Citrus Sinensis ID: 040627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP
cEEEEccccHHHHHHHHHHHHccccEEccccccccccHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccEEEEEEEEcccHHHHHccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEEEEccEEEEEEEEEcccccccccccccEEEEEEEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHHcc
cEEEEccccHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHcccEEEcHHHcccccccHHHHHHHHHHcccEEEEEHHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHcccccccccEEEEEccccHHccccccHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEEEEccEEEEEEEEcccccccHcccccccEEEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcc
lafvdcsassETVEILTQAVDLGCCIvlankkpltstkedydklvsrprriryestvgaglpVIASLNRilssgdpvhrIVGSLSGTLGYVMsevedgkpLSQVVKAAKslgytepdprddlsgMDVARKALILARLLGMRInidsikieslypeemgpnimSVEDFLstglplldndigERVRKASLNGNVLRYVCVIegsrctvgiqelpknsplgrlrgsdNVLEIYSRcyseqplviqgagagndttaAGVLADILDIQDLFP
lafvdcsassETVEILTQAVDLGCCIVlankkpltstkedydklvsrprriryestvgaglpvIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKslgytepdprddlsgmDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVrkaslngnvLRYVCVIEGSrctvgiqelpknsplgrlrgSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP
LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQgagagndttaagVLADILDIQDLFP
**********ETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEV*****************************MDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQD***
LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP
**********ETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP
LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP
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LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
P27725819 Bifunctional aspartokinas N/A no 0.955 0.311 0.425 1e-50
Q89AR4816 Bifunctional aspartokinas yes no 0.962 0.314 0.412 2e-49
P44505815 Bifunctional aspartokinas yes no 0.958 0.314 0.400 5e-49
P00561820 Bifunctional aspartokinas N/A no 0.951 0.309 0.433 9e-49
P37142921 Bifunctional aspartokinas N/A no 0.955 0.276 0.414 5e-48
Q8K9U9814 Bifunctional aspartokinas yes no 0.962 0.315 0.405 3e-47
P49080917 Bifunctional aspartokinas N/A no 0.958 0.279 0.390 2e-46
Q9SA18911 Bifunctional aspartokinas no no 0.955 0.279 0.380 2e-46
P49079920 Bifunctional aspartokinas N/A no 0.958 0.278 0.390 2e-46
O81852916 Bifunctional aspartokinas no no 0.955 0.278 0.399 1e-45
>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1 Back     alignment and function desciption
 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 157/261 (60%), Gaps = 6/261 (2%)

Query: 4   VDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKL----VSRPRRIRYESTVGA 59
           VDC++S    +     +  G  +V  NKK  TS+   Y +L        R+  Y++ VGA
Sbjct: 552 VDCTSSQAVADQYVDFLADGFHVVTPNKKANTSSMNYYQQLRAAAAGSHRKFLYDTNVGA 611

Query: 60  GLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPR 119
           GLPVI +L  +L++GD + R  G LSG+L ++  ++++G  LS     A++ GYTEPDPR
Sbjct: 612 GLPVIENLQNLLNAGDELVRFSGILSGSLSFIFGKLDEGLSLSAATLQARANGYTEPDPR 671

Query: 120 DDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDI 179
           DDLSGMDVARK LILAR  G ++ +  I++E + P     +   V+ FL+  LP LD + 
Sbjct: 672 DDLSGMDVARKLLILAREAGYKLELSDIEVEPVLPPSFDAS-GDVDTFLAR-LPELDKEF 729

Query: 180 GERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPL 239
              V  A+  G VLRYV +I+  RC V I+ +  N PL +++  +N L  YSR Y   PL
Sbjct: 730 ARNVANAAEQGKVLRYVGLIDEGRCKVRIEAVDGNDPLYKVKNGENALAFYSRYYQPLPL 789

Query: 240 VIQGAGAGNDTTAAGVLADIL 260
           V++G GAGND TAAGV AD+L
Sbjct: 790 VLRGYGAGNDVTAAGVFADLL 810

Serratia marcescens (taxid: 615)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3
>sp|Q89AR4|AKH_BUCBP Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=thrA PE=3 SV=1 Back     alignment and function description
>sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrA PE=3 SV=1 Back     alignment and function description
>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2 Back     alignment and function description
>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1 Back     alignment and function description
>sp|Q8K9U9|AKH_BUCAP Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=thrA PE=3 SV=1 Back     alignment and function description
>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1 Back     alignment and function description
>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1 Back     alignment and function description
>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
224132262 376 predicted protein [Populus trichocarpa] 1.0 0.710 0.865 1e-132
255561228 376 aspartate kinase, putative [Ricinus comm 1.0 0.710 0.880 1e-132
351724595 376 homoserine dehydrogenase [Glycine max] g 1.0 0.710 0.831 1e-126
255638688 376 unknown [Glycine max] 1.0 0.710 0.827 1e-126
357462065 376 Bifunctional aspartokinase/homoserine de 1.0 0.710 0.823 1e-125
225436033 377 PREDICTED: bifunctional aspartokinase/ho 0.996 0.705 0.834 1e-125
297812293 376 homoserine dehydrogenase family protein 0.996 0.707 0.819 1e-122
79328303 378 glyceraldehyde-3-phosphate dehydrogenase 0.996 0.703 0.815 1e-120
15242147 376 glyceraldehyde-3-phosphate dehydrogenase 0.996 0.707 0.815 1e-120
79328311 378 glyceraldehyde-3-phosphate dehydrogenase 0.996 0.703 0.812 1e-120
>gi|224132262|ref|XP_002328225.1| predicted protein [Populus trichocarpa] gi|222837740|gb|EEE76105.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/267 (86%), Positives = 253/267 (94%)

Query: 1   LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAG 60
           LAFVDCSASSET+ +L Q VD+GCC+VLANKKPLTST EDYDKLVS PRRIR+ESTVGAG
Sbjct: 110 LAFVDCSASSETIRMLNQVVDMGCCVVLANKKPLTSTMEDYDKLVSYPRRIRHESTVGAG 169

Query: 61  LPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRD 120
           LPVIASLNR+LSSGDPVHRI+GSLSGTLGYVMSEVEDGKP S+VVK AK+LG+TEPDPRD
Sbjct: 170 LPVIASLNRLLSSGDPVHRIIGSLSGTLGYVMSEVEDGKPFSEVVKVAKNLGFTEPDPRD 229

Query: 121 DLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIG 180
           DLSGMDVARKALILARLLG RIN+DSIKIESLYP+EMGP+ MSVE+FL +G+  LDND+ 
Sbjct: 230 DLSGMDVARKALILARLLGRRINLDSIKIESLYPDEMGPDAMSVEEFLGSGIVSLDNDVQ 289

Query: 181 ERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLV 240
           ERV++ASLNGNVLRYVCVIEGSRC VGIQELPK+SPLGRLRGSDNVLEIYSRCY++QPLV
Sbjct: 290 ERVKRASLNGNVLRYVCVIEGSRCEVGIQELPKDSPLGRLRGSDNVLEIYSRCYNKQPLV 349

Query: 241 IQGAGAGNDTTAAGVLADILDIQDLFP 267
           IQGAGAGNDTTAAGVLADILDIQDLFP
Sbjct: 350 IQGAGAGNDTTAAGVLADILDIQDLFP 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561228|ref|XP_002521625.1| aspartate kinase, putative [Ricinus communis] gi|223539137|gb|EEF40732.1| aspartate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351724595|ref|NP_001237063.1| homoserine dehydrogenase [Glycine max] gi|74058450|gb|AAZ98830.1| homoserine dehydrogenase [Glycine max] gi|110617765|gb|ABG78600.1| homoserine dehydrogenase [Glycine max] Back     alignment and taxonomy information
>gi|255638688|gb|ACU19649.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357462065|ref|XP_003601314.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|217074916|gb|ACJ85818.1| unknown [Medicago truncatula] gi|355490362|gb|AES71565.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|225436033|ref|XP_002274680.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [Vitis vinifera] gi|296083979|emb|CBI24367.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297812293|ref|XP_002874030.1| homoserine dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319867|gb|EFH50289.1| homoserine dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79328303|ref|NP_001031916.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gi|332005543|gb|AED92926.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15242147|ref|NP_197605.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gi|28393222|gb|AAO42041.1| putative homoserine dehydrogenase [Arabidopsis thaliana] gi|28973501|gb|AAO64075.1| putative homoserine dehydrogenase [Arabidopsis thaliana] gi|332005542|gb|AED92925.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79328311|ref|NP_001031917.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gi|332005544|gb|AED92927.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2178998378 AT5G21060 [Arabidopsis thalian 0.996 0.703 0.770 1.1e-103
TIGR_CMR|CPS_4291825 CPS_4291 "aspartokinase/homose 0.955 0.309 0.422 6.5e-44
TIGR_CMR|SO_3415822 SO_3415 "aspartokinase I/homos 0.955 0.310 0.386 1.7e-42
UNIPROTKB|Q9KPK3825 VC_2364 "Aspartokinase I/homos 0.955 0.309 0.383 4.6e-42
TIGR_CMR|VC_2364825 VC_2364 "aspartokinase I/homos 0.955 0.309 0.383 4.6e-42
UNIPROTKB|P00561820 thrA "ThrA" [Escherichia coli 0.955 0.310 0.393 8.6e-40
TAIR|locus:2133995916 AK-HSDH II "aspartate kinase-h 0.955 0.278 0.372 3.3e-39
TAIR|locus:2029564911 AK-HSDH I "aspartate kinase-ho 0.955 0.279 0.353 6.8e-39
SGD|S000003900359 HOM6 "Homoserine dehydrogenase 0.958 0.713 0.360 8.9e-38
ASPGD|ASPL0000040676368 AN2882 [Emericella nidulans (t 0.895 0.649 0.384 4.9e-37
TAIR|locus:2178998 AT5G21060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 205/266 (77%), Positives = 225/266 (84%)

Query:     1 LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAG 60
             LA VDCSAS ET+EIL +AVDLGCCIVLANKKP+TST E YDKL   PR IR+ESTVGAG
Sbjct:   112 LAVVDCSASMETIEILMKAVDLGCCIVLANKKPVTSTLEHYDKLALHPRFIRHESTVGAG 171

Query:    61 LPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRD 120
             LPVIASLNRI+SSGDPVHRIVGSLSGTLGYVMSE+EDGKPLSQVV+AAK LGYTEPDPRD
Sbjct:   172 LPVIASLNRIISSGDPVHRIVGSLSGTLGYVMSELEDGKPLSQVVQAAKKLGYTEPDPRD 231

Query:   121 DLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIG 180
             DL GMDVARK LILARLLG RI +DSIKIESLYPEEMGP +MSV+DFL  G+  LD +I 
Sbjct:   232 DLGGMDVARKGLILARLLGKRIIMDSIKIESLYPEEMGPGLMSVDDFLHNGIVKLDQNIE 291

Query:   181 ERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLV 240
             ERV+KAS  G VLRYVCVIEGS   VGI+E+ K+SPLGRLRGSDN++EIYSRCY EQPLV
Sbjct:   292 ERVKKASSKGCVLRYVCVIEGSSVQVGIREVSKDSPLGRLRGSDNIVEIYSRCYKEQPLV 351

Query:   241 IQXXXXXXXXXXXXVLADILDIQDLF 266
             IQ            VLADI+D+QDLF
Sbjct:   352 IQGAGAGNDTTAAGVLADIIDLQDLF 377
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;ISS
GO:0006520 "cellular amino acid metabolic process" evidence=IEA
GO:0008652 "cellular amino acid biosynthetic process" evidence=ISS
GO:0009067 "aspartate family amino acid biosynthetic process" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TIGR_CMR|CPS_4291 CPS_4291 "aspartokinase/homoserine dehydrogenase, threonine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3415 SO_3415 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPK3 VC_2364 "Aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2364 VC_2364 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P00561 thrA "ThrA" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2133995 AK-HSDH II "aspartate kinase-homoserine dehydrogenase ii" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029564 AK-HSDH I "aspartate kinase-homoserine dehydrogenase i" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000003900 HOM6 "Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040676 AN2882 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.691
3rd Layer1.1.1.30.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
PLN02700377 PLN02700, PLN02700, homoserine dehydrogenase famil 0.0
PRK09436819 PRK09436, thrA, bifunctional aspartokinase I/homos 6e-99
PRK09466810 PRK09466, metL, bifunctional aspartate kinase II/h 4e-62
COG0460333 COG0460, ThrA, Homoserine dehydrogenase [Amino aci 3e-61
pfam00742178 pfam00742, Homoserine_dh, Homoserine dehydrogenase 8e-61
PRK08374336 PRK08374, PRK08374, homoserine dehydrogenase; Prov 3e-29
PRK06270341 PRK06270, PRK06270, homoserine dehydrogenase; Prov 3e-23
PRK06349 426 PRK06349, PRK06349, homoserine dehydrogenase; Prov 2e-18
PRK06392326 PRK06392, PRK06392, homoserine dehydrogenase; Prov 4e-17
PRK06813346 PRK06813, PRK06813, homoserine dehydrogenase; Vali 3e-10
>gnl|CDD|215377 PLN02700, PLN02700, homoserine dehydrogenase family protein Back     alignment and domain information 
 Score =  517 bits (1332), Expect = 0.0
 Identities = 223/267 (83%), Positives = 241/267 (90%)

Query: 1   LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAG 60
           L  VDCSAS ET+  L +AVDLGCCIVLANKKPLTST EDYDKL + PRRIR+ESTVGAG
Sbjct: 111 LVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHPRRIRHESTVGAG 170

Query: 61  LPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRD 120
           LPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSE+EDGKP S+VVK AKSLGYTEPDPRD
Sbjct: 171 LPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELEDGKPFSEVVKQAKSLGYTEPDPRD 230

Query: 121 DLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIG 180
           DL GMDVARKALILARLLG RIN+DSIK+ESLYPEEMGP++MS +DFL +GL  LD  I 
Sbjct: 231 DLGGMDVARKALILARLLGKRINMDSIKVESLYPEEMGPDLMSTDDFLHSGLVELDLPIE 290

Query: 181 ERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLV 240
           ERV++ASL G VLRYVCVIEGS C VGI+ELPK+S LGRLRGSDNV+EIYSRCYSEQPLV
Sbjct: 291 ERVKEASLKGCVLRYVCVIEGSSCQVGIRELPKDSALGRLRGSDNVVEIYSRCYSEQPLV 350

Query: 241 IQGAGAGNDTTAAGVLADILDIQDLFP 267
           IQGAGAGNDTTAAGVLADILD+QDLF 
Sbjct: 351 IQGAGAGNDTTAAGVLADILDLQDLFH 377

Length = 377
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information
>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Back     alignment and domain information
>gnl|CDD|223536 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216092 pfam00742, Homoserine_dh, Homoserine dehydrogenase Back     alignment and domain information
>gnl|CDD|169409 PRK08374, PRK08374, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|235763 PRK06270, PRK06270, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|235783 PRK06349, PRK06349, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|102354 PRK06392, PRK06392, homoserine dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|168683 PRK06813, PRK06813, homoserine dehydrogenase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
PLN02700377 homoserine dehydrogenase family protein 100.0
COG0460333 ThrA Homoserine dehydrogenase [Amino acid transpor 100.0
PRK09466810 metL bifunctional aspartate kinase II/homoserine d 100.0
PRK09436819 thrA bifunctional aspartokinase I/homoserine dehyd 100.0
PRK06813346 homoserine dehydrogenase; Validated 100.0
PRK08374336 homoserine dehydrogenase; Provisional 100.0
PRK06392326 homoserine dehydrogenase; Provisional 100.0
PRK06349 426 homoserine dehydrogenase; Provisional 100.0
PRK06270341 homoserine dehydrogenase; Provisional 100.0
KOG0455364 consensus Homoserine dehydrogenase [Amino acid tra 100.0
PF00742179 Homoserine_dh: Homoserine dehydrogenase; InterPro: 100.0
PF03447117 NAD_binding_3: Homoserine dehydrogenase, NAD bindi 99.09
PRK13303265 L-aspartate dehydrogenase; Provisional 97.49
PRK05447385 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P 95.88
PRK11579346 putative oxidoreductase; Provisional 94.46
PRK10206344 putative oxidoreductase; Provisional 93.37
COG0673342 MviM Predicted dehydrogenases and related proteins 92.62
PRK13302271 putative L-aspartate dehydrogenase; Provisional 91.49
TIGR00036266 dapB dihydrodipicolinate reductase. 91.45
PRK13304265 L-aspartate dehydrogenase; Reviewed 91.38
PLN02696454 1-deoxy-D-xylulose-5-phosphate reductoisomerase 91.26
COG1712255 Predicted dinucleotide-utilizing enzyme [General f 89.76
PF01113124 DapB_N: Dihydrodipicolinate reductase, N-terminus; 89.72
PRK00048257 dihydrodipicolinate reductase; Provisional 89.13
TIGR03855229 NAD_NadX aspartate dehydrogenase. Members of this 88.86
PRK13301267 putative L-aspartate dehydrogenase; Provisional 87.61
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 83.54
TIGR01921324 DAP-DH diaminopimelate dehydrogenase. This model r 81.79
>PLN02700 homoserine dehydrogenase family protein Back     alignment and domain information 
Probab=100.00  E-value=1.4e-84  Score=615.54  Aligned_cols=267  Identities=84%  Similarity=1.258  Sum_probs=258.2

Q ss_pred             CeEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHHHHhCCCceEEeeeccccccchHHHHHhhcCCCcEEEE
Q 040627            1 LAFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVSRPRRIRYESTVGAGLPVIASLNRILSSGDPVHRI   80 (267)
Q Consensus         1 ~vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~la~~~~~~~yEatVggGiPii~~l~~~~~~gd~I~~i   80 (267)
                      .|+||||+|.+.+.+|++||++|+|||||||.++|.++++|+++++++++|+||||||||+|||+++++++.+||+|++|
T Consensus       111 ~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~~~~~~yEatVgaGlPiI~tl~~ll~sGd~I~~I  190 (377)
T PLN02700        111 LVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHPRRIRHESTVGAGLPVIASLNRILSSGDPVHRI  190 (377)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHcCCeEEEEeeeeeccchHHHHHHHhhccCCEEEE
Confidence            48999999988899999999999999999999999999999999998899999999999999999999999889999999


Q ss_pred             EEEeccchHHHhhcccCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCceEeeecCCCCCCCC
Q 040627           81 VGSLSGTLGYVMSEVEDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDSIKIESLYPEEMGPN  160 (267)
Q Consensus        81 ~GIlNGT~NyILs~m~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~dv~~~gi~p~~~~~~  160 (267)
                      +||||||+||||++|++|.+|+|||++||++|||||||++||+|+|+|+|++||||++|.+++++||+++|+.|+++...
T Consensus       191 ~GIlnGT~nyIl~~m~~g~~fseal~eAq~~GyaEpDP~~Dl~G~D~ArKl~ILAr~~G~~~~~~dv~v~~l~p~~~~~~  270 (377)
T PLN02700        191 VGSLSGTLGYVMSELEDGKPFSEVVKQAKSLGYTEPDPRDDLGGMDVARKALILARLLGKRINMDSIKVESLYPEEMGPD  270 (377)
T ss_pred             EEEEeChHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCCccccccHhHHHHHHHHHHHhCCCCChhhEEEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988644


Q ss_pred             CCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEECCeEEEEEEeecCCCCcccccCCCeEEEEEeeeeCCcceE
Q 040627          161 IMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEGSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLV  240 (267)
Q Consensus       161 ~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~~~~~V~p~~v~~~~pla~v~g~~N~v~i~t~~~~~~~l~  240 (267)
                      ..+.+||+..||+.+|..|.++++.|+++|+++||||++++++++|+|+.+|++|||++++|++|+|.|+|++|+++|++
T Consensus       271 ~~s~~~f~~~gi~~~d~~~~~~~~~A~~~g~~lR~Va~~~~~~~~V~~~~vp~~hpla~v~g~~N~v~~~t~~~~~~plv  350 (377)
T PLN02700        271 LMSTDDFLHSGLVELDLPIEERVKEASLKGCVLRYVCVIEGSSCQVGIRELPKDSALGRLRGSDNVVEIYSRCYSEQPLV  350 (377)
T ss_pred             ccchhhHhhcCCccCChHHHHHHHHHHHCCCEEEEEEEEECCeEEEEEEEECCCCccccCCCCceEEEEEecccCCcceE
Confidence            46889999878999999999999999999999999999998899999999999999999999999999999999988999


Q ss_pred             EEeCCCChHHHHHHHHHHHHHHhhhCC
Q 040627          241 IQGAGAGNDTTAAGVLADILDIQDLFP  267 (267)
Q Consensus       241 i~G~GAG~~~TA~av~~Dll~i~~~~~  267 (267)
                      ++|+|||+.+||+|||+||+++++.||
T Consensus       351 v~G~GAG~~~TA~~vl~Dll~i~~~~~  377 (377)
T PLN02700        351 IQGAGAGNDTTAAGVLADILDLQDLFH  377 (377)
T ss_pred             EEcCCCChhHhHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999886

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Back     alignment and domain information
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information
>PRK06813 homoserine dehydrogenase; Validated Back     alignment and domain information
>PRK08374 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK06392 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK06270 homoserine dehydrogenase; Provisional Back     alignment and domain information
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00742 Homoserine_dh: Homoserine dehydrogenase; InterPro: IPR001342 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information
>PRK13303 L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Back     alignment and domain information
>PRK11579 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK10206 putative oxidoreductase; Provisional Back     alignment and domain information
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] Back     alignment and domain information
>PRK13302 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00036 dapB dihydrodipicolinate reductase Back     alignment and domain information
>PRK13304 L-aspartate dehydrogenase; Reviewed Back     alignment and domain information
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase Back     alignment and domain information
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] Back     alignment and domain information
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] Back     alignment and domain information
>PRK00048 dihydrodipicolinate reductase; Provisional Back     alignment and domain information
>TIGR03855 NAD_NadX aspartate dehydrogenase Back     alignment and domain information
>PRK13301 putative L-aspartate dehydrogenase; Provisional Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>TIGR01921 DAP-DH diaminopimelate dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
1ebf_A358 Homoserine Dehydrogenase From S. Cerevisiae Complex 1e-38
1q7g_A359 Homoserine Dehydrogenase In Complex With Suicide In 1e-38
2ejw_A332 Homoserine Dehydrogenase From Thermus Thermophilus 7e-15
3do5_A327 Crystal Structure Of Putative Homoserine Dehydrogen 1e-14
3ing_A325 Crystal Structure Of Homoserine Dehydrogenase (Np_3 3e-14
3mtj_A444 The Crystal Structure Of A Homoserine Dehydrogenase 7e-12
3jsa_A328 Homoserine Dehydrogenase From Thermoplasma Volcaniu 5e-11
3c8m_A331 Crystal Structure Of Homoserine Dehydrogenase From 6e-11
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With Nad+ Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/269 (36%), Positives = 152/269 (56%), Gaps = 13/269 (4%)
Query: 4   VDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS-RPRR--IRYESTVGAG 60
           VD ++S+      T+ V+ G  I   NKK  +S    +  L S +P    + +E+TVGAG
Sbjct: 89  VDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATVGAG 148
Query: 61  LPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVEDGKP----LSQVVKAAKSLGYTEP 116
           LP+I+ L  I+ +GD V +I G  SGTL Y+ +E    +      S VVK AK LGYTEP
Sbjct: 149 LPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEP 208
Query: 117 DPRDDLSGMDVARKALILARLLGMRI-NIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLL 175
           DPRDDL+G+DVARK  I+ R+ G+ + +  S  ++SL P+ +  ++ S ++FL   L   
Sbjct: 209 DPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPL-ESVKSADEFLEK-LSDY 266
Query: 176 DNDIGERVRKASLNGNVLRYVCVIE--GSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRC 233
           D D+ +  ++A+    VLR++  ++      +VGI++   + P   L+GSDNV+ I ++ 
Sbjct: 267 DKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKR 326
Query: 234 YSEQPLVIQXXXXXXXXXXXXVLADILDI 262
           Y+  P+VIQ            VL D++ I
Sbjct: 327 YT-NPVVIQGAGAGAAVTAAGVLGDVIKI 354
>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide Inhibitor Complex Nad-5-Hydroxy-4-Oxonorvaline Length = 359 Back     alignment and structure
>pdb|2EJW|A Chain A, Homoserine Dehydrogenase From Thermus Thermophilus Hb8 Length = 332 Back     alignment and structure
>pdb|3DO5|A Chain A, Crystal Structure Of Putative Homoserine Dehydrogenase (Np_069768.1) From Archaeoglobus Fulgidus At 2.20 A Resolution Length = 327 Back     alignment and structure
>pdb|3ING|A Chain A, Crystal Structure Of Homoserine Dehydrogenase (Np_394635.1) From Thermoplasma Acidophilum At 1.95 A Resolution Length = 325 Back     alignment and structure
>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From Thiobacillus Denitrificans To 2.15a Length = 444 Back     alignment and structure
>pdb|3JSA|A Chain A, Homoserine Dehydrogenase From Thermoplasma Volcanium Complexed With Nad Length = 328 Back     alignment and structure
>pdb|3C8M|A Chain A, Crystal Structure Of Homoserine Dehydrogenase From Thermoplasma Volcanium Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
1ebf_A358 Homoserine dehydrogenase; dinucleotide, NAD, dimer 1e-100
3c8m_A331 Homoserine dehydrogenase; structural genomics, APC 3e-31
3ing_A325 Homoserine dehydrogenase; NP_394635.1, structural 1e-30
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 3e-27
3mtj_A 444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 2e-26
2ejw_A332 HDH, homoserine dehydrogenase; NAD-dependent, oxid 5e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* Length = 358 Back     alignment and structure
 Score =  295 bits (758), Expect = e-100
 Identities = 105/270 (38%), Positives = 160/270 (59%), Gaps = 13/270 (4%)

Query: 3   FVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDKLVS---RPRRIRYESTVGA 59
            VD ++S+      T+ V+ G  I   NKK  +S    +  L S       + +E+TVGA
Sbjct: 88  LVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATVGA 147

Query: 60  GLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSE----VEDGKPLSQVVKAAKSLGYTE 115
           GLP+I+ L  I+ +GD V +I G  SGTL Y+ +E      +    S VVK AK LGYTE
Sbjct: 148 GLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTE 207

Query: 116 PDPRDDLSGMDVARKALILARLLGMRI-NIDSIKIESLYPEEMGPNIMSVEDFLSTGLPL 174
           PDPRDDL+G+DVARK  I+ R+ G+ + +  S  ++SL P+ +  ++ S ++FL   L  
Sbjct: 208 PDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPL-ESVKSADEFLE-KLSD 265

Query: 175 LDNDIGERVRKASLNGNVLRYVCVIEGS--RCTVGIQELPKNSPLGRLRGSDNVLEIYSR 232
            D D+ +  ++A+    VLR++  ++ +    +VGI++   + P   L+GSDNV+ I ++
Sbjct: 266 YDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTK 325

Query: 233 CYSEQPLVIQGAGAGNDTTAAGVLADILDI 262
            Y+  P+VIQGAGAG   TAAGVL D++ I
Sbjct: 326 RYT-NPVVIQGAGAGAAVTAAGVLGDVIKI 354
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Length = 331 Back     alignment and structure
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Length = 325 Back     alignment and structure
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Length = 327 Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Length = 444 Back     alignment and structure
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} Length = 332 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
1ebf_A358 Homoserine dehydrogenase; dinucleotide, NAD, dimer 100.0
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 100.0
3ing_A325 Homoserine dehydrogenase; NP_394635.1, structural 100.0
2ejw_A332 HDH, homoserine dehydrogenase; NAD-dependent, oxid 100.0
3mtj_A 444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 100.0
3c8m_A331 Homoserine dehydrogenase; structural genomics, APC 100.0
1r0k_A388 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N 98.68
3upl_A446 Oxidoreductase; rossmann fold, NADPH binding; 1.50 98.22
3oqb_A383 Oxidoreductase; structural genomics, protein struc 96.87
1lc0_A294 Biliverdin reductase A; oxidoreductase, tetrapyrro 96.63
1ydw_A362 AX110P-like protein; structural genomics, protein 96.47
1f06_A320 MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH 96.26
3cea_A346 MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore 96.25
1j5p_A253 Aspartate dehydrogenase; TM1643, structural genomi 96.11
4ew6_A330 D-galactose-1-dehydrogenase protein; nysgrc, PSI-b 96.01
2glx_A332 1,5-anhydro-D-fructose reductase; NADP(H) dependen 95.98
3kux_A352 Putative oxidoreductase; oxidoreductase family, cs 95.7
3i23_A349 Oxidoreductase, GFO/IDH/MOCA family; structural ge 95.62
3gdo_A358 Uncharacterized oxidoreductase YVAA; structural ge 95.59
1zh8_A340 Oxidoreductase; TM0312, structural genomics, JO ce 95.58
2dc1_A236 L-aspartate dehydrogenase; NAD, oxidoreductase; HE 95.51
2ho3_A325 Oxidoreductase, GFO/IDH/MOCA family; streptococcus 95.51
3dty_A398 Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram 95.44
3e9m_A330 Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, 95.34
3o9z_A312 Lipopolysaccaride biosynthesis protein WBPB; oxido 95.29
3rc1_A350 Sugar 3-ketoreductase; sugar biosynthesis, TDP bin 95.19
3evn_A329 Oxidoreductase, GFO/IDH/MOCA family; structural ge 95.18
3e82_A364 Putative oxidoreductase; NAD, GFO/IDH/MOCA family, 95.1
3mz0_A344 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; 95.08
3ip3_A337 Oxidoreductase, putative; structural genomics, PSI 95.02
1h6d_A433 Precursor form of glucose-fructose oxidoreductase; 95.0
1xea_A323 Oxidoreductase, GFO/IDH/MOCA family; structural ge 94.88
2nvw_A479 Galactose/lactose metabolism regulatory protein GA 94.86
2p2s_A336 Putative oxidoreductase; YP_050235.1, structural g 94.85
3c1a_A315 Putative oxidoreductase; ZP_00056571.1, oxidoreduc 94.85
3f4l_A345 Putative oxidoreductase YHHX; structural genomics, 94.84
3fhl_A362 Putative oxidoreductase; NAD-binding domain, PSI-2 94.82
3v5n_A417 Oxidoreductase; structural genomics, PSI-biology, 94.64
3ohs_X334 Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d 94.64
2yfq_A421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 94.54
4had_A350 Probable oxidoreductase protein; structural genomi 94.04
3euw_A344 MYO-inositol dehydrogenase; protein structure init 94.03
3moi_A387 Probable dehydrogenase; structural genomics, PSI2, 93.98
3db2_A354 Putative NADPH-dependent oxidoreductase; two domai 93.8
3m2t_A359 Probable dehydrogenase; PSI, SGXNY, structural gen 93.7
3ezy_A344 Dehydrogenase; structural genomics, unknown functi 93.66
4hkt_A331 Inositol 2-dehydrogenase; structural genomics, nys 93.62
3e18_A359 Oxidoreductase; dehydrogenase, NAD-binding, struct 93.62
3oa2_A318 WBPB; oxidoreductase, sugar biosynthesis, dehydrog 93.6
2ixa_A444 Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver 93.48
4gqa_A412 NAD binding oxidoreductase; structural genomics, P 93.33
4fb5_A393 Probable oxidoreductase protein; PSI-biology, nysg 93.03
3u3x_A361 Oxidoreductase; structural genomics, PSI-biology, 92.92
3btv_A438 Galactose/lactose metabolism regulatory protein GA 92.85
4h3v_A390 Oxidoreductase domain protein; structural genomics 92.84
3ec7_A357 Putative dehydrogenase; alpha-beta, structural gen 92.62
3q2i_A354 Dehydrogenase; rossmann fold, UDP-sugar binding, N 92.56
3bio_A304 Oxidoreductase, GFO/IDH/MOCA family; structural ge 92.49
4f3y_A272 DHPR, dihydrodipicolinate reductase; structural ge 92.41
1tlt_A319 Putative oxidoreductase (virulence factor MVIM HO; 91.65
3a06_A376 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M 89.09
3uuw_A308 Putative oxidoreductase with NAD(P)-binding rossm 88.83
3ijp_A288 DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, 88.48
1p9l_A245 Dihydrodipicolinate reductase; oxidoreductase, lys 86.84
1nvm_B312 Acetaldehyde dehydrogenase (acylating), 4-hydroxy- 85.73
1dih_A273 Dihydrodipicolinate reductase; oxidoreductase; HET 84.46
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* Back     alignment and structure
Probab=100.00  E-value=1e-75  Score=552.65  Aligned_cols=262  Identities=39%  Similarity=0.651  Sum_probs=244.5

Q ss_pred             eEEEcCCChHHHHHHHHHHHcCCcEEccCCcccCCCHHHHHH--HHhC-CCceEEeeeccccccchHHHHHhhcCCCcEE
Q 040627            2 AFVDCSASSETVEILTQAVDLGCCIVLANKKPLTSTKEDYDK--LVSR-PRRIRYESTVGAGLPVIASLNRILSSGDPVH   78 (267)
Q Consensus         2 vvVd~t~~~~~~~~~~~aL~~G~hVVTaNK~~~a~~~~~l~~--la~~-~~~~~yEatVggGiPii~~l~~~~~~gd~I~   78 (267)
                      ||||||++.++++.+.+||++||||||+||+|+|.++.++++  ++++ ++.|+||++||+|+|+|+++|+++.+|++|.
T Consensus        87 vVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~~A~~~gv~~~~Ea~vg~giPii~~l~~~l~~G~~I~  166 (358)
T 1ebf_A           87 ILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVE  166 (358)
T ss_dssp             EEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEECGGGTTTTSSCHHHHHHHHHHTCCEE
T ss_pred             EEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHHHHHHcCCEEEEccccccCCcHHHHHHHHHHcCCCeE
Confidence            799999999888888899999999999999999966544444  5544 5699999999999999999999997799999


Q ss_pred             EEEEEeccchHHHhhcc----cCCCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHHhCCCCCCCc-eEeeecC
Q 040627           79 RIVGSLSGTLGYVMSEV----EDGKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARLLGMRINIDS-IKIESLY  153 (267)
Q Consensus        79 ~i~GIlNGT~NyILs~m----~~g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~~g~~i~~~d-v~~~gi~  153 (267)
                      +|+||+|||+||||++|    ++|.+|+|+|++||++||||+||++||+|+|+|+|++||||+.|.+++++| |+++||.
T Consensus       167 ~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~GyaE~DP~~Dv~G~D~a~Kl~ILa~~~g~~~~~~d~v~~egi~  246 (358)
T 1ebf_A          167 KIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLI  246 (358)
T ss_dssp             EEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHTCSCSSTHHHHTCHHHHHHHHHHHHHTTCCCCCTTSSCBCCCS
T ss_pred             EEEEEEeecceeeecccccccccCCCHHHHHHHHHHcCCCCCCcccCCCChhHHHHHHHHHHhcCCCCCCCCeeEEeccc
Confidence            99999999999999999    889999999999999999999999999999999999999998899999999 9999999


Q ss_pred             CCCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEEC-C-eEEEEEEeecCCCCcccccCCCeEEEEEe
Q 040627          154 PEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIEG-S-RCTVGIQELPKNSPLGRLRGSDNVLEIYS  231 (267)
Q Consensus       154 p~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~~-~-~~~V~p~~v~~~~pla~v~g~~N~v~i~t  231 (267)
                      |+++. +..+.++|+.+ |+.+|..|.+++++|+++|+++||||+++. + +++|+|+.+|++|||++|+|++|+|.|+|
T Consensus       247 p~~~~-~~~~~~~f~~~-l~~~d~~~~~~~~~A~~~g~~iklv~~~~~~~~~~~v~~~~v~~~~pla~v~g~~N~v~~~~  324 (358)
T 1ebf_A          247 PKPLE-SVKSADEFLEK-LSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKT  324 (358)
T ss_dssp             CGGGS-TTSCTHHHHHH-HGGGHHHHHHHHHHHTTTTEEEEEEEEEETTTTEEEEEEEEEESSSGGGGCCTTCEEEEEEE
T ss_pred             ccccc-ccccHHHHHhc-CcccchhhHHHHHHHHHCCCEEEEEEEEEeCCCeEEEEEEEECCCCccccCCCCCEEEEEec
Confidence            99887 33489999987 999999999999999999999999999984 4 79999999999999999999999999999


Q ss_pred             eeeCCcceEEEeCCCChHHHHHHHHHHHHHHhhhC
Q 040627          232 RCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLF  266 (267)
Q Consensus       232 ~~~~~~~l~i~G~GAG~~~TA~av~~Dll~i~~~~  266 (267)
                      ++| ++|++|+|+|||+.+||+||++||+++++++
T Consensus       325 ~~~-~~~~~~~G~GAG~~~TA~av~~Dii~i~~~~  358 (358)
T 1ebf_A          325 KRY-TNPVVIQGAGAGAAVTAAGVLGDVIKIAQRL  358 (358)
T ss_dssp             SSC-SSCEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccc-CccEEEEecCCChHHHHHHHHHHHHHHHhcC
Confidence            999 6799999999999999999999999999875
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Back     alignment and structure
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Back     alignment and structure
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Back     alignment and structure
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* Back     alignment and structure
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* Back     alignment and structure
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Back     alignment and structure
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Back     alignment and structure
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Back     alignment and structure
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Back     alignment and structure
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Back     alignment and structure
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} Back     alignment and structure
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Back     alignment and structure
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Back     alignment and structure
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Back     alignment and structure
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Back     alignment and structure
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Back     alignment and structure
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Back     alignment and structure
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Back     alignment and structure
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Back     alignment and structure
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Back     alignment and structure
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Back     alignment and structure
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Back     alignment and structure
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Back     alignment and structure
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Back     alignment and structure
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Back     alignment and structure
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Back     alignment and structure
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Back     alignment and structure
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Back     alignment and structure
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Back     alignment and structure
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Back     alignment and structure
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} Back     alignment and structure
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Back     alignment and structure
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Back     alignment and structure
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Back     alignment and structure
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} Back     alignment and structure
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Back     alignment and structure
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Back     alignment and structure
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Back     alignment and structure
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Back     alignment and structure
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Back     alignment and structure
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Back     alignment and structure
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Back     alignment and structure
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Back     alignment and structure
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 267
d1ebfa2190 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Bak 2e-37
d1ebfa1168 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogena 3e-11
>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (322), Expect = 2e-37
 Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 10/193 (5%)

Query: 62  PVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVE----DGKPLSQVVKAAKSLGYTEPD 117
           P+I+ L  I+ +GD V +I G  SGTL Y+ +E      +    S VVK AK LGYTEPD
Sbjct: 1   PIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPD 60

Query: 118 PRDDLSGMDVARKALILARLL-GMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLD 176
           PRDDL+G+DVARK  I+ R+      +  S  ++SL P+      +   D     L   D
Sbjct: 61  PRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPK--PLESVKSADEFLEKLSDYD 118

Query: 177 NDIGERVRKASLNGNVLRYVCVIE--GSRCTVGIQELPKNSPLGRLRGSDNVLEIYSRCY 234
            D+ +  ++A+    VLR++  ++      +VGI++   + P   L+GSDNV+ I ++ Y
Sbjct: 119 KDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRY 178

Query: 235 SEQPLVIQGAGAG 247
           +  P+VIQGAGAG
Sbjct: 179 T-NPVVIQGAGAG 190
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
d1ebfa2190 Homoserine dehydrogenase {Baker's yeast (Saccharom 100.0
d1ebfa1168 Homoserine dehydrogenase {Baker's yeast (Saccharom 99.84
d1j5pa4132 Hypothetical protein TM1643 {Thermotoga maritima [ 98.6
d1f06a1170 Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb 95.74
d1lc0a1172 Biliverdin reductase {Rat (Rattus norvegicus) [Tax 90.52
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 90.29
d1yl7a1135 Dihydrodipicolinate reductase {Mycobacterium tuber 88.92
d1zh8a1181 Hypothetical protein TM0312 {Thermotoga maritima [ 87.77
d1tlta1164 Virulence factor MviM {Escherichia coli [TaxId: 56 85.41
d1vm6a3128 Dihydrodipicolinate reductase {Thermotoga maritima 80.63
>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-56  Score=385.18  Aligned_cols=183  Identities=40%  Similarity=0.670  Sum_probs=168.8

Q ss_pred             cchHHHHHhhcCCCcEEEEEEEeccchHHHhhcccC----CCCHHHHHHHHHHcCCCCCCcCCCCCCcchHHHHHHHHHH
Q 040627           62 PVIASLNRILSSGDPVHRIVGSLSGTLGYVMSEVED----GKPLSQVVKAAKSLGYTEPDPRDDLSGMDVARKALILARL  137 (267)
Q Consensus        62 Pii~~l~~~~~~gd~I~~i~GIlNGT~NyILs~m~~----g~~f~eal~~Aq~~GyaE~DP~~Dl~G~Daa~Kl~ILa~~  137 (267)
                      |||++||+++.+||+|++|+||||||||||||+|++    |.+|+|||++||++||||+||++||+|+|+|+|++||||+
T Consensus         1 PiI~~l~~~l~~gd~I~~i~GIlNGT~NyILt~m~~~~~~g~~f~~al~~Aq~lGyaE~DPt~Dv~G~Daa~Kl~ILa~~   80 (190)
T d1ebfa2           1 PIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRI   80 (190)
T ss_dssp             SCHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHTCSCSSTHHHHTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhccCeEEEEEEEEeccHHHHHHHhhhcccCCccHHHHHHHHHhcCccCCCchhhhhcchHHHHHHHHHHH
Confidence            999999999977999999999999999999999963    8999999999999999999999999999999999999997


Q ss_pred             -hCCCCCCCceEeeecCCCCCCCCCCCHHHHHhcCCCCCChHHHHHHHHHHhCCCeeEEEEEEE--CCeEEEEEEeecCC
Q 040627          138 -LGMRINIDSIKIESLYPEEMGPNIMSVEDFLSTGLPLLDNDIGERVRKASLNGNVLRYVCVIE--GSRCTVGIQELPKN  214 (267)
Q Consensus       138 -~g~~i~~~dv~~~gi~p~~~~~~~~~~~df~~~gi~~~~~~~~~~i~~A~~~g~~lklva~~~--~~~~~V~p~~v~~~  214 (267)
                       ||..+.++||++++|.|..+.  .++..|+....+..++..+.++.+.|..+|+++||+++++  ++.++|+|+++|++
T Consensus        81 a~~~~~~~~~v~~~~i~~~gi~--~i~~~d~~~~~~~~~~~~~~~~~~~a~~~~~~l~~v~~~~~~~~~~~V~p~~vp~~  158 (190)
T d1ebfa2          81 SGVEVESPTSFPVQSLIPKPLE--SVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYS  158 (190)
T ss_dssp             TTCCCCCTTSSCBCCCSCGGGS--TTSCTHHHHHHHGGGHHHHHHHHHHHTTTTEEEEEEEEEETTTTEEEEEEEEEESS
T ss_pred             HcCCccCchhcccccccccchh--ccchHHHHHHhccCcchHHHHHHHHhhhcCceEEEEEEEecCCccccccceeeCCC
Confidence             788888999999999888776  7776666554578888888888999999999999999998  45899999999999


Q ss_pred             CCcccccCCCeEEEEEeeeeCCcceEEEeCCCC
Q 040627          215 SPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAG  247 (267)
Q Consensus       215 ~pla~v~g~~N~v~i~t~~~~~~~l~i~G~GAG  247 (267)
                      |||++|+|++|+|.|+|++|. +|++|+|||||
T Consensus       159 ~pLa~v~G~~NaV~i~t~~~~-g~l~~~G~GAG  190 (190)
T d1ebfa2         159 HPFASLKGSDNVISIKTKRYT-NPVVIQGAGAG  190 (190)
T ss_dssp             SGGGGCCTTCEEEEEEESSCS-SCEEEEECCCC
T ss_pred             CeeeecCCCcEEEEEEecCCC-CcEEEEecCCC
Confidence            999999999999999999885 59999999998
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure