss_pred             chhcccccEEEEeCCccc-------------------------cchh-hhhcCCccEEEccCCcccc-chh--hhcCCcC
Confidence            345666777777776653                         2332 6677888888888888874 443  4688888


Q ss_pred             cEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcc
Q 040607          241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK  320 (629)
Q Consensus       241 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  320 (629)
                      ++|++++|.++.+.  .+..+++|++|++++|.+....++..+++|+.|++++|.....++.  +..+++|++|++++|.
T Consensus        91 ~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A           91 TNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK  166 (347)
T ss_dssp             CEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             CEEEccCCcccCch--HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCC
Confidence            88888888887753  5788889999999999888777788899999999999966544444  4458899999999998


Q ss_pred             cccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcc
Q 040607          321 MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME  400 (629)
Q Consensus       321 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  400 (629)
                      +.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.+++++|.+.+..+  +..+++|+.|++++|.+.+..+  
T Consensus       167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence            876544  7788999999999998875433  8889999999999999886544  7888999999999999986544  


Q ss_pred             ccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccccc
Q 040607          401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST  480 (629)
Q Consensus       401 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  480 (629)
                      +..+++|++|++++|.+.+.  ..+..        +++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+..
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKD--------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTT--------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhc--------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence            88999999999999988764  33443        88999999999999853  46889999999999999999999999


Q ss_pred             ccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607          481 FSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS  522 (629)
Q Consensus       481 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  522 (629)
                      |.++++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999999999997655  888999999999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.7e-33  Score=301.60  Aligned_cols=330  Identities=17%  Similarity=0.119  Sum_probs=211.2

Q ss_pred             cccccEEEeccCCCCCcChh-hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEE
Q 040607          189 KFQLNSIILSHGSGVTFPKF-LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYL  267 (629)
Q Consensus       189 ~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  267 (629)
                      +.+++.++++++....+|.. +..+++|+.|++++|.+.+..|..+ ..+++|+.|++++|.++.+++..|+.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            34666677776655555543 4566777777777777764444443 566777777777777777766667777777777


Q ss_pred             EccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcC
Q 040607          268 DVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHF  345 (629)
Q Consensus       268 ~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  345 (629)
                      ++++|.+....+  +..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+++..   +..+++|+.|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            777777665544  5667777777777777763 33333344677777777777766542   34456677777777766


Q ss_pred             cccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCc
Q 040607          346 IGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF  425 (629)
Q Consensus       346 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  425 (629)
                      ++     +...++|+.|++++|.+....+ .+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            53     2334567777777777653222 22  25677777777777652  556677777777777777777666666


Q ss_pred             CCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccc
Q 040607          426 NPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL  505 (629)
Q Consensus       426 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  505 (629)
                      ..        +++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++++ |..+..+++|+.|++++|.+++. |  +
T Consensus       275 ~~--------l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~-~--~  341 (597)
T 3oja_B          275 VK--------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--L  341 (597)
T ss_dssp             TT--------CSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--C
T ss_pred             cC--------ccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCc-C--h
Confidence            55        677777777777776 3455556677777777777777643 44456677777777777777643 2  4


Q ss_pred             cCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCC
Q 040607          506 VELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSS  548 (629)
Q Consensus       506 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~  548 (629)
                      ..+++|+.|++++|++.|.+..  ..+..+....+.+++..|.
T Consensus       342 ~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~  382 (597)
T 3oja_B          342 STHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCK  382 (597)
T ss_dssp             CTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCC
T ss_pred             hhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCC
Confidence            5566777777777777765432  2334444555666666664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.4e-33  Score=278.29  Aligned_cols=253  Identities=28%  Similarity=0.417  Sum_probs=228.3

Q ss_pred             CCccEEeccCCCCCc--ccchhhhhCCCCCcEEEccC-cccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCC
Q 040607          284 KSLSVLDLSKNRLIG--KIPERLAMGCFSLRYLVLSN-NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG  360 (629)
Q Consensus       284 ~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  360 (629)
                      .+++.|++++|.+.+  .+|..+.. +++|++|++++ |.+.+..|..|..+++|++|++++|.+++..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            568888888888887  67776654 88999999995 888888888888999999999999999888888899999999


Q ss_pred             ceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCC-cccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607          361 GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLN-FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM  439 (629)
Q Consensus       361 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  439 (629)
                      +|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+.+..|..+..        +. |
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--------l~-L  199 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------LN-L  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------CC-C
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------Cc-c
Confidence            999999999888888899999999999999999888888899988 9999999999998888888876        55 9


Q ss_pred             CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607          440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  519 (629)
                      +.|++++|.+++..|..+..+++|+.|+|++|.+++.++. +..+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus       200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            9999999999988899999999999999999999987665 888999999999999999999999999999999999999


Q ss_pred             cCcccCCCccccccccCCCCCCCCCCCCC
Q 040607          520 KLSGKTPDWVAQFATFNGSSYDGNPFLSS  548 (629)
Q Consensus       520 ~l~~~~~~~~~~~~~l~~l~~~~np~~c~  548 (629)
                      ++++.+|.. ..+++++.+++.+||+.|+
T Consensus       279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             cccccCCCC-ccccccChHHhcCCCCccC
Confidence            999999986 8899999999999999885

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-31  Score=288.33  Aligned_cols=309  Identities=22%  Similarity=0.225  Sum_probs=163.9

Q ss_pred             CCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCC
Q 040607           11 LTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEF   90 (629)
Q Consensus        11 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l   90 (629)
                      ++++++|++++|.++...+..++.+      ..|++|+|++|.+++..|..|+.+++|++|+|++|.++ .+++..|.++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHC------CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccC------CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCC
Confidence            4566666666666654444444444      35666666666666666666666666666666666666 4444456666


Q ss_pred             CCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEE
Q 040607           91 VHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIF  170 (629)
Q Consensus        91 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  170 (629)
                      ++|++|+|++|.++++++..|.++++|++|++++|.++ .+++..++++++|++|++++|.+++ .   .+..+++|+.|
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~-~---~~~~l~~L~~L  197 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHA  197 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSB-C---CGGGCTTCSEE
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCC-c---Chhhhhhhhhh
Confidence            66666666666666666655666666666666666666 4444456666666666666666652 2   24455666666


Q ss_pred             ECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccc
Q 040607          171 DSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYL  250 (629)
Q Consensus       171 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~  250 (629)
                      ++++|.+.....      ..+|+.|+++++....++..+  .++|+.|++++|.+++  +..+ ..+++|+.|++++|.+
T Consensus       198 ~l~~n~l~~l~~------~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l-~~l~~L~~L~Ls~N~l  266 (597)
T 3oja_B          198 NVSYNLLSTLAI------PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWL-LNYPGLVEVDLSYNEL  266 (597)
T ss_dssp             ECCSSCCSEEEC------CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGG-GGCTTCSEEECCSSCC
T ss_pred             hcccCccccccC------CchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--Chhh-ccCCCCCEEECCCCcc
Confidence            666665543321      124455555544333333222  1344555555554442  1221 3444444444444444


Q ss_pred             cccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccC
Q 040607          251 SGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI  330 (629)
Q Consensus       251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  330 (629)
                      .+..+..+                      ..+++|+.|++++|.++ .+|.... .+++|++|++++|.+. .+|..+.
T Consensus       267 ~~~~~~~~----------------------~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~  321 (597)
T 3oja_B          267 EKIMYHPF----------------------VKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQP  321 (597)
T ss_dssp             CEEESGGG----------------------TTCSSCCEEECTTSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             CCCCHHHh----------------------cCccCCCEEECCCCCCC-CCCcccc-cCCCCcEEECCCCCCC-ccCcccc
Confidence            44444444                      44455555555555544 2333222 2445555555555554 2333344


Q ss_pred             CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccC
Q 040607          331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLS  370 (629)
Q Consensus       331 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  370 (629)
                      .+++|+.|++++|.+++..   +..+++|+.|++++|++.
T Consensus       322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred             cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence            4555555555555554331   334455555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=3.4e-31  Score=266.79  Aligned_cols=285  Identities=20%  Similarity=0.248  Sum_probs=157.4

Q ss_pred             CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEec
Q 040607          214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDL  291 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L  291 (629)
                      +++.++++++.+. .+|..+   .+.++.|++++|.++.+.+..|..+++|++|++++|.+....+  +..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4777777777776 556543   2567777777777777766677777777777777777765533  666777777777


Q ss_pred             cCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcc--cCchhhhccccCCceecccccc
Q 040607          292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIG--EIPESLSNCNLFGGLYLSDNHL  369 (629)
Q Consensus       292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l  369 (629)
                      ++|.++ .+|..++   ++|++|++++|.+....+..|..+++|+.|++++|.++.  ..+..+..+ +|+.|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            777766 5665443   567777777777766555566667777777777776642  444555555 666666666665


Q ss_pred             CCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607          370 SGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL  449 (629)
Q Consensus       370 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  449 (629)
                      .+ +|..+.  ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..        +++|+.|++++|.+
T Consensus       185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--------LPTLRELHLDNNKL  253 (332)
T ss_dssp             SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--------CTTCCEEECCSSCC
T ss_pred             Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--------CCCCCEEECCCCcC
Confidence            53 332222  44555555555555444444444455555555554444444433333        44444444444444


Q ss_pred             CCCCccccccccccceEeccCccccccccccccCC------CCCCEEECcCCcCC--CCCCccccCCCCCCEEEcccC
Q 040607          450 TGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL------KQTESLDLSYNKLT--GKIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       450 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N  519 (629)
                      + .+|..+..+++|++|++++|+++++++..|...      ..|+.|++++|++.  ...|..|..+++|+.+++++|
T Consensus       254 ~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             C-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             e-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            4 344444444444444444444444443333321      33444444444443  233334444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.8e-31  Score=264.04  Aligned_cols=286  Identities=19%  Similarity=0.199  Sum_probs=178.8

Q ss_pred             CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEec
Q 040607          214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDL  291 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L  291 (629)
                      +++.++++++.+. .+|..+   .+.++.|++++|.++++.+..+..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4667777776665 455433   2566777777777777666667777777777777777765543  666777777777


Q ss_pred             cCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcc--cCchhhhccccCCceecccccc
Q 040607          292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIG--EIPESLSNCNLFGGLYLSDNHL  369 (629)
Q Consensus       292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l  369 (629)
                      ++|.++ .+|..++   ++|++|++++|.+.+..+..|..+++|+.|++++|.+..  ..+..+..+++|++|++++|.+
T Consensus       108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            777766 5665443   567777777777776666667777777777777776643  4556667777777777777776


Q ss_pred             CCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607          370 SGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL  449 (629)
Q Consensus       370 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  449 (629)
                      .. +|..+.  ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..        +++|+.|++++|.+
T Consensus       184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l  252 (330)
T 1xku_A          184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--------TPHLRELHLNNNKL  252 (330)
T ss_dssp             CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--------STTCCEEECCSSCC
T ss_pred             cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--------CCCCCEEECCCCcC
Confidence            63 333322  56666666666666555566666666666666666665555545544        56666666666666


Q ss_pred             CCCCccccccccccceEeccCccccccccccccCC------CCCCEEECcCCcCCC--CCCccccCCCCCCEEEcccC
Q 040607          450 TGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL------KQTESLDLSYNKLTG--KIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       450 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N  519 (629)
                      + .+|..+..+++|++|++++|+++++.+..|...      +.++.|++++|.+..  ..|..|..+++++.+++++|
T Consensus       253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            5 555556666666666666666666555555322      455666666665542  34455555566666666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.8e-30  Score=258.28  Aligned_cols=289  Identities=18%  Similarity=0.233  Sum_probs=184.6

Q ss_pred             cccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeee
Q 040607           42 CFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN  121 (629)
Q Consensus        42 ~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  121 (629)
                      +.+++++++++.++. +|..+.  +++++|++++|.++ .+++..|.++++|++|++++|.++++.|..|.++++|++|+
T Consensus        31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            356788888887763 454443  57888888888887 66665788888888888888888888777888888888888


Q ss_pred             cccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC
Q 040607          122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS  201 (629)
Q Consensus       122 L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (629)
                      +++|.++ .+|. .+.  ++|++|++++|.++ .++...+..+++|+.|++++|.+....                    
T Consensus       107 Ls~n~l~-~l~~-~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------  161 (330)
T 1xku_A          107 LSKNQLK-ELPE-KMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG--------------------  161 (330)
T ss_dssp             CCSSCCS-BCCS-SCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG--------------------
T ss_pred             CCCCcCC-ccCh-hhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC--------------------
Confidence            8888887 7766 232  68888888888877 444456777888888888877764311                    


Q ss_pred             CCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--
Q 040607          202 GVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--  279 (629)
Q Consensus       202 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--  279 (629)
                        ..+..+..+++|++|++++|++. .+|..+   .++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+  
T Consensus       162 --~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  235 (330)
T 1xku_A          162 --IENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  235 (330)
T ss_dssp             --BCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             --cChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence              12345666777777777777776 344433   1566666666666666655566666666666666666654443  


Q ss_pred             CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCC------CCCcEEEccCCcCcc--cCch
Q 040607          280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINL------TNLWRLQLDGNHFIG--EIPE  351 (629)
Q Consensus       280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~--~~~~  351 (629)
                      +..+++|++|++++|.+. .+|..+. .+++|++|++++|++++..+..|...      +.++.+++++|.+..  ..|.
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~  313 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS  313 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             ccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc
Confidence            455566666666666665 5555443 25666666666666665555444322      445555555555432  3344


Q ss_pred             hhhccccCCceecccc
Q 040607          352 SLSNCNLFGGLYLSDN  367 (629)
Q Consensus       352 ~~~~l~~L~~L~l~~n  367 (629)
                      .|..++.++.+++++|
T Consensus       314 ~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          314 TFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGTTCCCGGGEEC---
T ss_pred             ccccccceeEEEeccc
Confidence            4455555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1e-29  Score=256.06  Aligned_cols=286  Identities=16%  Similarity=0.121  Sum_probs=234.2

Q ss_pred             CCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEc
Q 040607          239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVL  316 (629)
Q Consensus       239 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  316 (629)
                      .++.++++++.++.++...   .++++.|++++|.+....+  +..+++|++|++++|.+++..|. .+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence            6889999999988765433   3689999999999987755  88999999999999999844344 4456899999999


Q ss_pred             cCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCC--CccccccCCCCCccccCCCCccc
Q 040607          317 SNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG--KIPRWLGNLSVSEDVIMPNNHLE  394 (629)
Q Consensus       317 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~  394 (629)
                      ++|.++.. |..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+ +|+.|++++|.++
T Consensus       110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            99999854 43333  789999999999998777789999999999999999853  566777777 8999999999998


Q ss_pred             CCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccc
Q 040607          395 GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT  474 (629)
Q Consensus       395 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  474 (629)
                      + +|..+.  ++|++|++++|.+.+..+..+..        +++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT--------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcC--------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence            6 444433  78999999999998888787766        889999999999999777778999999999999999998


Q ss_pred             ccccccccCCCCCCEEECcCCcCCCCCCccccCC------CCCCEEEcccCcCc--ccCCCccccccccCCCCCCCCC
Q 040607          475 GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL------NALAVFSVAHNKLS--GKTPDWVAQFATFNGSSYDGNP  544 (629)
Q Consensus       475 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~l~~~~np  544 (629)
                      . .|..+..+++|++|++++|++++..+..|...      ++|+.|++++|++.  +..|..+..+..++.+++++|.
T Consensus       255 ~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          255 R-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             B-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             e-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            5 46668899999999999999997777777653      67899999999987  5667778888899999888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.3e-31  Score=265.11  Aligned_cols=253  Identities=28%  Similarity=0.441  Sum_probs=221.1

Q ss_pred             CCccEEEccCCCCcc--ccc--CCCCCCccEEeccC-CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCc
Q 040607          262 RHLTYLDVSDNFFQV--HIP--VGNMKSLSVLDLSK-NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW  336 (629)
Q Consensus       262 ~~L~~L~L~~n~~~~--~~~--~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  336 (629)
                      .+++.|++++|.+.+  ..+  +..+++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..|..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467788888887775  333  77888888899884 8888778877654 89999999999999888888899999999


Q ss_pred             EEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCC-CCccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607          337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLS-VSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK  415 (629)
Q Consensus       337 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  415 (629)
                      +|++++|.+++..|..+..+++|++|++++|.+.+..|..+..++ .|+.|++++|.+.+..|..+..++ |++|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999999999888899999999999999999999888888888887 999999999999988898898887 999999999


Q ss_pred             cCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCC
Q 040607          416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN  495 (629)
Q Consensus       416 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  495 (629)
                      .+.+..|..+..        +++|+.|++++|.+++..|. +..+++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus       208 ~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          208 MLEGDASVLFGS--------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EEEECCGGGCCT--------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccCcCCHHHhc--------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            998888888876        89999999999999865554 788999999999999999889999999999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          496 KLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       496 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ++++.+|.. ..+++|+.+++++|+..+..|
T Consensus       279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             cccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            999889886 789999999999999554433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.5e-33  Score=295.23  Aligned_cols=384  Identities=14%  Similarity=0.053  Sum_probs=283.9

Q ss_pred             CCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEE
Q 040607          140 KSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVN  219 (629)
Q Consensus       140 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  219 (629)
                      ++|++|++++|.++.......+..+++|+.|++++|.+.....                    ..++..+..+++|++|+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~   62 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN   62 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence            5678899988887633222336778888888888887643211                    13566788889999999


Q ss_pred             ccCCCCCCCCChhHHhcCC----CCcEEeccCcccccc----CCCCcccCCCccEEEccCCCCccccc-------CCCCC
Q 040607          220 LSHINLRGEFPNWLSENNT----KLQTLVQVNNYLSGI----FQMPKHARRHLTYLDVSDNFFQVHIP-------VGNMK  284 (629)
Q Consensus       220 L~~n~l~~~~~~~~~~~~~----~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~-------~~~~~  284 (629)
                      +++|++.+..+..+...++    +|++|++++|.++..    .+..+..+++|++|++++|.+....+       ....+
T Consensus        63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence            9999988656666666666    699999999998853    35677888999999999999875332       33467


Q ss_pred             CccEEeccCCCCCcccchh---hhhCCCCCcEEEccCcccccccCcccC-----CCCCCcEEEccCCcCccc----Cchh
Q 040607          285 SLSVLDLSKNRLIGKIPER---LAMGCFSLRYLVLSNNKMKGHIFSKKI-----NLTNLWRLQLDGNHFIGE----IPES  352 (629)
Q Consensus       285 ~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~  352 (629)
                      +|++|++++|.+++.....   .+..+++|++|++++|.+....+..+.     ..++|++|++++|.++..    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            8999999999988543222   223478999999999998765544443     366999999999998864    4677


Q ss_pred             hhccccCCceeccccccCCCc-----cccccCCCCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCCCC
Q 040607          353 LSNCNLFGGLYLSDNHLSGKI-----PRWLGNLSVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSLPS  423 (629)
Q Consensus       353 ~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~  423 (629)
                      +..+++|++|++++|.+.+..     +..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            888999999999999886432     23334689999999999998754    466677799999999999988543332


Q ss_pred             CcCCCccccCCCccCCCeeecccccCCCC----CccccccccccceEeccCccccccccccccC-----CCCCCEEECcC
Q 040607          424 CFNPFSIKQGKPLNSMSGLDLSCNKLTGE----IPLRIGNLTRIHTLNVSHNKLTGLILSTFSN-----LKQTESLDLSY  494 (629)
Q Consensus       424 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~  494 (629)
                      .+...   .....++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++
T Consensus       303 ~l~~~---l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          303 LLCET---LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHH---HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHH---hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence            22110   001136899999999999854    3556777899999999999998775554442     67999999999


Q ss_pred             CcCCC----CCCccccCCCCCCEEEcccCcCcccCCCccc-----cccccCCCCCCCCCCC
Q 040607          495 NKLTG----KIPPQLVELNALAVFSVAHNKLSGKTPDWVA-----QFATFNGSSYDGNPFL  546 (629)
Q Consensus       495 N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~~l~~l~~~~np~~  546 (629)
                      |++++    .+|..+..+++|++|++++|++.......+.     ...+++.+.+.++.+.
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            99985    6788888899999999999999854221111     1234666666666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=265.19  Aligned_cols=251  Identities=19%  Similarity=0.176  Sum_probs=165.4

Q ss_pred             ccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCC
Q 040607          264 LTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN  343 (629)
Q Consensus       264 L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  343 (629)
                      ...++.++..++..+ ..-.++++.|++++|.+. .++...+..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVP-DGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCC-SCCCTTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCC-CCCCCCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            445666666655332 233456777777777776 444444455777777777777777666667777777777777777


Q ss_pred             cCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCC-cccCCCCccccCCCcccEEEcccCcCCCCCC
Q 040607          344 HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN-HLEGPIPMEFCQLNFLQILDISKKNIFGSLP  422 (629)
Q Consensus       344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  422 (629)
                      .++...+..|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|++|++++|.+... |
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence            777665566777777777777777776555556667777777777763 33333444566677777777777766533 2


Q ss_pred             CCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607          423 SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP  502 (629)
Q Consensus       423 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  502 (629)
                      . +..        +++|+.|++++|.+++..|..|.++++|+.|+|++|.++++.+..|.++++|++|+|++|+++...+
T Consensus       202 ~-~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          202 N-LTP--------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             C-CTT--------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             c-cCC--------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence            2 222        6677777777777766666667777777777777777777666667777777777777777776666


Q ss_pred             ccccCCCCCCEEEcccCcCcccCC
Q 040607          503 PQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       503 ~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ..|..+++|+.|++++|++.|.+.
T Consensus       273 ~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTTSSCTTCCEEECCSSCEECSST
T ss_pred             hHhccccCCCEEEcCCCCccCCCC
Confidence            666667777777777777776665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=1.9e-29  Score=265.14  Aligned_cols=251  Identities=18%  Similarity=0.168  Sum_probs=170.2

Q ss_pred             ccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCC
Q 040607          264 LTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN  343 (629)
Q Consensus       264 L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  343 (629)
                      ...++.++..++.. |..-.++++.|++++|.+. .++...+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        56 ~~~v~c~~~~l~~i-P~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEV-PQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSC-CSCCCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCcc-CCCCCCCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            34566666665533 2233457777777777777 344444445777777777777777776677777777777777777


Q ss_pred             cCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCC-cccCCCCccccCCCcccEEEcccCcCCCCCC
Q 040607          344 HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN-HLEGPIPMEFCQLNFLQILDISKKNIFGSLP  422 (629)
Q Consensus       344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  422 (629)
                      .++...+..|..+++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|++|++++|.+.+. |
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  212 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P  212 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence            777666666777777777777777777555556777777777777763 34433444567777777777777777543 2


Q ss_pred             CCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607          423 SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP  502 (629)
Q Consensus       423 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  502 (629)
                      . +..        +++|+.|++++|.+++..|..|.++++|+.|+|++|.++++.+..|.++++|++|++++|++++..+
T Consensus       213 ~-~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          213 N-LTP--------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             C-CTT--------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             c-ccc--------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence            1 222        6677777777777776666777777777777777777777767777777777777777777776666


Q ss_pred             ccccCCCCCCEEEcccCcCcccCC
Q 040607          503 PQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       503 ~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ..|..+++|+.|++++|++.|.+.
T Consensus       284 ~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TSSTTCTTCCEEECCSSCEECSTT
T ss_pred             HHhccccCCCEEEccCCCcCCCCC
Confidence            666777777777777777776665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=8.8e-32  Score=284.50  Aligned_cols=381  Identities=16%  Similarity=0.117  Sum_probs=227.4

Q ss_pred             CCCCcEEEcCCCCceeecchh-hhhcCccchhcccceeeccCcccCc----cchhhhcCCCCCCEEEccCCcCCCccCcc
Q 040607           11 LTNLENLTLDNSFFHVSLLQS-IAVFGPWMVQCFIGFRAMDGTALDK----NFLQVIKSMTSLKLLSLSNSRLNGTILDQ   85 (629)
Q Consensus        11 l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~   85 (629)
                      .++|++||++++.+++..... +..+      +.+++|++++|.+++    .++..+..+++|++|++++|.+.+..+..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~------~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~   75 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLL------QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   75 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHH------TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CccceehhhhhcccCchhHHHHHhhc------CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence            357899999999987665443 4444      478999999999885    35777888999999999999987433332


Q ss_pred             ccCCCC----CCcEEEccCCcCccC----CCcccCCCCCCCeeecccccCCcccCc----cccCCCCCCCEEEccCcccc
Q 040607           86 GLCEFV----HLQELHVDHNNLYGV----PPWCLGNMTSLQVLNISSNQLTGNISS----PPLKHLKSIQELKLSNNYFQ  153 (629)
Q Consensus        86 ~~~~l~----~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~i~~----~~l~~l~~L~~L~L~~n~l~  153 (629)
                      .+..++    +|++|++++|+++..    .+..+.++++|++|++++|.+++..+.    ......++|++|++++|.++
T Consensus        76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  155 (461)
T 1z7x_W           76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  155 (461)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence            234455    799999999998753    366789999999999999988632211    11334678999999999887


Q ss_pred             cccC---CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhc-CCCCCCEEEccCCCCCCC-
Q 040607          154 IPIS---LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLY-HQHDLKHVNLSHINLRGE-  228 (629)
Q Consensus       154 ~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~L~~n~l~~~-  228 (629)
                      ....   ...+..+++|++|++++|.+.......                    +...+. ..++|++|++++|.+++. 
T Consensus       156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~--------------------l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRV--------------------LCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH--------------------HHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH--------------------HHHHHhcCCCCceEEEccCCCCcHHH
Confidence            4211   234567789999999999875432110                    111111 233555556655555532 


Q ss_pred             ---CChhHHhcCCCCcEEeccCccccccC-----CCCcccCCCccEEEccCCCCcccc----c--CCCCCCccEEeccCC
Q 040607          229 ---FPNWLSENNTKLQTLVQVNNYLSGIF-----QMPKHARRHLTYLDVSDNFFQVHI----P--VGNMKSLSVLDLSKN  294 (629)
Q Consensus       229 ---~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~L~~n~~~~~~----~--~~~~~~L~~L~L~~n  294 (629)
                         ++..+ ..+++|++|++++|.+....     +..+..+++|++|++++|.++...    +  +..+++|++|++++|
T Consensus       216 ~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          216 CRDLCGIV-ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHH-HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence               22222 34555666666555554321     111223455666666666555421    1  344566666666666


Q ss_pred             CCCcccchhhh----hCCCCCcEEEccCcccccc----cCcccCCCCCCcEEEccCCcCcccCchhhhc-----cccCCc
Q 040607          295 RLIGKIPERLA----MGCFSLRYLVLSNNKMKGH----IFSKKINLTNLWRLQLDGNHFIGEIPESLSN-----CNLFGG  361 (629)
Q Consensus       295 ~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~  361 (629)
                      .+.+..+..+.    ...++|++|++++|.+++.    .+..+..+++|++|++++|.+++..+..+..     .++|++
T Consensus       295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  374 (461)
T 1z7x_W          295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV  374 (461)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence            65533222222    1224666666666666543    2333445566666666666665443333332     456666


Q ss_pred             eeccccccCC----CccccccCCCCCccccCCCCcccCCCCcc----c-cCCCcccEEEcccCcCC
Q 040607          362 LYLSDNHLSG----KIPRWLGNLSVSEDVIMPNNHLEGPIPME----F-CQLNFLQILDISKKNIF  418 (629)
Q Consensus       362 L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~  418 (629)
                      |++++|.+++    .++..+..+++|++|++++|.+++.....    + ....+|+.|++.++...
T Consensus       375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            6666666653    44555556666666666666654321111    1 12335666766666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3e-29  Score=249.63  Aligned_cols=251  Identities=21%  Similarity=0.222  Sum_probs=150.5

Q ss_pred             cEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccccc--CcccCCCCCCcEEEccC
Q 040607          265 TYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI--FSKKINLTNLWRLQLDG  342 (629)
Q Consensus       265 ~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~  342 (629)
                      +.++.+++.++..+. .-.+++++|++++|.+. .+|...+..+++|++|++++|.++...  +..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCC-CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            355666665553322 33356667777776666 566555555666777777666665322  34444566666666666


Q ss_pred             CcCcccCchhhhccccCCceeccccccCCCcc-ccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-C
Q 040607          343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIP-RWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-S  420 (629)
Q Consensus       343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~  420 (629)
                      |.+.. +|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus        88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            66653 44456666666666666666654433 355666666666666666665555566666666666666666544 3


Q ss_pred             CCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCC
Q 040607          421 LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGK  500 (629)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  500 (629)
                      .|..+..        +++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus       167 ~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          167 LPDIFTE--------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             ECSCCTT--------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             chhHHhh--------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            4444444        56666666666666655555666666666666666666665555566666666666666666666


Q ss_pred             CCccccCCC-CCCEEEcccCcCcccCC
Q 040607          501 IPPQLVELN-ALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       501 ~~~~~~~l~-~L~~L~l~~N~l~~~~~  526 (629)
                      .|..+..++ +|+.|++++|++.|.++
T Consensus       239 ~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          239 KKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             SSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CHHHHHhhhccCCEEEccCCCeecccC
Confidence            666666553 66666666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.9e-29  Score=249.77  Aligned_cols=251  Identities=22%  Similarity=0.214  Sum_probs=182.0

Q ss_pred             cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCccc--CchhhhccccCCceec
Q 040607          287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE--IPESLSNCNLFGGLYL  364 (629)
Q Consensus       287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l  364 (629)
                      +.++.+++.++ .+|..+   .+++++|++++|.++...+..|..+++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            45677777776 666644   35777788888777765555677777788888877777633  2556667777888888


Q ss_pred             cccccCCCccccccCCCCCccccCCCCcccCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeee
Q 040607          365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLD  443 (629)
Q Consensus       365 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~  443 (629)
                      ++|.+. .+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..        +++|+.|+
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~  156 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLK  156 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--------CTTCCEEE
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc--------CcCCCEEE
Confidence            877776 455567777778888888777775544 46777777888888877777666666655        67777888


Q ss_pred             cccccCCC-CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607          444 LSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS  522 (629)
Q Consensus       444 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  522 (629)
                      +++|.+++ ..|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            88877764 45667777777888888888777777777777777888888888777666667777777888888888877


Q ss_pred             ccCCCccccc-cccCCCCCCCCCCCCCCCC
Q 040607          523 GKTPDWVAQF-ATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       523 ~~~~~~~~~~-~~l~~l~~~~np~~c~~C~  551 (629)
                      +..|..+..+ .+++.+++++||+.| +|+
T Consensus       237 ~~~~~~~~~~~~~L~~L~L~~N~~~~-~c~  265 (306)
T 2z66_A          237 TSKKQELQHFPSSLAFLNLTQNDFAC-TCE  265 (306)
T ss_dssp             BCSSSSCCCCCTTCCEEECTTCCEEC-SGG
T ss_pred             ccCHHHHHhhhccCCEEEccCCCeec-ccC
Confidence            7777666666 477777788888777 554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.2e-29  Score=253.77  Aligned_cols=278  Identities=18%  Similarity=0.100  Sum_probs=160.9

Q ss_pred             CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEE
Q 040607          237 NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYL  314 (629)
Q Consensus       237 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  314 (629)
                      ++.....+.+++.++.++....   ++|++|++++|.+....+  +..+++|+.|++++|.++ .++...+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEE
Confidence            3444456666666666544222   466777777776665444  566666777777666666 3333333346666666


Q ss_pred             EccCcccccccCcccCCCCCCcEEEccCCcCcccCc-hhhhccccCCceeccccc-cCCCccccccCCCCCccccCCCCc
Q 040607          315 VLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIP-ESLSNCNLFGGLYLSDNH-LSGKIPRWLGNLSVSEDVIMPNNH  392 (629)
Q Consensus       315 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  392 (629)
                      ++++|++++..+..|..+++|++|++++|.++...+ ..+..+++|++|++++|. +....+..+..+++|+.|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            666666665544456666666666666666664333 356666666666666663 444444556666666666666666


Q ss_pred             ccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccc---cccccceEecc
Q 040607          393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG---NLTRIHTLNVS  469 (629)
Q Consensus       393 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls  469 (629)
                      +.+..+..+..+++|++|++++|.+....+..+..        +++|+.|++++|.+++..+..+.   ..+.++.++++
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV--------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhh--------cccccEEECCCCccccccccccccccccchhhccccc
Confidence            66655666666666666666666653322222222        45666666666666543333221   23455566666


Q ss_pred             Ccccccc----ccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          470 HNKLTGL----ILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       470 ~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ++.+++.    .|..+.++++|++|++++|+++...+..|..+++|++|++++|++.|.+|
T Consensus       258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            6655542    34455666666666666666663333334666666666666666666555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.6e-28  Score=240.20  Aligned_cols=248  Identities=18%  Similarity=0.145  Sum_probs=188.7

Q ss_pred             cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccc
Q 040607          287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSD  366 (629)
Q Consensus       287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  366 (629)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45666666666 566543   45777777777777776666777777888888888877777677777778888888887


Q ss_pred             cc-cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecc
Q 040607          367 NH-LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS  445 (629)
Q Consensus       367 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~  445 (629)
                      |. +....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..        +++|+.|+++
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~  161 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------LGNLTHLFLH  161 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc--------CCCccEEECC
Confidence            76 66555677777888888888888887777777888888888888888887766666655        7888888888


Q ss_pred             cccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccC
Q 040607          446 CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKT  525 (629)
Q Consensus       446 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  525 (629)
                      +|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|++.+.+
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            88888655667888888999999999888888888888889999999999888766677888889999999999988776


Q ss_pred             CCccccccccCCCCCCCCCCCC
Q 040607          526 PDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       526 ~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      +.. ..+..++......+.+.|
T Consensus       242 ~~~-~~~~~l~~~~~~~~~~~c  262 (285)
T 1ozn_A          242 RAR-PLWAWLQKFRGSSSEVPC  262 (285)
T ss_dssp             GGH-HHHHHHHHCCSEECCCBE
T ss_pred             CcH-HHHHHHHhcccccCcccc
Confidence            631 222334445556666644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.6e-30  Score=283.98  Aligned_cols=433  Identities=11%  Similarity=0.020  Sum_probs=251.4

Q ss_pred             cchhhhcCCCCCCEEEccCCcCC---CccCcc-----------ccCCCCCCcEEEccCCcCccCCCcccCC-CCC-CCee
Q 040607           57 NFLQVIKSMTSLKLLSLSNSRLN---GTILDQ-----------GLCEFVHLQELHVDHNNLYGVPPWCLGN-MTS-LQVL  120 (629)
Q Consensus        57 ~~~~~l~~l~~L~~L~Ls~n~l~---~~i~~~-----------~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L  120 (629)
                      ..+..+..+++|++|+++++...   +.+|..           .+..+++|++|+|++|.+++..+..+.. ++. |++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            34455667788888888775421   112210           1115677777777777665544444444 333 7777


Q ss_pred             eccccc-CCc-ccCccccCCCCCCCEEEccCcccccccC---CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEE
Q 040607          121 NISSNQ-LTG-NISSPPLKHLKSIQELKLSNNYFQIPIS---LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSI  195 (629)
Q Consensus       121 ~L~~n~-l~~-~i~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  195 (629)
                      ++++|. ++. .++. ....+++|++|++++|.+++...   ...+..+++|+.|++++|.+.....             
T Consensus       144 ~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~-------------  209 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-------------  209 (592)
T ss_dssp             EEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-------------
T ss_pred             ECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-------------
Confidence            777765 210 1111 23356777777777776652210   0123456677777777666532110             


Q ss_pred             EeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccc---ccCCCCcccCCCccEEEccCC
Q 040607          196 ILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLS---GIFQMPKHARRHLTYLDVSDN  272 (629)
Q Consensus       196 ~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~L~~n  272 (629)
                             ..++..+..+++|++|++++|.+.+ ++.. +..+++|+.|.++.....   ......+..+++|+.++++++
T Consensus       210 -------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  280 (592)
T 3ogk_B          210 -------KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM  280 (592)
T ss_dssp             -------HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC
T ss_pred             -------HHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc
Confidence                   1234555667788888888887763 5544 367788888888753222   122345566777888888775


Q ss_pred             CCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccC---------
Q 040607          273 FFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDG---------  342 (629)
Q Consensus       273 ~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~---------  342 (629)
                      ....... +..+++|++|++++|.+++.....+...+++|++|+++++-.....+..+..+++|++|++++         
T Consensus       281 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~  360 (592)
T 3ogk_B          281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED  360 (592)
T ss_dssp             CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred             chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence            4333222 556778888888888766544444455678888888873322222233335677788888883         


Q ss_pred             --CcCcccC-chhhhccccCCceeccccccCCCccccccC-CCCCccccCC----CCcccCC-----CCccccCCCcccE
Q 040607          343 --NHFIGEI-PESLSNCNLFGGLYLSDNHLSGKIPRWLGN-LSVSEDVIMP----NNHLEGP-----IPMEFCQLNFLQI  409 (629)
Q Consensus       343 --n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~  409 (629)
                        +.++... +.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|++
T Consensus       361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~  440 (592)
T 3ogk_B          361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR  440 (592)
T ss_dssp             TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence              3444332 223455788888888777776555555544 7777777775    4555543     2223556777888


Q ss_pred             EEcccCc--CCCCCCCCcCCCccccCCCccCCCeeecccccCCC-CCccccccccccceEeccCccccccc-cccccCCC
Q 040607          410 LDISKKN--IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLTGLI-LSTFSNLK  485 (629)
Q Consensus       410 L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~  485 (629)
                      |++++|.  +.+..+..+.       ..+++|+.|++++|++++ ..+..+.++++|++|++++|.+++.. +..+..++
T Consensus       441 L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  513 (592)
T 3ogk_B          441 FAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP  513 (592)
T ss_dssp             EEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred             EEEecCCCCccHHHHHHHH-------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence            8876533  3322222211       115677777777777764 23344566777888888877776442 33345677


Q ss_pred             CCCEEECcCCcCCCCCCccc-cCCCCCCEEEcccC
Q 040607          486 QTESLDLSYNKLTGKIPPQL-VELNALAVFSVAHN  519 (629)
Q Consensus       486 ~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N  519 (629)
                      +|++|++++|+++......+ ..+|.++...+..+
T Consensus       514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            77788888777764433322 34566655555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=249.55  Aligned_cols=251  Identities=22%  Similarity=0.271  Sum_probs=200.8

Q ss_pred             ccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecc
Q 040607          286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS  365 (629)
Q Consensus       286 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  365 (629)
                      ...++.++..++ .+|..+.   ++++.|++++|++....+..|..+++|+.|++++|.++...+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456777777777 7777553   578888888888888777888888888888888888887777888888888888888


Q ss_pred             ccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-CCCCCcCCCccccCCCccCCCeeec
Q 040607          366 DNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDL  444 (629)
Q Consensus       366 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L  444 (629)
                      +|.++...+..|..+++|+.|++++|.+....+..|..+++|++|++++|+..+ ..+..+..        +++|+.|++
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L  192 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--------LSNLRYLNL  192 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CSSCCEEEC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc--------ccccCeecC
Confidence            888886666678888888888888888887777778888888888888854433 33345554        788888888


Q ss_pred             ccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607          445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK  524 (629)
Q Consensus       445 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  524 (629)
                      ++|.++ .+| .+..+++|++|+|++|.++++.+..|.++++|++|++++|++++..+..|..+++|+.|++++|+++..
T Consensus       193 ~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          193 AMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             TTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             CCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            888887 444 467788888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             CCCccccccccCCCCCCCCCCCCCCCC
Q 040607          525 TPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       525 ~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      .+..+..+.+++.+++++|||.| +|.
T Consensus       271 ~~~~~~~l~~L~~L~L~~Np~~C-dC~  296 (440)
T 3zyj_A          271 PHDLFTPLHHLERIHLHHNPWNC-NCD  296 (440)
T ss_dssp             CTTTTSSCTTCCEEECCSSCEEC-SST
T ss_pred             ChhHhccccCCCEEEcCCCCccC-CCC
Confidence            77777778888888888888888 554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.6e-27  Score=248.86  Aligned_cols=251  Identities=20%  Similarity=0.230  Sum_probs=203.0

Q ss_pred             ccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecc
Q 040607          286 LSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS  365 (629)
Q Consensus       286 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  365 (629)
                      ...++.++..++ .+|..+   .+++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456777777777 677654   3578888888888888888888888888888888888888777888888888888888


Q ss_pred             ccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCC-CCCCCcCCCccccCCCccCCCeeec
Q 040607          366 DNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFG-SLPSCFNPFSIKQGKPLNSMSGLDL  444 (629)
Q Consensus       366 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~L  444 (629)
                      +|.+....+..|..+++|+.|++++|.+....+..|..+++|++|++++|+..+ ..+..+..        +++|+.|++
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------l~~L~~L~L  203 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG--------LFNLKYLNL  203 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT--------CTTCCEEEC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC--------CCCCCEEEC
Confidence            888887666778888888888888888887777778888888888888854433 33344544        788888888


Q ss_pred             ccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607          445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK  524 (629)
Q Consensus       445 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  524 (629)
                      ++|.+++ +| .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++..|..|..+++|+.|++++|++++.
T Consensus       204 ~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          204 GMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             TTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence            8888873 34 477788888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             CCCccccccccCCCCCCCCCCCCCCCC
Q 040607          525 TPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       525 ~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      .+..+..+.+++.+++++|||.| +|.
T Consensus       282 ~~~~~~~l~~L~~L~L~~Np~~C-dC~  307 (452)
T 3zyi_A          282 PHDLFTPLRYLVELHLHHNPWNC-DCD  307 (452)
T ss_dssp             CTTSSTTCTTCCEEECCSSCEEC-STT
T ss_pred             ChHHhccccCCCEEEccCCCcCC-CCC
Confidence            77777788888888888888888 564

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.5e-27  Score=234.80  Aligned_cols=267  Identities=20%  Similarity=0.202  Sum_probs=214.1

Q ss_pred             cEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCc
Q 040607          265 TYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH  344 (629)
Q Consensus       265 ~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  344 (629)
                      +.++.+++.+... |....+++++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~i-p~~~~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSC-CTTCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccC-CcCCCCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            4566666666533 3344568888888888887 5565555568889999999998888878888888999999999997


Q ss_pred             -CcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC
Q 040607          345 -FIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS  423 (629)
Q Consensus       345 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  423 (629)
                       +....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence             7766678888899999999999998877788888899999999999999877777789999999999999999877777


Q ss_pred             CcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCc
Q 040607          424 CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP  503 (629)
Q Consensus       424 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  503 (629)
                      .+..        +++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++..|..+++|++|++++|++....+.
T Consensus       172 ~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          172 AFRG--------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTTT--------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             HhcC--------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            7766        89999999999999977788999999999999999999998888899999999999999999743332


Q ss_pred             cccCCCCCCEEEcccCcCcccCCCcccc--ccccCCCCCCC
Q 040607          504 QLVELNALAVFSVAHNKLSGKTPDWVAQ--FATFNGSSYDG  542 (629)
Q Consensus       504 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~l~~~~  542 (629)
                      . .-...++.+..+.+.+.|..|..+..  +..++..++.|
T Consensus       244 ~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~  283 (285)
T 1ozn_A          244 R-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG  283 (285)
T ss_dssp             H-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred             H-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhcc
Confidence            1 11123455567888999988876544  34555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.1e-30  Score=281.65  Aligned_cols=438  Identities=13%  Similarity=0.047  Sum_probs=232.9

Q ss_pred             ccCCCCCcEEEcCCCCce---eecchhhhhcCc------cchhcccceeeccCcccCccchhhhcC-CC-CCCEEEccCC
Q 040607            8 LHNLTNLENLTLDNSFFH---VSLLQSIAVFGP------WMVQCFIGFRAMDGTALDKNFLQVIKS-MT-SLKLLSLSNS   76 (629)
Q Consensus         8 l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~------~~~~~~l~~L~l~~~~~~~~~~~~l~~-l~-~L~~L~Ls~n   76 (629)
                      +..+++|++|++++|...   +.+|..+..+..      ..-...|++|+|++|.+++..+..+.. ++ +|++|+|++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            356888999999887421   111211110000      001146788888888888777766665 33 4888888887


Q ss_pred             c-CCCccCccccCCCCCCcEEEccCCcCccCCCc----ccCCCCCCCeeecccccCC----cccCccccCCCCCCCEEEc
Q 040607           77 R-LNGTILDQGLCEFVHLQELHVDHNNLYGVPPW----CLGNMTSLQVLNISSNQLT----GNISSPPLKHLKSIQELKL  147 (629)
Q Consensus        77 ~-l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~----~~i~~~~l~~l~~L~~L~L  147 (629)
                      . ++..........+++|++|+|++|.+++....    .+.++++|++|++++|.++    +.++. .+.++++|++|++
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L  227 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKV  227 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEEC
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEec
Confidence            6 22111111234678888888888887665432    3456788888888888876    12222 4567788888888


Q ss_pred             cCcccccccCCcccCCCCCCcEEECCCCccee--ecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCC
Q 040607          148 SNNYFQIPISLGPLYNHSNLKIFDSENNQIYA--QTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINL  225 (629)
Q Consensus       148 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l  225 (629)
                      ++|.+.+ ++ ..+..+++|+.|+++......  ......+..+.+|+.+.+.......+|..+..+++|++|++++|.+
T Consensus       228 ~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          228 GDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             SSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             cCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            8887763 33 457778888888887532110  1111223344566666666555555566666666666666666665


Q ss_pred             CCCCChhHHhcCCCCcEEeccCcccccc-CCCCcccCCCccEEEccCC---CCcccccCCCCCCccEEeccCCCCCcccc
Q 040607          226 RGEFPNWLSENNTKLQTLVQVNNYLSGI-FQMPKHARRHLTYLDVSDN---FFQVHIPVGNMKSLSVLDLSKNRLIGKIP  301 (629)
Q Consensus       226 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  301 (629)
                      ++.....+...+++|+.|++++ .+... .+.....+++|++|++++.   .....              ..+.+++...
T Consensus       306 ~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~--------------~~~~~~~~~~  370 (592)
T 3ogk_B          306 ETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMED--------------EEGLVSQRGL  370 (592)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS--------------TTCCCCHHHH
T ss_pred             CHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCcccccccc--------------ccCccCHHHH
Confidence            4333323334556666665552 22211 1111223344444444410   00000              0123332222


Q ss_pred             hhhhhCCCCCcEEEccCcccccccCcccCC-CCCCcEEEcc----CCcCccc-----CchhhhccccCCceeccccc--c
Q 040607          302 ERLAMGCFSLRYLVLSNNKMKGHIFSKKIN-LTNLWRLQLD----GNHFIGE-----IPESLSNCNLFGGLYLSDNH--L  369 (629)
Q Consensus       302 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l  369 (629)
                      ..+...+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|+.|++++|.  +
T Consensus       371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l  450 (592)
T 3ogk_B          371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL  450 (592)
T ss_dssp             HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred             HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence            222333555555555555555443333332 5555555554    3344432     22334556666666665322  3


Q ss_pred             CCCccccc-cCCCCCccccCCCCcccCC-CCccccCCCcccEEEcccCcCCCCCC-CCcCCCccccCCCccCCCeeeccc
Q 040607          370 SGKIPRWL-GNLSVSEDVIMPNNHLEGP-IPMEFCQLNFLQILDISKKNIFGSLP-SCFNPFSIKQGKPLNSMSGLDLSC  446 (629)
Q Consensus       370 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~  446 (629)
                      ++..+..+ ..+++|+.|++++|.+++. .+..+..+++|++|++++|++++... .....        +++|+.|++++
T Consensus       451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--------l~~L~~L~ls~  522 (592)
T 3ogk_B          451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK--------LPSLRYLWVQG  522 (592)
T ss_dssp             CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH--------CSSCCEEEEES
T ss_pred             cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh--------cCccCeeECcC
Confidence            32222222 2356666666666665542 23344566777777777777543211 11122        67778888888


Q ss_pred             ccCCCCCcccc-ccccccceEeccCc
Q 040607          447 NKLTGEIPLRI-GNLTRIHTLNVSHN  471 (629)
Q Consensus       447 n~l~~~~~~~~-~~l~~L~~L~Ls~n  471 (629)
                      |++++.....+ ..++.+....+..+
T Consensus       523 n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          523 YRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            87764433323 34566666555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=247.66  Aligned_cols=280  Identities=18%  Similarity=0.139  Sum_probs=222.7

Q ss_pred             CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEe
Q 040607          213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLD  290 (629)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~  290 (629)
                      +.....+.+++.++ .+|..++   +++++|++++|.++.+.+..+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        31 ~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            33455777778777 6676542   578888888888888887788888889999999888887655  78888999999


Q ss_pred             ccCCCCCcccchhhhhCCCCCcEEEccCcccccccC-cccCCCCCCcEEEccCC-cCcccCchhhhccccCCceeccccc
Q 040607          291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF-SKKINLTNLWRLQLDGN-HFIGEIPESLSNCNLFGGLYLSDNH  368 (629)
Q Consensus       291 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~  368 (629)
                      +++|.++ .++...+..+++|++|++++|+++...+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus       107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            9999888 6777766678899999999998886555 57888999999999988 4666667788889999999999999


Q ss_pred             cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeeccccc
Q 040607          369 LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK  448 (629)
Q Consensus       369 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  448 (629)
                      +.+..|..+..+++|+.|++++|.+.......+..+++|++|++++|.+.+..+..+..     ......++.++++++.
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-----GETNSLIKKFTFRNVK  260 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------CCCCCCEEEEESCB
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-----ccccchhhcccccccc
Confidence            88777888888999999999999886544444556889999999999987766554432     1225667788888887


Q ss_pred             CCC----CCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC
Q 040607          449 LTG----EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP  502 (629)
Q Consensus       449 l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  502 (629)
                      +.+    .+|..+..+++|++|++++|+++.+++..|.++++|++|++++|++++..|
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            764    367788899999999999999998777778999999999999999986443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.9e-27  Score=234.59  Aligned_cols=225  Identities=17%  Similarity=0.196  Sum_probs=140.6

Q ss_pred             CCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCce
Q 040607          283 MKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL  362 (629)
Q Consensus       283 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  362 (629)
                      .++++.|++++|.+. .+|..++. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            456777777777777 67776665 778888888888777 66677777888888888888777 567777788888888


Q ss_pred             eccccccCCCccccccC---------CCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccC
Q 040607          363 YLSDNHLSGKIPRWLGN---------LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG  433 (629)
Q Consensus       363 ~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  433 (629)
                      ++++|.+.+.+|..+..         +++|+.|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..      
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------  227 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH------  227 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG------
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc------
Confidence            88887776666665443         555555555555555 444455555555555555555543 2223333      


Q ss_pred             CCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCE
Q 040607          434 KPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAV  513 (629)
Q Consensus       434 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  513 (629)
                        +++|+.|++++|.+.+.+|..+..+++|++|+|++|++.+..|..+.++++|++|++++|++.+.+|+.+..+++|+.
T Consensus       228 --l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          228 --LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             --CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             --CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence              455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             EEcccCcC
Q 040607          514 FSVAHNKL  521 (629)
Q Consensus       514 L~l~~N~l  521 (629)
                      +++..|.+
T Consensus       306 l~l~~~~~  313 (328)
T 4fcg_A          306 ILVPPHLQ  313 (328)
T ss_dssp             EECCGGGS
T ss_pred             EeCCHHHH
Confidence            55554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.2e-27  Score=233.96  Aligned_cols=225  Identities=16%  Similarity=0.179  Sum_probs=206.8

Q ss_pred             CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcccc
Q 040607          308 CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI  387 (629)
Q Consensus       308 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  387 (629)
                      .+.+++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            578999999999998 56777888999999999999999 78889999999999999999999 7788999999999999


Q ss_pred             CCCCcccCCCCccccC---------CCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccc
Q 040607          388 MPNNHLEGPIPMEFCQ---------LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG  458 (629)
Q Consensus       388 l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  458 (629)
                      +++|.+.+.+|..+..         +++|++|++++|.+. .+|..+..        +++|+.|++++|.++ .+|..+.
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~--------l~~L~~L~L~~N~l~-~l~~~l~  226 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN--------LQNLKSLKIRNSPLS-ALGPAIH  226 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG--------CTTCCEEEEESSCCC-CCCGGGG
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC--------CCCCCEEEccCCCCC-cCchhhc
Confidence            9999888888877654         999999999999997 66777766        899999999999999 5666899


Q ss_pred             cccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCC
Q 040607          459 NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGS  538 (629)
Q Consensus       459 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l  538 (629)
                      .+++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++..++++..+
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCC
Q 040607          539 SYDGNPF  545 (629)
Q Consensus       539 ~~~~np~  545 (629)
                      .+..+..
T Consensus       307 ~l~~~~~  313 (328)
T 4fcg_A          307 LVPPHLQ  313 (328)
T ss_dssp             ECCGGGS
T ss_pred             eCCHHHH
Confidence            8876654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2e-25  Score=240.24  Aligned_cols=268  Identities=23%  Similarity=0.247  Sum_probs=209.9

Q ss_pred             CCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccC
Q 040607          214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSK  293 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~  293 (629)
                      +++.|++++|.++ .+|..++   ++|+.|++++|.++.++.    .+++|++|++++|+++....  .+++|++|++++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence            5788888888887 6666542   678888888888876554    46788888888888775444  678888888888


Q ss_pred             CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCc
Q 040607          294 NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKI  373 (629)
Q Consensus       294 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  373 (629)
                      |.+. .+|.    .+++|++|++++|+++.. |.   .+++|++|++++|.+++. |.   .+++|+.|++++|.++. +
T Consensus       111 N~l~-~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l  176 (622)
T 3g06_A          111 NPLT-HLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L  176 (622)
T ss_dssp             CCCC-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-C
T ss_pred             CcCC-CCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-C
Confidence            8887 5665    367888999999888853 33   247889999999988753 33   34678889999998885 4


Q ss_pred             cccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCC
Q 040607          374 PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEI  453 (629)
Q Consensus       374 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  453 (629)
                      |   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.+... |..           +++|+.|++++|.+++ +
T Consensus       177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~~-----------~~~L~~L~Ls~N~L~~-l  236 (622)
T 3g06_A          177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PAL-----------PSGLKELIVSGNRLTS-L  236 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CCC-----------CTTCCEEECCSSCCSC-C
T ss_pred             c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CCC-----------CCCCCEEEccCCccCc-C
Confidence            4   446889999999999885 333   247899999999988653 321           5789999999999984 5


Q ss_pred             ccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCcccccc
Q 040607          454 PLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFA  533 (629)
Q Consensus       454 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  533 (629)
                      |   ..+++|+.|+|++|.++++++    .+++|+.|++++|+|+ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus       237 p---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          237 P---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             C---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            5   456899999999999997654    5789999999999999 7788999999999999999999988887665554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.1e-27  Score=235.88  Aligned_cols=256  Identities=19%  Similarity=0.143  Sum_probs=194.2

Q ss_pred             ccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEcc
Q 040607          264 LTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLD  341 (629)
Q Consensus       264 L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  341 (629)
                      ++..+++.+.+.....  +..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            3344555555543332  455677888888888887 4444444558888888888888876554  7788888888888


Q ss_pred             CCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCC
Q 040607          342 GNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL  421 (629)
Q Consensus       342 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  421 (629)
                      +|.+++..     ..++|++|++++|.+.+..+..   +++|+.|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            88876432     3478888888888887554433   577888999999888777778888899999999999887766


Q ss_pred             CCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCC
Q 040607          422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI  501 (629)
Q Consensus       422 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  501 (629)
                      +..+..       .+++|+.|++++|.+++. +. ...+++|++|+|++|.++++++. |..+++|++|++++|+++ .+
T Consensus       161 ~~~~~~-------~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l  229 (317)
T 3o53_A          161 FAELAA-------SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LI  229 (317)
T ss_dssp             GGGGGG-------GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EE
T ss_pred             HHHHhh-------ccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-ch
Confidence            665531       168899999999998844 32 33589999999999999876554 888999999999999998 56


Q ss_pred             CccccCCCCCCEEEcccCcCc-ccCCCccccccccCCCCCC
Q 040607          502 PPQLVELNALAVFSVAHNKLS-GKTPDWVAQFATFNGSSYD  541 (629)
Q Consensus       502 ~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~~~  541 (629)
                      |..+..+++|+.|++++|++. +..|.++..+++++.+++.
T Consensus       230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            778888999999999999998 5566777777777777776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=8.1e-27  Score=246.32  Aligned_cols=247  Identities=19%  Similarity=0.134  Sum_probs=204.1

Q ss_pred             CCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCC
Q 040607          281 GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG  360 (629)
Q Consensus       281 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  360 (629)
                      ..+++|+.|++++|.+.+ ++...+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..     ..++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~  102 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE  102 (487)
T ss_dssp             TTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred             ccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence            345689999999999884 444444568999999999999887665  888999999999999887543     337899


Q ss_pred             ceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcC-CCccccCCCccCC
Q 040607          361 GLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFN-PFSIKQGKPLNSM  439 (629)
Q Consensus       361 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~~~~~~L  439 (629)
                      .|++++|.+.+..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..|..+. .        +++|
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~--------l~~L  171 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS--------SDTL  171 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG--------TTTC
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh--------CCcc
Confidence            999999998866554   357899999999999988888899999999999999999887777664 3        7899


Q ss_pred             CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607          440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  519 (629)
                      +.|+|++|.+++. + ....+++|+.|+|++|.++++++. |..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus       172 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          172 EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred             cEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence            9999999999854 3 234689999999999999987665 8899999999999999994 6778899999999999999


Q ss_pred             cCc-ccCCCccccccccCCCCCC-------CCCCCCCCCC
Q 040607          520 KLS-GKTPDWVAQFATFNGSSYD-------GNPFLSSSCN  551 (629)
Q Consensus       520 ~l~-~~~~~~~~~~~~l~~l~~~-------~np~~c~~C~  551 (629)
                      ++. +..|.++..++.+..+++.       ++|+.| .|.
T Consensus       248 ~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c-~~~  286 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC-TVP  286 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCC-SST
T ss_pred             CCcCcchHHHHHhCCCCcEEeccccccccCCCcccc-cCC
Confidence            998 4555667777777777765       889988 664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-24  Score=234.37  Aligned_cols=263  Identities=21%  Similarity=0.235  Sum_probs=133.1

Q ss_pred             cceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecc
Q 040607           44 IGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS  123 (629)
Q Consensus        44 l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~  123 (629)
                      +++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|+|++|+++++++    .+++|++|+++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence            556666666666 4454443  56677777776666 5554    34566777777776665544    45666777777


Q ss_pred             cccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCC
Q 040607          124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGV  203 (629)
Q Consensus       124 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  203 (629)
                      +|.++ .+|.    .+++|++|++++|.++ .++.    .+++|++|++++|.+.....     ...+|+.|+++++...
T Consensus       110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          110 SNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             SCCCC-CCCC----CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCS
T ss_pred             CCcCC-CCCC----CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCcCC-----ccCCCCEEECCCCCCC
Confidence            76666 4543    4466667777666665 2332    23666666666666543211     1123333333333333


Q ss_pred             CcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCC
Q 040607          204 TFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNM  283 (629)
Q Consensus       204 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  283 (629)
                      .+|   ..+++|+.|++++|+++ .+|.    ..++|+.|++++|.++.++.                          .+
T Consensus       175 ~l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~--------------------------~~  220 (622)
T 3g06_A          175 SLP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTSLPA--------------------------LP  220 (622)
T ss_dssp             CCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCC--------------------------CC
T ss_pred             CCc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccccCC--------------------------CC
Confidence            333   22344555555555544 2221    12444444444444443321                          12


Q ss_pred             CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607          284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY  363 (629)
Q Consensus       284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  363 (629)
                      ++|+.|++++|.++ .+|    ..+++|++|++++|.++.. |.   .+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus       221 ~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            44555555555544 233    1234555555555555422 22   3344555555555554 3344455555555555


Q ss_pred             ccccccCCCccccc
Q 040607          364 LSDNHLSGKIPRWL  377 (629)
Q Consensus       364 l~~n~l~~~~~~~~  377 (629)
                      +++|.+++..|..+
T Consensus       291 L~~N~l~~~~~~~l  304 (622)
T 3g06_A          291 LEGNPLSERTLQAL  304 (622)
T ss_dssp             CCSCCCCHHHHHHH
T ss_pred             ecCCCCCCcCHHHH
Confidence            55555544444333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.8e-25  Score=218.63  Aligned_cols=226  Identities=20%  Similarity=0.216  Sum_probs=170.5

Q ss_pred             EeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccc
Q 040607          289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNH  368 (629)
Q Consensus       289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  368 (629)
                      .+..+..+. .+|..+   .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            344444444 555543   2467777777777776666677777777777777777776666677777777777777777


Q ss_pred             cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCC-CCCCcCCCccccCCCccCCCeeecccc
Q 040607          369 LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS-LPSCFNPFSIKQGKPLNSMSGLDLSCN  447 (629)
Q Consensus       369 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~n  447 (629)
                      +.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+..        +++|+.|++++|
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~--------l~~L~~L~Ls~N  159 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN--------LTNLEHLDLSSN  159 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG--------CTTCCEEECCSS
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc--------CCCCCEEECCCC
Confidence            7766666777777777777777777766666677888888888888888664 4666665        788888888888


Q ss_pred             cCCCCCccccccccccc----eEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 040607          448 KLTGEIPLRIGNLTRIH----TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG  523 (629)
Q Consensus       448 ~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  523 (629)
                      .+++..+..+..+++|+    .|++++|.++++++..+.. .+|++|++++|++++..+..|..+++|+.|++++|++.|
T Consensus       160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            88866667777777777    8899999998877766654 479999999999987777777888999999999999998


Q ss_pred             cCCC
Q 040607          524 KTPD  527 (629)
Q Consensus       524 ~~~~  527 (629)
                      .++.
T Consensus       239 ~c~~  242 (276)
T 2z62_A          239 SCPR  242 (276)
T ss_dssp             CTTT
T ss_pred             cCCc
Confidence            8873

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=4e-25  Score=215.23  Aligned_cols=207  Identities=21%  Similarity=0.225  Sum_probs=142.9

Q ss_pred             CCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccC
Q 040607          309 FSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIM  388 (629)
Q Consensus       309 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  388 (629)
                      ...+.++++++.++. +|..+.  ++++.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            356788888888874 444332  56888888888887666667777888888888888777555555667777777777


Q ss_pred             CCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEec
Q 040607          389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV  468 (629)
Q Consensus       389 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  468 (629)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..+..        +++|+.|++++|.+++..+..|..+++|++|++
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------CcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            777777666666677777777777777776666655544        667777777777766555555666677777777


Q ss_pred             cCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       469 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ++|.++++++..|.++++|++|++++|++++..+..|..+++|+.|++++|++.+.++
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            7777766666666666777777777777765555556666677777777777666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.2e-27  Score=232.69  Aligned_cols=210  Identities=18%  Similarity=0.113  Sum_probs=133.7

Q ss_pred             ccCCCCCcEEEcCCCCceeecchhhhhcCccchhcccceeeccCccc-Cccchhhhc-------CCCCCCEEEccCCcCC
Q 040607            8 LHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTAL-DKNFLQVIK-------SMTSLKLLSLSNSRLN   79 (629)
Q Consensus         8 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~-~~~~~~~l~-------~l~~L~~L~Ls~n~l~   79 (629)
                      ++..++|++|++++|.+  .+|..+.        ..+++|++++|.+ ...+|..+.       ++++|++|+|++|.++
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~--------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  108 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFT--------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT  108 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHH--------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred             EccCCCceeEeeccccc--ccHHHHH--------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence            35567788888888877  5555432        3477888888888 345666555       7888888888888887


Q ss_pred             CccCcccc-CCCCCCcEEEccCCcCccCCCcccCCC-----CCCCeeecccccCCcccCccccCCCCCCCEEEccCcccc
Q 040607           80 GTILDQGL-CEFVHLQELHVDHNNLYGVPPWCLGNM-----TSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQ  153 (629)
Q Consensus        80 ~~i~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  153 (629)
                      +.+|...| ..+++|++|++++|+++++ |..+.++     ++|++|++++|.++ .++...++++++|++|++++|.+.
T Consensus       109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          109 GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcC
Confidence            66776332 7788888888888888877 5566655     78888888888887 555457888888888888888765


Q ss_pred             cccC---CcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcC-hhhcCCCCCCEEEccCCCCCCCC
Q 040607          154 IPIS---LGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP-KFLYHQHDLKHVNLSHINLRGEF  229 (629)
Q Consensus       154 ~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~L~~n~l~~~~  229 (629)
                      +..+   ...+..+++|++|++++|.+.....                      ++ ..+..+++|++|++++|++.+..
T Consensus       187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          187 GERGLISALCPLKFPTLQVLALRNAGMETPSG----------------------VCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH----------------------HHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             cchHHHHHHHhccCCCCCEEECCCCcCcchHH----------------------HHHHHHhcCCCCCEEECCCCcCCccc
Confidence            3211   1123566666666666666532111                      11 22334556666666666665444


Q ss_pred             ChhHHhcCCCCcEEeccCcccc
Q 040607          230 PNWLSENNTKLQTLVQVNNYLS  251 (629)
Q Consensus       230 ~~~~~~~~~~L~~L~l~~n~~~  251 (629)
                      |...+..+++|+.|++++|.++
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCS
T ss_pred             chhhhhhcCCCCEEECCCCccC
Confidence            3222233444555555555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.7e-25  Score=218.82  Aligned_cols=226  Identities=20%  Similarity=0.165  Sum_probs=197.1

Q ss_pred             EEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCc
Q 040607          313 YLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH  392 (629)
Q Consensus       313 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  392 (629)
                      ..+..+..+.. +|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus        11 ~~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            45556666653 444442  579999999999998888899999999999999999997777789999999999999999


Q ss_pred             ccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCC-CccccccccccceEeccCc
Q 040607          393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE-IPLRIGNLTRIHTLNVSHN  471 (629)
Q Consensus       393 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n  471 (629)
                      +.+..+..+..+++|++|++++|.+.+..+..+..        +++|+.|++++|.+++. +|..+..+++|++|++++|
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT--------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhccc--------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            99888889999999999999999998877767766        89999999999999863 5889999999999999999


Q ss_pred             cccccccccccCCCCCC----EEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          472 KLTGLILSTFSNLKQTE----SLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       472 ~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      ++++..+..|..+++|+    +|++++|.+++..+..+.. .+|+.|++++|++++..+..+..+++++.+++++||+.|
T Consensus       160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            99998888888777777    9999999999766665544 589999999999998877778889999999999999999


Q ss_pred             CCCC
Q 040607          548 SSCN  551 (629)
Q Consensus       548 ~~C~  551 (629)
                       +|+
T Consensus       239 -~c~  241 (276)
T 2z62_A          239 -SCP  241 (276)
T ss_dssp             -CTT
T ss_pred             -cCC
Confidence             775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=7.3e-29  Score=270.93  Aligned_cols=116  Identities=12%  Similarity=0.107  Sum_probs=62.2

Q ss_pred             hhhcCCCCCCEEEccCCcCCCccC---c-----------cccCCCCCCcEEEccCCcCccCCCcccC-CCCCCCeeeccc
Q 040607           60 QVIKSMTSLKLLSLSNSRLNGTIL---D-----------QGLCEFVHLQELHVDHNNLYGVPPWCLG-NMTSLQVLNISS  124 (629)
Q Consensus        60 ~~l~~l~~L~~L~Ls~n~l~~~i~---~-----------~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~  124 (629)
                      ..+..+++|++|+++++....++.   .           ..+..+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            345567777777777765221111   0           0123456677777777766554444443 466777777776


Q ss_pred             c-cCCcc-cCccccCCCCCCCEEEccCcccccccC---CcccCCCCCCcEEECCCCc
Q 040607          125 N-QLTGN-ISSPPLKHLKSIQELKLSNNYFQIPIS---LGPLYNHSNLKIFDSENNQ  176 (629)
Q Consensus       125 n-~l~~~-i~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~  176 (629)
                      | .+++. ++. .+.++++|++|++++|.+++...   ......+++|+.|++++|.
T Consensus       140 ~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          140 CEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             cCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            6 33311 222 33456777777777776552111   0112255566666666664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.6e-27  Score=237.44  Aligned_cols=247  Identities=20%  Similarity=0.186  Sum_probs=128.1

Q ss_pred             cCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCC-cccchhhh------hCCCCCcEEEccCcccccccCccc--C
Q 040607          260 ARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLI-GKIPERLA------MGCFSLRYLVLSNNKMKGHIFSKK--I  330 (629)
Q Consensus       260 ~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~------~~~~~L~~L~L~~n~l~~~~~~~~--~  330 (629)
                      ..++|+.+++++|.+  ..|..-...|+.|++++|.+. ..++....      ..+++|++|++++|++++..|..+  .
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             cCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            345566677777766  222111112667777777663 23444332      136677777777777766666554  6


Q ss_pred             CCCCCcEEEccCCcCcccCchhhhcc-----ccCCceeccccccCCCccccccCCCCCccccCCCCcccCC--CCccc--
Q 040607          331 NLTNLWRLQLDGNHFIGEIPESLSNC-----NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP--IPMEF--  401 (629)
Q Consensus       331 ~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--  401 (629)
                      .+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.  .+..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            667777777777777655 5556555     6666666666666655555566666666666666654432  11112  


Q ss_pred             cCCCcccEEEcccCcCCCCC--C-CCcCCCccccCCCccCCCeeecccccCCCCCc-cccccccccceEeccCccccccc
Q 040607          402 CQLNFLQILDISKKNIFGSL--P-SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP-LRIGNLTRIHTLNVSHNKLTGLI  477 (629)
Q Consensus       402 ~~l~~L~~L~l~~n~l~~~~--~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~  477 (629)
                      ..+++|++|++++|.+.+..  + ..+..        +++|+.|++++|.+++..| ..+..+++|++|+|++|.++.+ 
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-  268 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAA--------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-  268 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHT--------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhc--------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-
Confidence            45555555555555553210  0 11111        3455555555555543332 2333345555555555555432 


Q ss_pred             cccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCc
Q 040607          478 LSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLS  522 (629)
Q Consensus       478 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  522 (629)
                      |..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       269 p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          269 PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            22222  4455555555555433 33 444555555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=230.23  Aligned_cols=240  Identities=17%  Similarity=0.111  Sum_probs=205.8

Q ss_pred             CccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceec
Q 040607          285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYL  364 (629)
Q Consensus       285 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  364 (629)
                      +++..+++.+.+. ..+..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            4566788888776 5666677778899999999999998888899999999999999999986654  889999999999


Q ss_pred             cccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeec
Q 040607          365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDL  444 (629)
Q Consensus       365 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L  444 (629)
                      ++|.+.+..     ..++|+.|++++|.+.+..+.   .+++|++|++++|.+.+..+..+..        +++|+.|++
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~--------l~~L~~L~L  151 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC--------RSRVQYLDL  151 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGG--------GSSEEEEEC
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhc--------cCCCCEEEC
Confidence            999987432     348999999999999876543   3688999999999998887777766        899999999


Q ss_pred             ccccCCCCCcccc-ccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 040607          445 SCNKLTGEIPLRI-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG  523 (629)
Q Consensus       445 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  523 (629)
                      ++|.+++..+..+ ..+++|++|+|++|.+++...  ...+++|++|++++|++++. |..+..+++|+.|++++|+++.
T Consensus       152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE
T ss_pred             CCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc
Confidence            9999997666666 478999999999999998743  34589999999999999954 5568999999999999999995


Q ss_pred             cCCCccccccccCCCCCCCCCCCC
Q 040607          524 KTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       524 ~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                       +|..+..+++++.+++++|++.|
T Consensus       229 -l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          229 -IEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             -ECTTCCCCTTCCEEECTTCCCBH
T ss_pred             -hhhHhhcCCCCCEEEccCCCccC
Confidence             46667889999999999999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.3e-24  Score=208.82  Aligned_cols=206  Identities=20%  Similarity=0.250  Sum_probs=158.6

Q ss_pred             CCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcc
Q 040607          334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDIS  413 (629)
Q Consensus       334 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  413 (629)
                      ..+.++++++.++. +|..+.  ++++.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            46778888887774 444332  567888888888876666678888888888888888876666667778888888888


Q ss_pred             cCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECc
Q 040607          414 KKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS  493 (629)
Q Consensus       414 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  493 (629)
                      +|.+.+..+..+..        +++|+.|++++|.+++..+..|..+++|++|+|++|.++++++..|..+++|++|+++
T Consensus        94 ~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           94 DNKLQALPIGVFDQ--------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             SSCCCCCCTTTTTT--------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCCcCCHhHccc--------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence            88887766666655        7788888888888876666777788888888888888887777777888888888888


Q ss_pred             CCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          494 YNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       494 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      +|++++..+..|..+++|+.|++++|++++..+..+..+++++.+++++|||.| +|.
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c-~c~  222 (270)
T 2o6q_A          166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC-TCN  222 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-SSS
T ss_pred             CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC-CCc
Confidence            888887666677778888888888888887666667777788888888888887 664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=6.8e-28  Score=263.24  Aligned_cols=435  Identities=16%  Similarity=0.134  Sum_probs=226.4

Q ss_pred             ccCCCCCcEEEcCCCCceeec---c--------hhhhhcCccchhcccceeeccCcccCccchhhhc-CCCCCCEEEccC
Q 040607            8 LHNLTNLENLTLDNSFFHVSL---L--------QSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIK-SMTSLKLLSLSN   75 (629)
Q Consensus         8 l~~l~~L~~L~l~~~~~~~~~---~--------~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~-~l~~L~~L~Ls~   75 (629)
                      +..+++|++|++++|......   |        ..+..+.  .....|++|++++|.+++..+..+. .+++|++|+|++
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~--~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS--SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH--HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHH--HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            456789999999998532111   1        0111110  0113678889998888877777775 688899999988


Q ss_pred             C-cCCCccCccccCCCCCCcEEEccCCcCccCCCccc----CCCCCCCeeecccccCCcccCccc----cCCCCCCCEEE
Q 040607           76 S-RLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCL----GNMTSLQVLNISSNQLTGNISSPP----LKHLKSIQELK  146 (629)
Q Consensus        76 n-~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~i~~~~----l~~l~~L~~L~  146 (629)
                      | .+++......+.++++|++|++++|.+++..+..+    ..+++|++|++++|. . .+....    ...+++|++|+
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~  217 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLK  217 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEE
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEe
Confidence            8 44421122234578889999998888766554433    367788888888886 1 222212    34468888888


Q ss_pred             ccCcc-cccccCCcccCCCCCCcEEECCCCcc-------eeecCCCCcCCcccccEE-EeccCCCCCcChhhcCCCCCCE
Q 040607          147 LSNNY-FQIPISLGPLYNHSNLKIFDSENNQI-------YAQTESHSLTPKFQLNSI-ILSHGSGVTFPKFLYHQHDLKH  217 (629)
Q Consensus       147 L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~l~~~~~L~~  217 (629)
                      +++|. +. .++ ..+..+++|+.|+++.+..       .....  .+..+.+|+.+ .+.......++..+..+++|++
T Consensus       218 L~~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~--~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~  293 (594)
T 2p1m_B          218 LNRAVPLE-KLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSV--ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT  293 (594)
T ss_dssp             CCTTSCHH-HHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHH--HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred             cCCCCcHH-HHH-HHHhcCCcceEcccccccCccchhhHHHHHH--HHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence            88873 33 222 3466778888888765431       11110  12333445544 2222222334444444555555


Q ss_pred             EEccCCCCCCCCChhHHhcCCCCcEEeccCccccccC-CCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCC
Q 040607          218 VNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIF-QMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRL  296 (629)
Q Consensus       218 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l  296 (629)
                      |++++|.+++.....+...+++|+.|++++| +.... ......+++|++|++.++.-.+             ....+.+
T Consensus       294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g-------------~~~~~~l  359 (594)
T 2p1m_B          294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV-------------MEPNVAL  359 (594)
T ss_dssp             EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC-------------SSCSSCC
T ss_pred             EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc-------------cccCCCC
Confidence            5555555443222222334455555555544 22110 0011123444444442210000             0022233


Q ss_pred             CcccchhhhhCCCCCcEEEccCcccccccCcccC-CCCCCcEEEcc--C----CcCccc-----CchhhhccccCCceec
Q 040607          297 IGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKI-NLTNLWRLQLD--G----NHFIGE-----IPESLSNCNLFGGLYL  364 (629)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l  364 (629)
                      ++.....+..++++|++|.+..+.+++.....+. .+++|+.|+++  +    +.++..     ++..+..+++|+.|++
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence            3222222333355666665555555544333332 35566666665  2    233311     1122455666666666


Q ss_pred             cccccCCCccccccC-CCCCccccCCCCcccCCCCccc-cCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCee
Q 040607          365 SDNHLSGKIPRWLGN-LSVSEDVIMPNNHLEGPIPMEF-CQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGL  442 (629)
Q Consensus       365 ~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L  442 (629)
                      ++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|++++.....+.       ..+++|+.|
T Consensus       440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-------~~l~~L~~L  511 (594)
T 2p1m_B          440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-------SKLETMRSL  511 (594)
T ss_dssp             CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-------GGGGGSSEE
T ss_pred             cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-------HhCCCCCEE
Confidence            55 333333333333 5667777777766644322222 4577888888888877432222111       126788888


Q ss_pred             ecccccCCCCCcccc-ccccccceEeccCcc
Q 040607          443 DLSCNKLTGEIPLRI-GNLTRIHTLNVSHNK  472 (629)
Q Consensus       443 ~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~  472 (629)
                      ++++|+++......+ ..+++++...+..+.
T Consensus       512 ~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          512 WMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             EEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             eeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            888887743222223 345666665555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=9.7e-25  Score=214.27  Aligned_cols=205  Identities=19%  Similarity=0.156  Sum_probs=153.6

Q ss_pred             CCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccc
Q 040607          307 GCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDV  386 (629)
Q Consensus       307 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  386 (629)
                      .++++++++++++.++.. |..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+  ...+++|+.|
T Consensus         8 ~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            477889999999888854 43332  678899999998887778888888889999998888874333  2667788888


Q ss_pred             cCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceE
Q 040607          387 IMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTL  466 (629)
Q Consensus       387 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  466 (629)
                      ++++|.+. .+|..+..+++|++|++++|.+.+..+..+..        +++|+.|++++|++++..+..|..+++|+.|
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------CCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            88888777 45666777777888888887777766666655        6777777777777776666667777777777


Q ss_pred             eccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          467 NVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       467 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      +|++|+++++++..|.++++|+.|++++|+++ .+|..+...++|+.+++++|++.|.+.
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            77777777776666777777777777777777 556666666777777777777776553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=6.6e-26  Score=239.36  Aligned_cols=244  Identities=18%  Similarity=0.157  Sum_probs=159.6

Q ss_pred             CCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccC
Q 040607          239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN  318 (629)
Q Consensus       239 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~  318 (629)
                      +|+.|++++|.++...+..|..+++|+.|++++|.+.+..++..+++|+.|++++|.++ .++.     .++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE-EEEE-----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC-CCCC-----CCCcCEEECcC
Confidence            67777777777776666666666666666666666665555666666666666666655 3332     24566666666


Q ss_pred             cccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCC
Q 040607          319 NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP  398 (629)
Q Consensus       319 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  398 (629)
                      |.+++..+.   .+++|+.|++++|.+++..|..+..                        +++|+.|++++|.+++..|
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------RSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG------------------------GSSEEEEECTTSCCCEEEG
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC------------------------CCCCCEEECCCCCCCCcCh
Confidence            655544332   2344555555555555444444444                        4455555555555544444


Q ss_pred             cccc-CCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccc
Q 040607          399 MEFC-QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI  477 (629)
Q Consensus       399 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  477 (629)
                      ..+. .+++|++|++++|.+.+..+...          +++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++++ 
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~~~----------l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~l-  229 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDVKGQVV----------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI-  229 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEECCCC----------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEE-
T ss_pred             HHHhhhCCcccEEecCCCcccccccccc----------CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCccc-
Confidence            4443 56677777777777765533221          6788888888888885 444588889999999999999874 


Q ss_pred             cccccCCCCCCEEECcCCcCC-CCCCccccCCCCCCEEEcc-------cCcCcccCCC
Q 040607          478 LSTFSNLKQTESLDLSYNKLT-GKIPPQLVELNALAVFSVA-------HNKLSGKTPD  527 (629)
Q Consensus       478 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~  527 (629)
                      |..+..+++|+.|++++|.+. +.+|..+..++.|+.++++       .|+..|.++.
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            556888899999999999987 5667778888888888886       5666555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.5e-23  Score=205.76  Aligned_cols=207  Identities=23%  Similarity=0.210  Sum_probs=145.1

Q ss_pred             cCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCccc
Q 040607          329 KINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ  408 (629)
Q Consensus       329 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  408 (629)
                      +..+++++.++++++.++. +|..+.  +.++.|++++|.+.+..+..+..+++|+.|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            4456777777777777763 343332  5677777777777766666777777777777777777654332  5677777


Q ss_pred             EEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCC
Q 040607          409 ILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTE  488 (629)
Q Consensus       409 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  488 (629)
                      +|++++|.+. .+|..+..        +++|+.|++++|++++..+..|..+++|++|+|++|+++++++..|..+++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~--------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQT--------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTT--------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCcCC-cCchhhcc--------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            7777777775 34444444        67777777777777766666777777777777777777777777777777777


Q ss_pred             EEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          489 SLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       489 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      .|++++|+++...+..|..+++|+.|++++|+++ .+|..+....+++.+++++|||.| +|.
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C-~c~  212 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC-NCE  212 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC-SGG
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC-cCc
Confidence            7777777777665556677777777777777777 445445556677777777777777 564

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.3e-23  Score=204.80  Aligned_cols=206  Identities=21%  Similarity=0.230  Sum_probs=151.4

Q ss_pred             CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcccc
Q 040607          308 CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI  387 (629)
Q Consensus       308 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  387 (629)
                      +++|+.|++++|.+...  ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            45666666666665532  2355566666677766666542  3566666777777777777666666666777777777


Q ss_pred             CCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEe
Q 040607          388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN  467 (629)
Q Consensus       388 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  467 (629)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+..        +++|+.|++++|.+++..+..+..+++|++|+
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------CccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            7777777666666777888888888888887766666655        78888888888888866666778888899999


Q ss_pred             ccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc
Q 040607          468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF  532 (629)
Q Consensus       468 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  532 (629)
                      +++|++++.++..|..+++|+.|++++|.+.+.       +++|+.+++++|.+++.+|.+++.+
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            999988888887788888999999999887743       4568888888899988888766554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.3e-23  Score=202.95  Aligned_cols=210  Identities=20%  Similarity=0.183  Sum_probs=129.5

Q ss_pred             CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccC
Q 040607          280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLF  359 (629)
Q Consensus       280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  359 (629)
                      ...+++|+.|++++|.+. .++. + ..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~~~-l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SVQG-I-QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccccceeeeeeCCCCcc-cccc-c-ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            344455555555555544 2322 1 1255555555555555532  245555566666666666655555555566666


Q ss_pred             CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607          360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM  439 (629)
Q Consensus       360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  439 (629)
                      ++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..        +++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L  183 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------LTQL  183 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTC
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------CccC
Confidence            66666666665555555566666666666666666555555666777777777777776666655544        6777


Q ss_pred             CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC
Q 040607          440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN  509 (629)
Q Consensus       440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  509 (629)
                      +.|++++|.+++..+..+..+++|+.|++++|.+.+.       +++|+.|+++.|.+++.+|..+..++
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            7777777777766666677777777777777776532       45677777777777777777666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=2e-22  Score=193.84  Aligned_cols=181  Identities=18%  Similarity=0.199  Sum_probs=143.6

Q ss_pred             CCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcc
Q 040607          334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDIS  413 (629)
Q Consensus       334 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  413 (629)
                      +.+.++++++.++ .+|..+.  +.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4667888888877 3444443  578888888888887777778888888888888888887777778888888888888


Q ss_pred             cCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECc
Q 040607          414 KKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS  493 (629)
Q Consensus       414 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  493 (629)
                      +|.+.+..+..+..        +++|+.|++++|.+++..+..|..+++|++|+|++|.++++++..|..+++|++|+++
T Consensus        92 ~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           92 NNQLASLPLGVFDH--------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             TSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcccccChhHhcc--------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            88887777766655        7888888888888886666667788888888888888888777778888888888888


Q ss_pred             CCcCCCCCCccccCCCCCCEEEcccCcCcccC
Q 040607          494 YNKLTGKIPPQLVELNALAVFSVAHNKLSGKT  525 (629)
Q Consensus       494 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  525 (629)
                      +|++++..+..|..+++|+.|++++|++.+..
T Consensus       164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            88888777777888888888888888888763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=8.8e-23  Score=194.92  Aligned_cols=197  Identities=19%  Similarity=0.184  Sum_probs=134.3

Q ss_pred             CCCcEEEccCcccccccCcccCCCCCCcEEEccCCc-CcccCchhhhccccCCceeccc-cccCCCccccccCCCCCccc
Q 040607          309 FSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNH-FIGEIPESLSNCNLFGGLYLSD-NHLSGKIPRWLGNLSVSEDV  386 (629)
Q Consensus       309 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  386 (629)
                      +++++|++++|++++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            467777777777776666667777777777777775 6655555677777777777776 66665555566666677777


Q ss_pred             cCCCCcccCCCCccccCCCccc---EEEcccC-cCCCCCCCCcCCCccccCCCccCCC-eeecccccCCCCCcccccccc
Q 040607          387 IMPNNHLEGPIPMEFCQLNFLQ---ILDISKK-NIFGSLPSCFNPFSIKQGKPLNSMS-GLDLSCNKLTGEIPLRIGNLT  461 (629)
Q Consensus       387 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~  461 (629)
                      ++++|.+++ +|. +..+++|+   +|++++| .+.+..+..+..        +++|+ .|++++|.++...+..+.. +
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--------l~~L~~~L~l~~n~l~~i~~~~~~~-~  179 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG--------LCNETLTLKLYNNGFTSVQGYAFNG-T  179 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------TBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc--------hhcceeEEEcCCCCCcccCHhhcCC-C
Confidence            777666664 343 66666666   7777777 676666666655        67777 7777777777333334444 7


Q ss_pred             ccceEeccCcc-ccccccccccCC-CCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607          462 RIHTLNVSHNK-LTGLILSTFSNL-KQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       462 ~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  519 (629)
                      +|++|++++|+ ++++++..|.++ ++|++|++++|++++. |..  .+++|+.|+++++
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            78888888884 777777777777 7788888888887743 332  4567777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.1e-21  Score=188.79  Aligned_cols=177  Identities=18%  Similarity=0.182  Sum_probs=86.4

Q ss_pred             CcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCC
Q 040607          311 LRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN  390 (629)
Q Consensus       311 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  390 (629)
                      .++++++++.++. +|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            3445555554442 222221  3455555555555544444455555555555555555544444445555555555555


Q ss_pred             CcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccC
Q 040607          391 NHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSH  470 (629)
Q Consensus       391 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  470 (629)
                      |.+++..+..|..+++|++|++++|.+.+..+..+..        +++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc--------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence            5555444444455555555555555554444443333        44555555555555533333444555555555555


Q ss_pred             ccccccccccccCCCCCCEEECcCCcCC
Q 040607          471 NKLTGLILSTFSNLKQTESLDLSYNKLT  498 (629)
Q Consensus       471 n~l~~~~~~~~~~l~~L~~L~L~~N~l~  498 (629)
                      |++++.++..|..+++|+.|++++|+++
T Consensus       165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          165 NQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            5555444444555555555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2e-22  Score=200.42  Aligned_cols=223  Identities=17%  Similarity=0.198  Sum_probs=107.9

Q ss_pred             CccEEeccCCCCCcccchhh--hhCCCCCcEEEccCcccccccCccc--CCCCCCcEEEccCCcCcccCc----hhhhcc
Q 040607          285 SLSVLDLSKNRLIGKIPERL--AMGCFSLRYLVLSNNKMKGHIFSKK--INLTNLWRLQLDGNHFIGEIP----ESLSNC  356 (629)
Q Consensus       285 ~L~~L~L~~n~l~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l  356 (629)
                      .++.+.+.++.+.......+  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            45556666655542111111  0113557777777777766666665  666677777777776664333    223345


Q ss_pred             ccCCceeccccccCCCccccccCCCCCccccCCCCcccCC----CCccccCCCcccEEEcccCcCCCCCCCCcCCCcccc
Q 040607          357 NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP----IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQ  432 (629)
Q Consensus       357 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  432 (629)
                      ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.    .+..+..                             
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-----------------------------  195 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK-----------------------------  195 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-----------------------------
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-----------------------------
Confidence            5555555555555544444444444444444444443221    0111233                             


Q ss_pred             CCCccCCCeeecccccCCCCCcc----ccccccccceEeccCccccccccccccCC---CCCCEEECcCCcCCCCCCccc
Q 040607          433 GKPLNSMSGLDLSCNKLTGEIPL----RIGNLTRIHTLNVSHNKLTGLILSTFSNL---KQTESLDLSYNKLTGKIPPQL  505 (629)
Q Consensus       433 ~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~  505 (629)
                         +++|+.|++++|.++ ..+.    .+..+++|++|+|++|.+++..|..+..+   ++|++|++++|+++ .+|..+
T Consensus       196 ---l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          196 ---FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             ---SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             ---CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence               444555555555544 2222    12344555555555555554444333333   35555555555555 334433


Q ss_pred             cCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCC
Q 040607          506 VELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPF  545 (629)
Q Consensus       506 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~  545 (629)
                      .  ++|+.|++++|++++. |. +..+++++.+++++|++
T Consensus       271 ~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          271 P--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             C--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred             c--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence            2  4555555555555532 22 23445555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.4e-22  Score=198.71  Aligned_cols=179  Identities=19%  Similarity=0.178  Sum_probs=128.8

Q ss_pred             ccCCceeccccccCCCccccc--cCCCCCccccCCCCcccCCCC----ccccCCCcccEEEcccCcCCCCCCCCcCCCcc
Q 040607          357 NLFGGLYLSDNHLSGKIPRWL--GNLSVSEDVIMPNNHLEGPIP----MEFCQLNFLQILDISKKNIFGSLPSCFNPFSI  430 (629)
Q Consensus       357 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  430 (629)
                      ++|++|++++|.+.+..|..+  ..+++|+.|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..   
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---  167 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA---  167 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC---
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc---
Confidence            335555555555444444444  445555555555555544332    23446778888888888887777777766   


Q ss_pred             ccCCCccCCCeeecccccCCCC--C--ccccccccccceEeccCccccccccc---cccCCCCCCEEECcCCcCCCCCCc
Q 040607          431 KQGKPLNSMSGLDLSCNKLTGE--I--PLRIGNLTRIHTLNVSHNKLTGLILS---TFSNLKQTESLDLSYNKLTGKIPP  503 (629)
Q Consensus       431 ~~~~~~~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~  503 (629)
                           +++|+.|++++|++.+.  .  +..+..+++|++|+|++|+++.....   .+..+++|++|++++|++++..|.
T Consensus       168 -----l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          168 -----FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             -----CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             -----CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence                 78888888888887532  1  23346789999999999999754332   357889999999999999988787


Q ss_pred             cccCC---CCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCC
Q 040607          504 QLVEL---NALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL  546 (629)
Q Consensus       504 ~~~~l---~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~  546 (629)
                      .+..+   ++|++|++++|+++ .+|..+.  ++++.+++++|...
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence            77776   69999999999999 5566443  79999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.2e-22  Score=190.18  Aligned_cols=198  Identities=18%  Similarity=0.150  Sum_probs=172.1

Q ss_pred             CCCcEEEccCCcCcccCchhhhccccCCceeccccc-cCCCccccccCCCCCccccCCC-CcccCCCCccccCCCcccEE
Q 040607          333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNH-LSGKIPRWLGNLSVSEDVIMPN-NHLEGPIPMEFCQLNFLQIL  410 (629)
Q Consensus       333 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  410 (629)
                      ++++.|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|+.|++++ |.+++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            489999999999998888899999999999999997 8766677899999999999998 99998888889999999999


Q ss_pred             EcccCcCCCCCCCCcCCCccccCCCccCCC---eeecccc-cCCCCCccccccccccc-eEeccCccccccccccccCCC
Q 040607          411 DISKKNIFGSLPSCFNPFSIKQGKPLNSMS---GLDLSCN-KLTGEIPLRIGNLTRIH-TLNVSHNKLTGLILSTFSNLK  485 (629)
Q Consensus       411 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~  485 (629)
                      ++++|.+.+ +|. +..        +++|+   .|++++| .+++..+..|.++++|+ +|++++|+++.+++..|.. +
T Consensus       111 ~l~~n~l~~-lp~-~~~--------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~  179 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTK--------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T  179 (239)
T ss_dssp             EEEEECCCS-CCC-CTT--------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred             eCCCCCCcc-ccc-ccc--------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence            999999977 444 544        67777   9999999 99866777899999999 9999999999877777776 8


Q ss_pred             CCCEEECcCCc-CCCCCCccccCC-CCCCEEEcccCcCcccCCCccccccccCCCCCCCCC
Q 040607          486 QTESLDLSYNK-LTGKIPPQLVEL-NALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNP  544 (629)
Q Consensus       486 ~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np  544 (629)
                      +|++|++++|+ ++...+..|..+ ++|+.|++++|+++...+.   .+.+++.+++.+++
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            99999999995 997778889999 9999999999999965444   56677777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.2e-23  Score=208.78  Aligned_cols=253  Identities=18%  Similarity=0.155  Sum_probs=118.6

Q ss_pred             EccCCCCccccc--CCCCCCccEEeccCCCCCcccch---hhhhCCC-CCcEEEccCcccccccCcccCCC-----CCCc
Q 040607          268 DVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPE---RLAMGCF-SLRYLVLSNNKMKGHIFSKKINL-----TNLW  336 (629)
Q Consensus       268 ~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~  336 (629)
                      +++.|.+.+..+  +...++|++|++++|.+++..+.   ..+..++ +|++|++++|.+++..+..+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            344444443333  22233355555555555422221   2222344 55555555555554444333332     5555


Q ss_pred             EEEccCCcCcccCchhhhc----c-ccCCceeccccccCCCccccc----cC-CCCCccccCCCCcccCCCC----cccc
Q 040607          337 RLQLDGNHFIGEIPESLSN----C-NLFGGLYLSDNHLSGKIPRWL----GN-LSVSEDVIMPNNHLEGPIP----MEFC  402 (629)
Q Consensus       337 ~L~l~~n~l~~~~~~~~~~----l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~----~~~~  402 (629)
                      +|++++|.+++..+..+..    + ++|++|++++|.+.+..+..+    .. .++|++|++++|.+.+...    ..+.
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA  163 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence            5555555555444433222    2 455555555555544333222    22 2355555555555543222    1223


Q ss_pred             CCC-cccEEEcccCcCCCCCCCCcCCCccccCCCc-cCCCeeecccccCCCC----Ccccccc-ccccceEeccCccccc
Q 040607          403 QLN-FLQILDISKKNIFGSLPSCFNPFSIKQGKPL-NSMSGLDLSCNKLTGE----IPLRIGN-LTRIHTLNVSHNKLTG  475 (629)
Q Consensus       403 ~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~  475 (629)
                      .++ +|++|++++|.+.+..+..+...    .... ++|+.|+|++|.+++.    ++..+.. .++|++|+|++|.+++
T Consensus       164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~----l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          164 AIPANVNSLNLRGNNLASKNCAELAKF----LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHH----HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             cCCccccEeeecCCCCchhhHHHHHHH----HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            333 56666666665544433222110    0002 3566666666665532    2333333 2466666666666665


Q ss_pred             ccc----ccccCCCCCCEEECcCCcCCCCCC-------ccccCCCCCCEEEcccCcCccc
Q 040607          476 LIL----STFSNLKQTESLDLSYNKLTGKIP-------PQLVELNALAVFSVAHNKLSGK  524 (629)
Q Consensus       476 ~~~----~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~  524 (629)
                      ..+    ..+..+++|++|++++|.+....+       ..+..+++|+.||+++|++...
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            433    223455666666666666432222       2345556666666666666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=6.4e-21  Score=188.99  Aligned_cols=203  Identities=16%  Similarity=0.239  Sum_probs=113.8

Q ss_pred             CCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCch
Q 040607          272 NFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPE  351 (629)
Q Consensus       272 n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  351 (629)
                      +.+........+++|+.|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  .
T Consensus        29 ~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~  101 (308)
T 1h6u_A           29 SNVTDTVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--S  101 (308)
T ss_dssp             SSTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--G
T ss_pred             CCcCceecHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--h
Confidence            33333333344455555555555554 3331  1224555555555555543322  44455555555555544422  1


Q ss_pred             hhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccc
Q 040607          352 SLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIK  431 (629)
Q Consensus       352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  431 (629)
                                              .+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.+..+  +..    
T Consensus       102 ------------------------~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~----  149 (308)
T 1h6u_A          102 ------------------------AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG----  149 (308)
T ss_dssp             ------------------------GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG----
T ss_pred             ------------------------hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC----
Confidence                                    344445555555555555432 1 25556666666666666654333  322    


Q ss_pred             cCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCC
Q 040607          432 QGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNAL  511 (629)
Q Consensus       432 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  511 (629)
                          +++|+.|++++|.+++. +. +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..+++|
T Consensus       150 ----l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L  219 (308)
T 1h6u_A          150 ----LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL  219 (308)
T ss_dssp             ----CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC
T ss_pred             ----CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC
Confidence                56677777777777633 32 6677777777777777776543  667777777777777777443  26677777


Q ss_pred             CEEEcccCcCcc
Q 040607          512 AVFSVAHNKLSG  523 (629)
Q Consensus       512 ~~L~l~~N~l~~  523 (629)
                      +.|++++|++++
T Consensus       220 ~~L~l~~N~i~~  231 (308)
T 1h6u_A          220 FIVTLTNQTITN  231 (308)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CEEEccCCeeec
Confidence            777777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.1e-22  Score=206.92  Aligned_cols=255  Identities=17%  Similarity=0.102  Sum_probs=196.4

Q ss_pred             EEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccC----cccCCCC-CCcEEEccCCcCcccCchhhhcc-----c
Q 040607          288 VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIF----SKKINLT-NLWRLQLDGNHFIGEIPESLSNC-----N  357 (629)
Q Consensus       288 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~  357 (629)
                      .++++.|.+.+.+|.... ..++|++|++++|.+++..+    ..+..++ +|++|++++|.++...+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            467899999977776544 35669999999999998776    6778888 89999999999998888777775     9


Q ss_pred             cCCceeccccccCCCcccc----ccCC-CCCccccCCCCcccCCCCccc----cC-CCcccEEEcccCcCCCCCCCCcCC
Q 040607          358 LFGGLYLSDNHLSGKIPRW----LGNL-SVSEDVIMPNNHLEGPIPMEF----CQ-LNFLQILDISKKNIFGSLPSCFNP  427 (629)
Q Consensus       358 ~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~  427 (629)
                      +|++|++++|.+.+..+..    +..+ ++|+.|++++|.+++..+..+    .. .++|++|++++|.+.+..+..+..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999999998766654    4444 899999999999987765543    33 369999999999987544332211


Q ss_pred             CccccCCCc-cCCCeeecccccCCCCCccccc----cc-cccceEeccCcccccc----ccccccC-CCCCCEEECcCCc
Q 040607          428 FSIKQGKPL-NSMSGLDLSCNKLTGEIPLRIG----NL-TRIHTLNVSHNKLTGL----ILSTFSN-LKQTESLDLSYNK  496 (629)
Q Consensus       428 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~L~~N~  496 (629)
                      .    .... ++|+.|++++|.+++..+..+.    .+ ++|++|+|++|.+++.    .+..+.. .++|++|++++|.
T Consensus       161 ~----l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          161 I----LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             H----HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             H----HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            0    0013 4899999999999866665443    44 6999999999999874    3344554 4699999999999


Q ss_pred             CCCCCC----ccccCCCCCCEEEcccCcCcccCC-------CccccccccCCCCCCCCCCCC
Q 040607          497 LTGKIP----PQLVELNALAVFSVAHNKLSGKTP-------DWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       497 l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~~~~l~~l~~~~np~~c  547 (629)
                      +++..+    ..+..+++|+.|++++|.+....+       ..+..+++++.+++++|+...
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            986554    345677999999999999554333       345567788899999998743

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=4.3e-21  Score=190.24  Aligned_cols=195  Identities=18%  Similarity=0.248  Sum_probs=137.6

Q ss_pred             CcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCc
Q 040607          257 PKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW  336 (629)
Q Consensus       257 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  336 (629)
                      ....+++|+.|++++|.+.....+..+++|+.|++++|.+. .++.  +..+++|++|++++|.+++.  ..+..+++|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            45568899999999999987767889999999999999998 5555  55699999999999999864  3688999999


Q ss_pred             EEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607          337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN  416 (629)
Q Consensus       337 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  416 (629)
                      .|++++|.+++. + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..             
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~-------------  171 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN-------------  171 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT-------------
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcC-------------
Confidence            999999998854 3 37788888888888887764332  4455555555555555543221  344             


Q ss_pred             CCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCc
Q 040607          417 IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNK  496 (629)
Q Consensus       417 l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  496 (629)
                                         +++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|+
T Consensus       172 -------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          172 -------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEE
T ss_pred             -------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCe
Confidence                               4555555555555553222  5556666666666666665442  5566666666666666


Q ss_pred             CC
Q 040607          497 LT  498 (629)
Q Consensus       497 l~  498 (629)
                      ++
T Consensus       229 i~  230 (308)
T 1h6u_A          229 IT  230 (308)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=5.4e-23  Score=207.40  Aligned_cols=233  Identities=15%  Similarity=0.164  Sum_probs=120.0

Q ss_pred             CCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccc-cCcccCCCCCCcEEEccCCcCcccCchhhhccccCCce
Q 040607          284 KSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGH-IFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGL  362 (629)
Q Consensus       284 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  362 (629)
                      ++++.|++++|.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            3444455554444432222 22 244555555555544433 33444445555555555555444444445555555555


Q ss_pred             ecccc-ccCC-CccccccCCCCCccccCCCC-cccCC-CCccccCCC-cccEEEcccC--cCC-CCCCCCcCCCccccCC
Q 040607          363 YLSDN-HLSG-KIPRWLGNLSVSEDVIMPNN-HLEGP-IPMEFCQLN-FLQILDISKK--NIF-GSLPSCFNPFSIKQGK  434 (629)
Q Consensus       363 ~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~~~~~  434 (629)
                      ++++| .+++ .++..+..+++|+.|++++| .+++. .+..+..++ +|++|++++|  .+. +.++..+..       
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-------  220 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-------  220 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-------
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-------
Confidence            55555 3332 13333444555555555555 44432 233445555 6666666665  232 222222222       


Q ss_pred             CccCCCeeeccccc-CCCCCccccccccccceEeccCcc-ccccccccccCCCCCCEEECcCCcCCCCCCccccCC-CCC
Q 040607          435 PLNSMSGLDLSCNK-LTGEIPLRIGNLTRIHTLNVSHNK-LTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVEL-NAL  511 (629)
Q Consensus       435 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L  511 (629)
                       +++|+.|++++|. +++..+..+..+++|++|++++|. ++......+.++++|++|++++| ++.   +.+..+ .++
T Consensus       221 -~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l  295 (336)
T 2ast_B          221 -CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEAL  295 (336)
T ss_dssp             -CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHS
T ss_pred             -CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhC
Confidence             5666667776666 554555566677777777777773 33322235666777777777777 332   223333 235


Q ss_pred             CEEEcccCcCcccCCCccc
Q 040607          512 AVFSVAHNKLSGKTPDWVA  530 (629)
Q Consensus       512 ~~L~l~~N~l~~~~~~~~~  530 (629)
                      +.|++++|++++..|.+++
T Consensus       296 ~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          296 PHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TTSEESCCCSCCTTCSSCS
T ss_pred             cceEEecccCccccCCccc
Confidence            5566777777777766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=4.9e-21  Score=193.72  Aligned_cols=242  Identities=17%  Similarity=0.067  Sum_probs=166.2

Q ss_pred             cEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCccccccc-CcccCCCCCCcE-EEccC
Q 040607          265 TYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI-FSKKINLTNLWR-LQLDG  342 (629)
Q Consensus       265 ~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~l~~  342 (629)
                      ++++.++++++..+. .-.+++++|++++|+++ .+|...|.++++|++|+|++|++.+.+ +..|.++++++. +.+++
T Consensus        12 ~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCT-TCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCc-CcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            456777777764432 22467888888888887 778777777888888888888875543 456777877665 55566


Q ss_pred             CcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCC-CcccCCCCccccCCC-cccEEEcccCcCCCC
Q 040607          343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPN-NHLEGPIPMEFCQLN-FLQILDISKKNIFGS  420 (629)
Q Consensus       343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~  420 (629)
                      |+++...|..|..+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++++|.+...
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            778877778888888888888888888766665666666677777754 455555555566654 577788888888766


Q ss_pred             CCCCcCCCccccCCCccCCCeeeccc-ccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCC
Q 040607          421 LPSCFNPFSIKQGKPLNSMSGLDLSC-NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG  499 (629)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  499 (629)
                      .+..+.         ..+|+.|++++ |.++...+.+|.++++|++|+|++|+|+.+++..|   .+|+.|.+.++.--.
T Consensus       170 ~~~~f~---------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          170 HNSAFN---------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK  237 (350)
T ss_dssp             CTTSST---------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC
T ss_pred             Chhhcc---------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC
Confidence            555553         45677888864 55664444567888888888888888887766554   445555554443333


Q ss_pred             CCCccccCCCCCCEEEcccCcC
Q 040607          500 KIPPQLVELNALAVFSVAHNKL  521 (629)
Q Consensus       500 ~~~~~~~~l~~L~~L~l~~N~l  521 (629)
                      .+| .+..+++|+.+++.++..
T Consensus       238 ~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          238 KLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             CCC-CTTTCCSCCEEECSCHHH
T ss_pred             cCC-CchhCcChhhCcCCCCcc
Confidence            556 367778888888875543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.4e-22  Score=204.36  Aligned_cols=254  Identities=19%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             CCCEEEccCCCCCCCCChhHHhcC--CCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccc-cc--CCCCCCccE
Q 040607          214 DLKHVNLSHINLRGEFPNWLSENN--TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVH-IP--VGNMKSLSV  288 (629)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~--~~~~~~L~~  288 (629)
                      .++.++++++.+.   +..+ ..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+... .+  +..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4778888877665   2222 344  6777777777776665443 22455555555555554432 11  444555555


Q ss_pred             EeccCCCCCcccchhhhhCCCCCcEEEccCc-ccccc-cCcccCCCCCCcEEEccCC-cCccc-Cchhhhccc-cCCcee
Q 040607          289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNN-KMKGH-IFSKKINLTNLWRLQLDGN-HFIGE-IPESLSNCN-LFGGLY  363 (629)
Q Consensus       289 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~  363 (629)
                      |++++|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus       123 L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            555555544333333332 455555555555 34331 2233344445555555555 44432 233344444 444444


Q ss_pred             ccccccCCCccccccCCCCCccccCCCCccc-CCCCccccCCCcccEEEcccCc-CCCCCCCCcCCCccccCCCccCCCe
Q 040607          364 LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE-GPIPMEFCQLNFLQILDISKKN-IFGSLPSCFNPFSIKQGKPLNSMSG  441 (629)
Q Consensus       364 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~  441 (629)
                      +++|.+                      .++ +.++..+..+++|++|++++|. +++..+..+..        +++|+.
T Consensus       202 l~~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--------l~~L~~  251 (336)
T 2ast_B          202 LSGYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--------LNYLQH  251 (336)
T ss_dssp             CCSCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--------CTTCCE
T ss_pred             eCCCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--------CCCCCE
Confidence            444421                      222 1233344455566666666665 44444444433        566666


Q ss_pred             eeccccc-CCCCCccccccccccceEeccCccccccccccccCC-CCCCEEECcCCcCCCCCCccccC
Q 040607          442 LDLSCNK-LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNL-KQTESLDLSYNKLTGKIPPQLVE  507 (629)
Q Consensus       442 L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~  507 (629)
                      |++++|. +.......+..+++|+.|++++| ++..   .+..+ .+++.|++++|++++..|..+..
T Consensus       252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence            6666664 22111124566777777777777 4332   22222 23555667778887777766543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=9.9e-23  Score=209.46  Aligned_cols=242  Identities=19%  Similarity=0.248  Sum_probs=144.2

Q ss_pred             CcccCCCccEEEccCCCCccccc------CCCCCCccEEeccCCC---CCcccchhhh------hCCCCCcEEEccCccc
Q 040607          257 PKHARRHLTYLDVSDNFFQVHIP------VGNMKSLSVLDLSKNR---LIGKIPERLA------MGCFSLRYLVLSNNKM  321 (629)
Q Consensus       257 ~~~~~~~L~~L~L~~n~~~~~~~------~~~~~~L~~L~L~~n~---l~~~~~~~~~------~~~~~L~~L~L~~n~l  321 (629)
                      .+..+++|+.|++++|.+....+      +..+++|+.|++++|.   +.+.+|..+.      ..+++|++|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            34455667777777776664322      5566777777777653   3333443331      2345555555555555


Q ss_pred             cc----ccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCC---------CCCccccC
Q 040607          322 KG----HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNL---------SVSEDVIM  388 (629)
Q Consensus       322 ~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~L~l  388 (629)
                      ..    .++..+..+++|++|++++|.++...+..+..                    .+..+         ++|+.|++
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCEEEC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcEEEC
Confidence            54    23334445555555555555554322222221                    11112         45555555


Q ss_pred             CCCcccC-CCC---ccccCCCcccEEEcccCcCCC-----CCCCCcCCCccccCCCccCCCeeecccccCC----CCCcc
Q 040607          389 PNNHLEG-PIP---MEFCQLNFLQILDISKKNIFG-----SLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT----GEIPL  455 (629)
Q Consensus       389 ~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~  455 (629)
                      ++|.+.. ..+   ..+..+++|++|++++|.+..     ..+..+..        +++|+.|+|++|.++    ..+|.
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~--------~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------CQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--------CTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc--------CCCccEEECcCCCCCcHHHHHHHH
Confidence            5555541 222   244556677777777776641     22223333        677778888888774    35667


Q ss_pred             ccccccccceEeccCcccccc----cccccc--CCCCCCEEECcCCcCCC----CCCccc-cCCCCCCEEEcccCcCccc
Q 040607          456 RIGNLTRIHTLNVSHNKLTGL----ILSTFS--NLKQTESLDLSYNKLTG----KIPPQL-VELNALAVFSVAHNKLSGK  524 (629)
Q Consensus       456 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~--~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~  524 (629)
                      .+..+++|++|+|++|.+++.    .+..+.  .+++|++|++++|.++.    .+|..+ ..+++|+.|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            778888888888888888765    345553  37888888888888886    366666 5578888888888888876


Q ss_pred             CC
Q 040607          525 TP  526 (629)
Q Consensus       525 ~~  526 (629)
                      .+
T Consensus       319 ~~  320 (386)
T 2ca6_A          319 DD  320 (386)
T ss_dssp             SH
T ss_pred             hh
Confidence            64

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.3e-20  Score=190.62  Aligned_cols=121  Identities=14%  Similarity=0.168  Sum_probs=55.2

Q ss_pred             eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCcc-CCCcccCCCCCCCe-eecc
Q 040607           46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYG-VPPWCLGNMTSLQV-LNIS  123 (629)
Q Consensus        46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~-L~L~  123 (629)
                      +++.++++++ .+|..+  .+++++|+|++|.++ .+++++|.++++|++|+|++|++.+ +++.+|.++++|++ +.++
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            3444444444 233333  134555555555554 4544445555555555555555432 33344555554443 3333


Q ss_pred             cccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEEC
Q 040607          124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS  172 (629)
Q Consensus       124 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  172 (629)
                      .|.++ .++++.|.++++|++|++++|.++ ..+...+....++..+++
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEE
T ss_pred             CCccc-ccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhh
Confidence            44454 444444555555555555555544 222223333344444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=5.8e-23  Score=211.22  Aligned_cols=232  Identities=16%  Similarity=0.201  Sum_probs=171.9

Q ss_pred             CCCCcEEEccCcccccccC----cccCCCCCCcEEEccCCc---CcccCchhh-------hccccCCceeccccccCC--
Q 040607          308 CFSLRYLVLSNNKMKGHIF----SKKINLTNLWRLQLDGNH---FIGEIPESL-------SNCNLFGGLYLSDNHLSG--  371 (629)
Q Consensus       308 ~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~--  371 (629)
                      +++|++|++++|.+....+    ..+..+++|++|++++|.   +.+.+|..+       ..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            5667777777776665432    335567777777777753   333444443       567778888888887775  


Q ss_pred             --CccccccCCCCCccccCCCCcccCCCCcc----ccCC---------CcccEEEcccCcCC-CCCC---CCcCCCcccc
Q 040607          372 --KIPRWLGNLSVSEDVIMPNNHLEGPIPME----FCQL---------NFLQILDISKKNIF-GSLP---SCFNPFSIKQ  432 (629)
Q Consensus       372 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~~~~~~  432 (629)
                        .++..+..+++|+.|++++|.+.+..+..    +..+         ++|++|++++|++. ...+   ..+..     
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-----  185 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-----  185 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-----
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh-----
Confidence              35666777788888888888775433222    3333         89999999999986 3333   23333     


Q ss_pred             CCCccCCCeeecccccCCC-----CCccccccccccceEeccCcccc----ccccccccCCCCCCEEECcCCcCCCC---
Q 040607          433 GKPLNSMSGLDLSCNKLTG-----EIPLRIGNLTRIHTLNVSHNKLT----GLILSTFSNLKQTESLDLSYNKLTGK---  500 (629)
Q Consensus       433 ~~~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~---  500 (629)
                         +++|+.|++++|.++.     ..+..+..+++|+.|+|++|.++    ...+..+..+++|++|++++|.+++.   
T Consensus       186 ---~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          186 ---HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             ---CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             ---CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence               7899999999999873     23447888999999999999996    55677889999999999999999865   


Q ss_pred             -CCccccC--CCCCCEEEcccCcCcc----cCCCcc-ccccccCCCCCCCCCCCC
Q 040607          501 -IPPQLVE--LNALAVFSVAHNKLSG----KTPDWV-AQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       501 -~~~~~~~--l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~l~~~~np~~c  547 (629)
                       +|..+..  +++|+.|++++|++..    .+|..+ ..+++++.+++++|++..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence             4566643  8999999999999998    466655 557999999999999865

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=2.8e-20  Score=174.58  Aligned_cols=156  Identities=23%  Similarity=0.264  Sum_probs=91.1

Q ss_pred             CceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607          360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM  439 (629)
Q Consensus       360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  439 (629)
                      +.++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..        +++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~--------l~~L   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--------LRSL   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT--------CSSC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC--------CcCC
Confidence            45666666665 3343332  45666666666666555555666666666666666665555555544        5566


Q ss_pred             CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccC
Q 040607          440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  519 (629)
                      +.|+|++|.++...+..|.++++|++|+|++|.++++.+..|.++++|++|++++|++++..+..|..+++|+.|++++|
T Consensus        83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            66666666665444444555666666666666666555555666666666666666666555555555666666666666


Q ss_pred             cCcccCC
Q 040607          520 KLSGKTP  526 (629)
Q Consensus       520 ~l~~~~~  526 (629)
                      ++.|.++
T Consensus       163 ~~~c~c~  169 (220)
T 2v9t_B          163 PFICDCH  169 (220)
T ss_dssp             CEECSGG
T ss_pred             CcCCCCc
Confidence            6655444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=1.8e-20  Score=190.31  Aligned_cols=157  Identities=20%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             CccccCCCCcccCCCCcccc-CCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccc
Q 040607          383 SEDVIMPNNHLEGPIPMEFC-QLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLT  461 (629)
Q Consensus       383 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  461 (629)
                      ++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..        +++|+.|+|++|.+++..+..|..++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~  112 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP--------VPNLRYLDLSSNHLHTLDEFLFSDLQ  112 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC--------CCCCCEEECCCCcCCcCCHHHhCCCc
Confidence            33444444444433333333 4444444444444444444444433        44455555555554433334444555


Q ss_pred             ccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccc---cCCCCCCEEEcccCcCcccCCCccccccc--cC
Q 040607          462 RIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL---VELNALAVFSVAHNKLSGKTPDWVAQFAT--FN  536 (629)
Q Consensus       462 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~  536 (629)
                      +|++|+|++|.|+++.+..|.++++|++|+|++|+++...+..|   ..+++|+.|++++|+++...+..+..++.  ++
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred             CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence            55555555555554444455555555555555555553322223   33455555555555555433333333333  24


Q ss_pred             CCCCCCCCCCC
Q 040607          537 GSSYDGNPFLS  547 (629)
Q Consensus       537 ~l~~~~np~~c  547 (629)
                      .+++++|||.|
T Consensus       193 ~l~l~~N~~~C  203 (361)
T 2xot_A          193 GLYLHNNPLEC  203 (361)
T ss_dssp             TEECCSSCEEC
T ss_pred             eEEecCCCccC
Confidence            45555555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=170.51  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=124.6

Q ss_pred             CceeccccccCCCccccccCCCCCccccCCCCcccCCCC-ccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccC
Q 040607          360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP-MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS  438 (629)
Q Consensus       360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  438 (629)
                      +.+++++|.++. +|..+.  ..++.|++++|.+++..+ ..|..+++|++|++++|.+.+..+..+..        +++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------l~~   82 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------ASG   82 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT--------CTT
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC--------CCC
Confidence            578888888874 555443  456788888888886644 45788888888888888887777777766        788


Q ss_pred             CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607          439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH  518 (629)
Q Consensus       439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  518 (629)
                      |+.|+|++|.+++..+..|..+++|++|+|++|+++++.+..|.++++|++|++++|++++..|..|..+++|+.|++++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            88888888888877777788888888888888888888788888888888888888888877788888888888888888


Q ss_pred             CcCcccCC
Q 040607          519 NKLSGKTP  526 (629)
Q Consensus       519 N~l~~~~~  526 (629)
                      |++.|.++
T Consensus       163 N~l~c~c~  170 (220)
T 2v70_A          163 NPFNCNCY  170 (220)
T ss_dssp             CCEECSGG
T ss_pred             cCCcCCCc
Confidence            88887776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.8e-19  Score=167.97  Aligned_cols=161  Identities=20%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             cCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCcc
Q 040607          358 LFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLN  437 (629)
Q Consensus       358 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  437 (629)
                      ++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..        ++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~  100 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------LT  100 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CT
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------cc
Confidence            3444444444444333334444555555555555555444445666777777777777776665555554        67


Q ss_pred             CCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607          438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA  517 (629)
Q Consensus       438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  517 (629)
                      +|+.|++++|.+++..+..+..+++|++|++++|.++++++..|..+++|++|++++|.+.+       .+++|+.|+++
T Consensus       101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~  173 (208)
T 2o6s_A          101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW  173 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred             CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence            78888888888876666667788888888888888888777778888888888888887763       34578888888


Q ss_pred             cCcCcccCCCcccccc
Q 040607          518 HNKLSGKTPDWVAQFA  533 (629)
Q Consensus       518 ~N~l~~~~~~~~~~~~  533 (629)
                      .|++++.+|.+++.+.
T Consensus       174 ~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          174 INKHSGVVRNSAGSVA  189 (208)
T ss_dssp             HHHCTTTBBCTTSSBC
T ss_pred             HHhCCceeeccCcccc
Confidence            8988888887666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.5e-19  Score=192.09  Aligned_cols=187  Identities=22%  Similarity=0.285  Sum_probs=118.8

Q ss_pred             CCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCC
Q 040607          310 SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMP  389 (629)
Q Consensus       310 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  389 (629)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            45555555555554 23222  145555555555555 233   234556666666665554 333 332  66666666


Q ss_pred             CCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEecc
Q 040607          390 NNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVS  469 (629)
Q Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  469 (629)
                      +|.+++ +|.   .+++|+.|++++|.+.+ +|.   .        +++|+.|++++|.+++ +|. +.  ++|+.|+|+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~--------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L--------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C--------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c--------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            666665 333   46777888888877765 333   1        6778888888888874 555 54  788888888


Q ss_pred             CccccccccccccCCCCC-------CEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccc
Q 040607          470 HNKLTGLILSTFSNLKQT-------ESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQF  532 (629)
Q Consensus       470 ~n~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  532 (629)
                      +|.|+.++.  |..  +|       +.|++++|+|+ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus       189 ~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          189 TNLLESLPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             SSCCSSCCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CCCCCchhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            888885443  543  66       88888888888 567777778888888888888888777665554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3e-19  Score=166.40  Aligned_cols=108  Identities=22%  Similarity=0.202  Sum_probs=44.5

Q ss_pred             CCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCC
Q 040607          310 SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMP  389 (629)
Q Consensus       310 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  389 (629)
                      ++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444444433344444444444444444443333334444444444444444443333333333333333333


Q ss_pred             CCcccCCCCccccCCCcccEEEcccCcC
Q 040607          390 NNHLEGPIPMEFCQLNFLQILDISKKNI  417 (629)
Q Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l  417 (629)
                      +|.+.+..+..+..+++|++|++++|.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            3333333333333333333333333333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=3.6e-19  Score=168.18  Aligned_cols=156  Identities=19%  Similarity=0.165  Sum_probs=112.9

Q ss_pred             CCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccC
Q 040607          359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS  438 (629)
Q Consensus       359 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  438 (629)
                      -+.++.+++.+. .+|..+.  ++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+..        +++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~--------l~~   89 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS--------LTQ   89 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTT
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc--------CCC
Confidence            456777777776 4444332  67778888888887777777777788888888888776665555555        677


Q ss_pred             CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607          439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH  518 (629)
Q Consensus       439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  518 (629)
                      |+.|+|++|.+++..+..|..+++|++|+|++|+++. +|..+..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            7778888777776666667777777778887777774 355667777777777777777766666677777777777777


Q ss_pred             CcCcccCC
Q 040607          519 NKLSGKTP  526 (629)
Q Consensus       519 N~l~~~~~  526 (629)
                      |++.|.++
T Consensus       169 N~~~c~c~  176 (229)
T 3e6j_A          169 NPWDCECR  176 (229)
T ss_dssp             SCBCTTBG
T ss_pred             CCccCCcc
Confidence            77777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=3.7e-19  Score=166.91  Aligned_cols=156  Identities=23%  Similarity=0.312  Sum_probs=130.7

Q ss_pred             ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccccccc
Q 040607          384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRI  463 (629)
Q Consensus       384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  463 (629)
                      +.++.+++.++. +|..+.  ++++.|++++|.+.+..+..+..        +++|+.|+|++|.+++..|..|.++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~--------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTT--------CTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhC--------CCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            457777777774 444433  67899999999888877777766        7889999999999887778888889999


Q ss_pred             ceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCC
Q 040607          464 HTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGN  543 (629)
Q Consensus       464 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~n  543 (629)
                      ++|+|++|.++++++..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..+..+..+.+++.+++++|
T Consensus        83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            99999999998888888888999999999999998888888888999999999999998888877888888889999999


Q ss_pred             CCCCCCCC
Q 040607          544 PFLSSSCN  551 (629)
Q Consensus       544 p~~c~~C~  551 (629)
                      ||.| +|.
T Consensus       163 ~~~c-~c~  169 (220)
T 2v9t_B          163 PFIC-DCH  169 (220)
T ss_dssp             CEEC-SGG
T ss_pred             CcCC-CCc
Confidence            9988 675

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=4.5e-19  Score=166.36  Aligned_cols=156  Identities=18%  Similarity=0.277  Sum_probs=123.4

Q ss_pred             ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCC-CCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607          384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP-SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR  462 (629)
Q Consensus       384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  462 (629)
                      +.+++++|.++. +|..+  .+.+++|++++|.+.+..+ ..+..        +++|+.|++++|.+++..+..|..+++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~--------l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGG--------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhcc--------CCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            467888888774 44443  2456788888888877654 34544        788888888888888666667888888


Q ss_pred             cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCC
Q 040607          463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDG  542 (629)
Q Consensus       463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~  542 (629)
                      |++|+|++|.++++++..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..+.+++.+++++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            88888888888888888888888888888888888887788888888888888888888888787788888888888888


Q ss_pred             CCCCCCCCC
Q 040607          543 NPFLSSSCN  551 (629)
Q Consensus       543 np~~c~~C~  551 (629)
                      |||.| +|.
T Consensus       163 N~l~c-~c~  170 (220)
T 2v70_A          163 NPFNC-NCY  170 (220)
T ss_dssp             CCEEC-SGG
T ss_pred             cCCcC-CCc
Confidence            88888 664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=3.4e-19  Score=180.86  Aligned_cols=160  Identities=23%  Similarity=0.240  Sum_probs=102.7

Q ss_pred             CCceeccccccCCCcccccc-CCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCcc
Q 040607          359 FGGLYLSDNHLSGKIPRWLG-NLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLN  437 (629)
Q Consensus       359 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  437 (629)
                      ++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..        ++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~  112 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD--------LQ  112 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------CT
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC--------Cc
Confidence            33444444444433333333 4455555555555555444555666666777777777666655555554        67


Q ss_pred             CCCeeecccccCCCCCccccccccccceEeccCccccccccccc---cCCCCCCEEECcCCcCCCCCCccccCCCC--CC
Q 040607          438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTF---SNLKQTESLDLSYNKLTGKIPPQLVELNA--LA  512 (629)
Q Consensus       438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~  512 (629)
                      +|+.|+|++|.+++..+..|..+++|+.|+|++|.++++++..|   ..+++|+.|+|++|+|+...+..+..++.  ++
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred             CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence            77777777777776666777777888888888888877666666   45788888888888888655566777766  37


Q ss_pred             EEEcccCcCcccCC
Q 040607          513 VFSVAHNKLSGKTP  526 (629)
Q Consensus       513 ~L~l~~N~l~~~~~  526 (629)
                      .|++++|++.|.+.
T Consensus       193 ~l~l~~N~~~C~C~  206 (361)
T 2xot_A          193 GLYLHNNPLECDCK  206 (361)
T ss_dssp             TEECCSSCEECCHH
T ss_pred             eEEecCCCccCCcC
Confidence            78888888877654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.9e-18  Score=168.30  Aligned_cols=171  Identities=24%  Similarity=0.362  Sum_probs=109.5

Q ss_pred             CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcccc
Q 040607          308 CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI  387 (629)
Q Consensus       308 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  387 (629)
                      +++|++|++++|.+...  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+ +              
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~--------------  105 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L--------------  105 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G--------------
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C--------------
Confidence            45666666666666543  224555666666666666554322  5555555555555555442 1              


Q ss_pred             CCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEe
Q 040607          388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN  467 (629)
Q Consensus       388 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  467 (629)
                                 ..+..+++|++|++++|.+.+.  ..+..        +++|+.|++++|.+++.  ..+..+++|+.|+
T Consensus       106 -----------~~l~~l~~L~~L~L~~n~i~~~--~~l~~--------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  162 (291)
T 1h6t_A          106 -----------SSLKDLKKLKSLSLEHNGISDI--NGLVH--------LPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (291)
T ss_dssp             -----------GGGTTCTTCCEEECTTSCCCCC--GGGGG--------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             -----------hhhccCCCCCEEECCCCcCCCC--hhhcC--------CCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence                       1255556666666666666443  22322        66777777777777643  4677788888888


Q ss_pred             ccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607          468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGK  524 (629)
Q Consensus       468 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  524 (629)
                      +++|.+++..+  +..+++|++|++++|.+++ +| .+..+++|+.|++++|++...
T Consensus       163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            88888877654  7788888888888888874 34 377788888888888887753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.1e-18  Score=160.26  Aligned_cols=156  Identities=23%  Similarity=0.316  Sum_probs=112.3

Q ss_pred             CccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607          383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR  462 (629)
Q Consensus       383 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  462 (629)
                      .+.++.+++.+.. +|..+.  ++|++|++++|.+.+..|..+..        +++|+.|+|++|.++...+..|..+++
T Consensus        21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~--------l~~L~~L~L~~N~l~~i~~~~~~~l~~   89 (229)
T 3e6j_A           21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDS--------LINLKELYLGSNQLGALPVGVFDSLTQ   89 (229)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhC--------ccCCcEEECCCCCCCCcChhhcccCCC
Confidence            4456666666663 343332  67777778777777776766655        677777788777777555566677777


Q ss_pred             cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCC
Q 040607          463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDG  542 (629)
Q Consensus       463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~  542 (629)
                      |+.|+|++|+++++++..|..+++|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+.+++.+++.+
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            788888877777777777777777788888777777 5677777777778888877777766666667777777777777


Q ss_pred             CCCCCCCCC
Q 040607          543 NPFLSSSCN  551 (629)
Q Consensus       543 np~~c~~C~  551 (629)
                      ||+.| +|.
T Consensus       169 N~~~c-~c~  176 (229)
T 3e6j_A          169 NPWDC-ECR  176 (229)
T ss_dssp             SCBCT-TBG
T ss_pred             CCccC-Ccc
Confidence            87777 553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.2e-18  Score=169.12  Aligned_cols=138  Identities=20%  Similarity=0.185  Sum_probs=74.2

Q ss_pred             cCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccC
Q 040607          270 SDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEI  349 (629)
Q Consensus       270 ~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  349 (629)
                      ..+.+........+++|+.|++++|.+. .++.  +..+++|++|++++|++++..+  +..+++|+.|++++|.+++. 
T Consensus        32 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-  105 (291)
T 1h6t_A           32 KKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-  105 (291)
T ss_dssp             TCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-
T ss_pred             cCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-
Confidence            3333333333445556666666666655 3432  2236666666666666665433  66666777777777766542 


Q ss_pred             chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCC
Q 040607          350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF  418 (629)
Q Consensus       350 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  418 (629)
                       ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.
T Consensus       106 -~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          106 -SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             -hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence             2366666677777766666532  2344445555555555544432  23444444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=9.2e-18  Score=178.35  Aligned_cols=193  Identities=23%  Similarity=0.272  Sum_probs=88.4

Q ss_pred             CccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccC
Q 040607          263 HLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDG  342 (629)
Q Consensus       263 ~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  342 (629)
                      +++.|++++|.+.+..+ .-.++|+.|++++|.++ .+|    ..+++|++|++++|.+++ +|. +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            34444444444443211 11245555555555555 444    124555556665555554 333 332  555666666


Q ss_pred             CcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCC
Q 040607          343 NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLP  422 (629)
Q Consensus       343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  422 (629)
                      |.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|++++|.+.. +|
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp  196 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-LP  196 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CC
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-hh
Confidence            65554 332   34555555555555553 232   23455555555555553 333 33  555555555555542 22


Q ss_pred             CCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccC
Q 040607          423 SCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSN  483 (629)
Q Consensus       423 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  483 (629)
                      . +..   .-....+.|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..|..|..
T Consensus       197 ~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          197 A-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             h-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            2 210   00000111255555555555 34444444555555555555555544444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.7e-18  Score=173.48  Aligned_cols=283  Identities=15%  Similarity=0.153  Sum_probs=180.5

Q ss_pred             ccceeeccCcccCccchhhhcC-CCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCC--------
Q 040607           43 FIGFRAMDGTALDKNFLQVIKS-MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGN--------  113 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--------  113 (629)
                      .+++|.++++ +...-...+.. +++|++|||++|.+. .... .-..++.++.+.+..|   .+++.+|.+        
T Consensus        26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~-~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g   99 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSG-KAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKG   99 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEE-SSSSSGGGCCEEECTT---EECTTTTEEEETTEEEE
T ss_pred             ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecC-cccccccccccccccc---ccCHHHhcccccccccc
Confidence            4566666654 22222233333 677777777777765 1111 1112222344444444   345556666        


Q ss_pred             CCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCccee---ecCCCCcCCcc
Q 040607          114 MTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYA---QTESHSLTPKF  190 (629)
Q Consensus       114 l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~~~  190 (629)
                      +++|+.|++.+ .++ .|+..+|.+|++|+.+++.+|.+. .++...|..+.++..+....+....   ......+..+.
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            77777777766 566 666666777777777777776665 4555666666666666555432110   01112223333


Q ss_pred             ccc-EEEeccCCCCCcChhhc----CCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCcc
Q 040607          191 QLN-SIILSHGSGVTFPKFLY----HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLT  265 (629)
Q Consensus       191 ~L~-~L~l~~~~~~~~~~~l~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  265 (629)
                      .|+ .+.+..  ...++..+.    ...+++.+.+.++- .......+...+++|+.+++++|.++.+...+|.++.+|+
T Consensus       177 ~L~~~i~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          177 PLETTIQVGA--MGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CCEEEEEECT--TCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccceeEEecC--CCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            443 222221  122332222    34567777777652 2222333444589999999999999999999999999999


Q ss_pred             EEEccCCCCccccc--CCCCCCcc-EEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEc
Q 040607          266 YLDVSDNFFQVHIP--VGNMKSLS-VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQL  340 (629)
Q Consensus       266 ~L~L~~n~~~~~~~--~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  340 (629)
                      .+++.+| +....+  |.++++|+ .+++.+ .++ .++...|.++++|+++++++|.++.+.+.+|.++++|+.+..
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999987 554433  88999999 999988 666 888889999999999999999999999999999999999864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=4.7e-18  Score=170.27  Aligned_cols=258  Identities=16%  Similarity=0.145  Sum_probs=129.9

Q ss_pred             CCCCcEEEccCCcCc--cCCCcccCCCCCCCeeecccccCCcccCccccCC--------CCCCCEEEccCcccccccCCc
Q 040607           90 FVHLQELHVDHNNLY--GVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKH--------LKSIQELKLSNNYFQIPISLG  159 (629)
Q Consensus        90 l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~  159 (629)
                      +++|++|+|++|++.  ......   ++.++.+.+..|    .+|..+|.+        +++|+.|++.+ .++ .++..
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~  118 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDA  118 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTT
T ss_pred             hccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHH
Confidence            556666666666665  222211   222333444333    344445555        66666666666 454 45555


Q ss_pred             ccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCC----CCCc-ChhhcCCCCCC-EEEccCCCCCCCCChhH
Q 040607          160 PLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGS----GVTF-PKFLYHQHDLK-HVNLSHINLRGEFPNWL  233 (629)
Q Consensus       160 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~-~~~l~~~~~L~-~L~L~~n~l~~~~~~~~  233 (629)
                      +|..+++|+.+++++|.+....+ ..|..+.++..+......    ...+ ...+..+..|+ .+.+...   +.++..+
T Consensus       119 aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~  194 (329)
T 3sb4_A          119 AFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEI  194 (329)
T ss_dssp             TTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHH
T ss_pred             HhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHH
Confidence            66666666666666666554333 334444444444433210    0111 12233444444 3433322   1233333


Q ss_pred             Hhc---CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEeccCCCCCcccchhhhhCC
Q 040607          234 SEN---NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGC  308 (629)
Q Consensus       234 ~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  308 (629)
                      +..   ..++..+.+.++-...........+++|+.+++++|.+....+  |..+.+|+.+++.+| +. .++...|.++
T Consensus       195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~  272 (329)
T 3sb4_A          195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNC  272 (329)
T ss_dssp             HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred             hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCC
Confidence            322   2334444444331111000011125566666666666554433  666666666666665 44 5666666666


Q ss_pred             CCCc-EEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCcee
Q 040607          309 FSLR-YLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLY  363 (629)
Q Consensus       309 ~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  363 (629)
                      ++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+.+|.++++|+.++
T Consensus       273 ~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          273 GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            6666 666665 55555566666666666666666666656666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.1e-17  Score=179.76  Aligned_cols=189  Identities=21%  Similarity=0.336  Sum_probs=99.2

Q ss_pred             CccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceec
Q 040607          285 SLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYL  364 (629)
Q Consensus       285 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  364 (629)
                      .+..+.+..+.+.+.++..   .+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++
T Consensus        22 ~l~~l~l~~~~i~~~~~~~---~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHH---HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccchh---cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            3445556666655333321   256777777777776643 2 46667777777777777665433  666677777777


Q ss_pred             cccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeec
Q 040607          365 SDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDL  444 (629)
Q Consensus       365 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L  444 (629)
                      ++|.+.+ ++ .+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..        +++|+.|+|
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~--------l~~L~~L~L  160 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR--------LTKLDTLSL  160 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGS--------CTTCSEEEC
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcc--------cCCCCEEEC
Confidence            7776653 22 455555555555555555532  2344555555555555554432  22222        444455555


Q ss_pred             ccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607          445 SCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT  498 (629)
Q Consensus       445 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  498 (629)
                      ++|.+++..|  +..+++|+.|+|++|.++++  ..+..+++|+.|+|++|+++
T Consensus       161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          161 EDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             cCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            5554443322  44444455555555444443  12444444444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=1.6e-17  Score=152.06  Aligned_cols=131  Identities=25%  Similarity=0.397  Sum_probs=84.7

Q ss_pred             cEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCC
Q 040607          408 QILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQT  487 (629)
Q Consensus       408 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  487 (629)
                      +.+++++|.+.. +|..+          .++++.|++++|.++ .+|..|..+++|+.|+|++|.|+++.+..|.++++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~----------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI----------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC----------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCCc-CCCCC----------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            456666666543 23322          345666666666666 555666666777777777777766666666677777


Q ss_pred             CEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          488 ESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       488 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      ++|++++|+|++..|..|..+++|+.|++++|+++...+..+..+++++.+++++|||.| +|.
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C-~c~  143 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC-DCN  143 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC-SGG
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec-CCc
Confidence            777777777766666666667777777777777766555556666666777777777766 553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.5e-17  Score=178.79  Aligned_cols=164  Identities=20%  Similarity=0.249  Sum_probs=92.9

Q ss_pred             EeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccc
Q 040607          243 LVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMK  322 (629)
Q Consensus       243 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  322 (629)
                      +.+..+.+..+.  .+..+++|+.|++++|.+.....+..+++|+.|+|++|.+.+ ++.  +..+++|+.|+|++|.+.
T Consensus        26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCC
T ss_pred             HhccCCCccccc--chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCC
Confidence            344444444332  244566677777777776655556666777777777776663 333  334666777777777666


Q ss_pred             cccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcccc
Q 040607          323 GHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC  402 (629)
Q Consensus       323 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  402 (629)
                      +.  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +.
T Consensus       101 ~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~  172 (605)
T 1m9s_A          101 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA  172 (605)
T ss_dssp             CC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence            42  2456666666666666666542  3455666666666666665543  344555555555555555554333  44


Q ss_pred             CCCcccEEEcccCcCCC
Q 040607          403 QLNFLQILDISKKNIFG  419 (629)
Q Consensus       403 ~l~~L~~L~l~~n~l~~  419 (629)
                      .+++|+.|+|++|.+.+
T Consensus       173 ~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             TCTTCCEEECCSSCCCB
T ss_pred             cCCCCCEEECcCCCCCC
Confidence            55555555555554433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=2.9e-17  Score=150.41  Aligned_cols=132  Identities=23%  Similarity=0.298  Sum_probs=95.4

Q ss_pred             ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCC-CcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607          384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPS-CFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR  462 (629)
Q Consensus       384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  462 (629)
                      +.++++++.+. .+|..+.  +++++|++++|.+.+..+. .+..        +++|+.|++++|.+++..|..|.++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR--------LPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG--------CTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc--------CCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            56777777776 3444332  2777777877777666554 3444        677777777777777666777777777


Q ss_pred             cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |++|+|++|++++.++..|.++++|++|++++|++++..|..|..+++|++|++++|++.|.++
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            7777777777777777777777777777777777777777777777777777777777777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.7e-17  Score=150.62  Aligned_cols=172  Identities=20%  Similarity=0.240  Sum_probs=120.5

Q ss_pred             CceeccccccCCCccccccCCCCCccccCCCCcccCCCCc-cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccC
Q 040607          360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPM-EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS  438 (629)
Q Consensus       360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  438 (629)
                      +.+++++|.+. .+|..+.  ..++.|++++|.+.+..+. .|..+++|++|++++|.+.+..|..+..        +++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG--------ASH   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT--------CTT
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC--------ccc
Confidence            67888888876 4555443  3788888888888766654 4788888888888888888877777766        788


Q ss_pred             CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCc-cccCCCCCCEEEcc
Q 040607          439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP-QLVELNALAVFSVA  517 (629)
Q Consensus       439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~  517 (629)
                      |+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|.+++..+- .+..  .++...+.
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~  157 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLN  157 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCC
Confidence            88888888888877777788888888888888888888888888888888888888888754332 1110  12222334


Q ss_pred             cCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          518 HNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       518 ~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      .+...|..|..+   ......++..+.+.|
T Consensus       158 ~~~~~C~~P~~l---~~~~l~~l~~~~~~C  184 (192)
T 1w8a_A          158 GGAARCGAPSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             GGGCBBCSSTTT---TTSBGGGSCTTTCCC
T ss_pred             CCCCCCCCChHH---cCCChhhCcHhhcCc
Confidence            455555555433   233344566666655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.2e-17  Score=151.02  Aligned_cols=153  Identities=17%  Similarity=0.269  Sum_probs=103.4

Q ss_pred             ccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCC
Q 040607          355 NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGK  434 (629)
Q Consensus       355 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  434 (629)
                      .+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..  +..+..+++|++|++++|.+.+..+..+..       
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-------  110 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG-------  110 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-------
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC-------
Confidence            3444555555555554 222 34455555555555554432  235666777888888887777656666655       


Q ss_pred             CccCCCeeecccccCCCCCccccccccccceEeccCcc-ccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCE
Q 040607          435 PLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNK-LTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAV  513 (629)
Q Consensus       435 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  513 (629)
                       +++|+.|++++|.+++..+..+..+++|++|++++|. ++.. + .+.++++|++|++++|++++ ++ .+..+++|+.
T Consensus       111 -l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          111 -LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             -CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             -CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence             7788888888888876667778888888888888887 6654 3 57888888888888888885 33 6778888888


Q ss_pred             EEcccCcCcc
Q 040607          514 FSVAHNKLSG  523 (629)
Q Consensus       514 L~l~~N~l~~  523 (629)
                      |++++|++..
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            8888888753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.71  E-value=5e-16  Score=159.60  Aligned_cols=333  Identities=13%  Similarity=0.117  Sum_probs=162.7

Q ss_pred             ccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcc
Q 040607           81 TILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGP  160 (629)
Q Consensus        81 ~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  160 (629)
                      +|...+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++.++ ++ .++..+|.++++|+.+.+..+- . .+...+
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~a  135 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEA  135 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eeccee
Confidence            455556666666666666533 55566666666666666666544 44 5555566666666665554432 2 233334


Q ss_pred             cCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCC
Q 040607          161 LYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL  240 (629)
Q Consensus       161 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L  240 (629)
                      |..+..+..........  .                        -...|..+++|+.+.+..+- . .++...|..+++|
T Consensus       136 F~~~~~~~~~~~~~~~~--i------------------------~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L  187 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTV--I------------------------GDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKL  187 (394)
T ss_dssp             TTTCCCSEEECCTTCCE--E------------------------CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTC
T ss_pred             eecccccccccCccccc--c------------------------chhhhcccCCCcEEecCCcc-c-eeccccccCCCCc
Confidence            44443222222111110  0                        01234455556666554432 1 2334444555666


Q ss_pred             cEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcc
Q 040607          241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNK  320 (629)
Q Consensus       241 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  320 (629)
                      +.+.+..+ ++.+...+|..+..|+.+.+..+.......+.....|+.+.+... ++ .+....+.++..++.+.+..+.
T Consensus       188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~  264 (394)
T 4fs7_A          188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNK  264 (394)
T ss_dssp             CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTT
T ss_pred             eEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCc
Confidence            66655443 444455556566666555554433221111223345555555432 22 3444444455555555555443


Q ss_pred             cccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcc
Q 040607          321 MKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPME  400 (629)
Q Consensus       321 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  400 (629)
                      .. .....|..+..++.+....+.+   ....|..+.+|+.+.+.++                         +......+
T Consensus       265 ~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-------------------------i~~I~~~a  315 (394)
T 4fs7_A          265 LR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-------------------------VKFIGEEA  315 (394)
T ss_dssp             CE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-------------------------CCEECTTT
T ss_pred             ce-eeccccccccccceeccCceee---ccccccccccccccccccc-------------------------cceechhh
Confidence            22 3344555555555555444321   2234444555555544332                         22222334


Q ss_pred             ccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccccc
Q 040607          401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILST  480 (629)
Q Consensus       401 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  480 (629)
                      |.++.+|+.+++.. .+......+|.+        +.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++. ...+
T Consensus       316 F~~c~~L~~i~lp~-~v~~I~~~aF~~--------c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~  383 (394)
T 4fs7_A          316 FESCTSLVSIDLPY-LVEEIGKRSFRG--------CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYD  383 (394)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTTT--------CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGG
T ss_pred             hcCCCCCCEEEeCC-cccEEhHHhccC--------CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhhe
Confidence            45555555555532 233333444444        566666666554 44344566777777777777654 222 2345


Q ss_pred             ccCCCCCCEE
Q 040607          481 FSNLKQTESL  490 (629)
Q Consensus       481 ~~~l~~L~~L  490 (629)
                      |.++++|+.+
T Consensus       384 F~~c~~L~~I  393 (394)
T 4fs7_A          384 FEDTTKFKWI  393 (394)
T ss_dssp             BCTTCEEEEE
T ss_pred             ecCCCCCcEE
Confidence            6677666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=3.8e-17  Score=157.65  Aligned_cols=167  Identities=16%  Similarity=0.207  Sum_probs=106.4

Q ss_pred             CcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEccc
Q 040607          335 LWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK  414 (629)
Q Consensus       335 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  414 (629)
                      +..++++++.++...  .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            444444554444221  34455555555555555542 22 34555556666666665554333  66666777777777


Q ss_pred             CcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcC
Q 040607          415 KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSY  494 (629)
Q Consensus       415 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  494 (629)
                      |.+.+..+..           .++|+.|++++|.+++ ++ .+..+++|+.|++++|+++++.  .+..+++|++|++++
T Consensus        95 N~l~~l~~~~-----------~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           95 NRLKNLNGIP-----------SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             SCCSCCTTCC-----------CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTT
T ss_pred             CccCCcCccc-----------cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCC
Confidence            7665432211           1567777777777773 33 5777888888888888887753  577788888888888


Q ss_pred             CcCCCCCCccccCCCCCCEEEcccCcCccc
Q 040607          495 NKLTGKIPPQLVELNALAVFSVAHNKLSGK  524 (629)
Q Consensus       495 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  524 (629)
                      |++++.  ..+..+++|+.|++++|++.+.
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            888755  5677788888888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=8.6e-16  Score=157.84  Aligned_cols=316  Identities=11%  Similarity=0.044  Sum_probs=193.7

Q ss_pred             ccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccC
Q 040607           53 ALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNIS  132 (629)
Q Consensus        53 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~  132 (629)
                      .++.+...+|.+|++|+.+.+..+ ++ .|...+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+.
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~  132 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIG  132 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EEC
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eec
Confidence            356666788999999999999754 66 888889999999999999865 77888889999999999988765 44 666


Q ss_pred             ccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCC
Q 040607          133 SPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ  212 (629)
Q Consensus       133 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~  212 (629)
                      ..+|.++..++........   .+...+|.++++|+.+.+..+..  ......|..+.+|+.+.+..+....-...+..+
T Consensus       133 ~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~  207 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAEC  207 (394)
T ss_dssp             TTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred             ceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCCceEeCchhhccc
Confidence            6678887655444433332   34456788999999999976542  233345566667777776654333334456666


Q ss_pred             CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-ccccCCCCCCccEEec
Q 040607          213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-VHIPVGNMKSLSVLDL  291 (629)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~L~~L~L  291 (629)
                      ..|+.+.+..+...  +.... ...+.|+.+.+.. .++.+...+|..+..++.+.+..+... ....|..+..++.+..
T Consensus       208 ~~L~~i~~~~~~~~--i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          208 ILLENMEFPNSLYY--LGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             TTCCBCCCCTTCCE--ECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred             cccceeecCCCceE--eehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence            66776666554322  22222 2345666666643 234445556666666666666554332 1122555566666555


Q ss_pred             cCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCC
Q 040607          292 SKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG  371 (629)
Q Consensus       292 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  371 (629)
                      ...    .++...|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ +..
T Consensus       284 ~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~  356 (394)
T 4fs7_A          284 GSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK  356 (394)
T ss_dssp             CSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred             Cce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence            443    234444555666666666543 44455555666666666666433 44444555556666666555444 332


Q ss_pred             CccccccCCCCCccccCC
Q 040607          372 KIPRWLGNLSVSEDVIMP  389 (629)
Q Consensus       372 ~~~~~~~~l~~L~~L~l~  389 (629)
                      +-..+|.+|++|+.+++.
T Consensus       357 I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          357 IGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ECTTTBTTCTTCCEEEEE
T ss_pred             ehHHHhhCCCCCCEEEEC
Confidence            333445555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=2.5e-19  Score=191.49  Aligned_cols=204  Identities=20%  Similarity=0.179  Sum_probs=132.5

Q ss_pred             CCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCC
Q 040607          281 GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFG  360 (629)
Q Consensus       281 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  360 (629)
                      ..+++|+.|++++|++. .+|..+.. +++|++|++++|......+..           +..+...+..|..+..+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence            34455555666665554 55555543 555555555444311111100           011123445566666777777


Q ss_pred             cee-ccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCC
Q 040607          361 GLY-LSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSM  439 (629)
Q Consensus       361 ~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  439 (629)
                      .|+ ++.|.+           ..|..+.+.+|.+....+      ..|+.|++++|.+.+ +|. +..        +++|
T Consensus       413 ~L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~--------l~~L  465 (567)
T 1dce_A          413 AVDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ--------LLLV  465 (567)
T ss_dssp             HHCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG--------GTTC
T ss_pred             cCcchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc--------cccC
Confidence            766 554433           233344444454442211      247888888888866 344 555        7888


Q ss_pred             CeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCC-CccccCCCCCCEEEccc
Q 040607          440 SGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI-PPQLVELNALAVFSVAH  518 (629)
Q Consensus       440 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~  518 (629)
                      +.|+|++|.++ .+|..+..+++|+.|+|++|.++++ | .|.++++|+.|++++|++++.. |..+..+++|+.|++++
T Consensus       466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence            88888888888 7788888888888888888888874 4 6888888889999888888776 88888888888999988


Q ss_pred             CcCcccCCC
Q 040607          519 NKLSGKTPD  527 (629)
Q Consensus       519 N~l~~~~~~  527 (629)
                      |++++..|.
T Consensus       543 N~l~~~~~~  551 (567)
T 1dce_A          543 NSLCQEEGI  551 (567)
T ss_dssp             SGGGGSSSC
T ss_pred             CcCCCCccH
Confidence            888877664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=2.3e-19  Score=191.88  Aligned_cols=216  Identities=16%  Similarity=0.126  Sum_probs=158.2

Q ss_pred             ccCCCccEEEccCCCCccccc-CCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcE
Q 040607          259 HARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR  337 (629)
Q Consensus       259 ~~~~~L~~L~L~~n~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  337 (629)
                      ...++|+.|++++|.+...+. ++.+++|+.|++++|......+....            .+...+..|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhccc
Confidence            567889999999999985544 78889999999976642212221111            11233455666777777877


Q ss_pred             EE-ccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCc
Q 040607          338 LQ-LDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKN  416 (629)
Q Consensus       338 L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  416 (629)
                      |+ ++.|.+           ..|..+.+++|.+....+      ..|+.|++++|.+++ +|. +..+++|+.|++++|.
T Consensus       414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~  474 (567)
T 1dce_A          414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR  474 (567)
T ss_dssp             HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred             Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence            77 555533           235556666676653222      247788888888885 454 8888899999999998


Q ss_pred             CCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccc-cccccCCCCCCEEECcCC
Q 040607          417 IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLI-LSTFSNLKQTESLDLSYN  495 (629)
Q Consensus       417 l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N  495 (629)
                      +. .+|..+..        +++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..|.++++|+.|++++|
T Consensus       475 l~-~lp~~~~~--------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          475 LR-ALPPALAA--------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CC-CCCGGGGG--------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cc-ccchhhhc--------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            87 56777766        8899999999999985 66 7889999999999999999887 888999999999999999


Q ss_pred             cCCCCCCcc---ccCCCCCCEEEc
Q 040607          496 KLTGKIPPQ---LVELNALAVFSV  516 (629)
Q Consensus       496 ~l~~~~~~~---~~~l~~L~~L~l  516 (629)
                      ++++..|..   +..+|+|+.|++
T Consensus       544 ~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          544 SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCccHHHHHHHHCcccCccCC
Confidence            998665532   334788998864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=8.2e-17  Score=155.29  Aligned_cols=168  Identities=20%  Similarity=0.281  Sum_probs=123.8

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      .+..++++.+.+++..  .+.++++|++|++++|.++ .++  .+..+++|++|++++|+++++++  +.++++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            4557788888887543  5778899999999999887 676  58888999999999999988776  888999999999


Q ss_pred             ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCC
Q 040607          123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSG  202 (629)
Q Consensus       123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~  202 (629)
                      ++|.++ .++.  +.. ++|++|++++|.+++ +  ..+..+++|+.|++++|.+...                      
T Consensus        93 ~~N~l~-~l~~--~~~-~~L~~L~L~~N~l~~-~--~~l~~l~~L~~L~Ls~N~i~~~----------------------  143 (263)
T 1xeu_A           93 NRNRLK-NLNG--IPS-ACLSRLFLDNNELRD-T--DSLIHLKNLEILSIRNNKLKSI----------------------  143 (263)
T ss_dssp             CSSCCS-CCTT--CCC-SSCCEEECCSSCCSB-S--GGGTTCTTCCEEECTTSCCCBC----------------------
T ss_pred             CCCccC-CcCc--ccc-CcccEEEccCCccCC-C--hhhcCcccccEEECCCCcCCCC----------------------
Confidence            999988 6664  333 889999999988873 3  2477788888888888876432                      


Q ss_pred             CCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCcccccc
Q 040607          203 VTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGI  253 (629)
Q Consensus       203 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~  253 (629)
                         + .+..+++|++|++++|++.+.  .. +..+++|+.|++++|.+...
T Consensus       144 ---~-~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 ---V-MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ---G-GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEEEEEEEECC
T ss_pred             ---h-HHccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeCCCCcccCC
Confidence               1 355566777777777777643  22 24556666666666665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=3.5e-15  Score=152.41  Aligned_cols=261  Identities=10%  Similarity=0.094  Sum_probs=137.3

Q ss_pred             CCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCE
Q 040607           65 MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQE  144 (629)
Q Consensus        65 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~  144 (629)
                      +..++.+.+..+ ++ .|+..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .++ .++..+|.+|++|+.
T Consensus       112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            355555655542 33 5555556554 5666666554 555555566653 466666654 444 555556666666666


Q ss_pred             EEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCC
Q 040607          145 LKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHIN  224 (629)
Q Consensus       145 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~  224 (629)
                      +++.+|.++ .++...|. +.+|+.+.+..+ +...                        -...|..+++|+.+++..+ 
T Consensus       185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I------------------------~~~aF~~~~~L~~l~l~~~-  236 (401)
T 4fdw_A          185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEI------------------------GSQAFLKTSQLKTIEIPEN-  236 (401)
T ss_dssp             EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEE------------------------CTTTTTTCTTCCCEECCTT-
T ss_pred             eecCCCcce-EechhhEe-ecccCEEEeCCc-hhee------------------------hhhHhhCCCCCCEEecCCC-
Confidence            666665555 44444444 355555555433 2211                        1234555666666666553 


Q ss_pred             CCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-----c--cccCCCCCCccEEeccCCCCC
Q 040607          225 LRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-----V--HIPVGNMKSLSVLDLSKNRLI  297 (629)
Q Consensus       225 l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~--~~~~~~~~~L~~L~L~~n~l~  297 (629)
                      +. .++...|.. .+|+.+.+ .+.++.+...+|.++++|+.+++.++.+.     .  ...|..+++|+.+++.+ .+.
T Consensus       237 l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~  312 (401)
T 4fdw_A          237 VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR  312 (401)
T ss_dssp             CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred             cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence            33 333333344 56666666 34456666667777777777777665543     1  11155555555555552 233


Q ss_pred             cccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccc-cCCceecccc
Q 040607          298 GKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCN-LFGGLYLSDN  367 (629)
Q Consensus       298 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n  367 (629)
                       .++...|.++.+|+.+++..+ ++.+...+|.++ +|+.+++.+|......+..|.+++ .++.|.+..+
T Consensus       313 -~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          313 -ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             -EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             -EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence             455555555555555555433 444444555555 555555555554444444444442 3444444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.9e-16  Score=145.83  Aligned_cols=152  Identities=14%  Similarity=0.096  Sum_probs=98.5

Q ss_pred             ccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEE
Q 040607          259 HARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRL  338 (629)
Q Consensus       259 ~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  338 (629)
                      ..+++|+.|++++|.+.....+..+++|++|++++|.+. .++ . +..+++|++|++++|.+++..+..+..+++|+.|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            445556666666666654444566667777777777554 332 2 2346777777777777776666777777778888


Q ss_pred             EccCCcCcccCchhhhccccCCceeccccc-cCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcC
Q 040607          339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNH-LSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNI  417 (629)
Q Consensus       339 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  417 (629)
                      ++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+. + .+..+++|++|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            888777776667777777777777777776 44 333 466666666666666666642 2 456666666666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=1.9e-15  Score=154.47  Aligned_cols=265  Identities=13%  Similarity=0.144  Sum_probs=149.7

Q ss_pred             CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEecc
Q 040607          213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS  292 (629)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~  292 (629)
                      ..++.+.+.. .++ .++...|..+ +|+.+.+.++ ++.+...+|.++ +|+.+.+..                     
T Consensus       113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~---------------------  166 (401)
T 4fdw_A          113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS---------------------  166 (401)
T ss_dssp             SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT---------------------
T ss_pred             CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC---------------------
Confidence            4556666553 233 2333333333 5666665543 555555555553 455555543                     


Q ss_pred             CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCC
Q 040607          293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGK  372 (629)
Q Consensus       293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  372 (629)
                        .+. .+....|.++++|+.+++.+|+++.+....|. ..+|+.+.+..+ +..+...+|.+|++|+.+++..+ +..+
T Consensus       167 --~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I  240 (401)
T 4fdw_A          167 --TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI  240 (401)
T ss_dssp             --TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred             --Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence              222 33333444444444444444444443333343 244444444422 33333444444444444444432 2222


Q ss_pred             ccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCC-----CCCCCCcCCCccccCCCccCCCeeecccc
Q 040607          373 IPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF-----GSLPSCFNPFSIKQGKPLNSMSGLDLSCN  447 (629)
Q Consensus       373 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  447 (629)
                      ...+|.+ .+|+.+.+. +.+.......|.++++|+.+++.+|.+.     ...+.+|.+        +++|+.+++.+ 
T Consensus       241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~--------c~~L~~l~l~~-  309 (401)
T 4fdw_A          241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG--------CPKLARFEIPE-  309 (401)
T ss_dssp             CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT--------CTTCCEECCCT-
T ss_pred             ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC--------CccCCeEEeCC-
Confidence            2333433 445555552 2233344556677777777777666543     344455555        77888888874 


Q ss_pred             cCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCC-CCCEEEcccCcCc
Q 040607          448 KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELN-ALAVFSVAHNKLS  522 (629)
Q Consensus       448 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~  522 (629)
                      .++.....+|.+|++|+.+++..| ++.+...+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            466566678888888888888654 777777888888 888888888888777777787774 6788888776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.3e-15  Score=137.69  Aligned_cols=133  Identities=20%  Similarity=0.243  Sum_probs=97.9

Q ss_pred             CccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607          383 SEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR  462 (629)
Q Consensus       383 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  462 (629)
                      .+.++++++.+... |..+  .++|++|++++|.+.+..+..+..        +++|+.|++++|.+++..+..+..+++
T Consensus         9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDK--------LTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTT--------CTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcC--------cccccEEECCCCcceEeChhHccCCCc
Confidence            45677777777643 3322  357888888888877666666555        678888888888887666666777888


Q ss_pred             cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |++|++++|.+++.++..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.+|
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8888888888887777777778888888888888876666566777888888888888877665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=3.6e-16  Score=139.99  Aligned_cols=136  Identities=21%  Similarity=0.292  Sum_probs=106.8

Q ss_pred             hcccceeeccCcccC-ccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCe
Q 040607           41 QCFIGFRAMDGTALD-KNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQV  119 (629)
Q Consensus        41 ~~~l~~L~l~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  119 (629)
                      +..+++|++++|.++ +.+|..+..+++|++|++++|.++ .+  ..+..+++|++|++++|.+++..|..+.++++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            356788888888887 667777788888888888888887 45  36888888888888888888877767777888889


Q ss_pred             eecccccCCcccCc-cccCCCCCCCEEEccCcccccccCC---cccCCCCCCcEEECCCCcceeec
Q 040607          120 LNISSNQLTGNISS-PPLKHLKSIQELKLSNNYFQIPISL---GPLYNHSNLKIFDSENNQIYAQT  181 (629)
Q Consensus       120 L~L~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~  181 (629)
                      |++++|.++ .++. ..+..+++|++|++++|.++ ..+.   ..+..+++|+.|++++|.+....
T Consensus       100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            998888887 5542 37888888899999888887 3443   36778888888888888775543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=139.07  Aligned_cols=130  Identities=22%  Similarity=0.240  Sum_probs=105.8

Q ss_pred             cccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccc
Q 040607          385 DVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIH  464 (629)
Q Consensus       385 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  464 (629)
                      .++++++.+.. +|..+  .++|++|++++|.+. .+|..+..        +++|+.|++++|.+++..+..|.++++|+
T Consensus        14 ~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~--------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A           14 VVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSN--------YKHLTLIDLSNNRISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             EEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGG--------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhc--------ccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence            34555555552 33322  246888888888875 44556655        78888999999999877778899999999


Q ss_pred             eEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          465 TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       465 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      +|+|++|.++++++..|.++++|+.|++++|+++...+..|..+++|+.|++++|++.|.+.
T Consensus        82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            99999999999999999999999999999999997777789999999999999999998776

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=8.9e-16  Score=137.43  Aligned_cols=134  Identities=20%  Similarity=0.243  Sum_probs=106.5

Q ss_pred             CCCccccCCCCccc-CCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607          381 SVSEDVIMPNNHLE-GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN  459 (629)
Q Consensus       381 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  459 (629)
                      +.++.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..        +++|+.|++++|.+++.+|..+..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK--------LPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------CSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------CCCCCEEECcCCcCchHHHHHHhh
Confidence            56777777777776 55666678888888888888887665  44444        788888999999888667777777


Q ss_pred             ccccceEeccCcccccccc-ccccCCCCCCEEECcCCcCCCCCC---ccccCCCCCCEEEcccCcCccc
Q 040607          460 LTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKLTGKIP---PQLVELNALAVFSVAHNKLSGK  524 (629)
Q Consensus       460 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~  524 (629)
                      +++|++|++++|.+++.+. ..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+...
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            8999999999999887643 678888999999999999986555   4788889999999999888743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=2.3e-16  Score=174.09  Aligned_cols=181  Identities=17%  Similarity=0.180  Sum_probs=98.2

Q ss_pred             ccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccC
Q 040607          324 HIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQ  403 (629)
Q Consensus       324 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  403 (629)
                      ..+..|..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            44566677777777777777776 45555557777777777777777 66677777777777777777777 55777777


Q ss_pred             CCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc-cceEeccCcccccccccccc
Q 040607          404 LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR-IHTLNVSHNKLTGLILSTFS  482 (629)
Q Consensus       404 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~  482 (629)
                      +++|++|+|++|.+. .+|..+..        +++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.   
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---  359 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGN--------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---  359 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTS--------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---
T ss_pred             CCCCCEEECCCCCCC-ccChhhhc--------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---
Confidence            777777777777774 44555655        777777788877777666666654422 23467777777766554   


Q ss_pred             CCCCCCEEECcCC--------cCCCCCCccccCCCCCCEEEcccCcCc
Q 040607          483 NLKQTESLDLSYN--------KLTGKIPPQLVELNALAVFSVAHNKLS  522 (629)
Q Consensus       483 ~l~~L~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~l~~N~l~  522 (629)
                         .|+.|++++|        .+.+..+..+..+..++...+++|-+.
T Consensus       360 ---~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          360 ---ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ---C-----------------------------------------CCC
T ss_pred             ---ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence               3455666665        333334444455556666677777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=3.3e-15  Score=134.96  Aligned_cols=134  Identities=22%  Similarity=0.251  Sum_probs=104.4

Q ss_pred             cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607          406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK  485 (629)
Q Consensus       406 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  485 (629)
                      +.+.++++++.+... |..+          .++|+.|++++|.+++..+..+..+++|++|++++|.++++++..|.+++
T Consensus         8 ~~~~l~~~~~~l~~~-p~~~----------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSV-PTGI----------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT   76 (177)
T ss_dssp             ETTEEECCSSCCSSC-CTTC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEEecCCCCccC-CCCC----------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC
Confidence            356788888877543 3322          46788888888888866666778888888888888888887777788888


Q ss_pred             CCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          486 QTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       486 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++++.+++++||+.| .|+
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-~~~  141 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCP  141 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-CHH
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec-cCc
Confidence            88888888888887777777888888888888888887666666778888888888888887 553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=1.9e-16  Score=174.77  Aligned_cols=162  Identities=20%  Similarity=0.245  Sum_probs=121.2

Q ss_pred             EccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCC
Q 040607          339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF  418 (629)
Q Consensus       339 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  418 (629)
                      ++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..++.|+.|+|++|.++ .+|..+..+++|++|+|++|.+.
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            34445554 56788999999999999999998 66666778999999999999999 78888999999999999999998


Q ss_pred             CCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCC-CCEEECcCCcC
Q 040607          419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQ-TESLDLSYNKL  497 (629)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l  497 (629)
                       .+|..+..        +++|+.|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+
T Consensus       284 -~lp~~~~~--------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          284 -SLPAELGS--------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             -SCCSSGGG--------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             -ccChhhcC--------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence             66888876        899999999999998 77888999999999999999999998887764422 23478999999


Q ss_pred             CCCCCccccCCCCCCEEEcccC
Q 040607          498 TGKIPPQLVELNALAVFSVAHN  519 (629)
Q Consensus       498 ~~~~~~~~~~l~~L~~L~l~~N  519 (629)
                      ++.+|.      .|+.|++++|
T Consensus       354 ~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          354 EIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCCCCC------C---------
T ss_pred             cCcCcc------ccceeEeecc
Confidence            988775      4566777777

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.5e-15  Score=132.97  Aligned_cols=127  Identities=20%  Similarity=0.257  Sum_probs=84.9

Q ss_pred             CCCccccCCCCccc-CCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCcccccc
Q 040607          381 SVSEDVIMPNNHLE-GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGN  459 (629)
Q Consensus       381 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  459 (629)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..        +++|+.|++++|.+++.+|..+..
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK--------LNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------CTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------CCCCCEEECCCCcccchHHHHhhh
Confidence            45556666666665 44555566667777777777766554  33333        677777777777777556666666


Q ss_pred             ccccceEeccCccccccc-cccccCCCCCCEEECcCCcCCCCCC---ccccCCCCCCEEEcc
Q 040607          460 LTRIHTLNVSHNKLTGLI-LSTFSNLKQTESLDLSYNKLTGKIP---PQLVELNALAVFSVA  517 (629)
Q Consensus       460 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~  517 (629)
                      +++|++|++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|+.||++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777777777777777642 3567777777777777777775544   466777777777765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.60  E-value=1.7e-13  Score=140.71  Aligned_cols=299  Identities=14%  Similarity=0.170  Sum_probs=187.1

Q ss_pred             cCccchhhhcCCC-CCCEEEccCCcCCCccCccccCCCCCCcEEEccCCc---CccCCCcccCCCCCCCeeecccccCCc
Q 040607           54 LDKNFLQVIKSMT-SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNN---LYGVPPWCLGNMTSLQVLNISSNQLTG  129 (629)
Q Consensus        54 ~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~  129 (629)
                      ++.+...+|.+++ .|+.+.+..+ ++ .|...+|.++.+|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++ 
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-  126 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-  126 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-
Confidence            4455567788885 5999999765 66 8888899999999999998763   77788889999999999988765 55 


Q ss_pred             ccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhh
Q 040607          130 NISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL  209 (629)
Q Consensus       130 ~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  209 (629)
                      .++..+|..+.+|+.+.+..+. . .+....|..+..|+.+.+..+- ... ....|. ...|+.+.+.......-...+
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~~-~~I-~~~aF~-~~~l~~i~ip~~~~~i~~~af  201 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDSV-TAI-EERAFT-GTALTQIHIPAKVTRIGTNAF  201 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTTC-CEE-CTTTTT-TCCCSEEEECTTCCEECTTTT
T ss_pred             eehhhhhhhhccccccccccee-e-eecccceeccccccccccccee-eEe-cccccc-ccceeEEEECCcccccccchh
Confidence            7887789999999999997653 3 4566789999999999998653 222 223333 357888888765554445667


Q ss_pred             cCCCCCCEEEccCCCCCCCCChhHHhc-------------CCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-
Q 040607          210 YHQHDLKHVNLSHINLRGEFPNWLSEN-------------NTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-  275 (629)
Q Consensus       210 ~~~~~L~~L~L~~n~l~~~~~~~~~~~-------------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-  275 (629)
                      ..+..++.......... .....++..             ...+..+.+. +.+..+...+|..+..|+.+.+..+... 
T Consensus       202 ~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~I  279 (394)
T 4gt6_A          202 SECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVSI  279 (394)
T ss_dssp             TTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCEE
T ss_pred             hhccccceecccccccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccccee
Confidence            77777887776655433 111111111             1122222222 2334444556666666666666543322 


Q ss_pred             ccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhc
Q 040607          276 VHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSN  355 (629)
Q Consensus       276 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  355 (629)
                      +...|.+++.|+.+.+. +.+. .++...|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+
T Consensus       280 ~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~  355 (394)
T 4gt6_A          280 GTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN  355 (394)
T ss_dssp             CTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred             cCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence            12225555666666664 2333 555555555666666666543 44444555556666666665433 44444555555


Q ss_pred             cccCCceecccc
Q 040607          356 CNLFGGLYLSDN  367 (629)
Q Consensus       356 l~~L~~L~l~~n  367 (629)
                      |++|+.+++.++
T Consensus       356 C~~L~~i~~~~~  367 (394)
T 4gt6_A          356 CTALNNIEYSGS  367 (394)
T ss_dssp             CTTCCEEEESSC
T ss_pred             CCCCCEEEECCc
Confidence            666665555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.1e-15  Score=133.72  Aligned_cols=128  Identities=21%  Similarity=0.264  Sum_probs=105.1

Q ss_pred             cccceeeccCcccC-ccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCee
Q 040607           42 CFIGFRAMDGTALD-KNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL  120 (629)
Q Consensus        42 ~~l~~L~l~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  120 (629)
                      ..+++|++++|.++ +.+|..+..+++|++|++++|.++ .+  ..+..+++|++|++++|.+++..|..+.++++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            56788999999887 678888889999999999999987 55  368899999999999999988677677789999999


Q ss_pred             ecccccCCcccC-ccccCCCCCCCEEEccCcccccccCC---cccCCCCCCcEEECCC
Q 040607          121 NISSNQLTGNIS-SPPLKHLKSIQELKLSNNYFQIPISL---GPLYNHSNLKIFDSEN  174 (629)
Q Consensus       121 ~L~~n~l~~~i~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~  174 (629)
                      ++++|.++ .++ ...+..+++|++|++++|.+++ .+.   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence            99999988 443 1378889999999999998874 333   4678888999888763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=7.5e-15  Score=131.31  Aligned_cols=110  Identities=24%  Similarity=0.234  Sum_probs=93.2

Q ss_pred             cccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607          406 FLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK  485 (629)
Q Consensus       406 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  485 (629)
                      +.+.+++++|.+.. +|..+          .++++.|++++|.+++..|..|..+++|++|+|++|+|+++++..|.+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~----------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~   78 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI----------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT   78 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEEeCCCCcCc-cCccC----------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence            46789999988865 44433          46888999999999877788888999999999999999988888888999


Q ss_pred             CCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          486 QTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       486 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      +|++|++++|++++..+..|..+++|+.|++++|++.+.++
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99999999999997777778889999999999999988776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=2.6e-14  Score=128.17  Aligned_cols=109  Identities=22%  Similarity=0.252  Sum_probs=84.5

Q ss_pred             ccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCC
Q 040607          407 LQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQ  486 (629)
Q Consensus       407 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  486 (629)
                      -+.+++++|.+. .+|..+          .++|+.|+|++|.+++..|..|..+++|++|+|++|+|+++++..|.++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~----------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI----------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC----------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CcEEEeCCCCCC-ccCCCc----------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            367888888774 344443          467888888888888777778888888888888888888877777788888


Q ss_pred             CCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          487 TESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       487 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |++|++++|+|++..+..|..+++|+.|++++|++.+.++
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            8888888888886666668888888888888888887655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=4.9e-14  Score=125.98  Aligned_cols=110  Identities=25%  Similarity=0.300  Sum_probs=92.4

Q ss_pred             CCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607          438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA  517 (629)
Q Consensus       438 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  517 (629)
                      ..+.+++++|.++ .+|..+  .++|++|+|++|.|+++.+..|.++++|++|++++|+|++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4577899999888 566554  3788999999999988888888889999999999999987777778888999999999


Q ss_pred             cCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          518 HNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       518 ~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      +|++++..+..+..+.+++.+++++|||.| .|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c-~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC-ACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT-TBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC-Cch
Confidence            999988777778888889999999999988 664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.3e-14  Score=129.15  Aligned_cols=134  Identities=16%  Similarity=0.111  Sum_probs=87.9

Q ss_pred             ccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccc
Q 040607          377 LGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLR  456 (629)
Q Consensus       377 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  456 (629)
                      +..+++|+.|++++|.+... +......++|++|++++|.+.+.  ..+..        +++|+.|++++|.+++..+..
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~--------l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPL--------LRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCC--------CSSCCEEECCSSCCCEECSCH
T ss_pred             cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--ccccc--------CCCCCEEECCCCcccccCcch
Confidence            34455666666666666633 33222233777777777777654  33433        677777777777777444445


Q ss_pred             cccccccceEeccCcccccccc-ccccCCCCCCEEECcCCcCCCCCCc----cccCCCCCCEEEcccCcCc
Q 040607          457 IGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKLTGKIPP----QLVELNALAVFSVAHNKLS  522 (629)
Q Consensus       457 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~  522 (629)
                      +..+++|++|++++|.++..++ ..+..+++|+.|++++|+++ .+|.    .+..+++|+.||+++|...
T Consensus        84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5777788888888887765433 36777778888888888877 4454    3777788888888877665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.2e-14  Score=129.26  Aligned_cols=133  Identities=17%  Similarity=0.199  Sum_probs=112.0

Q ss_pred             cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccc
Q 040607          400 EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILS  479 (629)
Q Consensus       400 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  479 (629)
                      .+..+++|+.|++++|.+... +. +..       ..++|+.|++++|.+++.  ..+..+++|++|++++|.++++++.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~-------~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGA-------TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGG-------GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhh-------cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc
Confidence            466788999999999999754 43 322       145999999999999854  6788999999999999999988777


Q ss_pred             cccCCCCCCEEECcCCcCCCCCCc--cccCCCCCCEEEcccCcCcccCCC----ccccccccCCCCCCCCCC
Q 040607          480 TFSNLKQTESLDLSYNKLTGKIPP--QLVELNALAVFSVAHNKLSGKTPD----WVAQFATFNGSSYDGNPF  545 (629)
Q Consensus       480 ~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~----~~~~~~~l~~l~~~~np~  545 (629)
                      .|..+++|++|++++|+++ .+|.  .+..+++|+.|++++|++... |.    .+..+++++.+++++|+.
T Consensus        83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence            7799999999999999997 5565  788999999999999999854 54    367889999999988863

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.50  E-value=2.1e-12  Score=132.50  Aligned_cols=336  Identities=10%  Similarity=0.146  Sum_probs=186.5

Q ss_pred             CCCccCccccCCCC-CCcEEEccCCcCccCCCcccCCCCCCCeeeccccc---CCcccCccccCCCCCCCEEEccCcccc
Q 040607           78 LNGTILDQGLCEFV-HLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ---LTGNISSPPLKHLKSIQELKLSNNYFQ  153 (629)
Q Consensus        78 l~~~i~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~i~~~~l~~l~~L~~L~L~~n~l~  153 (629)
                      ++ .|.+.+|.+++ .|+.+.+..+ ++.+...+|.+|++|+.+.+..|.   ++ .|+..+|.++.+|+.+.+..+ ++
T Consensus        51 Vt-~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           51 VS-KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT  126 (394)
T ss_dssp             EE-EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS
T ss_pred             ee-EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc
Confidence            45 67777898885 5999999865 888999999999999999998774   66 788889999999999888765 33


Q ss_pred             cccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhH
Q 040607          154 IPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWL  233 (629)
Q Consensus       154 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~  233 (629)
                       .++...|..+.+|+.+.+..+..  ......+..+..|+.+.+..+... +.........|+.+.+..+-.  .+....
T Consensus       127 -~I~~~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~~~~-I~~~aF~~~~l~~i~ip~~~~--~i~~~a  200 (394)
T 4gt6_A          127 -EIDSEAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDSVTA-IEERAFTGTALTQIHIPAKVT--RIGTNA  200 (394)
T ss_dssp             -EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCCCSEEEECTTCC--EECTTT
T ss_pred             -eehhhhhhhhcccccccccceee--eecccceecccccccccccceeeE-eccccccccceeEEEECCccc--ccccch
Confidence             45667899999999999975432  222334455556666665533222 222111234455555544321  122222


Q ss_pred             HhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcE
Q 040607          234 SENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRY  313 (629)
Q Consensus       234 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  313 (629)
                      +..+..++................+.........         ...+.....+..+.+.. .+. .+....|.++..|+.
T Consensus       201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~  269 (394)
T 4gt6_A          201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYA---------LIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLAS  269 (394)
T ss_dssp             TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE---------EEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCE
T ss_pred             hhhccccceecccccccccccceeeccccccccc---------ccccccccccceEEcCC-cce-EcccceeeecccccE
Confidence            3444444444433322221111111000000000         00012223333444422 222 444555666667777


Q ss_pred             EEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcc
Q 040607          314 LVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL  393 (629)
Q Consensus       314 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  393 (629)
                      +.+..+.. .+...+|.++++|+.+.+. +.++.....+|.+|.+|+.+++..+ ++.+-..+|.+|.+|+.+.+..+ +
T Consensus       270 i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v  345 (394)
T 4gt6_A          270 VKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V  345 (394)
T ss_dssp             EECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C
T ss_pred             Eecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c
Confidence            77665432 3455666667777777765 3344455566777777777777643 33344556777777777777543 4


Q ss_pred             cCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccC
Q 040607          394 EGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL  449 (629)
Q Consensus       394 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  449 (629)
                      +..-..+|.++++|+.+++.++....   ..+..        +.+|+.+.+..+.+
T Consensus       346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~--------~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          346 TKIPESAFSNCTALNNIEYSGSRSQW---NAIST--------DSGLQNLPVAPGSI  390 (394)
T ss_dssp             CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC--------CCCC----------
T ss_pred             CEEhHhHhhCCCCCCEEEECCceeeh---hhhhc--------cCCCCEEEeCCCCE
Confidence            44555667777777777777654311   12222        55667776665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=1.6e-13  Score=123.00  Aligned_cols=109  Identities=20%  Similarity=0.258  Sum_probs=90.5

Q ss_pred             CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607          439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH  518 (629)
Q Consensus       439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  518 (629)
                      -+.+++++|.++ .+|..+.  ++|++|+|++|.++++++..|.++++|++|+|++|+|++..+..|..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367888888887 5666553  7889999999999888888888899999999999999876666778888999999999


Q ss_pred             CcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          519 NKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       519 N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      |++++..+..+..+++++.+++++|||.| .|.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC-ECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT-TBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc-ccc
Confidence            99987777767888888899999999988 553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=5.7e-16  Score=142.74  Aligned_cols=133  Identities=22%  Similarity=0.282  Sum_probs=64.2

Q ss_pred             ccccCCceeccccccCCCccc------cccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCC
Q 040607          355 NCNLFGGLYLSDNHLSGKIPR------WLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPF  428 (629)
Q Consensus       355 ~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  428 (629)
                      ....++.++++.+.+.+..|.      .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+.. +|..+.. 
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~-   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV-   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH-
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc-
Confidence            334444444444444433332      44444444444444444443 23 44455555555555555532 2332222 


Q ss_pred             ccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccc-ccccCCCCCCEEECcCCcCCCC
Q 040607          429 SIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL-STFSNLKQTESLDLSYNKLTGK  500 (629)
Q Consensus       429 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~  500 (629)
                             +++|+.|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++.
T Consensus        92 -------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           92 -------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             -------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence                   3455555555555552 23 34555555555555555554332 3455555555555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=6.1e-16  Score=142.53  Aligned_cols=154  Identities=21%  Similarity=0.219  Sum_probs=129.0

Q ss_pred             ccCCCCCccccCCCCcccCCCCc------cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC
Q 040607          377 LGNLSVSEDVIMPNNHLEGPIPM------EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT  450 (629)
Q Consensus       377 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  450 (629)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..        +++|+.|++++|.++
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~--------l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG--------MENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH--------HTTCCEEEEEEEEEC
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc--------CCCCCEEECCCCCcc
Confidence            44567888889999988888776      89999999999999999977 45 5555        899999999999999


Q ss_pred             CCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCC-ccccCCCCCCEEEcccCcCcccCCCc-
Q 040607          451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIP-PQLVELNALAVFSVAHNKLSGKTPDW-  528 (629)
Q Consensus       451 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~-  528 (629)
                       .+|..+..+++|+.|++++|++++++  .+..+++|++|++++|+++...+ ..+..+++|++|++++|++.+.+|.. 
T Consensus        84 -~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  160 (198)
T 1ds9_A           84 -KIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN  160 (198)
T ss_dssp             -SCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred             -cccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence             67888888899999999999999853  58889999999999999985433 47889999999999999999887652 


Q ss_pred             ---------cccccccCCCCCCCCCC
Q 040607          529 ---------VAQFATFNGSSYDGNPF  545 (629)
Q Consensus       529 ---------~~~~~~l~~l~~~~np~  545 (629)
                               +..+++++.++  +||.
T Consensus       161 ~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          161 ATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             THHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             chHHHHHHHHHhCCCcEEEC--Cccc
Confidence                     56667777664  6664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=9.6e-13  Score=132.72  Aligned_cols=129  Identities=14%  Similarity=0.160  Sum_probs=106.7

Q ss_pred             cEEEcccC-cCCCCCCCCcCCCccccCCCccCCCeeeccc-ccCCCCCccccccccccceEeccCccccccccccccCCC
Q 040607          408 QILDISKK-NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSC-NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLK  485 (629)
Q Consensus       408 ~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  485 (629)
                      ..++.+++ .+.+ +|. +..        +++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|+++++..|.+++
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~--------~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPG--------AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCS--------CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CEEEcCCCCCCCc-cCC-CCC--------CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            45788888 7765 555 665        78999999996 999977778899999999999999999999999999999


Q ss_pred             CCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC-CccccccccCCCCCCCCCCCC
Q 040607          486 QTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP-DWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       486 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~l~~~~np~~c  547 (629)
                      +|+.|+|++|+|++..+..|..++ |+.|++++|++.+.++ .++..+.......++.+.+.|
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C  142 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQC  142 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCC
T ss_pred             CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCC
Confidence            999999999999977777777666 9999999999998877 445555444555666677777

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=1.3e-12  Score=131.68  Aligned_cols=103  Identities=21%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             cccCCCC-cccCCCCccccCCCcccEEEccc-CcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607          385 DVIMPNN-HLEGPIPMEFCQLNFLQILDISK-KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR  462 (629)
Q Consensus       385 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  462 (629)
                      .++.+++ .++. +|. +..+++|++|+|++ |.+.+..+..+..        +++|+.|+|++|.|++..|..|.++++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~--------l~~L~~L~l~~N~l~~~~~~~~~~l~~   81 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRG--------LGELRNLTIVKSGLRFVAPDAFHFTPR   81 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCS--------CCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcc--------ccCCCEEECCCCccceeCHHHhcCCcC
Confidence            3455555 5553 444 66666677777764 6666665555555        666777777777766666666666677


Q ss_pred             cceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607          463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT  498 (629)
Q Consensus       463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  498 (629)
                      |+.|+|++|+|+++++..|..++ |+.|++++|++.
T Consensus        82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            77777777777666666565554 677777777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=2.6e-10  Score=116.26  Aligned_cols=166  Identities=11%  Similarity=0.118  Sum_probs=116.3

Q ss_pred             hcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcc--cccCCCCCCc
Q 040607          209 LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQV--HIPVGNMKSL  286 (629)
Q Consensus       209 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~~L  286 (629)
                      +.....+..+.+.....  .+....+..+..++.+.+..+ +..+...+|..+..|+.+.+..+ ++.  ...|..+.+|
T Consensus       190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            33445556655544322  222233456677887777543 56666778888888888888765 332  2237788889


Q ss_pred             cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccc
Q 040607          287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSD  366 (629)
Q Consensus       287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  366 (629)
                      +.+.+..+ +. .++...|.++.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus       266 ~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          266 KTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            98888654 44 678888888999999999988888888889999999999999755 6666778899999999998865


Q ss_pred             cccCCCccccccCCCC
Q 040607          367 NHLSGKIPRWLGNLSV  382 (629)
Q Consensus       367 n~l~~~~~~~~~~l~~  382 (629)
                      + ++.+-..+|.++..
T Consensus       343 ~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          343 S-ITLIESGAFEGSSI  357 (379)
T ss_dssp             T-CCEECTTTTTTSSC
T ss_pred             c-cCEEchhHhhCCCC
Confidence            4 44344556666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.28  E-value=6.5e-10  Score=113.32  Aligned_cols=314  Identities=11%  Similarity=0.075  Sum_probs=185.8

Q ss_pred             hcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCC
Q 040607           62 IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKS  141 (629)
Q Consensus        62 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~  141 (629)
                      +....+|+.+.+.. .++ .|+..+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .++..+|... +
T Consensus        42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-D  114 (379)
T ss_dssp             GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-C
T ss_pred             cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-C
Confidence            33445677777754 344 676667777777777777644 666777777776 5666666543 44 5665566554 6


Q ss_pred             CCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEcc
Q 040607          142 IQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLS  221 (629)
Q Consensus       142 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~  221 (629)
                      |+.+.+.++- + .+....|..+ +++.+.+..+- ... ....+..+..++...+...............         
T Consensus       115 L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~v-~~i-~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~---------  180 (379)
T 4h09_A          115 LDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKSV-TTI-KDGIGYKAENLEKIEVSSNNKNYVAENYVLY---------  180 (379)
T ss_dssp             CSEEECCTTC-C-EECTTTTTTC-CCCEEEECTTC-CEE-CSCTTTTCTTCCEEEECTTCSSEEEETTEEE---------
T ss_pred             cccccCCCcc-c-cccccccccc-eeeeeecccee-ecc-ccchhcccccccccccccccceeecccceec---------
Confidence            7777776542 2 2333344443 34444443321 111 1122223333333333311111000000000         


Q ss_pred             CCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCc-ccccCCCCCCccEEeccCCCCCccc
Q 040607          222 HINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQ-VHIPVGNMKSLSVLDLSKNRLIGKI  300 (629)
Q Consensus       222 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~L~~L~L~~n~l~~~~  300 (629)
                       +.. ...... +.....+..+.+.. .........+..+..++.+.+..+-.. +...+..+..|+.+.+..+ ++ .+
T Consensus       181 -~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I  254 (379)
T 4h09_A          181 -NKN-KTILES-YPAAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-SI  254 (379)
T ss_dssp             -ETT-SSEEEE-CCTTCCCSEEECCT-TCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-EE
T ss_pred             -ccc-cceecc-cccccccccccccc-ceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-Ee
Confidence             000 001111 12334445554433 233445567777888888888655221 2233778888999998765 44 67


Q ss_pred             chhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCC
Q 040607          301 PERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNL  380 (629)
Q Consensus       301 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  380 (629)
                      ....|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ +..+-..+|.+|
T Consensus       255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            7778888889999998754 56666778889999999999888887777888999999999998754 554556688889


Q ss_pred             CCCccccCCCCcccCCCCccccCCC
Q 040607          381 SVSEDVIMPNNHLEGPIPMEFCQLN  405 (629)
Q Consensus       381 ~~L~~L~l~~n~l~~~~~~~~~~l~  405 (629)
                      .+|+.+.+..+ ++..-..+|.++.
T Consensus       333 ~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          333 KALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             CCCCEEEECCc-cCEEchhHhhCCC
Confidence            99999888764 4434445566554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=6.1e-13  Score=134.47  Aligned_cols=167  Identities=17%  Similarity=0.130  Sum_probs=82.9

Q ss_pred             ccceeeccCcccCccchhhhcCC-----CCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCccc-----C
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSM-----TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCL-----G  112 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~  112 (629)
                      .+++|+|++|.++......+...     ++|++|+|++|.+++.........+++|++|+|++|.+++.....+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            45566666666655433333222     4666666666665422111112234456666666666544333222     2


Q ss_pred             CCCCCCeeecccccCCc----ccCccccCCCCCCCEEEccCcccccccC---CcccCCCCCCcEEECCCCcceeecCCCC
Q 040607          113 NMTSLQVLNISSNQLTG----NISSPPLKHLKSIQELKLSNNYFQIPIS---LGPLYNHSNLKIFDSENNQIYAQTESHS  185 (629)
Q Consensus       113 ~l~~L~~L~L~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~  185 (629)
                      ..++|++|+|++|.+++    .++. .+..+++|++|+|++|.++....   ...+...++|+.|++++|.+.....   
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~---  228 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA---  228 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH---
T ss_pred             cCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH---
Confidence            34556666666666542    1111 23455566666666666542100   1233444556666666665532211   


Q ss_pred             cCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCC
Q 040607          186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFP  230 (629)
Q Consensus       186 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  230 (629)
                                       ..++..+...+.|++|++++|.+++...
T Consensus       229 -----------------~~l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          229 -----------------LALARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             -----------------HHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             -----------------HHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence                             0233445556677777777777664333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=4.2e-12  Score=128.30  Aligned_cols=109  Identities=17%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             CCccEEEccCCCCccccc------C-CCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCccc-----
Q 040607          262 RHLTYLDVSDNFFQVHIP------V-GNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKK-----  329 (629)
Q Consensus       262 ~~L~~L~L~~n~~~~~~~------~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----  329 (629)
                      +.|+.|++++|.++....      + ...++|++|++++|.+++.....+...+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            445555555555543221      1 1234666666666666543333333334556666666666654333332     


Q ss_pred             CCCCCCcEEEccCCcCccc----CchhhhccccCCceeccccccC
Q 040607          330 INLTNLWRLQLDGNHFIGE----IPESLSNCNLFGGLYLSDNHLS  370 (629)
Q Consensus       330 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  370 (629)
                      ...++|++|++++|.++..    ++..+..+++|++|++++|.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            2345566666666665432    2233344555666666665544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=1.1e-09  Score=109.61  Aligned_cols=144  Identities=14%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             chhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCcccc--CCCcccEEEccc--CcCCCCC-CCC
Q 040607          350 PESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFC--QLNFLQILDISK--KNIFGSL-PSC  424 (629)
Q Consensus       350 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~-~~~  424 (629)
                      ...+..+|+|+.|++++|.-. .++. +. +++|+.|++..|.+.......+.  .+|+|+.|+|+.  |...+.. ...
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            344555666666666655211 1121 22 45666666665554322111222  456677776642  1111100 000


Q ss_pred             cCCCccccCCCccCCCeeecccccCCCCCcccc---ccccccceEeccCcccccccc----ccccCCCCCCEEECcCCcC
Q 040607          425 FNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRI---GNLTRIHTLNVSHNKLTGLIL----STFSNLKQTESLDLSYNKL  497 (629)
Q Consensus       425 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l  497 (629)
                      +..  ......+++|+.|+|.+|.+.+..+..+   ..+++|++|+|+.|.+++...    ..+..+++|+.|++++|.+
T Consensus       242 l~~--~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          242 FRP--LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TGG--GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHH--HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            000  0011124566666666665542222222   134566666666666554321    2223345566666666655


Q ss_pred             C
Q 040607          498 T  498 (629)
Q Consensus       498 ~  498 (629)
                      +
T Consensus       320 ~  320 (362)
T 2ra8_A          320 S  320 (362)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=7e-09  Score=103.72  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=28.6

Q ss_pred             cCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCcccc--CCCCCCCEEEcc
Q 040607           87 LCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPL--KHLKSIQELKLS  148 (629)
Q Consensus        87 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l--~~l~~L~~L~L~  148 (629)
                      +..+++|+.|++++|.-..+++  +. +++|++|++..+.+...... .+  ..+|+|++|+|+
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEe
Confidence            3455666666666652112222  22 56666666666655421111 12  245666666664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=5.2e-08  Score=87.82  Aligned_cols=111  Identities=22%  Similarity=0.179  Sum_probs=68.0

Q ss_pred             cccceeeccCc-ccCcc----chhhhcCCCCCCEEEccCCcCCCcc---CccccCCCCCCcEEEccCCcCccCC----Cc
Q 040607           42 CFIGFRAMDGT-ALDKN----FLQVIKSMTSLKLLSLSNSRLNGTI---LDQGLCEFVHLQELHVDHNNLYGVP----PW  109 (629)
Q Consensus        42 ~~l~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~~L~~L~L~~n~i~~~~----~~  109 (629)
                      +.+++|+|++| .+...    +...+...++|++|+|++|.+.+.-   ....+...++|++|+|++|.|.+..    ..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            35666666666 66543    3444556677777777777765211   0113445567777777777775432    23


Q ss_pred             ccCCCCCCCeeec--ccccCCcc----cCccccCCCCCCCEEEccCcccc
Q 040607          110 CLGNMTSLQVLNI--SSNQLTGN----ISSPPLKHLKSIQELKLSNNYFQ  153 (629)
Q Consensus       110 ~~~~l~~L~~L~L--~~n~l~~~----i~~~~l~~l~~L~~L~L~~n~l~  153 (629)
                      ++...+.|++|++  ++|.+.+.    +.. .+...++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence            5566777888888  67777632    222 4555678888888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=1.6e-07  Score=88.88  Aligned_cols=80  Identities=24%  Similarity=0.312  Sum_probs=37.8

Q ss_pred             CCCCCcEEEccCCcCccCC--CcccCCCCCCCeeecccccCCcccCccccCCCC--CCCEEEccCcccccccCC------
Q 040607           89 EFVHLQELHVDHNNLYGVP--PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLK--SIQELKLSNNYFQIPISL------  158 (629)
Q Consensus        89 ~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~--~L~~L~L~~n~l~~~~~~------  158 (629)
                      ++++|++|+|++|+++++.  +..+..+++|+.|+|++|.++ .+.  .+..++  +|++|++++|.+.+..+.      
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cch--hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            3455555555555555433  123344555555555555555 221  222222  555555555555432221      


Q ss_pred             cccCCCCCCcEEE
Q 040607          159 GPLYNHSNLKIFD  171 (629)
Q Consensus       159 ~~~~~l~~L~~L~  171 (629)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1244555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=5.1e-07  Score=81.26  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             cCCCccEEEccCC-CCccccc------CCCCCCccEEeccCCCCCcccchhhh---hCCCCCcEEEccCcccccc----c
Q 040607          260 ARRHLTYLDVSDN-FFQVHIP------VGNMKSLSVLDLSKNRLIGKIPERLA---MGCFSLRYLVLSNNKMKGH----I  325 (629)
Q Consensus       260 ~~~~L~~L~L~~n-~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~----~  325 (629)
                      ..+.|++|+|++| .+.....      +...++|++|+|++|.+.+.....+.   ...+.|++|++++|.+...    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3455566666665 5543211      44556677777777776532221111   1245677777777766543    2


Q ss_pred             CcccCCCCCCcEEEc--cCCcCcccC----chhhhccccCCceecccccc
Q 040607          326 FSKKINLTNLWRLQL--DGNHFIGEI----PESLSNCNLFGGLYLSDNHL  369 (629)
Q Consensus       326 ~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l  369 (629)
                      ...+...++|++|++  ++|.+....    ...+...++|++|++++|.+
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            334445566777777  666665432    23444456666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=8.5e-07  Score=83.88  Aligned_cols=66  Identities=26%  Similarity=0.301  Sum_probs=29.9

Q ss_pred             cccccceEeccCccccccc--cccccCCCCCCEEECcCCcCCCCCCccccCCC--CCCEEEcccCcCcccCC
Q 040607          459 NLTRIHTLNVSHNKLTGLI--LSTFSNLKQTESLDLSYNKLTGKIPPQLVELN--ALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       459 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~  526 (629)
                      .+++|+.|+|++|+|+++.  +..+..+++|+.|+|++|+|++.  +.+..+.  +|+.|++++|++.+..|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3445555555555554422  23334455555555555555432  1222222  45555555555554333

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.08  E-value=6.2e-07  Score=78.49  Aligned_cols=82  Identities=13%  Similarity=0.127  Sum_probs=36.1

Q ss_pred             CCCEEEccCCcCCCccCccccCCCCCCcEEEccCCc-CccCCCcccCCC----CCCCeeeccccc-CCcccCccccCCCC
Q 040607           67 SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNN-LYGVPPWCLGNM----TSLQVLNISSNQ-LTGNISSPPLKHLK  140 (629)
Q Consensus        67 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~i~~~~l~~l~  140 (629)
                      +|++||+++|.+++.-. ..+.++++|++|+|++|. +++..-..+..+    ++|++|++++|. +++.- -..+.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence            35555555555442111 134455555555555552 332222223332    245555555553 44211 11344555


Q ss_pred             CCCEEEccCc
Q 040607          141 SIQELKLSNN  150 (629)
Q Consensus       141 ~L~~L~L~~n  150 (629)
                      +|++|+++++
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5666666555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=1.3e-06  Score=76.50  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=26.5

Q ss_pred             ccCCCeeeccccc-CCCCCccccccc----cccceEeccCc-cccccccccccCCCCCCEEECcCC
Q 040607          436 LNSMSGLDLSCNK-LTGEIPLRIGNL----TRIHTLNVSHN-KLTGLILSTFSNLKQTESLDLSYN  495 (629)
Q Consensus       436 ~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N  495 (629)
                      +++|+.|+|++|. +++..-..+..+    ++|++|+|++| +||+.....+..+++|++|+++++
T Consensus        84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A           84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            4555555555553 332211222221    24555555554 244443334444555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.92  E-value=1.1e-05  Score=67.51  Aligned_cols=60  Identities=27%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             ceEeccCcccc--ccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          464 HTLNVSHNKLT--GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       464 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      ..++.+++.++  .+ |..+.  ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.+.+.
T Consensus        11 ~~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            36788888887  44 43333  468888888888887777778888888888888888887665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.58  E-value=8.1e-05  Score=62.07  Aligned_cols=56  Identities=21%  Similarity=0.206  Sum_probs=31.5

Q ss_pred             eeecccccCC-CCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCC
Q 040607          441 GLDLSCNKLT-GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLT  498 (629)
Q Consensus       441 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  498 (629)
                      .++.+++.++ ..+|..+  .++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4566666654 2333322  134666666666666666666666666666666666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.08  E-value=0.00035  Score=62.29  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=56.7

Q ss_pred             ccceeeccCc-ccCcc----chhhhcCCCCCCEEEccCCcCCCccC---ccccCCCCCCcEEEccCCcCccCCC----cc
Q 040607           43 FIGFRAMDGT-ALDKN----FLQVIKSMTSLKLLSLSNSRLNGTIL---DQGLCEFVHLQELHVDHNNLYGVPP----WC  110 (629)
Q Consensus        43 ~l~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~i~---~~~~~~l~~L~~L~L~~n~i~~~~~----~~  110 (629)
                      .|++|+|+++ .|...    +.+++..-+.|+.|+|++|.+.+.-.   .+++..-+.|++|+|+.|.|.....    ++
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4556666653 55432    34455555666666666666641100   0123344566777777766643322    23


Q ss_pred             cCCCCCCCeeeccccc---CCc----ccCccccCCCCCCCEEEccCccc
Q 040607          111 LGNMTSLQVLNISSNQ---LTG----NISSPPLKHLKSIQELKLSNNYF  152 (629)
Q Consensus       111 ~~~l~~L~~L~L~~n~---l~~----~i~~~~l~~l~~L~~L~L~~n~l  152 (629)
                      +..-+.|++|+|++|.   +.+    .+.. .+..-+.|+.|+++.|.+
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            4555567777776542   221    1111 344556777777776643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.75  E-value=0.0012  Score=58.86  Aligned_cols=107  Identities=11%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             CCccEEEccCC-CCccccc------CCCCCCccEEeccCCCCCcccchhhh---hCCCCCcEEEccCcccccccC----c
Q 040607          262 RHLTYLDVSDN-FFQVHIP------VGNMKSLSVLDLSKNRLIGKIPERLA---MGCFSLRYLVLSNNKMKGHIF----S  327 (629)
Q Consensus       262 ~~L~~L~L~~n-~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~----~  327 (629)
                      +.|+.|+|++| .+.....      +...+.|+.|+|++|.+.+.....+.   ..-+.|++|+|++|.|.....    .
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            44555555553 4432211      44455666666666666533222111   123566666666666653222    2


Q ss_pred             ccCCCCCCcEEEccCC---cCccc----CchhhhccccCCceeccccc
Q 040607          328 KKINLTNLWRLQLDGN---HFIGE----IPESLSNCNLFGGLYLSDNH  368 (629)
Q Consensus       328 ~~~~l~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~  368 (629)
                      .+..-+.|+.|++++|   .+...    +.+.+..-+.|+.|+++.|.
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3344455777777654   22211    23344455566666665443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.69  E-value=0.95  Score=35.04  Aligned_cols=45  Identities=11%  Similarity=0.211  Sum_probs=20.9

Q ss_pred             CccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccC
Q 040607          103 LYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN  149 (629)
Q Consensus       103 i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~  149 (629)
                      ++.+...+|.+|.+|+.+.+..+ ++ .|...+|.+|.+|+.+.+.+
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence            34444444555555555554443 22 44444455555555554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	629
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 2e-17
 Identities = 76/465 (16%), Positives = 147/465 (31%), Gaps = 99/465 (21%)

Query: 55  DKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNM 114
           D    + +K         L  + +  T+      +   +  L  D   +  +    +  +
Sbjct: 18  DTALAEKMK-------TVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG--VEYL 65

Query: 115 TSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSEN 174
            +L  +N S+NQLT      PLK+L  + ++ ++NN       L  L N + L +F+++ 
Sbjct: 66  NNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 175 NQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLS 234
             I       +L      ++ I    +              +  +L  +           
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 235 ENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKN 294
            +N                         +L  L  ++N      P+G + +L  L L+ N
Sbjct: 183 SSNKV-------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 229

Query: 295 RLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLS 354
           +L                                  +LTNL  L L  N      P  LS
Sbjct: 230 QLKD---------------------------IGTLASLTNLTDLDLANNQISNLAP--LS 260

Query: 355 NCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISK 414
                  L L  N +S   P     L+   ++ +  N LE   P+   +           
Sbjct: 261 GLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPISNLK----------- 307

Query: 415 KNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLT 474
                                  +++ L L  N ++   P  + +LT++  L  ++NK++
Sbjct: 308 -----------------------NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 342

Query: 475 GLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHN 519
            +  S+ +NL     L   +N+++   P  L  L  +    +   
Sbjct: 343 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 62/343 (18%), Positives = 112/343 (32%), Gaps = 28/343 (8%)

Query: 8   LHNLTNLENLTLDN-------SFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQ 60
           +  L NL  +   N          +++ L  I +    +          + T L     Q
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 61  VIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVL 120
           +        L +L+   L+   +   +     L  L              L N+T+L+ L
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 121 NISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ 180
           +ISSN+         L  L +++ L  +NN       + PL   +NL       NQ+   
Sbjct: 181 DISSNK---VSDISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQL--- 231

Query: 181 TESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKL 240
            +  +L     L  + L++               L  + L    +    P       T  
Sbjct: 232 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGANQISNISPLAGLTALTN- 289

Query: 241 QTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKI 300
                  N        P    ++LTYL +  N      PV ++  L  L  + N++    
Sbjct: 290 ----LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-- 343

Query: 301 PERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN 343
              LA    ++ +L   +N++         NLT + +L L+  
Sbjct: 344 VSSLA-NLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 8e-15
 Identities = 59/261 (22%), Positives = 97/261 (37%), Gaps = 21/261 (8%)

Query: 263 HLTYLDVSDNFFQVHIP----VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN 318
            +  LD+S        P    + N+  L+ L +     +             L YL +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 319 NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLG 378
             + G I      +  L  L    N   G +P S+S+     G+    N +SG IP   G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 379 NL-SVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCF------------ 425
           +   +   + +  N L G IP  F  LN   +          +                 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 426 --NPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSN 483
               F + +     +++GLDL  N++ G +P  +  L  +H+LNVS N L G I     N
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGN 289

Query: 484 LKQTESLDLSYNK-LTGKIPP 503
           L++ +    + NK L G   P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 7e-13
 Identities = 55/271 (20%), Positives = 85/271 (31%), Gaps = 12/271 (4%)

Query: 281 GNMKSLSVLDLSKNRLIGKIPERLAMGCFS-LRYLVLSNN-KMKGHIFSKKINLTNLWRL 338
                ++ LDLS   L    P   ++     L +L +     + G I      LT L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 339 QLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP 398
            +   +  G IP+ LS       L  S N LSG +P  + +L     +    N + G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 399 MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG 458
             +   + L       +N                                +       + 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF---------VDLSRNMLEGDASVLF 217

Query: 459 NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH 518
              +               L      K    LDL  N++ G +P  L +L  L   +V+ 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 519 NKLSGKTPDWVAQFATFNGSSYDGNPFLSSS 549
           N L G+ P        F+ S+Y  N  L  S
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 4e-11
 Identities = 49/268 (18%), Positives = 75/268 (27%), Gaps = 7/268 (2%)

Query: 91  VHLQELHVDHNNLYGVP--PWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS 148
             +  L +   NL      P  L N+  L  L I           P +  L  +  L ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 149 NNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKF 208
           +      I        + + +  S N        S S  P     +   +  SG   P  
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-AIPDS 168

Query: 209 LYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLD 268
                 L        N           N       +  N        +    +       
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 269 VSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSK 328
             ++       VG  K+L+ LDL  NR+ G +P+ L      L  L +S N + G I   
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG 287

Query: 329 KINLTNLWRLQLDGNHFIGEIPESLSNC 356
             NL          N  +   P  L  C
Sbjct: 288 G-NLQRFDVSAYANNKCLCGSP--LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 38  WMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELH 97
                    +           L  +    +L  L L N+R+ GT+    L +   L  L+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLN 274

Query: 98  VDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPP 135
           V  NNL G  P   GN+    V   ++N+       P 
Sbjct: 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 49/293 (16%), Positives = 102/293 (34%), Gaps = 26/293 (8%)

Query: 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF 273
            L+ V  S + L  + P  L  +      L   NN ++ I        ++L  L + +N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 274 FQVHIP--VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKIN 331
                P     +  L  L LSKN+L  ++PE++      LR       K++  +F+    
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 332 LTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN 391
           +  +  L  +     G    +         + ++D +++        +L    ++ +  N
Sbjct: 126 MIVVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGN 181

Query: 392 HLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG 451
            +          LN L  L +S  +I                     +  L L+ NKL  
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH--------LRELHLNNNKLV- 232

Query: 452 EIPLRIGNLTRIHTLNVSHNKLTGLILSTF------SNLKQTESLDLSYNKLT 498
           ++P  + +   I  + + +N ++ +  + F      +       + L  N + 
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 14/263 (5%)

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
               LL L N+++   I D       +L  L + +N +  + P     +  L+ L +S N
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
           QL       P K  K++QEL++  N             +  + +    N    +  E+ +
Sbjct: 90  QLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQ 245
                +L+ I ++  +  T P+ L     L  ++L    +       L +    L  L  
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASL-KGLNNLAKLGL 202

Query: 246 VNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIG-----K 299
             N +S +         HL  L +++N        + + K + V+ L  N +        
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 300 IPERLAMGCFSLRYLVLSNNKMK 322
            P        S   + L +N ++
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 3e-11
 Identities = 57/265 (21%), Positives = 101/265 (38%), Gaps = 18/265 (6%)

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
            +P       ++LDL  N+ I +I +       +L  L+L NNK+          L  L 
Sbjct: 24  KVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLE-- 394
           RL L  N  + E+PE +        L + +N ++         L+    V +  N L+  
Sbjct: 83  RLYLSKNQ-LKELPEKMPKTLQE--LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 395 GPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP 454
           G     F  +  L  + I+  NI  ++P               S++ L L  NK+T    
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNI-TTIPQGL----------PPSLTELHLDGNKITKVDA 188

Query: 455 LRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVF 514
             +  L  +  L +S N ++ +   + +N      L L+ NKL  K+P  L +   + V 
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247

Query: 515 SVAHNKLSGKTPDWVAQFATFNGSS 539
            + +N +S    +           +
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKA 272

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 7/245 (2%)

Query: 206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLT 265
                +  +L  + L +  +    P   +    KL+ L    N L  + +      + L 
Sbjct: 48  DGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELR 106

Query: 266 YLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI 325
             +      +  +  G  + + V   +       I      G   L Y+ +++  +    
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 166

Query: 326 FSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSED 385
                   +L  L LDGN        SL   N    L LS N +S      L N     +
Sbjct: 167 QG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 386 VIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLS 445
           + + NN L   +P       ++Q++ +   NI     + F P          S SG+ L 
Sbjct: 224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK--KASYSGVSLF 280

Query: 446 CNKLT 450
            N + 
Sbjct: 281 SNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 44/249 (17%), Positives = 73/249 (29%), Gaps = 20/249 (8%)

Query: 7   ELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMT 66
           +  NL NL  L L N+        +           F     ++   L KN L+ +    
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGA-----------FAPLVKLERLYLSKNQLKELPEKM 98

Query: 67  SLKLLSLSNSRLNGTILDQGL---CEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNIS 123
              L  L       T + + +      + + EL  +     G+       M  L  + I+
Sbjct: 99  PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 158

Query: 124 SNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTES 183
              +T    + P     S+ EL L  N      +   L   +NL       N I A    
Sbjct: 159 DTNIT----TIPQGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNG 213

Query: 184 HSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTL 243
                   L  + L++   V  P  L     ++ V L + N+     N         +  
Sbjct: 214 SLANTPH-LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272

Query: 244 VQVNNYLSG 252
                 L  
Sbjct: 273 SYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 438 SMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
            +  +  S   L  ++P  +        L++ +NK+T +    F NLK   +L L  NK+
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 498 TGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSS 539
           +   P     L  L    ++ N+L                  
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 5e-12
 Identities = 48/291 (16%), Positives = 86/291 (29%), Gaps = 18/291 (6%)

Query: 211 HQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVS 270
           +       +     L+   P  +       Q +    N +S +      A R+LT L + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 271 DNFFQVHIPVGNMKSLSVLD--LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSK 328
            N               +    LS N  +  +      G   L  L L    ++      
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 329 KINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIM 388
              L  L  L L  N       ++  +      L+L  N +S    R    L   + +++
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448
             N +    P  F  L  L  L +          +  +    +   PL ++  L L+ N 
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLF--------ANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 449 LTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG 499
              +   R      +     S +++     S    L   +   L+ N L G
Sbjct: 237 WVCDCRAR-PLWAWLQKFRGSSSEVPC---SLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 40/215 (18%), Positives = 68/215 (31%), Gaps = 9/215 (4%)

Query: 333 TNLWRLQLDGNHFIGEIPESLSNC-NLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNN 391
               R+ L GN        S   C NL      S+         + G   + +  +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 392 HLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTG 451
            L    P  F  L  L  L + +  +    P  F            ++  L L  N L  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------AALQYLYLQDNALQA 143

Query: 452 EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNAL 511
                  +L  +  L +  N+++ +    F  L   + L L  N++    P    +L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 512 AVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFL 546
               +  N LS    + +A          + NP++
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 41/285 (14%), Positives = 89/285 (31%), Gaps = 10/285 (3%)

Query: 88  CEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL 147
           C              L  VP    G   + Q + +  N+++  + +   +  +++  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQAVPV---GIPAASQRIFLHGNRISH-VPAASFRACRNLTILWL 63

Query: 148 SNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPK 207
            +N      +          ++  S+N Q+    +  +     +L+++ L          
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 208 FLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYL 267
            L+             N     P+    +   L  L    N +S + +        L  L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 268 DVSDNFFQVHIPVGNMKSLSVLDLSKNR-LIGKIPERLAMGCFSLRYLVLSNNKMKGHIF 326
            +  N      P        ++ L      +  +P        +L+YL L++N       
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC- 241

Query: 327 SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSG 371
             +     L + +   +     +P+ L+  +L     L+ N L G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 40/215 (18%), Positives = 70/215 (32%), Gaps = 9/215 (4%)

Query: 310 SLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHL 369
           + + + L  N++     +      NL  L L  N        + +   L   L LSDN  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 370 SGKI-PRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPF 428
              + P     L     + +    L+   P  F  L  LQ L +    +       F   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 429 SIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTE 488
                    +++ L L  N+++         L  +  L +  N++  +    F +L +  
Sbjct: 153 --------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 489 SLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSG 523
           +L L  N L+      L  L AL    +  N    
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 6/229 (2%)

Query: 6   IELHNLTNLENLTLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSM 65
           +   +     NLT+     +V     I       +         D   L          +
Sbjct: 47  VPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

Query: 66  TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN 125
             L  L L        +          LQ L++  N L  +P     ++ +L  L +  N
Sbjct: 105 GRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHS 185
           +++  +     + L S+  L L  N                + ++   NN     TE+ +
Sbjct: 164 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 186 LTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLS 234
             P   L  + L+    V   +       L+    S   +    P  L+
Sbjct: 223 --PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 5e-09
 Identities = 54/459 (11%), Positives = 111/459 (24%), Gaps = 29/459 (6%)

Query: 67  SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNL----YGVPPWCLGNMTSLQVLNI 122
            ++ L +    L+     + L      Q + +D   L           L    +L  LN+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 123 SSNQLTGNISSPPLKHLKS----IQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY 178
            SN+L        L+ L++    IQ+L L N                 L      +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 179 AQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNT 238
              ++       QL    L           L +            ++    P++     +
Sbjct: 123 LLGDAG-----LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 239 KLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIG 298
                      L    +        L                G + S + L         
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 299 KIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNL 358
                +A  C  L +       +                  L     + E+  + +    
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIF 418
            G   L +  L                 +   +            L   + L   + +  
Sbjct: 298 EGARLLCETLLEPGCQLE-------SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 350

Query: 419 GSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE----IPLRIGNLTRIHTLNVSHNKLT 474
               +         G+P + +  L L+   ++      +   +     +  L++S+N L 
Sbjct: 351 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

Query: 475 GLILSTFS-----NLKQTESLDLSYNKLTGKIPPQLVEL 508
              +              E L L     + ++  +L  L
Sbjct: 411 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 43/446 (9%), Positives = 101/446 (22%), Gaps = 30/446 (6%)

Query: 116 SLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF--QIPISLGP-LYNHSNLKIFDS 172
            +Q L+I   +L+    +  L  L+  Q ++L +          +   L  +  L   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 173 ENNQIYAQTESH--SLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFP 230
            +N++                     LS  +                   +   L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 231 NWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLD 290
                    L   +          Q+   +    +   ++              S + ++
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 291 LSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN------- 343
            +  R++ +  +       +L+                 +      R    G+       
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 344 -----HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP 398
                  +      L    ++     +                    +       EG   
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 399 MEFCQLNFLQILDISKKN----IFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIP 454
           +    L     L+                  +  +  +      +S   L    +     
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 455 LRIGNLTRIHTLNVSHNKLTGL----ILSTFSNLKQTESLDLSYNKLTGKIPPQLVE--- 507
                 + +  L ++   ++      + +T         LDLS N L      QLVE   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 508 --LNALAVFSVAHNKLSGKTPDWVAQ 531
                L    +     S +  D +  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 38/248 (15%), Positives = 71/248 (28%), Gaps = 6/248 (2%)

Query: 261 RRHLTYLDVSDNFFQVHIP-VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNN 319
            + +       +F    +    +   +  +DLS + +       +   C  L+ L L   
Sbjct: 22  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 320 KMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN 379
           ++   I +     +NL RL L G     E        +      L+ +       + +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG-KPLNS 438
                   +   +L G             +             S        Q    LN 
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 439 MSGLDLS-CNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
           +  L LS C  +  E  L +G +  + TL V      G +      L     L ++ +  
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHF 258

Query: 498 TGKIPPQL 505
           T    P +
Sbjct: 259 TTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 442 LDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI 501
           LDL+   L  ++  R+ +   I       + +   +   FS  +  + +DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 502 PPQLVE-LNALAVFSVAHNKLSGKTPDWVAQF 532
              ++   + L   S+   +LS    + +A+ 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 94

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 15/262 (5%)

Query: 106 VPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHS 165
           + P   G + S  V+     +   +           +Q + LSN+  ++    G L   S
Sbjct: 12  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 71

Query: 166 NLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINL 225
            L+    E  ++      ++L     L  + LS  SG +             ++  +++ 
Sbjct: 72  KLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130

Query: 226 RGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFF----------- 274
             +F     +      +       LSG  +  + +          +              
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 190

Query: 275 QVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTN 334
                   +  L  L LS+   I            +L+ L +      G +   ++    
Sbjct: 191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL---QLLKEA 247

Query: 335 LWRLQLDGNHFIGEIPESLSNC 356
           L  LQ++ +HF      ++ N 
Sbjct: 248 LPHLQINCSHFTTIARPTIGNK 269

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 22/219 (10%)

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172
            + +   +    + +T  ++      L  I  L           ++  +   +NL   + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLEL 70

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
           ++NQI       +LT   +L        +          +                  + 
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARR-------------HLTYLDVSDNFFQVHIP 279
           L      L  +  ++                             LT L   DN      P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSN 318
           + ++ +L  + L  N++    P        +L  + L+N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 19/215 (8%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
             +  ++    +N+         ++  +  L+     +T   +   +++L ++  L+L +
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL 209
           N       L  L   + L++  +    + A     S+      ++ I             
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 210 YHQHDLKHVNLSHINLRGEFPNWLS------------ENNTKLQTLVQVNNYLSGIFQMP 257
               DL  +             +LS             N +KL TL   +N +S I  + 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 258 KHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292
                +L  + + +N      P+ N  +L ++ L+
Sbjct: 193 SL--PNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 15/222 (6%)

Query: 278 IPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR 337
            P   + +   +   K+ +   + +        +  L      +          L NL  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67

Query: 338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPI 397
           L+L  N      P           L  +       I       ++        +      
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 398 PMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLN------SMSGLDLSCNKLTG 451
                 L        +   + G     +      Q   L        ++ L    NK++ 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 452 EIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLS 493
             PL   +L  +  +++ +N+++ +     +N      + L+
Sbjct: 188 ISPL--ASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 31/206 (15%), Positives = 57/206 (27%), Gaps = 10/206 (4%)

Query: 93  LQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF 152
             E++ D  NL  +PP          +L++S N L    S   L     + +L L     
Sbjct: 12  HLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAEL 67

Query: 153 QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQ 212
                 G L     L +  ++   +    ++        ++   L+             Q
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDN 272
                 N       G            L      NN L+ +     +   +L  L + +N
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLA-----NNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 273 -FFQVHIPVGNMKSLSVLDLSKNRLI 297
             + +         L    L  N  +
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 13/197 (6%)

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
            +P    K  ++L LS+N L       L      L  L L   ++          L  L 
Sbjct: 24  ALPPDLPKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAEL--TKLQVDGTLPVLG 80

Query: 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP 396
            L L  N                  L +S N L+      L  L   +++ +  N L+  
Sbjct: 81  TLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 397 IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLR 456
            P        L+ L ++  N+        N         L ++  L L  N L   IP  
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLN--------GLENLDTLLLQENSLY-TIPKG 190

Query: 457 IGNLTRIHTLNVSHNKL 473
                 +    +  N  
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 41/218 (18%), Positives = 58/218 (26%), Gaps = 19/218 (8%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
           +  + S   ++     L  T L   L        LH+  N LY      L   T L  LN
Sbjct: 6   VSKVASHLEVNCDKRNL--TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQT 181
           +   +LT       L  L ++              SL  L            +       
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLD------LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 182 ESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQ 241
              +L    +L  + L      T P  L              N   E P  L      L 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 242 TLVQVNNYL----SGIFQMPKHARRHLTYLDVSDNFFQ 275
           TL+   N L     G F         L +  +  N + 
Sbjct: 176 TLLLQENSLYTIPKGFFGSHL-----LPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 12/189 (6%)

Query: 333 TNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNH 392
            +   L L  N        +L        L L    L+         +  + D+      
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 393 LEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE 452
               +      L  L +      ++                K            N+L   
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-----------GNELKTL 139

Query: 453 IPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALA 512
            P  +    ++  L++++N LT L     + L+  ++L L  N L   IP      + L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 513 VFSVAHNKL 521
              +  N  
Sbjct: 199 FAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 44/200 (22%), Positives = 65/200 (32%), Gaps = 7/200 (3%)

Query: 214 DLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNF 273
               VN    NL    P  L ++      L    N L             LT L++    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 274 FQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLT 333
                  G +  L  LDLS N+L             +L  L +S N++          L 
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL 393
            L  L L GN      P  L+       L L++N+L+      L  L   + +++  N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 394 EGPIPMEFCQLNFLQILDIS 413
              IP  F   + L    + 
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLH 203

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 32/219 (14%), Positives = 54/219 (24%), Gaps = 18/219 (8%)

Query: 280 VGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQ 339
           V  + S   ++  K  L   +P  L         L LS N +     +  +  T L +L 
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 340 LDG-NHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIP 398
           LD       ++  +L         +     L            +        +   G + 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 399 MEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIG 458
                       +  K    G L        +              + N LT      + 
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL------------ANNNLTELPAGLLN 169

Query: 459 NLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKL 497
            L  + TL +  N L  +    F          L  N  
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 15/214 (7%)

Query: 238 TKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLSKNR 295
           +K+ + ++VN     +  +P    +  T L +S+N         +     L+ L+L +  
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 296 LIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSN 355
           L          G   +   +  ++     +      L  L  L +  N        +L  
Sbjct: 67  LTKLQV----DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 356 CNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK 415
                 LYL  N L    P  L      E + + NN+L          L  L  L + + 
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKL 449
           +++      F           + +    L  N  
Sbjct: 183 SLYTIPKGFFG---------SHLLPFAFLHGNPW 207

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 7/172 (4%)

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
            IP       + L L+ N L     + L      L  L L  N++ G   +     +++ 
Sbjct: 22  EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81

Query: 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP 396
            LQL  N       +     +    L L DN +S  +P    +L+    + + +N     
Sbjct: 82  ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141

Query: 397 IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNK 448
             + +      +      K++ G    C  P  ++    +  +   +  C+ 
Sbjct: 142 CHLAWFAEWLRK------KSLNGGAARCGAPSKVR-DVQIKDLPHSEFKCSS 186

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 7/182 (3%)

Query: 116 SLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENN 175
               ++ +   L       P        EL L++N      S G      +L   + + N
Sbjct: 9   EGTTVDCTGRGLK----EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64

Query: 176 QIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSE 235
           Q+     +            +  +       K     H LK +NL    +    P     
Sbjct: 65  QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE- 123

Query: 236 NNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNR 295
           +   L +L   +N  +    +       L    ++    +   P   ++ + + DL  + 
Sbjct: 124 HLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP-SKVRDVQIKDLPHSE 181

Query: 296 LI 297
             
Sbjct: 182 FK 183

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 7e-06
 Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 18/206 (8%)

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172
                   N+    +T  ++      L SI ++  +N+  +   S+  +    N+     
Sbjct: 22  AFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFL 75

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
             N++       +L                         +   K  +LS  +      N 
Sbjct: 76  NGNKLTDIKPLANLKNLG------WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292
           L          +  N                L  L + DN     +P+  +  L  L LS
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLT---KLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 293 KNRLIGKIPERLAMGCFSLRYLVLSN 318
           KN  I  +      G  +L  L L +
Sbjct: 187 KNH-ISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 28/203 (13%), Positives = 70/203 (34%), Gaps = 17/203 (8%)

Query: 90  FVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
           F    + ++   ++          + S+  +  +++ +    S   +++L ++ +L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77

Query: 150 NYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL 209
           N       L  L N   L + +++   + +  +   L              +G++    L
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-------EHNGISDINGL 130

Query: 210 YHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDV 269
            H   L+ + L +  +              L       + +  +  + K     L  L +
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK-----LQNLYL 185

Query: 270 SDNFFQVHIPVGNMKSLSVLDLS 292
           S N       +  +K+L VL+L 
Sbjct: 186 SKNHISDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 14/154 (9%)

Query: 5   LIELHNLTNLENLTLDN---------SFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALD 55
           +  +  L N+  L L+          +         +       +      + +   +L+
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 56  KNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMT 115
            N +  I  +  L  L       N       L     L  L ++ N +  + P  L  +T
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178

Query: 116 SLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
            LQ L +S N ++       L  LK++  L+L +
Sbjct: 179 KLQNLYLSKNHIS---DLRALAGLKNLDVLELFS 209

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 47/330 (14%), Positives = 94/330 (28%), Gaps = 21/330 (6%)

Query: 88  CEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLT---GNISSPPLKHLKSIQE 144
           C      EL +++  L  +P         L+ L  S N LT       S     + +   
Sbjct: 35  CLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 145 LKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVT 204
             LS+    +            L    + +       +++SL     L   +    +G  
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 205 FPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHL 264
             + L    +L  +   + +            + +               Q         
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 265 TYLDVSDNFF-----QVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNN 319
              ++             + V +     + +L ++     + E +  G   L   +   N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 320 KMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN 379
                I S      +L  L +  N  + E+P           L  S NHL+ ++P    N
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLER---LIASFNHLA-EVPELPQN 325

Query: 380 LSVSEDVIMPNNHLEGPIPMEFCQLNFLQI 409
           L   + + +  N L    P     +  L++
Sbjct: 326 L---KQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 38  WMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELH 97
           +     +        A       +     SL+ L++SN++L    L         L+ L 
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPALPP---RLERLI 310

Query: 98  VDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSN 149
              N+L  VP        +L+ L++  N L      P     +S+++L++++
Sbjct: 311 ASFNHLAEVPEL----PQNLKQLHVEYNPLREFPDIP-----ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 53/379 (13%), Positives = 101/379 (26%), Gaps = 66/379 (17%)

Query: 110 CLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYF-QIPISLGPLYNHSNLK 168
           CL        L +++  L+   S P L     ++ L  S N   ++P          +LK
Sbjct: 35  CLDR--QAHELELNNLGLS---SLPEL--PPHLESLVASCNSLTELPELPQ------SLK 81

Query: 169 IFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGE 228
               +NN +       +L+    L   +    + +     L +   LK +++ + +L+  
Sbjct: 82  SLLVDNNNL------KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 135

Query: 229 FPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSV 288
                S                                L    +       +        
Sbjct: 136 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG----- 190

Query: 289 LDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE 348
                          L           L+      ++     +L          ++++ +
Sbjct: 191 ------------NNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD 238

Query: 349 IPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQ 408
           +PE   +           + LS   P                N     I         L+
Sbjct: 239 LPELPQSLTFLDVSENIFSGLSELPPNLY-----------YLNASSNEIRSLCDLPPSLE 287

Query: 409 ILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV 468
            L++S  N    LP+               +  L  S N L  E+P    NL     L+V
Sbjct: 288 ELNVSN-NKLIELPAL-----------PPRLERLIASFNHLA-EVPELPQNLK---QLHV 331

Query: 469 SHNKLTGL--ILSTFSNLK 485
            +N L     I  +  +L+
Sbjct: 332 EYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 88  CEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL 147
                L       N              SL+ LN+S+N+L    + PP      ++ L  
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP-----RLERLIA 311

Query: 148 SNNYF-QIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNS 194
           S N+  ++P          NLK    E N +    +        ++NS
Sbjct: 312 SFNHLAEVPELPQ------NLKQLHVEYNPLREFPDIPESVEDLRMNS 353

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 9e-05
 Identities = 35/273 (12%), Positives = 75/273 (27%), Gaps = 8/273 (2%)

Query: 111 LGNMTSLQVLNISSNQLTGNIS---SPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNL 167
           L    S++ + +S N +    +   S  +   K ++  + S+ +        P      L
Sbjct: 27  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 86

Query: 168 KIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFL-YHQHDLKHVNLSHINLR 226
           +           +   ++  P  Q   I            +L  +    +        L+
Sbjct: 87  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 146

Query: 227 GEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSL 286
               N  ++N   L++++   N L                L  +    Q  I    ++ L
Sbjct: 147 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 206

Query: 287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI 346
            +  L+  +   ++                +         + +    N   L   G   +
Sbjct: 207 LLEGLAYCQ---ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 263

Query: 347 GEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGN 379
            +    L N  L   L L  N +     R L  
Sbjct: 264 VDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKT 295

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 30/310 (9%), Positives = 80/310 (25%), Gaps = 14/310 (4%)

Query: 56  KNFLQVIKSMTSLKLLSLSNSRLNG---TILDQGLCEFVHLQELHVDHNNLYGVPPWCLG 112
           K+   V+    S+K + LS + +       L + +     L+           V      
Sbjct: 21  KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 80

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172
            +  L    +   +L     S       + + L    +          L+N+       +
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH-LYLHNNGLGPQAGA 139

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
           +  +   +   +           I+   + +            +   L H     +    
Sbjct: 140 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 199

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292
                  L   +     L  +           +           ++    +    +    
Sbjct: 200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259

Query: 293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSK-----KINLTNLWRLQLDGNHF-- 345
              ++    +   +    L+ L L  N+++              + +L  L+L+GN F  
Sbjct: 260 AAAVVDAFSK---LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316

Query: 346 IGEIPESLSN 355
             ++ + +  
Sbjct: 317 EDDVVDEIRE 326

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 22/104 (21%)

Query: 94  QELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISS-------------------- 133
           + LH+ H +L  +    L  +  +  L++S N+L     +                    
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 134 PPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI 177
             + +L  +QEL L NN  Q   ++ PL +   L + + + N +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 62  IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLN 121
           ++ +  +  L LS++RL        L     L+ L    N L  V      N+  LQ L 
Sbjct: 16  LEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALENVDGVA--NLPRLQELL 71

Query: 122 ISSNQLTGNISSPPLKHLKSIQELKLSNN 150
           + +N+L  + +  PL     +  L L  N
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL 421
           L+L+   L+  +   L  L +   + + +N L    P     L  L++L  S   +    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTG-EIPLRIGNLTRIHTLNVSHNKLT---GLI 477
                P           +  L L  N+L        + +  R+  LN+  N L    G+ 
Sbjct: 60  GVANLPR----------LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

Query: 478 LSTFSNLKQTESL 490
                 L    S+
Sbjct: 110 ERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 266 YLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHI 325
            L ++     V   +  +  ++ LDLS NRL    P   A+ C  +       +      
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNALEN 57

Query: 326 FSKKINLTNLWRLQLDGNHFIG-EIPESLSNCNLFGGLYLSDNHLSGK 372
                NL  L  L L  N        + L +C     L L  N L  +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 15/184 (8%)

Query: 113 NMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDS 172
            +       +    +T  +S      L  +  L+      +   S+  +   +NL   + 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINF 69

Query: 173 ENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNW 232
            NNQ+   T   +LT    +                          N        +    
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 233 LSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLS 292
           L+       T+  ++           +   +               P+ N+ +L  LD+S
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSN---------QVTDLKPLANLTTLERLDIS 180

Query: 293 KNRL 296
            N++
Sbjct: 181 SNKV 184

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 32/228 (14%), Positives = 67/228 (29%), Gaps = 10/228 (4%)

Query: 277 HIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW 336
            IP    ++   L     + +  I +    G   L  + +S N +   I +   +     
Sbjct: 22  EIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP 396
                            +  NL    YL  ++             V +   +    L+  
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISN-----TGIKHLPDVHKIHSLQKVLLDIQ 135

Query: 397 IPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLR 456
             +    +     + +S +++   L                 +  L+LS N    E+P  
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195

Query: 457 I-GNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPP 503
           +    +    L++S  ++  L      NLK+  +      K   K+P 
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 88  CEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKL 147
                 +    D+NNL  +P       +   +L+IS  ++  ++ S  L++LK ++    
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST 232

Query: 148 SNN 150
            N 
Sbjct: 233 YNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 5/48 (10%), Positives = 17/48 (35%)

Query: 79  NGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ 126
              + +           L +    ++ +P + L N+  L+  +  + +
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	629
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.63

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.6e-27  Score=243.10  Aligned_cols=357  Identities=22%  Similarity=0.281  Sum_probs=197.2

Q ss_pred             eccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccC
Q 040607           48 AMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQL  127 (629)
Q Consensus        48 ~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l  127 (629)
                      .+..+.+++.+.  ...+.+|++|+++++.++ ++.  ++..+++|++|++++|+++++++  +.++++|++|++++|++
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~--gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCC-Ccc--ccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccc
Confidence            455666666543  345678888999888887 663  57788888899998888887764  88888888888888888


Q ss_pred             CcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcCh
Q 040607          128 TGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFPK  207 (629)
Q Consensus       128 ~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  207 (629)
                      + .++  .++++++|+.|+++++.+++. .  .......+.......+.+......                        
T Consensus       101 ~-~i~--~l~~l~~L~~L~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~------------------------  150 (384)
T d2omza2         101 A-DIT--PLANLTNLTGLTLFNNQITDI-D--PLKNLTNLNRLELSSNTISDISAL------------------------  150 (384)
T ss_dssp             C-CCG--GGTTCTTCCEEECCSSCCCCC-G--GGTTCTTCSEEEEEEEEECCCGGG------------------------
T ss_pred             c-ccc--ccccccccccccccccccccc-c--cccccccccccccccccccccccc------------------------
Confidence            7 554  478888888888888876632 1  233334444444444433211110                        


Q ss_pred             hhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCCcc
Q 040607          208 FLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKSLS  287 (629)
Q Consensus       208 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~  287 (629)
                        ......+........   ....                         .+.............|..........+++++
T Consensus       151 --~~~~~~~~~~~~~~~---~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (384)
T d2omza2         151 --SGLTSLQQLSFGNQV---TDLK-------------------------PLANLTTLERLDISSNKVSDISVLAKLTNLE  200 (384)
T ss_dssp             --TTCTTCSEEEEEESC---CCCG-------------------------GGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             --ccccccccccccccc---chhh-------------------------hhccccccccccccccccccccccccccccc
Confidence              000000000000000   0000                         0111112222222333322222234445555


Q ss_pred             EEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecccc
Q 040607          288 VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDN  367 (629)
Q Consensus       288 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  367 (629)
                      .+++++|.+.+ ++..  ..+++|++|++++|.++..  ..+..+++|+.+++++|.+++..  .+..+++|++|+++++
T Consensus       201 ~l~l~~n~i~~-~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~  273 (384)
T d2omza2         201 SLIATNNQISD-ITPL--GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGAN  273 (384)
T ss_dssp             EEECCSSCCCC-CGGG--GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSS
T ss_pred             eeeccCCccCC-CCcc--cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCc
Confidence            55555555542 2211  1144555555555554432  23444455555555555544322  2444444455544444


Q ss_pred             ccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccc
Q 040607          368 HLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCN  447 (629)
Q Consensus       368 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n  447 (629)
                      ++.+..                          .+..++.++.+++.+|.+.+..  .+..        +++++.|++++|
T Consensus       274 ~l~~~~--------------------------~~~~~~~l~~l~~~~n~l~~~~--~~~~--------~~~l~~L~ls~n  317 (384)
T d2omza2         274 QISNIS--------------------------PLAGLTALTNLELNENQLEDIS--PISN--------LKNLTYLTLYFN  317 (384)
T ss_dssp             CCCCCG--------------------------GGTTCTTCSEEECCSSCCSCCG--GGGG--------CTTCSEEECCSS
T ss_pred             ccCCCC--------------------------cccccccccccccccccccccc--ccch--------hcccCeEECCCC
Confidence            443211                          1344455556666555554321  1222        566777777777


Q ss_pred             cCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCc
Q 040607          448 KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK  520 (629)
Q Consensus       448 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  520 (629)
                      ++++..  .+..+++|++|++++|+++++.  .|.++++|++|++++|++++..|  +.++++|+.|++++|.
T Consensus       318 ~l~~l~--~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         318 NISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCSCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCc--ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            776432  3667788888888888877642  47778888888888888875544  6778888888888773

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=6.3e-29  Score=245.63  Aligned_cols=252  Identities=28%  Similarity=0.415  Sum_probs=213.2

Q ss_pred             CccEEeccCCCCCc--ccchhhhhCCCCCcEEEccC-cccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCc
Q 040607          285 SLSVLDLSKNRLIG--KIPERLAMGCFSLRYLVLSN-NKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGG  361 (629)
Q Consensus       285 ~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  361 (629)
                      +++.|+++++.+.+  .+|..+.. +++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            56677777777665  46666664 88888888876 6777778888888888888888888888888888888888888


Q ss_pred             eeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcc-cEEEcccCcCCCCCCCCcCCCccccCCCccCCC
Q 040607          362 LYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFL-QILDISKKNIFGSLPSCFNPFSIKQGKPLNSMS  440 (629)
Q Consensus       362 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~  440 (629)
                      +++++|.+...+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++.+..|..+..        + ...
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~--------l-~~~  200 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------L-NLA  200 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------C-CCS
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc--------c-ccc
Confidence            8888888887888888888888888888888888888888887775 88899999988888877654        3 445


Q ss_pred             eeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCc
Q 040607          441 GLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNK  520 (629)
Q Consensus       441 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  520 (629)
                      .++++.+...+.+|..+..+++++.+++++|.+++.++ .+..+++|+.|++++|++++.+|+.|..+++|++|++++|+
T Consensus       201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            78999998888889999999999999999999987655 58889999999999999999999999999999999999999


Q ss_pred             CcccCCCccccccccCCCCCCCCCCCCC
Q 040607          521 LSGKTPDWVAQFATFNGSSYDGNPFLSS  548 (629)
Q Consensus       521 l~~~~~~~~~~~~~l~~l~~~~np~~c~  548 (629)
                      ++|.+|+ +..+++++.+++.+|+..|+
T Consensus       280 l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         280 LCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             ccccCCC-cccCCCCCHHHhCCCccccC
Confidence            9999997 47889999999999998884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.1e-26  Score=234.67  Aligned_cols=356  Identities=22%  Similarity=0.267  Sum_probs=201.5

Q ss_pred             EcCCCCceeecchhhhhcCccchhcccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEE
Q 040607           18 TLDNSFFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELH   97 (629)
Q Consensus        18 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~   97 (629)
                      +++.+.+++.+.  .+++      ..+++|+++++.|+..  +.++.+++|++|++++|.++ ++++  +.++++|++|+
T Consensus        28 ~l~~~~~~~~~~--~~~l------~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~   94 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDL------DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDIL   94 (384)
T ss_dssp             HTTCSSTTSEEC--HHHH------TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEE
T ss_pred             HhCCCCCCCccC--HHHh------CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccc
Confidence            444555555442  2333      3688999999999853  46889999999999999998 7764  99999999999


Q ss_pred             ccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcc
Q 040607           98 VDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQI  177 (629)
Q Consensus        98 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  177 (629)
                      +++|++.++.+  +.++++|+.|+++++.++ .++  .......+.......+.+.. ......................
T Consensus        95 L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~  168 (384)
T d2omza2          95 MNNNQIADITP--LANLTNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDL  168 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCC
T ss_pred             ccccccccccc--cccccccccccccccccc-ccc--cccccccccccccccccccc-cccccccccccccccccccchh
Confidence            99999988764  889999999999999887 443  35566788888888777652 1111111222222222111111


Q ss_pred             eeecCCCCcCCcccccEEEeccCCCCCcChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCC
Q 040607          178 YAQTESHSLTPKFQLNSIILSHGSGVTFPKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMP  257 (629)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  257 (629)
                      ..      +.............+. .........+++++.+++++|.+.+..|.   ...++|+.+++++|.++.+.  .
T Consensus       169 ~~------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~~~--~  236 (384)
T d2omza2         169 KP------LANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKDIG--T  236 (384)
T ss_dssp             GG------GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCCCG--G
T ss_pred             hh------hccccccccccccccc-cccccccccccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCCcc--h
Confidence            10      1111111112222211 22234455566677777777666643331   34556666666666655432  3


Q ss_pred             cccCCCccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcE
Q 040607          258 KHARRHLTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWR  337 (629)
Q Consensus       258 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  337 (629)
                      +..+++|+.+++++|.+.+..++..+++|++|+++++++. .++.  +..++.++.+++..|.+.+.  ..+..+++++.
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~  311 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTY  311 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSE
T ss_pred             hhcccccchhccccCccCCCCcccccccCCEeeccCcccC-CCCc--cccccccccccccccccccc--cccchhcccCe
Confidence            4555666666666666665555556666666666666555 2322  12255555555555555432  22444555555


Q ss_pred             EEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607          338 LQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKK  415 (629)
Q Consensus       338 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  415 (629)
                      |++++|++++..  .+..+++|++|++++|++++ ++ .++.+++|+.|++++|++++..|  +.++++|+.|+|++|
T Consensus       312 L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         312 LTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            555555555332  24455555555555555542 22 34444555555555554443322  444444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=1.4e-27  Score=235.81  Aligned_cols=250  Identities=27%  Similarity=0.419  Sum_probs=219.9

Q ss_pred             CCccEEEccCCCCcccc--c--CCCCCCccEEeccC-CCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCc
Q 040607          262 RHLTYLDVSDNFFQVHI--P--VGNMKSLSVLDLSK-NRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLW  336 (629)
Q Consensus       262 ~~L~~L~L~~n~~~~~~--~--~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  336 (629)
                      ..++.|+|+++.+.+..  |  ++++++|++|++++ |.+.|.+|..+.. +++|++|++++|++.+..+..+..+..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhc
Confidence            35788888888777532  2  77899999999986 7888889988775 99999999999999998888899999999


Q ss_pred             EEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCC-ccccCCCCcccCCCCccccCCCcccEEEcccC
Q 040607          337 RLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVS-EDVIMPNNHLEGPIPMEFCQLNFLQILDISKK  415 (629)
Q Consensus       337 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  415 (629)
                      .+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|.+++..+..+..+..+ .++++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            99999999998999999999999999999999988888888887776 788999999998888888877654 7999999


Q ss_pred             cCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCC
Q 040607          416 NIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYN  495 (629)
Q Consensus       416 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  495 (629)
                      ...+..|..+..        +++++.+++++|.+.+.+ ..+..+++|+.|+|++|++++.+|..|.++++|++|+|++|
T Consensus       208 ~~~~~~~~~~~~--------~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         208 MLEGDASVLFGS--------DKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EEEECCGGGCCT--------TSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccc--------cccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            988888888766        889999999999998654 46888999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcc
Q 040607          496 KLTGKIPPQLVELNALAVFSVAHNKLSG  523 (629)
Q Consensus       496 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~  523 (629)
                      ++++.+|+ +..+++|+.+++++|+..+
T Consensus       279 ~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         279 NLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             cccccCCC-cccCCCCCHHHhCCCcccc
Confidence            99998885 5778999999999998554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.6e-24  Score=212.93  Aligned_cols=264  Identities=20%  Similarity=0.219  Sum_probs=158.3

Q ss_pred             CCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCccccc--CCCCCCccEEecc
Q 040607          215 LKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIP--VGNMKSLSVLDLS  292 (629)
Q Consensus       215 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~L~~L~L~  292 (629)
                      .+.++=++.+++ .+|..++   +.+++|++++|.++.+++.+|.++++|++|++++|.+....+  |..+++|+.|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            445555555555 4554432   456666666666666666666666666666666666655444  5566666666666


Q ss_pred             CCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCc--ccCchhhhccccCCceeccccccC
Q 040607          293 KNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFI--GEIPESLSNCNLFGGLYLSDNHLS  370 (629)
Q Consensus       293 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~  370 (629)
                      +|+++ .+|...   .+.++.|++.+|.+....+..+.....+..++...|...  ...+..+..+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            66665 455433   345566666666665554445555555555655555322  222334444555555555555443


Q ss_pred             CCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCC
Q 040607          371 GKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLT  450 (629)
Q Consensus       371 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  450 (629)
                                              . ++..  .+++|+.|++++|...+..+..+..        ++.++.|++++|.++
T Consensus       164 ------------------------~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~--------~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         164 ------------------------T-IPQG--LPPSLTELHLDGNKITKVDAASLKG--------LNNLAKLGLSFNSIS  208 (305)
T ss_dssp             ------------------------S-CCSS--CCTTCSEEECTTSCCCEECTGGGTT--------CTTCCEEECCSSCCC
T ss_pred             ------------------------c-cCcc--cCCccCEEECCCCcCCCCChhHhhc--------ccccccccccccccc
Confidence                                    2 1111  1345666666666666555555544        566777777777776


Q ss_pred             CCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccc------cCCCCCCEEEcccCcCc
Q 040607          451 GEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQL------VELNALAVFSVAHNKLS  522 (629)
Q Consensus       451 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~  522 (629)
                      +..+..+.++++|++|+|++|+|+.+ |.+|.++++|++|++++|+|+.+....|      ..+++|+.|++++|+++
T Consensus       209 ~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         209 AVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            66666777777788888888877754 4567777888888888887775444343      34567888888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.7e-24  Score=212.69  Aligned_cols=267  Identities=23%  Similarity=0.243  Sum_probs=204.1

Q ss_pred             ccEEEccCCCCcccccCCCCCCccEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCC
Q 040607          264 LTYLDVSDNFFQVHIPVGNMKSLSVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGN  343 (629)
Q Consensus       264 L~~L~L~~n~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  343 (629)
                      .+.++-+++.++..++ .-.+++++|++++|+++ .++...+..+++|++|++++|.+....+..|..++.|+.|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~-~l~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCC-CCCCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            4455555555553322 22356777777777777 676666666778888888888777777777777888888888888


Q ss_pred             cCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcc--cCCCCccccCCCcccEEEcccCcCCCCC
Q 040607          344 HFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHL--EGPIPMEFCQLNFLQILDISKKNIFGSL  421 (629)
Q Consensus       344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~  421 (629)
                      +++.. |..  ....++.|++++|.+....+..+........+....+..  ....+..+..+++|+.+++++|.+... 
T Consensus        90 ~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-  165 (305)
T d1xkua_          90 QLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-  165 (305)
T ss_dssp             CCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred             ccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-
Confidence            77643 322  234677777777777765555666666777777766543  333456788889999999999988653 


Q ss_pred             CCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCC
Q 040607          422 PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKI  501 (629)
Q Consensus       422 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  501 (629)
                      |...          +++|+.|++++|..++..+..|..++.+++|++++|.++++.+..|.++++|++|+|++|+|+ .+
T Consensus       166 ~~~~----------~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~l  234 (305)
T d1xkua_         166 PQGL----------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV  234 (305)
T ss_dssp             CSSC----------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred             Cccc----------CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cc
Confidence            3332          678999999999998888889999999999999999999999999999999999999999999 66


Q ss_pred             CccccCCCCCCEEEcccCcCcccCCCccc------cccccCCCCCCCCCCCC
Q 040607          502 PPQLVELNALAVFSVAHNKLSGKTPDWVA------QFATFNGSSYDGNPFLS  547 (629)
Q Consensus       502 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------~~~~l~~l~~~~np~~c  547 (629)
                      |+.|..+++|++|++++|+|+...+..|.      ...+++.+++++|||.+
T Consensus       235 p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            88999999999999999999976554443      34678889999999976

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=216.05  Aligned_cols=227  Identities=19%  Similarity=0.168  Sum_probs=176.1

Q ss_pred             EEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceecc-c
Q 040607          288 VLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLS-D  366 (629)
Q Consensus       288 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~  366 (629)
                      .++.+++.++ .+|..+.   +++++|+|++|+++...+..|.++++|++|++++|.+....+..+..+..++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4567777777 7887653   578999999999998877889999999999999999988888888888888887764 4


Q ss_pred             cccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeeccc
Q 040607          367 NHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSC  446 (629)
Q Consensus       367 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  446 (629)
                      +.+....+..|+++++|+.|++++|.+....+..+...++|+.+++++|.+.+..+..+..        +++|+.|++++
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~--------~~~L~~L~l~~  162 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------LGNLTHLFLHG  162 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCS
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc--------ccchhhccccc
Confidence            5566566677777888888888888877666667777777888888888777666666655        67777788887


Q ss_pred             ccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          447 NKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       447 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |.+++..+.+|.++++|+.+++++|+++++.|..|.++++|++|++++|++.+..|..|..+++|++|++++|++.|.++
T Consensus       163 N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            77776666777777778888888777777777777777777888888877777666777777777777777777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-25  Score=215.67  Aligned_cols=206  Identities=21%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             CCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCC-CCcccCCCCccccCCCcccEEEc
Q 040607          334 NLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMP-NNHLEGPIPMEFCQLNFLQILDI  412 (629)
Q Consensus       334 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l  412 (629)
                      ++++|++++|++++..+..|.++++|++|++++|.+....+..+..++.++.+... .+.+....+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34555555555544444445555555555555555544444444444444444332 23333334444555555555555


Q ss_pred             ccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEEC
Q 040607          413 SKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDL  492 (629)
Q Consensus       413 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  492 (629)
                      ++|.+....+..+..        .++|+.+++++|.+++..+..|..+++|+.|++++|+++++++.+|.++++|+.+++
T Consensus       113 ~~n~~~~~~~~~~~~--------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         113 DRCGLQELGPGLFRG--------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcccccccccccch--------hcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            555544433333333        444555555555555433444445555555555555555554555555555555555


Q ss_pred             cCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          493 SYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       493 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      ++|++++..|..|..+++|++||+++|++.+..+..+..+.+++.+++++|||.|
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            5555554445555555555555555555554444444445555555555555555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.2e-24  Score=204.29  Aligned_cols=204  Identities=19%  Similarity=0.176  Sum_probs=162.0

Q ss_pred             CCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCcccc
Q 040607          308 CFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVI  387 (629)
Q Consensus       308 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  387 (629)
                      ...+.+++.+++.++. +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++. ++ .++.+++|+.|+
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            4567778999999885 455443  579999999999987777889999999999999998873 33 356788888888


Q ss_pred             CCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEe
Q 040607          388 MPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLN  467 (629)
Q Consensus       388 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  467 (629)
                      +++|++.. .+..+..+++|+.|++++|.+.+..+..+..        +.+++.|++++|.++...+..+..+++++.++
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccccccc-cccccccccccccccccccccceeecccccc--------ccccccccccccccceeccccccccccchhcc
Confidence            88888874 4567788888888888888887766666655        77888888888888866667777788888888


Q ss_pred             ccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          468 VSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       468 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      +++|+++++++..|..+++|++|+|++|+|+ .+|+.+..+++|+.|++++|++.|.+.
T Consensus       155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            8888888887778888888888888888888 667777778888888888888887654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7e-23  Score=196.31  Aligned_cols=205  Identities=22%  Similarity=0.205  Sum_probs=149.6

Q ss_pred             CCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEE
Q 040607          331 NLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQIL  410 (629)
Q Consensus       331 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  410 (629)
                      ....+.+.+.+++.++. +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++.. + .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence            34455666777777773 454442  4677888888888766666777788888888888877643 2 34667788888


Q ss_pred             EcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEE
Q 040607          411 DISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESL  490 (629)
Q Consensus       411 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  490 (629)
                      ++++|++... +..+..        +++|+.|++++|.+.+..+..+..+.++++|++++|.++.+++..+..+++++.+
T Consensus        83 ~Ls~N~l~~~-~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQT--------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             ECCSSCCSSC-CCCTTT--------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccc-cccccc--------ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            8888877543 334444        6778888888888776666677777888888888888887777777778888888


Q ss_pred             ECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          491 DLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       491 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      ++++|++++..++.|..+++|++|++++|+++ .+|..+..+.+++.++++||||.| +|.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C-dC~  212 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC-NCE  212 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC-SGG
T ss_pred             ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC-Ccc
Confidence            88888888777777777888888888888887 555555667777888888888888 664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=8.3e-18  Score=168.07  Aligned_cols=70  Identities=24%  Similarity=0.319  Sum_probs=44.8

Q ss_pred             CCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccC
Q 040607          404 LNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSN  483 (629)
Q Consensus       404 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  483 (629)
                      +++|++|++++|++.. +|..           +++|+.|++++|+++ .+|..   +++|++|++++|+++.+ |..   
T Consensus       283 ~~~L~~L~Ls~N~l~~-lp~~-----------~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~l-p~~---  342 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-LPAL-----------PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLREF-PDI---  342 (353)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC-----------CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSC-CCC---
T ss_pred             CCCCCEEECCCCccCc-cccc-----------cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCCC-Ccc---
Confidence            4567777777777653 3322           467777888888777 45532   46788888888888754 331   


Q ss_pred             CCCCCEEECc
Q 040607          484 LKQTESLDLS  493 (629)
Q Consensus       484 l~~L~~L~L~  493 (629)
                      ..+|+.|.+.
T Consensus       343 ~~~L~~L~~~  352 (353)
T d1jl5a_         343 PESVEDLRMN  352 (353)
T ss_dssp             CTTCCEEECC
T ss_pred             ccccCeeECc
Confidence            2456777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=7.6e-18  Score=168.33  Aligned_cols=95  Identities=32%  Similarity=0.392  Sum_probs=63.4

Q ss_pred             CCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEE
Q 040607           66 TSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQEL  145 (629)
Q Consensus        66 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  145 (629)
                      .++++|||+++.++ .+|+    ..++|++|++++|+++.++. .   ..+|+.|++++|.++ .++.  +  .+.|++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~lp~-~---~~~L~~L~l~~n~l~-~l~~--l--p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTELPE-L---PQSLKSLLVDNNNLK-ALSD--L--PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS-CCCS--C--CTTCCEE
T ss_pred             cCCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCccccc-c---hhhhhhhhhhhcccc-hhhh--h--ccccccc
Confidence            36888888888887 7774    24578888888888876643 2   357888888888776 5542  1  1357778


Q ss_pred             EccCcccccccCCcccCCCCCCcEEECCCCcc
Q 040607          146 KLSNNYFQIPISLGPLYNHSNLKIFDSENNQI  177 (629)
Q Consensus       146 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  177 (629)
                      ++++|.+. .++  .++.+++|+.|+++++.+
T Consensus       104 ~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         104 GVSNNQLE-KLP--ELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             ECCSSCCS-SCC--CCTTCTTCCEEECCSSCC
T ss_pred             cccccccc-ccc--chhhhccceeeccccccc
Confidence            87777766 333  245566666666665544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.3e-18  Score=162.06  Aligned_cols=203  Identities=25%  Similarity=0.314  Sum_probs=126.6

Q ss_pred             eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccc
Q 040607           46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN  125 (629)
Q Consensus        46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  125 (629)
                      .++++.+++++..  .++++.+|++|++.+|.++ +++  ++..+++|++|++++|+++++.+  +.++++|+++++++|
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch--hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            4567777777654  3566778888888888887 664  47888888888888888877654  788888888888888


Q ss_pred             cCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCc
Q 040607          126 QLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTF  205 (629)
Q Consensus       126 ~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  205 (629)
                      .++ .++  .+.++++|++++++++...+   ...+...+.++.+.++.+.+...                         
T Consensus        96 ~~~-~i~--~l~~l~~L~~l~l~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~-------------------------  144 (227)
T d1h6ua2          96 PLK-NVS--AIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNI-------------------------  144 (227)
T ss_dssp             CCS-CCG--GGTTCTTCCEEECTTSCCCC---CGGGTTCTTCCEEECCSSCCCCC-------------------------
T ss_pred             ccc-ccc--cccccccccccccccccccc---cchhccccchhhhhchhhhhchh-------------------------
Confidence            877 554  57788888888888876552   12355666666776666554221                         


Q ss_pred             ChhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCCCCcccccCCCCCC
Q 040607          206 PKFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDNFFQVHIPVGNMKS  285 (629)
Q Consensus       206 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~  285 (629)
                       ..+..+++|++|++++|.+.+..+   +..+++|+.|++++|.++++.  .++.+++|++|++++|++++..+++++++
T Consensus       145 -~~~~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~  218 (227)
T d1h6ua2         145 -SPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSPLANTSN  218 (227)
T ss_dssp             -GGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGGGTTCTT
T ss_pred             -hhhccccccccccccccccccchh---hcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcccccCCC
Confidence             124445566666666666542211   234555555555555544432  24444555555555555444444444555


Q ss_pred             ccEEecc
Q 040607          286 LSVLDLS  292 (629)
Q Consensus       286 L~~L~L~  292 (629)
                      |+.|+++
T Consensus       219 L~~L~ls  225 (227)
T d1h6ua2         219 LFIVTLT  225 (227)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEee
Confidence            5555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=164.37  Aligned_cols=219  Identities=16%  Similarity=0.091  Sum_probs=121.6

Q ss_pred             cEEeccCCCCCcccchhhhhCCCCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCccc-CchhhhccccCCceecc
Q 040607          287 SVLDLSKNRLIGKIPERLAMGCFSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGE-IPESLSNCNLFGGLYLS  365 (629)
Q Consensus       287 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~  365 (629)
                      +.++.++..++ .+|..++   +++++|++++|+++...+..|.++++|++|++++|.+... .+..|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            34555555555 5555432   3566666666666655555566666666666666655432 23445556666666554


Q ss_pred             c-cccCCCccccccCCCCCccccCCCCcccCCCCc-cccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeee
Q 040607          366 D-NHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPM-EFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLD  443 (629)
Q Consensus       366 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~  443 (629)
                      . |.+....+..|.++++|+.+++++|.+....+. .+..++.+..+...++.+....+..+...       ...++.|+
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~-------~~~l~~L~  159 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-------SFESVILW  159 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS-------BSSCEEEE
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc-------cccceeee
Confidence            3 344444445555566666666666655433221 22334445555555555555444444331       23566677


Q ss_pred             cccccCCCCCccccccccccc-eEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcc
Q 040607          444 LSCNKLTGEIPLRIGNLTRIH-TLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVA  517 (629)
Q Consensus       444 L~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  517 (629)
                      +++|+++...+..+. ..+++ .+++++|.++.+++..|.++++|++|++++|+++...+..|.++++|+.+++.
T Consensus       160 l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         160 LNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            777777643333333 34433 33566677777666667777777777777777775545556666666555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.3e-17  Score=155.06  Aligned_cols=186  Identities=18%  Similarity=0.254  Sum_probs=112.0

Q ss_pred             CCCcEEEccCcccccccCcccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccC
Q 040607          309 FSLRYLVLSNNKMKGHIFSKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIM  388 (629)
Q Consensus       309 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  388 (629)
                      .+|++|++.+|.++..  ..+..+++|++|++++|.+++..  .+..+++++.+++++|.++. + ..+..++.|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccccccc
Confidence            3455555555555432  22444555555555555554322  24555555555555555442 1 13445555555555


Q ss_pred             CCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEec
Q 040607          389 PNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNV  468 (629)
Q Consensus       389 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  468 (629)
                      +++...+.  ..+...+.+..+.++++.+....+  +..        +++|+.|++++|.+.+.  ..++++++|++|+|
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~--------~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~L  180 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAG--------LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKA  180 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGG--------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhhh--hcc--------ccccccccccccccccc--hhhcccccceeccc
Confidence            55554432  234555667777777666543322  222        66778888888877632  23777888888888


Q ss_pred             cCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607          469 SHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH  518 (629)
Q Consensus       469 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  518 (629)
                      ++|+++++.  .|.++++|++|++++|++++. + .+.++++|+.|++++
T Consensus       181 s~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         181 DDNKISDIS--PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCCCCG--GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             CCCccCCCh--hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            888887653  377888888888888888854 3 377888888888864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.8e-20  Score=193.44  Aligned_cols=111  Identities=18%  Similarity=0.057  Sum_probs=60.5

Q ss_pred             cCCCccEEEccCCCCccccc-------CCCCCCccEEeccCCCCCcccchhh---hhCCCCCcEEEccCcccccccCccc
Q 040607          260 ARRHLTYLDVSDNFFQVHIP-------VGNMKSLSVLDLSKNRLIGKIPERL---AMGCFSLRYLVLSNNKMKGHIFSKK  329 (629)
Q Consensus       260 ~~~~L~~L~L~~n~~~~~~~-------~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~  329 (629)
                      ..+.++.+++++|.+.....       ......++.+++++|.+........   ....+.++.+++++|.+.......+
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            34556666666665532211       4445677777777776653221111   1235677777777777653222211


Q ss_pred             -----CCCCCCcEEEccCCcCcccCch----hhhccccCCceeccccccC
Q 040607          330 -----INLTNLWRLQLDGNHFIGEIPE----SLSNCNLFGGLYLSDNHLS  370 (629)
Q Consensus       330 -----~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~  370 (629)
                           .....|+.+++++|.++.....    .+...++|++|++++|.+.
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeeccc
Confidence                 2345677777777766544322    2334456666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-20  Score=195.20  Aligned_cols=111  Identities=20%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             CCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCC----CcccCCCCCCCeeecccccCCc----ccCccccC-
Q 040607           67 SLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVP----PWCLGNMTSLQVLNISSNQLTG----NISSPPLK-  137 (629)
Q Consensus        67 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~----~i~~~~l~-  137 (629)
                      +|++||++++++++....+.+..++++++|+|++|.++...    +..+..+++|++|||++|.+++    .+.. .+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~-~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH-HHhc
Confidence            57888888888874322334666788888888888776322    2345678888888888887752    1111 222 


Q ss_pred             CCCCCCEEEccCccccccc---CCcccCCCCCCcEEECCCCcce
Q 040607          138 HLKSIQELKLSNNYFQIPI---SLGPLYNHSNLKIFDSENNQIY  178 (629)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~~~  178 (629)
                      ...+|++|++++|.++...   -...+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            2346888888888776211   0124556677777777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-17  Score=156.75  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=51.7

Q ss_pred             eeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCcc-CCCcccCCCCCCCeeeccc
Q 040607           46 FRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYG-VPPWCLGNMTSLQVLNISS  124 (629)
Q Consensus        46 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~  124 (629)
                      +++.++..++ .+|+.+.  +++++|++++|.++ .++..+|.++++|++|++++|.+.. +++.+|.++++++++++..
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4444444444 3333321  34555555555554 5554455555555555555555443 3334455555555555443


Q ss_pred             -ccCCcccCccccCCCCCCCEEEccCcccc
Q 040607          125 -NQLTGNISSPPLKHLKSIQELKLSNNYFQ  153 (629)
Q Consensus       125 -n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  153 (629)
                       |.+. .++...|.++++|+++++++|.+.
T Consensus        88 ~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLL-YINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCC-EECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccc-ccccccccccccccccccchhhhc
Confidence             3343 344334555555555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=2.7e-18  Score=155.11  Aligned_cols=173  Identities=18%  Similarity=0.216  Sum_probs=119.0

Q ss_pred             CceeccccccCCCccccccCCCCCccccCCCCcccC-CCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccC
Q 040607          360 GGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEG-PIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNS  438 (629)
Q Consensus       360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  438 (629)
                      +.++.+++.++ .+|..+.  +.+++|+|++|.++. ..+..|..+++|++|++++|.+....+..+..        +++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~--------~~~   79 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG--------ASH   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT--------CTT
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc--------ccc
Confidence            45666666666 3444332  466777777777754 34556677788888888888877777777765        777


Q ss_pred             CCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEccc
Q 040607          439 MSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAH  518 (629)
Q Consensus       439 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  518 (629)
                      |+.|+|++|+++...+.+|.++++|++|+|++|+|+++++++|.++++|++|+|++|.+....+.. .-...++.+.+..
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~  158 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNG  158 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSG
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccC
Confidence            888888888887666777888888888888888888887888888888888888888776332211 1112355556677


Q ss_pred             CcCcccCCCccccccccCCCCCCCCCCCC
Q 040607          519 NKLSGKTPDWVAQFATFNGSSYDGNPFLS  547 (629)
Q Consensus       519 N~l~~~~~~~~~~~~~l~~l~~~~np~~c  547 (629)
                      |.+.+..|..   +..+...++..|.+.|
T Consensus       159 ~~~~c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         159 GAARCGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             GGCBBCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             CCeEeCCChh---hcCCEeeecCHhhCcC
Confidence            7777766653   3445566788888877

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=2e-17  Score=149.23  Aligned_cols=132  Identities=23%  Similarity=0.295  Sum_probs=79.7

Q ss_pred             ccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCC-CCCcCCCccccCCCccCCCeeecccccCCCCCccccccccc
Q 040607          384 EDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSL-PSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTR  462 (629)
Q Consensus       384 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  462 (629)
                      +.++.++++++ .+|..+.  +++++|+|++|++++.+ +..|..        +++|+.|++++|.+....+..|..+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~--------l~~L~~L~L~~N~i~~~~~~~~~~~~~   79 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR--------LPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG--------CTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCC--------CceEeeeeccccccccccccccccccc
Confidence            34556666666 3333331  45666666666665432 334443        566666666666666555666666666


Q ss_pred             cceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccCC
Q 040607          463 IHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKTP  526 (629)
Q Consensus       463 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  526 (629)
                      |++|+|++|+|+++++++|.++++|++|+|++|+|+++.|+.|..+++|++|++++|++.+.++
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            6666666666666666666666666666666666666556666666666666666666665444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=4.3e-17  Score=149.24  Aligned_cols=180  Identities=22%  Similarity=0.318  Sum_probs=116.0

Q ss_pred             eeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccccc
Q 040607           47 RAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ  126 (629)
Q Consensus        47 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  126 (629)
                      .++..+.+++.++.  ..+..|++|++++|.++ .++  ++..+++|++|++++|+++++++  +.++++|++|++++|+
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCC-Cch--hHhhCCCCCEEeCCCccccCccc--cccCcccccccccccc
Confidence            45666666655442  34667888888888887 554  47778888888888888877653  6778888888888888


Q ss_pred             CCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceeecCCCCcCCcccccEEEeccCCCCCcC
Q 040607          127 LTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQTESHSLTPKFQLNSIILSHGSGVTFP  206 (629)
Q Consensus       127 l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  206 (629)
                      ++ .++  .+..+++|+.|++++|.+. ..  ..+..++.++.+++++|.+...                          
T Consensus       102 i~-~l~--~l~~l~~L~~L~l~~~~~~-~~--~~l~~l~~l~~l~~~~n~l~~~--------------------------  149 (210)
T d1h6ta2         102 VK-DLS--SLKDLKKLKSLSLEHNGIS-DI--NGLVHLPQLESLYLGNNKITDI--------------------------  149 (210)
T ss_dssp             CC-CGG--GGTTCTTCCEEECTTSCCC-CC--GGGGGCTTCCEEECCSSCCCCC--------------------------
T ss_pred             cc-ccc--ccccccccccccccccccc-cc--cccccccccccccccccccccc--------------------------
Confidence            87 565  4778888888888888765 22  3466777777777777765322                          


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEcc
Q 040607          207 KFLYHQHDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVS  270 (629)
Q Consensus       207 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~  270 (629)
                      ..+..+++|+++++++|++.+ ++.  +..+++|+.|++++|.++++.  .+.++++|+.|+++
T Consensus       150 ~~~~~l~~L~~l~l~~n~l~~-i~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         150 TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEE
T ss_pred             ccccccccccccccccccccc-ccc--ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEcc
Confidence            223445566666666666653 222  244555555555555554432  24444555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1e-16  Score=146.72  Aligned_cols=145  Identities=22%  Similarity=0.318  Sum_probs=86.7

Q ss_pred             hccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccC
Q 040607          354 SNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG  433 (629)
Q Consensus       354 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  433 (629)
                      +.+++|++|++++|++++..  .++.+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+...  ..+..      
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l~~------  132 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVH------  132 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGG------
T ss_pred             hhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccccccccccc--ccccc------
Confidence            33444444444444443221  13334444444444444442 12 355566666666666655332  12222      


Q ss_pred             CCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCE
Q 040607          434 KPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAV  513 (629)
Q Consensus       434 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  513 (629)
                        ++.++.+++++|.+++  +..+..+++|+++++++|+++++.  .+.++++|++|++++|+++. +| .+.++++|++
T Consensus       133 --l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~  204 (210)
T d1h6ta2         133 --LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV  204 (210)
T ss_dssp             --CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred             --cccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCE
Confidence              5667777777777763  234567788888888888887653  37788888888888888874 44 4788888888


Q ss_pred             EEccc
Q 040607          514 FSVAH  518 (629)
Q Consensus       514 L~l~~  518 (629)
                      |++++
T Consensus       205 L~Ls~  209 (210)
T d1h6ta2         205 LELFS  209 (210)
T ss_dssp             EEEEE
T ss_pred             EEccC
Confidence            88864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.5e-16  Score=142.88  Aligned_cols=141  Identities=30%  Similarity=0.451  Sum_probs=73.8

Q ss_pred             hccccCCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCCCCCCcCCCccccC
Q 040607          354 SNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGSLPSCFNPFSIKQG  433 (629)
Q Consensus       354 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  433 (629)
                      +.+++|++|++++|++++..+  ++.+++|+.|++++|.+... + .+..++.|+.|++++|......+  +..      
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~~--~~~------  126 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDP--LKN------  126 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCGG--GTT------
T ss_pred             ccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccccccccccccc--cch------
Confidence            334444444444444432221  34444444444444444321 1 24455566666666555433211  222      


Q ss_pred             CCccCCCeeecccccCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCE
Q 040607          434 KPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAV  513 (629)
Q Consensus       434 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  513 (629)
                        +++|+.|++++|.+. .++ .+..+++|+.|++++|++++..  .++++++|++|++++|+++. ++ .+.++++|+.
T Consensus       127 --l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         127 --LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLES  198 (199)
T ss_dssp             --CTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSE
T ss_pred             --hhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCc
Confidence              556666666666665 222 4566667777777777666543  36667777777777777663 22 3566666665


Q ss_pred             E
Q 040607          514 F  514 (629)
Q Consensus       514 L  514 (629)
                      |
T Consensus       199 L  199 (199)
T d2omxa2         199 L  199 (199)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.6e-16  Score=142.76  Aligned_cols=119  Identities=25%  Similarity=0.392  Sum_probs=83.4

Q ss_pred             eeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccccc
Q 040607           47 RAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQ  126 (629)
Q Consensus        47 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~  126 (629)
                      ..++.+.+++...  ...++++++|++++|.++ ++.  +++.+++|++|++++|+++++.+  +.++++|++|++++|.
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc--ccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence            4566666665443  345677888888888876 554  47777888888888888877654  7788888888888887


Q ss_pred             CCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcce
Q 040607          127 LTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIY  178 (629)
Q Consensus       127 l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  178 (629)
                      +. .++  .++++++|++|+++++.+.. .  ..+..+++|+.|++++|.+.
T Consensus        96 ~~-~~~--~l~~l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2          96 IA-DIT--PLANLTNLTGLTLFNNQITD-I--DPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             CC-CCG--GGTTCTTCSEEECCSSCCCC-C--GGGTTCTTCSEEECCSSCCC
T ss_pred             cc-ccc--cccccccccccccccccccc-c--cccchhhhhHHhhhhhhhhc
Confidence            76 554  47778888888887776652 1  24666777777777777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=147.02  Aligned_cols=61  Identities=25%  Similarity=0.199  Sum_probs=30.6

Q ss_pred             CCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccc
Q 040607           65 MTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSN  125 (629)
Q Consensus        65 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  125 (629)
                      ..+|++||++++.++.+.....+..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            3455566665555542222223455555555555555554433344455555555555553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=7.3e-15  Score=121.04  Aligned_cols=119  Identities=20%  Similarity=0.222  Sum_probs=80.4

Q ss_pred             ceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeeccc
Q 040607           45 GFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISS  124 (629)
Q Consensus        45 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  124 (629)
                      |+|+|++|.++. ++ .++++++|++|++++|.++ ++|+ .|..+++|++|++++|.+++++  .+.++++|++|++++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchh-hhhhhhcccccccccccccccC--ccccccccCeEECCC
Confidence            467777777763 33 3677778888888888877 6765 5777788888888888877653  477788888888888


Q ss_pred             ccCCcccCc-cccCCCCCCCEEEccCcccccc--cCCcccCCCCCCcEE
Q 040607          125 NQLTGNISS-PPLKHLKSIQELKLSNNYFQIP--ISLGPLYNHSNLKIF  170 (629)
Q Consensus       125 n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L  170 (629)
                      |+++ .++. ..+..+++|++|++++|.++..  ........+|+|+.+
T Consensus        75 N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8777 5542 3567777888888888777631  122223345555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-15  Score=130.50  Aligned_cols=124  Identities=17%  Similarity=0.215  Sum_probs=90.4

Q ss_pred             ccceeeccCcccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           43 FIGFRAMDGTALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        43 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      .+++|+|++|+|+.. +..+..+++|++|+|++|.++ +++  .|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus        19 ~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            456777777777753 555567788888888888887 664  4778888888888888888877766777888888888


Q ss_pred             ccccCCcccCc-cccCCCCCCCEEEccCcccccccC---CcccCCCCCCcEEEC
Q 040607          123 SSNQLTGNISS-PPLKHLKSIQELKLSNNYFQIPIS---LGPLYNHSNLKIFDS  172 (629)
Q Consensus       123 ~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l  172 (629)
                      ++|.++ .++. ..+..+++|++|++++|.++. .+   ...+..+++|+.||-
T Consensus        95 ~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          95 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             cccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            888877 5542 357778888888888887762 22   124566778887764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-14  Score=124.34  Aligned_cols=89  Identities=16%  Similarity=0.149  Sum_probs=42.1

Q ss_pred             ccCCCeeecccc-cCCCCCccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEE
Q 040607          436 LNSMSGLDLSCN-KLTGEIPLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVF  514 (629)
Q Consensus       436 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  514 (629)
                      +++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.+.+|.++++|++|+|++|+|+...+..|.. .+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence            444555555433 244333444555555555555555555554555555555555555555555333333322 235555


Q ss_pred             EcccCcCcccC
Q 040607          515 SVAHNKLSGKT  525 (629)
Q Consensus       515 ~l~~N~l~~~~  525 (629)
                      ++++|++.|.+
T Consensus       109 ~L~~Np~~C~C  119 (156)
T d2ifga3         109 VLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCCCCG
T ss_pred             ccCCCcccCCc
Confidence            55555554433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2e-14  Score=118.35  Aligned_cols=105  Identities=29%  Similarity=0.504  Sum_probs=92.2

Q ss_pred             CEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCCCCEEEcc
Q 040607           69 KLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKSIQELKLS  148 (629)
Q Consensus        69 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~  148 (629)
                      |+|+|++|.++ .++  .+.++++|++|++++|+++.+++ .|..+++|++|++++|.++ .++  .+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccCcchh-hhhhhhccccccccccccc-ccC--ccccccccCeEECC
Confidence            68999999998 776  48999999999999999998754 7899999999999999998 675  59999999999999


Q ss_pred             CcccccccCCcccCCCCCCcEEECCCCcceee
Q 040607          149 NNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ  180 (629)
Q Consensus       149 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  180 (629)
                      +|.++.......+..+++|+.|++++|++...
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            99998433446788999999999999998644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.6e-15  Score=144.07  Aligned_cols=154  Identities=19%  Similarity=0.130  Sum_probs=70.7

Q ss_pred             CCCCEEEccCCCCCCCCChhHHhcCCCCcEEeccCccccccCCCCcccCCCccEEEccCC-CCcccc--c-CCCCCCccE
Q 040607          213 HDLKHVNLSHINLRGEFPNWLSENNTKLQTLVQVNNYLSGIFQMPKHARRHLTYLDVSDN-FFQVHI--P-VGNMKSLSV  288 (629)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~--~-~~~~~~L~~  288 (629)
                      .+|++|+++++.+++.....++..+++|++|+++++.+++.....+..+++|++|+++++ .++...  . ...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            456666766666554433444455666666666666554433334444555555555553 232111  1 234555556


Q ss_pred             EeccCCC-CCcc-cchhhhhCCCCCcEEEccCc--cccccc-CcccCCCCCCcEEEccCC-cCcccCchhhhccccCCce
Q 040607          289 LDLSKNR-LIGK-IPERLAMGCFSLRYLVLSNN--KMKGHI-FSKKINLTNLWRLQLDGN-HFIGEIPESLSNCNLFGGL  362 (629)
Q Consensus       289 L~L~~n~-l~~~-~~~~~~~~~~~L~~L~L~~n--~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  362 (629)
                      |++++|. +++. +...+...++.|+.|+++++  .++... ......+++|++|++++| .++......+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            6655542 2211 11222222345555555543  122111 111223455555555554 2333333444444555555


Q ss_pred             eccc
Q 040607          363 YLSD  366 (629)
Q Consensus       363 ~l~~  366 (629)
                      ++++
T Consensus       206 ~L~~  209 (284)
T d2astb2         206 SLSR  209 (284)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            5554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.3e-15  Score=128.36  Aligned_cols=114  Identities=17%  Similarity=0.182  Sum_probs=97.2

Q ss_pred             hcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeecccccCCcccCccccCCCCC
Q 040607           62 IKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNISSNQLTGNISSPPLKHLKS  141 (629)
Q Consensus        62 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~  141 (629)
                      +.+...+|+|+|++|+++ .++. .+..+++|++|++++|+|+.+.  .|.++++|++|++++|.++ .++...+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCccC--CcccCcchhhhhccccccc-CCCccccccccc
Confidence            567888999999999998 7864 6788999999999999998874  5899999999999999998 787756788999


Q ss_pred             CCEEEccCcccccccCCcccCCCCCCcEEECCCCcceee
Q 040607          142 IQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ  180 (629)
Q Consensus       142 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  180 (629)
                      |++|++++|.++.......+..+++|+.|++++|++...
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccc
Confidence            999999999987332335688899999999999988543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.3e-13  Score=116.03  Aligned_cols=113  Identities=18%  Similarity=0.221  Sum_probs=98.9

Q ss_pred             ccCCCeeecccccCCCCCccccccccccceEeccCc-cccccccccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEE
Q 040607          436 LNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHN-KLTGLILSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVF  514 (629)
Q Consensus       436 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  514 (629)
                      +...+.++++++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.|..|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            445667889998888 67788889999999999876 5999888999999999999999999998888999999999999


Q ss_pred             EcccCcCcccCCCccccccccCCCCCCCCCCCCCCCC
Q 040607          515 SVAHNKLSGKTPDWVAQFATFNGSSYDGNPFLSSSCN  551 (629)
Q Consensus       515 ~l~~N~l~~~~~~~~~~~~~l~~l~~~~np~~c~~C~  551 (629)
                      +|++|+++...+..+..+ +++.+++++|||.| +|+
T Consensus        86 ~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C-~C~  120 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGL-SLQELVLSGNPLHC-SCA  120 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCC-CGG
T ss_pred             eccCCCCcccChhhhccc-cccccccCCCcccC-Cch
Confidence            999999997766666544 68999999999999 775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=1.7e-14  Score=142.99  Aligned_cols=247  Identities=18%  Similarity=0.197  Sum_probs=134.3

Q ss_pred             cccCCCccEEEccCCCCccccc------CCCCCCccEEeccCCCCCc---ccchhh------hhCCCCCcEEEccCcccc
Q 040607          258 KHARRHLTYLDVSDNFFQVHIP------VGNMKSLSVLDLSKNRLIG---KIPERL------AMGCFSLRYLVLSNNKMK  322 (629)
Q Consensus       258 ~~~~~~L~~L~L~~n~~~~~~~------~~~~~~L~~L~L~~n~l~~---~~~~~~------~~~~~~L~~L~L~~n~l~  322 (629)
                      +.....++.|++++|.+.....      +...++|+.++++++....   ..+...      ...+++|++|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            4456778888888887653321      5667788888887765431   111111      123556777777766665


Q ss_pred             cccC----cccCCCCCCcEEEccCCcCcccCchhhhccccCCceeccccccCCCccccccCCCCCccccCCCCcccCC--
Q 040607          323 GHIF----SKKINLTNLWRLQLDGNHFIGEIPESLSNCNLFGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGP--  396 (629)
Q Consensus       323 ~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--  396 (629)
                      ....    ..+...++|++|++++|.+.......+..  .+..+..         .......+.++.+.+++|.+...  
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~---------~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAV---------NKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHHH---------HHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cccccchhhhhcccccchheecccccccccccccccc--ccccccc---------ccccccCcccceeeccccccccccc
Confidence            4321    22234566666666666553221111100  0000000         00112234555555555544321  


Q ss_pred             --CCccccCCCcccEEEcccCcCCCC-----CCCCcCCCccccCCCccCCCeeecccccCCCC----Cccccccccccce
Q 040607          397 --IPMEFCQLNFLQILDISKKNIFGS-----LPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGE----IPLRIGNLTRIHT  465 (629)
Q Consensus       397 --~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~  465 (629)
                        +...+...+.|++|++++|.+...     ....+..        .++|+.|++++|.++..    +...+..+++|++
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~--------~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY--------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG--------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcc--------hhhhcccccccccccccccccccccccccccchh
Confidence              122234456677777777766421     1122222        66777888888776422    2345667788888


Q ss_pred             EeccCcccccccccc----ccC--CCCCCEEECcCCcCCCC----CCcccc-CCCCCCEEEcccCcCcc
Q 040607          466 LNVSHNKLTGLILST----FSN--LKQTESLDLSYNKLTGK----IPPQLV-ELNALAVFSVAHNKLSG  523 (629)
Q Consensus       466 L~Ls~n~l~~~~~~~----~~~--l~~L~~L~L~~N~l~~~----~~~~~~-~l~~L~~L~l~~N~l~~  523 (629)
                      |+|++|.|++.....    +..  .+.|++|++++|+|+..    +...+. ..++|+.|++++|++..
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            888888887653322    322  36788888888888632    122232 46788888888888864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=3.7e-14  Score=140.43  Aligned_cols=237  Identities=16%  Similarity=0.131  Sum_probs=146.4

Q ss_pred             hcCCCCcEEeccCccccccC----CCCcccCCCccEEEccCCCCcccc---c---------CCCCCCccEEeccCCCCCc
Q 040607          235 ENNTKLQTLVQVNNYLSGIF----QMPKHARRHLTYLDVSDNFFQVHI---P---------VGNMKSLSVLDLSKNRLIG  298 (629)
Q Consensus       235 ~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~L~~n~~~~~~---~---------~~~~~~L~~L~L~~n~l~~  298 (629)
                      .....++.|++++|.+....    ...+...++|+.++++++......   +         +..+++|+.|++++|.+.+
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            56789999999999875432    234667799999999987544221   1         5678999999999999875


Q ss_pred             ccchhh---hhCCCCCcEEEccCcccccccCcc-------------cCCCCCCcEEEccCCcCccc----Cchhhhcccc
Q 040607          299 KIPERL---AMGCFSLRYLVLSNNKMKGHIFSK-------------KINLTNLWRLQLDGNHFIGE----IPESLSNCNL  358 (629)
Q Consensus       299 ~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~  358 (629)
                      .....+   ....++|++|++++|.+.......             ....+.|+.+++++|.+...    +...+..++.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            422222   234789999999999875322111             12456788888888876533    2334456677


Q ss_pred             CCceeccccccCCCccccccCCCCCccccCCCCcccCCCCccccCCCcccEEEcccCcCCCC----CCCCcCCCccccCC
Q 040607          359 FGGLYLSDNHLSGKIPRWLGNLSVSEDVIMPNNHLEGPIPMEFCQLNFLQILDISKKNIFGS----LPSCFNPFSIKQGK  434 (629)
Q Consensus       359 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~~~~  434 (629)
                      ++.|++++|.+.......                   .+...+..+++|+.|++++|.+...    +...+..       
T Consensus       188 L~~L~L~~n~i~~~g~~~-------------------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-------  241 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEH-------------------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-------  241 (344)
T ss_dssp             CCEEECCSSCCCHHHHHH-------------------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-------
T ss_pred             hccccccccccccccccc-------------------chhhhhcchhhhcccccccccccccccccccccccc-------
Confidence            777777777664210000                   0111234445566666665554221    1112222       


Q ss_pred             CccCCCeeecccccCCCCCc----cccc--cccccceEeccCccccccc----ccccc-CCCCCCEEECcCCcCC
Q 040607          435 PLNSMSGLDLSCNKLTGEIP----LRIG--NLTRIHTLNVSHNKLTGLI----LSTFS-NLKQTESLDLSYNKLT  498 (629)
Q Consensus       435 ~~~~L~~L~L~~n~l~~~~~----~~~~--~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~  498 (629)
                       .++|+.|++++|.+++...    ..+.  ..+.|++|++++|.|+...    ...+. +++.|+.|++++|.+.
T Consensus       242 -~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         242 -WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             -CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             -cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             5666677777776653222    2222  2357888899888886532    22332 5678999999999886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=3.4e-14  Score=127.76  Aligned_cols=128  Identities=20%  Similarity=0.245  Sum_probs=95.6

Q ss_pred             ceeeccCc--ccCccchhhhcCCCCCCEEEccCCcCCCccCccccCCCCCCcEEEccCCcCccCCCcccCCCCCCCeeec
Q 040607           45 GFRAMDGT--ALDKNFLQVIKSMTSLKLLSLSNSRLNGTILDQGLCEFVHLQELHVDHNNLYGVPPWCLGNMTSLQVLNI  122 (629)
Q Consensus        45 ~~L~l~~~--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  122 (629)
                      +.+++++.  .++ .++.++..+++|++|+|++|.++ .++  .+..+++|++|++++|.++.+++ .+..+++|++|++
T Consensus        26 ~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l  100 (198)
T d1m9la_          26 EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWI  100 (198)
T ss_dssp             SCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEEC
T ss_pred             ceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc--cccCCccccChhhcccccccccc-ccccccccccccc
Confidence            35555543  233 46677888889999999999887 665  48888889999999998877653 3445678899999


Q ss_pred             ccccCCcccCccccCCCCCCCEEEccCcccccccCCcccCCCCCCcEEECCCCcceee
Q 040607          123 SSNQLTGNISSPPLKHLKSIQELKLSNNYFQIPISLGPLYNHSNLKIFDSENNQIYAQ  180 (629)
Q Consensus       123 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  180 (629)
                      ++|.++ .++  .+..+++|++|++++|.++.......+..+++|+.|++++|++...
T Consensus       101 ~~N~i~-~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         101 SYNQIA-SLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEECC-CHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccc-ccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            999887 553  5778888999999998887322234578888999999998887544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.1e-13  Score=124.45  Aligned_cols=104  Identities=21%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             ccCCCcccEEEcccCcCCCCCCCCcCCCccccCCCccCCCeeecccccCCCCCccccccccccceEeccCcccccccc-c
Q 040607          401 FCQLNFLQILDISKKNIFGSLPSCFNPFSIKQGKPLNSMSGLDLSCNKLTGEIPLRIGNLTRIHTLNVSHNKLTGLIL-S  479 (629)
Q Consensus       401 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~  479 (629)
                      +..+++|++|++++|.+... +.....        +++|+.|++++|.++. + ..+..+++|+.|++++|+|++... .
T Consensus        66 l~~l~~L~~L~Ls~N~i~~i-~~~~~~--------~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~  134 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIKKI-ENLDAV--------ADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEID  134 (198)
T ss_dssp             HHHHTTCCEEECCEEEECSC-SSHHHH--------HHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHH
T ss_pred             ccCCccccChhhcccccccc-cccccc--------cccccccccccccccc-c-ccccccccccccccccchhccccccc
Confidence            44455555555555555322 222211        3456667777776662 2 235666777777777777765432 4


Q ss_pred             cccCCCCCCEEECcCCcCCCCCCcc----------ccCCCCCCEEE
Q 040607          480 TFSNLKQTESLDLSYNKLTGKIPPQ----------LVELNALAVFS  515 (629)
Q Consensus       480 ~~~~l~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~  515 (629)
                      .|..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       135 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            5667777777777777665333321          34566676664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.1e-09  Score=89.95  Aligned_cols=64  Identities=23%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             ccCCCeeecccccCCCCC--ccccccccccceEeccCccccccccccccCCCCCCEEECcCCcCCC
Q 040607          436 LNSMSGLDLSCNKLTGEI--PLRIGNLTRIHTLNVSHNKLTGLILSTFSNLKQTESLDLSYNKLTG  499 (629)
Q Consensus       436 ~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  499 (629)
                      +++|+.|+|++|+++...  +..+..+++|+.|+|++|.|+...+-.+.+...|++|++++|++..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            455666666666655321  2334455566666666666555443333333445556666665553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.1e-07  Score=79.58  Aligned_cols=70  Identities=24%  Similarity=0.193  Sum_probs=36.7

Q ss_pred             ccccccccceEeccCccccccc--cccccCCCCCCEEECcCCcCCCCCCccccCCCCCCEEEcccCcCcccC
Q 040607          456 RIGNLTRIHTLNVSHNKLTGLI--LSTFSNLKQTESLDLSYNKLTGKIPPQLVELNALAVFSVAHNKLSGKT  525 (629)
Q Consensus       456 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  525 (629)
                      .+..+++|++|+|++|+|+.+.  +..+..+++|+.|++++|.|+...+-.+.....|+.|++++|++.+..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            3344566666666666665442  233445566666666666665332223333345566666666665443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=1.4e-05  Score=68.11  Aligned_cols=68  Identities=18%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             CCCCCcEEEcCCC-CceeecchhhhhcCccchhcccceeeccCcccCcc----chhhhcCCCCCCEEEccCCcCC
Q 040607           10 NLTNLENLTLDNS-FFHVSLLQSIAVFGPWMVQCFIGFRAMDGTALDKN----FLQVIKSMTSLKLLSLSNSRLN   79 (629)
Q Consensus        10 ~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~   79 (629)
                      +.+.|+.|+|+++ .++......++..  ..-...+++|+|++|.+...    +...+...+.|++|+|++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~--L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEA--ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHH--HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHH--HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3566777777653 3443322222211  01112345555555554422    2223333444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=9.8e-05  Score=62.70  Aligned_cols=88  Identities=13%  Similarity=0.089  Sum_probs=45.7

Q ss_pred             CCCCCCccEEeccCCCCCcccchhh---hhCCCCCcEEEccCccccccc----CcccCCCCCCcEEEccCCcCccc----
Q 040607          280 VGNMKSLSVLDLSKNRLIGKIPERL---AMGCFSLRYLVLSNNKMKGHI----FSKKINLTNLWRLQLDGNHFIGE----  348 (629)
Q Consensus       280 ~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----  348 (629)
                      +...++|++|++++|.+.+.....+   ....+.|++|++++|.+....    ...+...++|++|++++|.+...    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            4455666666776666653211111   122456677777766665322    22344556677777766644322    


Q ss_pred             ---CchhhhccccCCceecccc
Q 040607          349 ---IPESLSNCNLFGGLYLSDN  367 (629)
Q Consensus       349 ---~~~~~~~l~~L~~L~l~~n  367 (629)
                         +...+...++|+.|+++.+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCC
Confidence               2333444556666665443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00013  Score=61.98  Aligned_cols=90  Identities=24%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             hhcCCCCCCEEEccCCcCCCccCc---cccCCCCCCcEEEccCCcCccCCC----cccCCCCCCCeeec--ccccCCc--
Q 040607           61 VIKSMTSLKLLSLSNSRLNGTILD---QGLCEFVHLQELHVDHNNLYGVPP----WCLGNMTSLQVLNI--SSNQLTG--  129 (629)
Q Consensus        61 ~l~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L--~~n~l~~--  129 (629)
                      ++...++|++|++++|.+......   ..+...+.++.+++++|.+.....    ..+...+.|+.++|  ++|.+.+  
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            334455555555555554311100   123344555555555555432211    23445556655433  3344431  


Q ss_pred             --ccCccccCCCCCCCEEEccCcc
Q 040607          130 --NISSPPLKHLKSIQELKLSNNY  151 (629)
Q Consensus       130 --~i~~~~l~~l~~L~~L~L~~n~  151 (629)
                        .+.. .+...++|++|+++.+.
T Consensus       121 ~~~La~-~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         121 EMEIAN-MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             HHHHHH-HHHhCCCcCEEeCcCCC
Confidence              1111 34455667777665553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.63  E-value=0.00081  Score=56.73  Aligned_cols=107  Identities=13%  Similarity=0.067  Sum_probs=55.5

Q ss_pred             CCCccEEEccC-CCCccccc------CCCCCCccEEeccCCCCCcccchhh---hhCCCCCcEEEccCccccccc----C
Q 040607          261 RRHLTYLDVSD-NFFQVHIP------VGNMKSLSVLDLSKNRLIGKIPERL---AMGCFSLRYLVLSNNKMKGHI----F  326 (629)
Q Consensus       261 ~~~L~~L~L~~-n~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~----~  326 (629)
                      .+.|++|++++ +.++...-      +...++|++|++++|.++......+   ....+.++.+++++|.+....    .
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            34555566654 23332111      4456677777777776653322221   123566777777777664322    2


Q ss_pred             cccCCCCCCcEEEcc--CCcCccc----CchhhhccccCCceecccc
Q 040607          327 SKKINLTNLWRLQLD--GNHFIGE----IPESLSNCNLFGGLYLSDN  367 (629)
Q Consensus       327 ~~~~~l~~L~~L~l~--~n~l~~~----~~~~~~~l~~L~~L~l~~n  367 (629)
                      ..+...++|+.++++  +|.+...    +...+...++|+.|+++.+
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            344455667665443  4444321    2344555666666666544