Citrus Sinensis ID: 040623

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
IIVIIIIIIIIVADCGRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSIKAKL
cEEEEEHHHHHHHcccccccccccccccccccEEEcccEEEEccccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHHHHcEEEEcccccccHHHHHHHHHccccccccHHHHHHHccEEEEEcEEEcccccccccccccEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHcccccccccEEEcccccEEEEEcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccc
ccEEEEEEEEEEccccHHHHHHHHHHHHHHccEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccc
IIVIIIIIIIIVADcgresgvrkrgreMEFQKIkvanpivemdgdEMTRVIWKLIKDKLinpfleldikyfdlglpnrdatddQVTIQSAQATLKYNVAIkcatitpdevrvkefnlkrmwkspngtirnilngtvfrepiickniprlvsgwtkpicigrhafgdqyratdaviqgpgklklvfvpdglnqkteWEVYSFTGAGGVALSMYNTDESICSFAEASMNtayqkkwplylSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGgyvwacknydgdvqsdFLAQGFGSLGLMTSvlvcpdgktieaeaahgtvtrhyrvhqkggetstnSIASIFAWSQGLAHRakldgnprlldFTEKLEAACIATVESGKMTKDLALLihgpqvarpqylntEEFIDAVTETLKERMSIKAKL
IIVIIIIIiiivadcgresgvrkrgremefqkikvanpivemdgdEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKcatitpdevrvkefnlkrmwkspngtirnilngtvfrepiiCKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYrvhqkggetstNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPqvarpqylntEEFIDAVTETLKERMSIKAKL
iiviiiiiiiivADCGRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSIKAKL
*IVIIIIIIIIVADCGRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVT*************
IIVIIIIIIIIVAD******************IKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG*ETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMS*****
IIVIIIIIIIIVADCGRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLK*********
IIVIIIIIIIIVADCGRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSI****
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IIVIIIIIIIIVADCGRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSIKAKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
P50218415 Isocitrate dehydrogenase N/A no 0.934 0.997 0.872 0.0
P50217416 Isocitrate dehydrogenase N/A no 0.934 0.995 0.865 0.0
Q06197413 Isocitrate dehydrogenase no no 0.923 0.990 0.860 0.0
Q40345433 Isocitrate dehydrogenase N/A no 0.927 0.949 0.854 0.0
P33198421 Isocitrate dehydrogenase yes no 0.927 0.976 0.693 1e-171
Q4R502452 Isocitrate dehydrogenase N/A no 0.918 0.900 0.697 1e-170
Q9Z2K9414 Isocitrate dehydrogenase N/A no 0.911 0.975 0.694 1e-170
P48735452 Isocitrate dehydrogenase yes no 0.918 0.900 0.697 1e-170
Q04467452 Isocitrate dehydrogenase yes no 0.918 0.900 0.695 1e-170
P54071452 Isocitrate dehydrogenase yes no 0.918 0.900 0.695 1e-170
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/415 (87%), Positives = 385/415 (92%), Gaps = 1/415 (0%)

Query: 28  MEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTI 87
           M F KIKV NPIVEMDGDEMTRVIWK IKDKLI PFLELDIKYFDLGLP+RDATDD+VT+
Sbjct: 1   MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTV 60

Query: 88  QSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIP 147
           +SA+AT KYNVAIKCATITPDE RVKEFNLK MW+SPNGTIRNILNGTVFREPI+CKNIP
Sbjct: 61  ESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIP 120

Query: 148 RLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGV 207
           RLV GWTKPICIGRHAFGDQYRATD VIQG GKLKLVFVP+G ++KTE+EVY+FTGAGGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGV 180

Query: 208 ALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267
           ALSMYNTDES+ SFAEASMN AYQKKWPLYLSTKNTILK YDGRFKDIFQEVYEA WKSK
Sbjct: 181 ALSMYNTDESVRSFAEASMNMAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240

Query: 268 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 327
           +E AGIWYEHRLIDDM AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 YEEAGIWYEHRLIDDMAAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 328 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEK 387
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW++GLAHRA LD N RLLDFTEK
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEK 360

Query: 388 LEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSIKAK 442
           LEAACI  VESGKMTKDLAL+IHG +++R  YLNTEEFIDAV + LK R+ +KAK
Sbjct: 361 LEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL-LKAK 414
May supply 2-oxoglutarate for amino acid biosynthesis and ammonia assimilation.
Nicotiana tabacum (taxid: 4097)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
224109128416 predicted protein [Populus trichocarpa] 0.939 1.0 0.899 0.0
224101287416 predicted protein [Populus trichocarpa] 0.939 1.0 0.896 0.0
255572548416 NADP-specific isocitrate dehydrogenase, 0.939 1.0 0.882 0.0
255575226413 NADP-specific isocitrate dehydrogenase, 0.927 0.995 0.900 0.0
224079726414 predicted protein [Populus trichocarpa] 0.934 1.0 0.888 0.0
5764653414 NADP-isocitrate dehydrogenase [Citrus li 0.934 1.0 0.888 0.0
225462342416 PREDICTED: isocitrate dehydrogenase [NAD 0.939 1.0 0.877 0.0
224135233414 predicted protein [Populus trichocarpa] 0.934 1.0 0.886 0.0
269994009416 NADP-dependent isocitrate dehydrogenase 0.939 1.0 0.877 0.0
1750380416 NADP-isocitrate dehydrogenase [Eucalyptu 0.939 1.0 0.879 0.0
>gi|224109128|ref|XP_002315093.1| predicted protein [Populus trichocarpa] gi|222864133|gb|EEF01264.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/416 (89%), Positives = 392/416 (94%)

Query: 28  MEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTI 87
           M F KIKV NPIVEMDGDEMTRVIWK IKDKLI PFL+LDIKYFDLGLPNRDATDD+VT+
Sbjct: 1   MAFDKIKVTNPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDRVTV 60

Query: 88  QSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIP 147
           +SA+ATLKYNVAIKCATITPDE RVKEFNLK MWKSPNGTIRNILNGTVFREPIICKNIP
Sbjct: 61  ESAEATLKYNVAIKCATITPDEGRVKEFNLKNMWKSPNGTIRNILNGTVFREPIICKNIP 120

Query: 148 RLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGV 207
           RLVSGWTKPICIGRHAFGDQYRATD VIQGPGKLKLVFVPDG N+KTE+EV+ F GAGGV
Sbjct: 121 RLVSGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPDGHNEKTEFEVFKFKGAGGV 180

Query: 208 ALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267
           ALSMYNTDESI +FAEASMNTAY KKWPLYLSTKNTILK YDGRFKDIFQEVYE QWKSK
Sbjct: 181 ALSMYNTDESIQAFAEASMNTAYLKKWPLYLSTKNTILKKYDGRFKDIFQEVYETQWKSK 240

Query: 268 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 327
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 328 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEK 387
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS GLAHRAKLDGN +L+DFT K
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSSGLAHRAKLDGNVKLMDFTAK 360

Query: 388 LEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERMSIKAKL 443
           LEA+CI  VESGKMTKDLALLIHGP+V+R Q+LNTEEFIDAV E L+ R+S+KAKL
Sbjct: 361 LEASCIGAVESGKMTKDLALLIHGPRVSRSQFLNTEEFIDAVAEELRARLSVKAKL 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101287|ref|XP_002312216.1| predicted protein [Populus trichocarpa] gi|222852036|gb|EEE89583.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255572548|ref|XP_002527208.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223533426|gb|EEF35175.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255575226|ref|XP_002528517.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223532077|gb|EEF33886.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224079726|ref|XP_002305928.1| predicted protein [Populus trichocarpa] gi|222848892|gb|EEE86439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|5764653|gb|AAD51361.1|AF176669_1 NADP-isocitrate dehydrogenase [Citrus limon] Back     alignment and taxonomy information
>gi|225462342|ref|XP_002268982.1| PREDICTED: isocitrate dehydrogenase [NADP] [Vitis vinifera] gi|297736086|emb|CBI24124.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135233|ref|XP_002327598.1| predicted protein [Populus trichocarpa] gi|222836152|gb|EEE74573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|269994009|dbj|BAI50641.1| NADP-dependent isocitrate dehydrogenase [Eucalyptus grandis x Eucalyptus urophylla] Back     alignment and taxonomy information
>gi|1750380|gb|AAB39248.1| NADP-isocitrate dehydrogenase [Eucalyptus globulus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.923 0.983 0.853 4e-193
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.923 0.997 0.849 8.3e-193
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.941 0.859 0.765 6.1e-174
UNIPROTKB|P33198421 IDH2 "Isocitrate dehydrogenase 0.925 0.973 0.698 2.4e-156
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.905 0.970 0.709 4.9e-156
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.914 0.959 0.7 8e-156
ZFIN|ZDB-GENE-031118-95449 idh2 "isocitrate dehydrogenase 0.914 0.902 0.7 1.3e-155
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.905 0.887 0.709 1.7e-155
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.905 0.887 0.709 1.7e-155
UNIPROTKB|Q04467452 IDH2 "Isocitrate dehydrogenase 0.905 0.887 0.706 2.7e-155
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1871 (663.7 bits), Expect = 4.0e-193, P = 4.0e-193
 Identities = 350/410 (85%), Positives = 380/410 (92%)

Query:    28 MEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTI 87
             MEF+KIKV NP+VEMDGDEMTRVIWK IKDKLI PFLELDIKYFDLGLPNRD TDD+VTI
Sbjct:     1 MEFEKIKVINPVVEMDGDEMTRVIWKFIKDKLIFPFLELDIKYFDLGLPNRDFTDDKVTI 60

Query:    88 QSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIP 147
             ++A+ATLKYNVAIKCATITPDE RV+EF LK+MW+SPNGTIRNILNGTVFREPIIC+NIP
Sbjct:    61 ETAEATLKYNVAIKCATITPDEARVREFGLKKMWRSPNGTIRNILNGTVFREPIICRNIP 120

Query:   148 RLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGV 207
             RLV GWTKPICIGRHAFGDQYRATD ++  PGKLKLVF P G +QKTE+EV++FTG GGV
Sbjct:   121 RLVPGWTKPICIGRHAFGDQYRATDLIVNEPGKLKLVFEPSGSSQKTEFEVFNFTG-GGV 179

Query:   208 ALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267
             AL+MYNTDESI +FAE+SM TAYQKKWPLYLSTKNTILK YDGRFKDIFQEVYEA W+SK
Sbjct:   180 ALAMYNTDESIRAFAESSMYTAYQKKWPLYLSTKNTILKIYDGRFKDIFQEVYEANWRSK 239

Query:   268 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 327
             +EAAGIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDFLAQG+GSLG+MTSVLVCP
Sbjct:   240 YEAAGIWYEHRLIDDMVAYAMKSEGGYVWACKNYDGDVQSDFLAQGYGSLGMMTSVLVCP 299

Query:   328 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEK 387
             DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS+GLAHRAKLD N  LL +TEK
Sbjct:   300 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDSNAALLSYTEK 359

Query:   388 LEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERM 437
             LEAAC+ TVESGKMTKDLALLIHG +V R QY+NTEEFIDAV   LK R+
Sbjct:   360 LEAACMGTVESGKMTKDLALLIHGAKVRRDQYVNTEEFIDAVAWELKRRL 409
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS
GO:0006102 "isocitrate metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-95 idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.69750.91870.9004N/Ano
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.69510.91870.9004yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.65840.90970.9853yesno
Q75JR3IDHC_DICDI1, ., 1, ., 1, ., 4, 20.65360.91640.9854yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.65840.90970.9853yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.69750.91870.9004yesno
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.86060.92320.9903nono
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.69510.91870.9004yesno
P41939IDHC_YEAST1, ., 1, ., 1, ., 4, 20.63260.92090.9902yesno
O13294IDH2_CANTR1, ., 1, ., 1, ., 4, 20.64630.91640.9878N/Ano
Q6XUZ5IDHC_SHEEP1, ., 1, ., 1, ., 4, 20.68470.91190.9758N/Ano
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.69320.92770.9762yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.85400.92770.9491N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.86530.93450.9951N/Ano
P50215IDH_SPHYA1, ., 1, ., 1, ., 4, 20.64460.90290.9852N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.87220.93450.9975N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.69450.91190.9758N/Ano
Q9Z2K8IDHC_MICOH1, ., 1, ., 1, ., 4, 20.69210.91190.9758N/Ano
O13285IDH1_CANTR1, ., 1, ., 1, ., 4, 20.65920.90510.9325N/Ano
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.69260.91870.9004yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.63460.95030.9589yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
4th Layer1.1.1.420.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-161
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 1e-97
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 2e-51
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 6e-06
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 1e-04
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 2e-04
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 4e-04
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 0.001
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  895 bits (2314), Expect = 0.0
 Identities = 376/410 (91%), Positives = 394/410 (96%)

Query: 28  MEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTI 87
           M F+KIKVANPIVEMDGDEMTRVIWK IKDKLI PFL+LDIKYFDLGLPNRDATDD+VT+
Sbjct: 1   MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTV 60

Query: 88  QSAQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIP 147
           +SA+ATLKYNVAIKCATITPDE RVKEF LK+MWKSPNGTIRNILNGTVFREPIICKNIP
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIP 120

Query: 148 RLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGV 207
           RLV GWTKPICIGRHAFGDQYRATDAVI+GPGKLKLVFVP+G ++KTE EVY+FTGAGGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKTELEVYNFTGAGGV 180

Query: 208 ALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSK 267
           ALSMYNTDESI +FAEASMNTAYQKKWPLYLSTKNTILK YDGRFKDIFQEVYEAQWKSK
Sbjct: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSK 240

Query: 268 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 327
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 328 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEK 387
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWS+GLAHRAKLDGN RLLDFTEK
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEK 360

Query: 388 LEAACIATVESGKMTKDLALLIHGPQVARPQYLNTEEFIDAVTETLKERM 437
           LEAAC+ TVESGKMTKDLALLIHGP+V+R QYLNTEEFIDAV E LK R+
Sbjct: 361 LEAACVGTVESGKMTKDLALLIHGPKVSRDQYLNTEEFIDAVAEELKARL 410

Length = 410
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 97.18
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 96.35
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 94.44
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 90.86
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 89.22
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 89.11
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 88.87
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 88.41
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 88.22
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 88.04
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 87.97
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 87.81
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 87.65
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
Probab=100.00  E-value=5e-111  Score=870.81  Aligned_cols=424  Identities=78%  Similarity=1.236  Sum_probs=391.6

Q ss_pred             CccccccccccccccccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHh
Q 040623           16 GRESGVRKRGREMEFQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLK   95 (443)
Q Consensus        16 ~~~~~~~~~~~~~~~~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~   95 (443)
                      -|+|++|.-...++|+||+|.+||++|+|||||+|||+.++++|+.++++++|+++|+|.+++++||+++|+|+++++|+
T Consensus        57 ~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk  136 (483)
T PLN03065         57 HRASSVRCFASAAAADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLK  136 (483)
T ss_pred             ccccchhhhcchhhhccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHH
Confidence            47788887766677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEEecccCCCcchhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEE
Q 040623           96 YNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVI  175 (443)
Q Consensus        96 ~da~LkG~v~tp~~~~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vi  175 (443)
                      +||+||||++||..++++++++++.|+|||++||+.||||+|+|||.|+|+|+++|||++||+++|||++|.|+++|+++
T Consensus       137 ~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi  216 (483)
T PLN03065        137 YNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVI  216 (483)
T ss_pred             cCEEEECcccCCccccccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEE
Confidence            99999999999987666677788899999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceeEEEEeCCCCCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHH
Q 040623          176 QGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDI  255 (443)
Q Consensus       176 vrent~e~~y~~~~g~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~  255 (443)
                      +.+++++.+|.+|+|++..++.+.++.+ ++++.++++|+++++||+|+||+||++|+++||++||+||||.+||+|+++
T Consensus       217 ~~~g~~~~~~~rEnte~~~e~~v~~f~~-~gva~~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~di  295 (483)
T PLN03065        217 KGPGKLKMVFVPEDGNAPVELDVYDFKG-PGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDI  295 (483)
T ss_pred             ecCCeeEEEeecCCCCCcceeEeeccCC-CCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHH
Confidence            9999999999999998765555445554 678877899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCccccCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEe
Q 040623          256 FQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAE  335 (443)
Q Consensus       256 ~~ev~a~eyp~~f~~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FE  335 (443)
                      |+|||.++|..+|++.+|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++..++||
T Consensus       296 f~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fE  375 (483)
T PLN03065        296 FQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAE  375 (483)
T ss_pred             HHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhCCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEe
Confidence            99998778888888889999999999999999999999999999999999999999999999999999999997447999


Q ss_pred             cccccccccchhhcCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCC
Q 040623          336 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVA  415 (443)
Q Consensus       336 p~HGSApdi~~~~iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~  415 (443)
                      |+||||||||+.|++||+++|||+|+|+|++|||+|+|++++++.|.++|++|++||.+++++|.+|+|||.+.+|..+.
T Consensus       376 a~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~  455 (483)
T PLN03065        376 AAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVS  455 (483)
T ss_pred             cCcCcCccccchhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCccc
Confidence            99999999999999999966999999999999999999999999999999999999999999999999997433342222


Q ss_pred             CCCccCHHHHHHHHHHHHHHHhhhh
Q 040623          416 RPQYLNTEEFIDAVTETLKERMSIK  440 (443)
Q Consensus       416 ~~~~~sT~e~~daV~~~l~~~~~~~  440 (443)
                      ++..++|+||+|+|+++|+..+...
T Consensus       456 ~~~~~~T~ef~daV~~~L~~~~~~~  480 (483)
T PLN03065        456 REFYLNTEEFIDAVAQTLATKRGEP  480 (483)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhccC
Confidence            3446999999999999998876543

>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-172
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-168
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-168
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-167
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-167
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-167
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-161
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-159
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-153
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-129
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-121
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 1e-108
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 3e-04
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 8e-04
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  600 bits (1546), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 285/405 (70%), Positives = 324/405 (80%), Gaps = 3/405 (0%)
Query: 31  QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSA 90
           Q+IKVA P+VEMDGDEMTR+IW+ IK+KLI P +++ +KYFDLGLPNRD T+DQVTI SA
Sbjct: 3   QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSA 62
Query: 91  QATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLV 150
            AT KY+VA+KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFREPIICKNIPRLV
Sbjct: 63  LATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLV 122
Query: 151 SGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALS 210
            GWTKPI IGRHA GDQY+ATD V+   G  K+VF P   +   +WEVY+F  AGGV + 
Sbjct: 123 PGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMG 181
Query: 211 MYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA 270
           MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E  +K+ F+ 
Sbjct: 182 MYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK 241
Query: 271 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 330
             IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGK
Sbjct: 242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGK 301
Query: 331 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEA 390
           TIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW++GL HR KLDGN  L+ F + LE 
Sbjct: 302 TIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEK 361
Query: 391 ACIATVESGKMTKDLALLIHGPQVAR--PQYLNTEEFIDAVTETL 433
            C+ TVESG MTKDLA  IHG    +    +LNT +F+D +   L
Sbjct: 362 VCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 0.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 0.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 0.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 0.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 0.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 0.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 5e-20
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 9e-19
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 5e-04
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 2e-10
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 5e-10
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 8e-10
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-09
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 2e-09
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 4e-09
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 6e-09
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 3e-08
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 4e-08
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 5e-08
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 5e-05
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  577 bits (1487), Expect = 0.0
 Identities = 284/413 (68%), Positives = 324/413 (78%), Gaps = 3/413 (0%)

Query: 30  FQKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQS 89
            Q+IKVA P+VEMDGDEMTR+IW+ IK+KLI P +++ +KYFDLGLPNRD T+DQVTI S
Sbjct: 2   DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDS 61

Query: 90  AQATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRL 149
           A AT KY+VA+KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFREPIICKNIPRL
Sbjct: 62  ALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRL 121

Query: 150 VSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVAL 209
           V GWTKPI IGRHA GDQY+ATD V+   G  K+VF P   +   +WEVY+F   GGV +
Sbjct: 122 VPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGM 180

Query: 210 SMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFE 269
            MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E  +K+ F+
Sbjct: 181 GMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 240

Query: 270 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 329
              IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDG
Sbjct: 241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDG 300

Query: 330 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLE 389
           KTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW++GL HR KLDGN  L+ F + LE
Sbjct: 301 KTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLE 360

Query: 390 AACIATVESGKMTKDLALLIHGPQ--VARPQYLNTEEFIDAVTETLKERMSIK 440
             C+ TVESG MTKDLA  IHG         +LNT +F+D +   L   +  +
Sbjct: 361 KVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 413
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 97.1
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 97.05
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 90.16
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 89.87
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 89.74
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 89.59
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 87.38
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 82.69
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
Probab=100.00  E-value=7.1e-114  Score=890.96  Aligned_cols=409  Identities=70%  Similarity=1.168  Sum_probs=366.2

Q ss_pred             ccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcc
Q 040623           31 QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEV  110 (443)
Q Consensus        31 ~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~  110 (443)
                      +||+|.+||++|||||||||||++++++|..++++|+|+++++|++++++||+++|++++++|+++|++||||++||.+.
T Consensus         3 ~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~   82 (413)
T 1lwd_A            3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA   82 (413)
T ss_dssp             CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred             CcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence            68999999999999999999999999999988999999999999999999999999999999999999999999999865


Q ss_pred             hhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623          111 RVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL  190 (443)
Q Consensus       111 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g  190 (443)
                      .+|++.+.++|+|+|++||++||||+|+||+.|+++|+++|+++.|++++||||++.|.++|++++|||+.++.|.++.|
T Consensus        83 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g  162 (413)
T 1lwd_A           83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG  162 (413)
T ss_dssp             HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred             cCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence            56543344578999999999999999999998889998889999999999999999999999999999987888998766


Q ss_pred             CCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccCcccc
Q 040623          191 NQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEA  270 (443)
Q Consensus       191 ~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~~f~~  270 (443)
                      +++.......++. .+++++.++|+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||+++||++|.+
T Consensus       163 ~~~~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~  241 (413)
T 1lwd_A          163 SSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK  241 (413)
T ss_dssp             CCCEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccccccccccCC-CcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccC
Confidence            4322222222222 345577899999999999999999999988999999999999999999999999954799988888


Q ss_pred             CCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchhhcC
Q 040623          271 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK  350 (443)
Q Consensus       271 ~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~~iA  350 (443)
                      .+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+|||||||+++++|
T Consensus       242 ~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~~a  321 (413)
T 1lwd_A          242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQK  321 (413)
T ss_dssp             TTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHT
T ss_pred             CeEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhhhc
Confidence            88999999999999999999999999999999999999999999999999999999987448999999999999999999


Q ss_pred             CCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccC-CCCC-CCCccCHHHHHHH
Q 040623          351 GGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHG-PQVA-RPQYLNTEEFIDA  428 (443)
Q Consensus       351 Gk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G-~~~~-~~~~~sT~e~~da  428 (443)
                      ||+++|||+|+|||++|||+|+|+.+.++++.++|++|++||.+++++|++|+|||++..| +++. .++.++|+||+|+
T Consensus       322 Gk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~da  401 (413)
T 1lwd_A          322 GRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDT  401 (413)
T ss_dssp             TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHH
T ss_pred             CCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcCCcCcccccccCCcccccccCCCCCHHHHHHH
Confidence            9996699999999999999999998888889999999999999999999999999732213 1111 1136899999999


Q ss_pred             HHHHHHHHhhhh
Q 040623          429 VTETLKERMSIK  440 (443)
Q Consensus       429 V~~~l~~~~~~~  440 (443)
                      |+++|++.|.+|
T Consensus       402 V~~~l~~~~~~~  413 (413)
T 1lwd_A          402 IKSNLDRALGRQ  413 (413)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHhhcC
Confidence            999998888776
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-137
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-136
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 2e-41
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 2e-36
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 6e-33
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 6e-28
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-27
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 2e-26
d1itwa_740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 4e-24
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-23
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 9e-12
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  398 bits (1022), Expect = e-137
 Identities = 280/413 (67%), Positives = 331/413 (80%), Gaps = 2/413 (0%)

Query: 32  KIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQ 91
           K      +VEM GDEMTR+IW+LIK+KLI P++ELD+  +DLG+ NRDAT+DQVT  +A+
Sbjct: 3   KKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAE 62

Query: 92  ATLKYNVAIKCATITPDEVRVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVS 151
           A  K+NV +KCATITPDE RV+EF LK+MWKSPNGTIRNIL GTVFRE IICKNIPRLVS
Sbjct: 63  AIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVS 122

Query: 152 GWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGLNQKTEWEVYSFTGAGGVALSM 211
           GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    QK  + V++F   GGVA+ M
Sbjct: 123 GWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGM 182

Query: 212 YNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKSKFEAA 271
           YN D+SI  FA +S   A  K WPLYLSTKNTILK YDGRFKDIFQE+Y+ Q+KS+FEA 
Sbjct: 183 YNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQ 242

Query: 272 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT 331
            IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT
Sbjct: 243 KIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKT 302

Query: 332 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAA 391
           +EAEAAHGTVTRHYR++QKG ETSTN IASIFAW++GLAHRAKLD N  L  F   LE  
Sbjct: 303 VEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEV 362

Query: 392 CIATVESGKMTKDLALLIHG-PQVARPQYLNTEEFIDAVTETLKERMSIKAKL 443
            I T+E+G MTKDLA  I G P V R  YLNT EF+D + E LK +++ +AKL
Sbjct: 363 SIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLA-QAKL 414
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.84
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 94.75
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 85.95
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.3e-98  Score=775.28  Aligned_cols=407  Identities=67%  Similarity=1.086  Sum_probs=352.4

Q ss_pred             ccccccccEEEECCCcchHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCcccHHHHHHHHhcCeEEEecccCCCcc
Q 040623           31 QKIKVANPIVEMDGDEMTRVIWKLIKDKLINPFLELDIKYFDLGLPNRDATDDQVTIQSAQATLKYNVAIKCATITPDEV  110 (443)
Q Consensus        31 ~ki~~~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkG~v~tp~~~  110 (443)
                      +||+|++||++|||||||+++|+.+++.+..++++++|+++|+|.++|++||+++|+|++++||++|++||||++||.++
T Consensus         3 ~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~~~   82 (413)
T d1lwda_           3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA   82 (413)
T ss_dssp             CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred             CcccccCCEEEecCccHHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCCcc
Confidence            68999999999999999999999999989889999999999999999999999999999999999999999999999877


Q ss_pred             hhhhhhhhccCCCcchhhhhhcCceEEeeecccccCCcccCCCCCceeeeecccCCCCCCccEEEecCCceeEEEEeCCC
Q 040623          111 RVKEFNLKRMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIQGPGKLKLVFVPDGL  190 (443)
Q Consensus       111 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~ip~~~~g~~~pl~~~R~~~~d~~~~id~vivrent~e~~y~~~~g  190 (443)
                      +.+.......++|+|+.||++||||+|+||+++.+.++..+++..|+++.||||+|.|.++++.+.++.+....+..+.+
T Consensus        83 ~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~~g  162 (413)
T d1lwda_          83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG  162 (413)
T ss_dssp             HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred             ccccccccccccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEecccc
Confidence            66555556678999999999999999999986655555555667889999999999999999988888763333444433


Q ss_pred             CCcceeeeeeecCCcceEEEEeecHHHHHHHHHHHHHHHHhCCCCEEEEeCCccccccchHHHHHHHHHHHhhccC-ccc
Q 040623          191 NQKTEWEVYSFTGAGGVALSMYNTDESICSFAEASMNTAYQKKWPLYLSTKNTILKNYDGRFKDIFQEVYEAQWKS-KFE  269 (443)
Q Consensus       191 ~~~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvl~~tdglf~~~~~ev~a~eyp~-~f~  269 (443)
                      ... .........+...+.+.++|+.+++||+|+||++|++++++||++||+|||+.++|+|+++|++| +++||+ ++.
T Consensus       163 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~ev-a~~~p~~~~~  240 (413)
T d1lwda_         163 SSA-KQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEI-FEKHYKTDFD  240 (413)
T ss_dssp             CCC-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHH-HHHHTHHHHH
T ss_pred             ccc-cccccccccccccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHH-HHHhcccccc
Confidence            321 11111111213445779999999999999999999999889999999999999999999999999 566663 555


Q ss_pred             cCCeEEeeeehhHHHHHHhhCCCceEEEecCCcccchhhhhhhhcCCcccccceeeCCCCceEEEecccccccccchh-h
Q 040623          270 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV-H  348 (443)
Q Consensus       270 ~~~I~~~~~~VDa~~~~Lv~~P~~FViv~~NlfGDIlSDlaA~l~GglGlapSanig~~~~~a~FEp~HGSApdi~~~-~  348 (443)
                      +.+|+++++++|+++|+|+++|+.|||||+|||||||||++|+++|||||+||+|+|+++..++|||+|||||||+.+ +
T Consensus       241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~  320 (413)
T d1lwda_         241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ  320 (413)
T ss_dssp             HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred             ccEEEEehhhhhhhhhhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCCcccccCCCccccccccccccchhhcchhh
Confidence            557999999999999999999997799999999999999999999999999999999986557899999999999876 7


Q ss_pred             cCCCCcccChhhHHHHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHhcCCcccchhhhccCCCCC--CCCccCHHHHH
Q 040623          349 QKGGETSTNSIASIFAWSQGLAHRAKLDGNPRLLDFTEKLEAACIATVESGKMTKDLALLIHGPQVA--RPQYLNTEEFI  426 (443)
Q Consensus       349 iAGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~--~~~~~sT~e~~  426 (443)
                      ++||++ |||+|||||++|||+|||+.+.+++|.++|++|++||.+++++|++|+|||+...|.++.  ..+.+||+||+
T Consensus       321 iagk~i-ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~  399 (413)
T d1lwda_         321 KGRPTS-TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFL  399 (413)
T ss_dssp             TTCCCC-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHH
T ss_pred             cCCccc-cChHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHCCCCCcccCCCccccccccccCCccCHHHHH
Confidence            899999 999999999999999999998888899999999999999999999999999543232111  23457999999


Q ss_pred             HHHHHHHHHHhhhh
Q 040623          427 DAVTETLKERMSIK  440 (443)
Q Consensus       427 daV~~~l~~~~~~~  440 (443)
                      |+|+++|+++|.+|
T Consensus       400 daV~~~L~~~l~~~  413 (413)
T d1lwda_         400 DTIKSNLDRALGRQ  413 (413)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHccC
Confidence            99999999999876
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure