Citrus Sinensis ID: 040635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLKSIPANTDGHNIRPTKGG
Secondary Structure (PSIPRED)
ccccccEEEEccccccHHHHHHHHHccHHHHHcHHHccccccEEEEEEcccccccEEcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICasfdhqpeiwpspaEAVRVLDkfnnfpikrrgkymmnQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTqclagkdmnnfdclEDLKDLDHLLKEKIKVIADKIECemglksipantdghnirptkgg
Flexible Loop (DISEMBL)
mgrrrvqheliskesvrkvtfkkrraglkkklselttlCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNfpikrrgkymmnqntflskkisNLFERMRKErkknrglemdLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEmglksipantdghnirptkgg
Low Complexity Region (SEG)
MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCledlkdldhllkekIKVIADKIECEMGLKSIPANTDGHNIRPTKGG
Disordered region (IsUnstruct)
*************************AGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLF***********GLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLK*****************
Disordered Region (DISOPRED)
MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNF**************FL***IS*********************FTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIAD**************************
Disordered Region (DISEMBL)
MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLKSIPANTDGHNIRPTKGG
Disordered Region (DISPRO)
****RVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLKSI***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLKSIPANTDGHNIRPTKGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9FJK3	321	Agamous-like MADS-box pro	no	no	0.864	0.476	0.425	9e-25
Q7XJK8	278	MADS-box transcription fa	no	no	0.847	0.539	0.376	1e-20
O80805	279	MADS-box transcription fa	no	no	0.847	0.537	0.389	2e-20
Q7XJK6	366	Agamous-like MADS-box pro	no	no	0.847	0.409	0.368	1e-19
Q7XJK5	320	Agamous-like MADS-box pro	no	no	0.768	0.425	0.402	8e-19
Q9C6V3	339	Agamous-like MADS-box pro	no	no	0.796	0.415	0.328	1e-18
Q9C6V4	464	Agamous-like MADS-box pro	no	no	0.723	0.275	0.372	2e-18
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.621	0.416	0.341	3e-07
Q2QQA3	233	MADS-box transcription fa	yes	no	0.672	0.510	0.293	2e-06
Q03488	210	Floral homeotic protein F	N/A	no	0.751	0.633	0.290	2e-06

>sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1

 Score =  112 bits (281), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 101/155 (65%), Gaps = 2/155 (1%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   IS +S RK TFKKR+ GL KK+ EL+TLCG+TACAII + +D  PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
            +   RV+ +F   P   + K M++Q  FL ++I+   E +R++RK +R LEM  +  QC
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LAGKDMNNFDC-LEDLKDLDHLLKEKIKVIADKIE 154
           L G +M  F   + DL DL +++++ +K +  +IE
Sbjct: 121 LIG-NMEMFHLNIVDLNDLGYMIEQYLKDVNRRIE 154

Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK8|PHE2_ARATH MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 4/154 (2%)

Query: 3   RRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPA 62
           +R+++  LI     RK TF KR+ G+ KKL+EL TLCGV ACA++ + F+  PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  EAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQCL 121
               V+ KF    +  R K M++Q TF+S++I+   E+++K R +N   ++ +LMF  CL
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFG-CL 120

Query: 122 AGK-DMNNFDCLEDLKDLDHLLKEKIKVIADKIE 154
            G+ ++ N D   DL+DL   + + +  +  +IE
Sbjct: 121 KGETNVYNLDG-RDLQDLSLYIDKYLNGLTRRIE 153

Probable transcription factor involved in the development of gametophytes and seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|O80805|PHE1_ARATH MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)

Query: 3   RRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPA 62
           R +++   I  +SVRK TF KR+ G+ KK +EL TLCGV ACA+I + ++   E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  EAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQCL 121
               V+ KF  F +  R K M++Q TFL ++I+   ER++K R +NR  ++ DLMF  CL
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFG-CL 120

Query: 122 AGK-DMNNFDCLEDLKDLDHLLKEKIKVIADKIE 154
            G+ D+++     DL DL+  L + +  +  ++E
Sbjct: 121 KGEVDVSHLHG-RDLLDLNVFLNKYLNGVIRRVE 153

Probable transcription factor involved in the development of gametophytes and seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 2/152 (1%)

Query: 4   RRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAE 63
           ++V+  LI+ E  RK +F KR+ G+ KKL EL+TLCGV ACA+I + F   PE WPS   
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  AVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAG 123
           A +V  +F   P   R K MM+Q T+L ++I+   E+++    +NR L++      C+ G
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 K-DMNNFDCLEDLKDLDHLLKEKIKVIADKIE 154
           K    ++D  +DL+DL   +   +  +  +IE
Sbjct: 122 KMSQYHYDA-KDLQDLQSCINLYLDQLNGRIE 152

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK5|AGL90_ARATH Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 3/139 (2%)

Query: 4   RRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAE 63
           ++V+  LI+ E  RK +F KR+ G+ KKL EL+TLCGV ACA+I + F   PE WPS   
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  AVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAG 123
           A +V  KF   P   R + MM+Q T L ++I+   E+++    +NR L++      C+ G
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 KDMNNFDCLEDLKDLDHLL 142
           K M+ +    D KDL  LL
Sbjct: 122 K-MSQYRY--DAKDLQDLL 137

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V3|AGL86_ARATH Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana GN=AGL86 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 5/146 (3%)

Query: 3   RRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPA 62
           R +++  LI+ ++ R+ TF+KR+ G+  KL ELTTLCGV ACA+I + +++ P +WPS  
Sbjct: 2   RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTE 60

Query: 63  EAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLA 122
                +  F   P   + K MM+  T+L  KI+   +++   R++NR  ++      C+ 
Sbjct: 61  GVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVE 120

Query: 123 GKDMNNFDCLEDLKDL----DHLLKE 144
           GK   +     DL+DL    DH + +
Sbjct: 121 GKMSEHQYGARDLQDLSLYIDHYINQ 146

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 10  LISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLD 69
           LI     R+ TF+KR AG++KKL ELTTLC + ACA+I + F++ P +WPS      V+ 
Sbjct: 9   LIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTEGVQEVIS 67

Query: 70  KFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNF 129
           +F   P   R K MM+  TFL  +I+    ++   R++NR  ++      C+ GK     
Sbjct: 68  EFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVGGKMSEQQ 127

Query: 130 DCLEDLKDL 138
               DL+DL
Sbjct: 128 YGARDLQDL 136

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 7/117 (5%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           +GR+++    I KES R+VTF KRRAGL KK SEL TLCG     II  S   +P  +  
Sbjct: 62  IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCG-AEIGIIVFSPAKKPFSFGH 120

Query: 61  PAEAVRVLDKF---NNFPIKRRGKYMMNQNTF--LSKKISNLFERMRKERKKNRGLE 112
           P+    VLD++   NN  + +  +   +      L+ +++++   + +E+KK + +E
Sbjct: 121 PS-VESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAME 176

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QQA3|MAD20_ORYSJ MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           MGR +VQ   I  E  R+VTF KRR GL KK  E+  LC V   AI+ ++  +      S
Sbjct: 1   MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKIS-------NLFERMRKERKKNRGLEM 113
                R+L+K++   +   G  ++ +   L   +S          E ++K ++   G E+
Sbjct: 61  HTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQEL 120

Query: 114 DLMFTQ 119
           D +  Q
Sbjct: 121 DSLTLQ 126

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q03488|FBP1_PETHY Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 29/162 (17%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           MGR +++ + I   S R+VT+ KRR G+ KK  E++ LC      II AS     E   S
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF--S 58

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
               V +LD+++    +R           L  K  NL   + K +K N  ++++L   + 
Sbjct: 59  STSLVDILDQYHKLTGRR----------LLDAKHENLDNEINKVKKDNDNMQIEL---RH 105

Query: 121 LAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLKSI 162
           L G         ED+  L+H    ++ ++ D +E   GL SI
Sbjct: 106 LKG---------EDITSLNH---RELMILEDALEN--GLTSI 133

Probable transcription factor.

Petunia hybrida (taxid: 4102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
224136003	162	predicted protein [Populus trichocarpa]	0.870	0.950	0.5	7e-39
224124310	164	predicted protein [Populus trichocarpa]	0.864	0.932	0.451	6e-31
449435956	225	PREDICTED: agamous-like MADS-box protein	0.870	0.684	0.442	9e-29
255558128	251	mads box protein, putative [Ricinus comm	0.870	0.613	0.458	9e-28
421957990	207	MADS-box protein AGL83 [Aquilegia coerul	0.977	0.835	0.368	3e-27
225432218	235	PREDICTED: agamous-like MADS-box protein	0.932	0.702	0.367	5e-27
206114257	239	type I MADS box transcription factor [Pe	0.870	0.644	0.438	1e-26
224125202	231	predicted protein [Populus trichocarpa]	0.836	0.640	0.463	2e-26
147780254	189	hypothetical protein VITISV_037765 [Viti	0.966	0.904	0.413	3e-26
356537892	251	PREDICTED: agamous-like MADS-box protein	0.870	0.613	0.467	3e-26

>gi|224136003|ref|XP_002327357.1| predicted protein [Populus trichocarpa] gi|222835727|gb|EEE74162.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 109/154 (70%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           MGRR+V+HELIS ES RKVTF+KR+AGL KKL EL TLCGV ACAII +++D QPEIWPS
Sbjct: 1   MGRRKVKHELISNESARKVTFRKRKAGLLKKLDELATLCGVIACAIIFSAYDDQPEIWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
           PAEA+   ++    P ++ GKYM++Q  FLS  +S L +++ K+R+KN GLE++LM   C
Sbjct: 61  PAEALFAFEELKRLPSRKPGKYMVDQEAFLSTNVSKLNQQLEKQRRKNLGLELELMMAGC 120

Query: 121 LAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIE 154
             G D+++   +++  +    L+E I  +  +IE
Sbjct: 121 KEGMDLHDLKRIKNPSESIQFLEEMIASVTSEIE 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124310|ref|XP_002329991.1| predicted protein [Populus trichocarpa] gi|222871416|gb|EEF08547.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 101/155 (65%), Gaps = 2/155 (1%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   I  +S RK TFKKRR GL KK+SEL+TLCG+ ACAII + +D QPE+WPS
Sbjct: 1   MTRKKVKLAFIVNDSARKATFKKRRKGLMKKVSELSTLCGIDACAIIYSPYDSQPEVWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
           P    RVL KF   P   + K M+NQ +FL ++I+   E++RK+RK+NR  E+     QC
Sbjct: 61  PLGVQRVLSKFKTMPEMEQSKKMVNQESFLRQRITKASEQLRKQRKENREKEVTQAMFQC 120

Query: 121 LAGK-DMNNFDCLEDLKDLDHLLKEKIKVIADKIE 154
           L GK ++ N + + DL DL  ++   +K +  ++E
Sbjct: 121 LTGKINLANLNMI-DLNDLGWMIDRNLKDVEKRVE 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435956|ref|XP_004135760.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Cucumis sativus] gi|449510829|ref|XP_004163773.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Cucumis sativus]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   I+ +S RK T+KKR+ GL KK+SEL+TLCG+ ACAII + +D QPE+WPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMD-LMFTQ 119
           P    RVL +F   P   + K M+NQ TFL ++I+   E+++K RK NR  E+  LMF  
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 120 CLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC 155
             A K ++  + L DL DL  L+ + +K I  +I+ 
Sbjct: 121 LTAAKGLHGLNML-DLNDLGWLIDQNLKDITIRIDS 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558128|ref|XP_002520092.1| mads box protein, putative [Ricinus communis] gi|223540720|gb|EEF42281.1| mads box protein, putative [Ricinus communis]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 1/155 (0%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   IS ++ RK TFKKR+ GL KK+SEL+TLCGV ACAII + +D QPE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
             E  RVL +F N P   + K M+NQ +FL ++I    E+++K+RK NR  E+  +  Q 
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC 155
           L GK +NN + + DL DL  ++ + +K I  K+E 
Sbjct: 121 LTGKTLNNLNMM-DLNDLGWIINQYLKDIYKKVET 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|421957990|gb|AFX72872.1| MADS-box protein AGL83 [Aquilegia coerulea]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 114/179 (63%), Gaps = 6/179 (3%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQ-PEIWP 59
           M R++V+   I+ +S ++ T+KKR+ GL KK++EL+TLCGV ACA++   +D Q P++WP
Sbjct: 1   MARKKVKLAWIANDSAQRSTYKKRKQGLMKKINELSTLCGVEACAVVYGPYDPQVPDVWP 60

Query: 60  SPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQ 119
           SP++A RVL +F + P   R K MMNQ  FL ++++ + E+++K++++NR  E+  +  +
Sbjct: 61  SPSDAHRVLTQFKSLPEMERNKKMMNQEAFLKERMAKMREQIKKQQRENREFEITQLMNR 120

Query: 120 CL---AGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC-EMGLKSIPANTDGHNIRPT 174
            L    G+ + N +  E LKDL  ++ EK+K I  +I+     ++S     +G  I+ T
Sbjct: 121 TLIDGTGQILQNVETKE-LKDLAWMIDEKMKRIQKRIDSLRSTMESAVQQINGTGIQTT 178

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432218|ref|XP_002275385.1| PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 12/177 (6%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++VQ + I  ++ R+ T+KKR  GL KK  EL+ LCGV ACAI+ + +D QPE+WPS
Sbjct: 1   MARKKVQLQWIMNDTTRRTTYKKRVKGLMKKAKELSILCGVEACAIVYSPYDPQPEVWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
           P E VRV+ +F   P   + K  +NQ  ++ ++++   E++ K++KKNR +E+D +  QC
Sbjct: 61  PMEVVRVIGEFECRPENDQTKKRLNQENYIRQRVAKAKEQVVKQQKKNRRMELDNLMYQC 120

Query: 121 LAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLKSIPANTDGHNIRPTKGG 177
           LAG        +++L DL   + +++K I+ K+E              H+  P  GG
Sbjct: 121 LAGGRGLQGLNIKELSDLMWYIDDQLKPISHKMEY------------SHHPAPQPGG 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206114257|gb|ACI05256.1| type I MADS box transcription factor [Petunia x hybrida]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 104/155 (67%), Gaps = 1/155 (0%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   I+ +S RK TFKKR+ GL KK+SEL+TLCG+ ACAII + +++QPE+WP 
Sbjct: 1   MTRKKVKLAFITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYENQPEVWPY 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
              A+RVL +F N P   + K M+NQ +F+ ++I+   E+++K+ K+NR  EM  +  QC
Sbjct: 61  TMGALRVLAEFKNMPEMEQSKKMVNQESFIRQRIAKASEQLKKQSKENREKEMTEVMYQC 120

Query: 121 LAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC 155
           L GK + N + L DL DL  ++ + +K I  +IE 
Sbjct: 121 LTGKGLQNLN-LGDLNDLGWVVDQNLKEIYKRIEA 154

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125202|ref|XP_002319525.1| predicted protein [Populus trichocarpa] gi|222857901|gb|EEE95448.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 1/149 (0%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   I+ +S RK TFKKR+ GL KK+SEL+TLCG+ ACAIIC+ +D QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIEACAIICSPYDTQPEVWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
           P    RVL +F   P   + K M+NQ +FL ++I+   E ++K+RK NR  E+     QC
Sbjct: 61  PLGVQRVLSQFQRLPEMEQCKKMVNQESFLRQRITKANEHLKKQRKDNREKEVTHAMFQC 120

Query: 121 LAGKDMNNFDCLEDLKDLDHLLKEKIKVI 149
           L GK + N + L DL DL  ++   +K I
Sbjct: 121 LTGKSLQNLN-LMDLNDLGWMVDRNLKEI 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780254|emb|CAN65747.1| hypothetical protein VITISV_037765 [Vitis vinifera]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 108/174 (62%), Gaps = 3/174 (1%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   I+ +S RK TFKKR+ GL KK+SEL+TLCG+ ACAI+ + +D QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
           P    RVL  F   P   + K M+NQ +FL ++I+   E+++K+RK NR  E+  +  Q 
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC--EMGLKSIPANTDGHNIR 172
           L GK + N + + DL DL  ++ + +K I  +IE   +     IP+N    N+R
Sbjct: 121 LTGKGLQNLNIV-DLNDLGWMIDQNLKDIHKRIESLNKEAHPIIPSNFASANVR 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537892|ref|XP_003537440.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Glycine max]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 1   MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           M R++V+   I+ +S RK TFKKR+ GL KK+SEL+TLCG+ ACAI+ +S+D QPE+WPS
Sbjct: 1   MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSSYDPQPEVWPS 60

Query: 61  PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQ 119
           P    RVL KF   P   + K M+NQ +FL ++I    ++++K+RK NR  EM  LMF  
Sbjct: 61  PMGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTQLMFQY 120

Query: 120 CLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC 155
             AGK M+N   + DL DL  L+ + +K I  +IE 
Sbjct: 121 LSAGKIMHNISMV-DLNDLAWLIDQNLKDINRRIEV 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2152511	321	AGL80 "AGAMOUS-like 80" [Arabi	0.717	0.395	0.469	1.1e-25
TAIR|locus:2009457	163	AGL87 "AGAMOUS-like 87" [Arabi	0.864	0.938	0.360	5.9e-25
TAIR|locus:2146774	218	AT5G26630 [Arabidopsis thalian	0.706	0.573	0.409	2.4e-21
TAIR|locus:2206280	279	PHE1 "PHERES1" [Arabidopsis th	0.683	0.433	0.430	8e-21
TAIR|locus:2206325	278	AGL38 "AGAMOUS-like 38" [Arabi	0.717	0.456	0.4	2.7e-20
TAIR|locus:2146794	366	AGL36 "AGAMOUS-like 36" [Arabi	0.683	0.330	0.404	5.1e-19
TAIR|locus:2143769	320	AGL90 "AGAMOUS-like 90" [Arabi	0.683	0.378	0.404	5.1e-19
TAIR|locus:2074494	260	AT3G05860 [Arabidopsis thalian	0.694	0.473	0.384	1.7e-18
TAIR|locus:2028601	339	AGL86 "AGAMOUS-like 86" [Arabi	0.683	0.356	0.344	3.3e-18
TAIR|locus:2028591	464	AGL92 "AGAMOUS-like 92" [Arabi	0.683	0.260	0.368	6.5e-18

TAIR|locus:2152511 AGL80 "AGAMOUS-like 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 61/130 (46%), Positives = 88/130 (67%)

Query:     1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
             M R++V+   IS +S RK TFKKR+ GL KK+ EL+TLCG+TACAII + +D  PE+WPS
Sbjct:     1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query:    61 PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQ 119
              +   RV+ +F   P   + K M++Q  FL ++I+   E +R++RK +R LEM ++MF Q
Sbjct:    61 NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMF-Q 119

Query:   120 CLAGKDMNNF 129
             CL G +M  F
Sbjct:   120 CLIG-NMEMF 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2009457 AGL87 "AGAMOUS-like 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/161 (36%), Positives = 96/161 (59%)

Query:     1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
             MGRR+V H+LIS  + R+VTF+KR+ GL KK+ ELT LCG+ ACAII + +   PE+WP+
Sbjct:     1 MGRRKVTHQLISDNATRRVTFRKRKDGLLKKIYELTVLCGLPACAIIYSEYKDGPELWPN 60

Query:    61 PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQC 120
               E   +L++ +  P++++ KYMM+Q   ++K I +  +++ KE+   R +++ LM    
Sbjct:    61 LNEVRSILNRLSELPVEKQTKYMMDQKDLMNKMIQDAEKKLEKEKMHTRAMKLGLM---- 116

Query:   121 LAGKD--MNNFDCXXXXXXXXXXXXXXIKVIADKIEC-EMG 158
              AG +  + + DC              +K I ++I+  E G
Sbjct:   117 -AGSNDLITDTDCSEELARAADVVDKKLKAIRERIKAVEAG 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2146774 AT5G26630 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 52/127 (40%), Positives = 80/127 (62%)

Query:     1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
             M R++V+   I  E+ RK TFKKR+ GL KK  EL  LCGV   A++ + ++  PE+WPS
Sbjct:     1 MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query:    61 PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQ 119
                A +V+ ++    +  + K M+NQ TFL ++I+   E  +K RK+N+ LEM ++MF  
Sbjct:    61 REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMF-D 119

Query:   120 CLAGKDM 126
             CL+GK +
Sbjct:   120 CLSGKTL 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2206280 PHE1 "PHERES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 53/123 (43%), Positives = 77/123 (62%)

Query:     3 RRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPA 62
             R +++   I  +SVRK TF KR+ G+ KK +EL TLCGV ACA+I + ++   E WPS  
Sbjct:     2 RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query:    63 EAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQCL 121
                 V+ KF  F +  R K M++Q TFL ++I+   ER++K R +NR  ++ DLMF  CL
Sbjct:    62 GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFG-CL 120

Query:   122 AGK 124
              G+
Sbjct:   121 KGE 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0090406 "pollen tube" evidence=IDA

TAIR|locus:2206325 AGL38 "AGAMOUS-like 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 52/130 (40%), Positives = 81/130 (62%)

Query:     3 RRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPA 62
             +R+++  LI     RK TF KR+ G+ KKL+EL TLCGV ACA++ + F+  PE WPS  
Sbjct:     2 KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query:    63 EAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQCL 121
                 V+ KF    +  R K M++Q TF+S++I+   E+++K R +N   ++ +LMF  CL
Sbjct:    62 GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFG-CL 120

Query:   122 AGK-DMNNFD 130
              G+ ++ N D
Sbjct:   121 KGETNVYNLD 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2146794 AGL36 "AGAMOUS-like 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 49/121 (40%), Positives = 73/121 (60%)

Query:     4 RRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAE 63
             ++V+  LI+ E  RK +F KR+ G+ KKL EL+TLCGV ACA+I + F   PE WPS   
Sbjct:     2 KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query:    64 AVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAG 123
             A +V  +F   P   R K MM+Q T+L ++I+   E+++    +NR L++      C+ G
Sbjct:    62 AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query:   124 K 124
             K
Sbjct:   122 K 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2143769 AGL90 "AGAMOUS-like 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 49/121 (40%), Positives = 72/121 (59%)

Query:     4 RRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAE 63
             ++V+  LI+ E  RK +F KR+ G+ KKL EL+TLCGV ACA+I + F   PE WPS   
Sbjct:     2 KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query:    64 AVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAG 123
             A +V  KF   P   R + MM+Q T L ++I+   E+++    +NR L++      C+ G
Sbjct:    62 AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query:   124 K 124
             K
Sbjct:   122 K 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2074494 AT3G05860 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 48/125 (38%), Positives = 72/125 (57%)

Query:     1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
             M R+++    I+ ES+RK TF KR+ GL KK+ EL+ LCG+ ACA+I + F+  PE+WPS
Sbjct:     1 MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query:    61 PAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEM-DLMFTQ 119
              +E   V++ F       + K M++   F+ + IS   E   K+   N    M + MF Q
Sbjct:    61 NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMF-Q 119

Query:   120 CLAGK 124
              L+GK
Sbjct:   120 LLSGK 124

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2028601 AGL86 "AGAMOUS-like 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 42/122 (34%), Positives = 71/122 (58%)

Query:     3 RRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPA 62
             R +++  LI+ ++ R+ TF+KR+ G+  KL ELTTLCGV ACA+I + +++ P +WPS  
Sbjct:     2 RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTE 60

Query:    63 EAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLA 122
                  +  F   P   + K MM+  T+L  KI+   +++   R++NR  ++      C+ 
Sbjct:    61 GVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVE 120

Query:   123 GK 124
             GK
Sbjct:   121 GK 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2028591 AGL92 "AGAMOUS-like 92" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 6.5e-18, P = 6.5e-18
 Identities = 45/122 (36%), Positives = 69/122 (56%)

Query:     3 RRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPA 62
             R + +  LI     R+ TF+KR AG++KKL ELTTLC + ACA+I + F++ P +WPS  
Sbjct:     2 RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTE 60

Query:    63 EAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLA 122
                 V+ +F   P   R K MM+  TFL  +I+    ++   R++NR  ++      C+ 
Sbjct:    61 GVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVG 120

Query:   123 GK 124
             GK
Sbjct:   121 GK 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	8e-19
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	8e-17
smart00432	59	smart00432, MADS, MADS domain	7e-14
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	5e-10
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	2e-07

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 76.1 bits (188), Expect = 8e-19
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSP 61
          GR++++ + I  +  R VTF KRR GL KK SEL+TLCG     I+ +        WPS 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 AEAVRVLDKFNNFPIKRRGKYMMN 85
           E   V+ +F       R K  ++
Sbjct: 61 -EVEGVISRFEVLSALERKKKAVD 83

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 70.2 bits (173), Expect = 8e-17
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
          GR +++ + I  ++ R+VTF KRR GL KK SEL+ LC      I+ +      E W S
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 62.6 bits (153), Expect = 7e-14
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
          GRR+++ + I  ++ R+VTF KRR GL KK  EL+ LC      I+ +      E    
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAII 47
          GR +++ + I   + R+VTF KRR GL KK  EL+ LC      II
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALII 46

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 9  ELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICAS 50
          + I  +S R+VTF KRR G+ KK  EL+ LC      II +S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSS 42

Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
smart00432	59	MADS MADS domain.	99.97
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.97
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.76
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.39
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.36
PRK04098	158	sec-independent translocase; Provisional	87.44
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.41
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	81.01
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	80.33

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.1e-37  Score=239.46  Aligned_cols=155  Identities=28%  Similarity=0.340  Sum_probs=115.0

Q ss_pred             CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCcccccc
Q 040635            1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRG   80 (177)
Q Consensus         1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~~~~   80 (177)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++|.|||++.++.+|+++|...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999877799999999998887777


Q ss_pred             ccccchhhhHHHH-HHHHHHHHHHHHH-----Hhh----hHHHHHHH----HHhhcCCCCCCCCCH-HHHHHHHHHHHHH
Q 040635           81 KYMMNQNTFLSKK-ISNLFERMRKERK-----KNR----GLEMDLMF----TQCLAGKDMNNFDCL-EDLKDLDHLLKEK  145 (177)
Q Consensus        81 k~~~~~~~~l~~~-~~kl~e~l~k~~~-----~~~----~~e~~~l~----~~~~~~~~~l~~Ls~-eeL~~l~~~Le~~  145 (177)
                      +...+.+.++... +..+......+..     .+.    ...+..+.    .+....+.++.+++. .+|..++..++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            7766666665433 2222111111110     000    01111111    111122677888888 8899999998888


Q ss_pred             HHHHHHHHHH
Q 040635          146 IKVIADKIEC  155 (177)
Q Consensus       146 l~~v~~r~~~  155 (177)
                      +..++.+...
T Consensus       161 ~~~~~~~~~~  170 (195)
T KOG0014|consen  161 LHNSRSSKSK  170 (195)
T ss_pred             hcCCCCCCCc
Confidence            8777776655

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=2.2e-34  Score=192.21  Aligned_cols=80  Identities=36%  Similarity=0.597  Sum_probs=74.6

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCccccccc
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGK   81 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~~~~k   81 (177)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.|.+||++. +..+|++|..++..++.+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhhhhc
Confidence            7999999999999999999999999999999999999999999999999999999999765 999999999988766554


Q ss_pred             c
Q 040635           82 Y   82 (177)
Q Consensus        82 ~   82 (177)
                      +
T Consensus        80 ~   80 (83)
T cd00266          80 K   80 (83)
T ss_pred             c
Confidence            3

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=8.5e-34  Score=186.69  Aligned_cols=74  Identities=31%  Similarity=0.514  Sum_probs=67.9

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCccc
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIK   77 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~   77 (177)
                      ||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|+++. |++ +++++||+||+..+..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-f~s-~s~~~vl~ry~~~~~~   74 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-FSS-PSMEKIIERYQKTSGS   74 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-ecC-CCHHHHHHHHHhcccc
Confidence            8999999999999999999999999999999999999999999999999998766 554 4579999999987643

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.97  E-value=3e-32  Score=169.58  Aligned_cols=59  Identities=36%  Similarity=0.549  Sum_probs=57.5

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCC
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS   60 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps   60 (177)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+.+.|||+
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999974

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.97  E-value=1.5e-31  Score=166.55  Aligned_cols=59  Identities=39%  Similarity=0.652  Sum_probs=57.2

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCC
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS   60 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps   60 (177)
                      ||+||+|++|+|+..|++||+||+.||+|||+||||||||+||+|||||+|+.+.+||+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999998874

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=8.8e-29  Score=149.20  Aligned_cols=51  Identities=47%  Similarity=0.656  Sum_probs=45.3

Q ss_pred             eeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCC
Q 040635            9 ELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS   60 (177)
Q Consensus         9 ~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps   60 (177)
                      |+|+|+..|++||+|||.||||||+||||||||+||+|||||+|+++. |||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~-f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT-FPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE-EES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE-ecC
Confidence            589999999999999999999999999999999999999999998765 774

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.76  E-value=9.1e-20  Score=144.07  Aligned_cols=76  Identities=30%  Similarity=0.452  Sum_probs=64.7

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCc--------hHHHHHHHHhhc
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSP--------AEAVRVLDKFNN   73 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~--------~~v~~vl~ry~~   73 (177)
                      ||+||+|++|+|+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|-+|.| .-+        ..=+.+|....+
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTF-aTpKLep~i~s~~Gk~lIq~cLn  141 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF-ATPKLEPMITSDEGKALIQACLN  141 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEe-ccccccccccchhhHHHHHHHhc
Confidence            79999999999999999999999999999999999999999999999999987664 211        233677777777


Q ss_pred             Ccccc
Q 040635           74 FPIKR   78 (177)
Q Consensus        74 ~~~~~   78 (177)
                      .+..+
T Consensus       142 ~pd~~  146 (338)
T KOG0015|consen  142 APDTP  146 (338)
T ss_pred             CCCCC
Confidence            65543

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.39  E-value=1.5e-13  Score=113.41  Aligned_cols=60  Identities=25%  Similarity=0.376  Sum_probs=56.8

Q ss_pred             CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCC
Q 040635            1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS   60 (177)
Q Consensus         1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps   60 (177)
                      |||+|+.|..|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|..+.|+++
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp  140 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP  140 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence            789999999999999999999999999999999999999999999999999988776553

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.36  E-value=2.2e-06  Score=59.03  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040635           88 TFLSKKISNLFERMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMG  158 (177)
Q Consensus        88 ~~l~~~~~kl~e~l~k~~~~~~~~e~~~l~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~~l~  158 (177)
                      .++..++.++..+++.++..     .++++      |+++++||++||..|+..|+.++..||+|+.+++.
T Consensus        15 e~~~~e~~~L~~~~~~L~~~-----~R~~~------GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~   74 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKE-----LRHLM------GEDLESLSLKELQQLEQQLESALKRVRSRKDQLLM   74 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----Hhccc------cccccccchHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            56777888888888777653     44666      88999999999999999999999999999999543

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK04098 sec-independent translocase; Provisional

Probab=87.44  E-value=1  Score=33.45  Aligned_cols=93  Identities=16%  Similarity=0.211  Sum_probs=46.9

Q ss_pred             ceeeEEeecCCCCCcccCCchHHHHHHHHhhcCccccccccccchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 040635           42 TACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGKYMMNQNTFLSKKISNLFERMRKERKKNRGLEMDLMFTQCL  121 (177)
Q Consensus        42 ~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~~~~k~~~~~~~~l~~~~~kl~e~l~k~~~~~~~~e~~~l~~~~~  121 (177)
                      =||||||+|. ++|.+-   ..+...+..|+.....-  +...+.+  +  .+..++++..+.++.     +....... 
T Consensus        14 vVaLlvfGP~-KLP~~~---r~lGk~ir~~K~~~~~~--k~~l~~E--i--~~~elk~e~~k~k~~-----l~~~~~~l-   77 (158)
T PRK04098         14 VVAIIFLGPD-KLPQAM---VDIAKFFKAVKKTINDA--KSTLDKE--I--NIEEIKEEALKYKKE-----FESAVESL-   77 (158)
T ss_pred             HHHHhhcCch-HHHHHH---HHHHHHHHHHHHHHHHH--HHHHHHH--H--hhHHHHHHHHHHHHH-----HHHHHHHH-
Confidence            4789999998 577741   35777777777643221  1111111  0  122233332222211     11111101 


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040635          122 AGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC  155 (177)
Q Consensus       122 ~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~  155 (177)
                           -..+++++|.++...+....+.+.+-...
T Consensus        78 -----~~~~~~eel~~~~~~~~~~~~~~~~~~~~  106 (158)
T PRK04098         78 -----KKKLKFEELDDLKITAENEIKSIQDLLQD  106 (158)
T ss_pred             -----HhccChHHHHHHhhhhhhcchhHHHHHhh
Confidence                 02377888888877766666666665555

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.41  E-value=18  Score=26.86  Aligned_cols=60  Identities=22%  Similarity=0.281  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040635           90 LSKKISNLFERMRKERKKNRG--LEMDLMFTQCLAGKDMNNFDCLEDLKDLDHLLKEKIKVIADKIECEMGLK  160 (177)
Q Consensus        90 l~~~~~kl~e~l~k~~~~~~~--~e~~~l~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~~l~~~  160 (177)
                      +..++..+++++..++.+...  .++..+.          ..++.+||......|+..+..+.+|+.. |...
T Consensus        77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~----------~~~t~~el~~~i~~l~~e~~~l~~kL~~-l~~~  138 (169)
T PF07106_consen   77 LDAEIKELREELAELKKEVKSLEAELASLS----------SEPTNEELREEIEELEEEIEELEEKLEK-LRSG  138 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhC
Confidence            344566677777666655442  2333332          5778899999999999999999999998 6543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=81.01  E-value=4.9  Score=24.81  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=27.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040635          124 KDMNNFDCLEDLKDLDHLLKEKIKVIADKIEC  155 (177)
Q Consensus       124 ~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~  155 (177)
                      |.+++.||++||.+-...|+.-+..++.-+..
T Consensus        15 g~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~   46 (59)
T PF06698_consen   15 GEDLSLLSVEELEERIALLEAEIARLEAAIAK   46 (59)
T ss_pred             CCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999888887776665

The function of this family is unknown.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=80.33  E-value=0.29  Score=24.32  Aligned_cols=14  Identities=0%  Similarity=-0.218  Sum_probs=10.5

Q ss_pred             eeeEEeecCCCCCc
Q 040635           43 ACAIICASFDHQPE   56 (177)
Q Consensus        43 va~ivfsp~gk~~~   56 (177)
                      -.+.+|||+|+++.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            34668999999754

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-04
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		4e-04
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		4e-04
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		5e-04
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		6e-04

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1  MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWP- 59
          MGR+++Q   I  +  R+VTF KR+ GL KK  EL+ LC    C I    F+    ++  
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCD---CEIALIIFNSANRLFQY 57
Query: 60 SPAEAVRVLDKFNNFP 75
          +  +  RVL K+  + 
Sbjct: 58 ASTDMDRVLLKYTEYS 73

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWP-S 60
          GR+++Q   I  E  R+VTF KR+ GL KK  EL+ LC    C I    F+   +++  +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCD---CEIALIIFNSSNKLFQYA 57
Query: 61 PAEAVRVLDKFNNF 74
            +  +VL K+  +
Sbjct: 58 STDMDKVLLKYTEY 71

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWP-S 60
          GR+++Q   I  E  R+VTF KR+ GL KK  EL+ LC    C I    F+   +++  +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCD---CEIALIIFNSSNKLFQYA 57
Query: 61 PAEAVRVLDKFNNF 74
            +  +VL K+  +
Sbjct: 58 STDMDKVLLKYTAY 71

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWP-S 60
          GR+++Q   I  E  R+VTF KR+ GL KK  EL+ LC    C I    F+   +++  +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCD---CEIALIIFNSSNKLFQYA 57
Query: 61 PAEAVRVLDKFNNF 74
            +  +VL K+  +
Sbjct: 58 STDMDKVLLKYTEY 71

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWP-S 60
          GR+++Q   I  +  R+VTF KR+ GL KK  EL+ LC    C I    F+    ++  +
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCD---CEIALIIFNSANRLFQYA 57
Query: 61 PAEAVRVLDKFNNFP 75
            +  RVL K+  + 
Sbjct: 58 STDMDRVLLKYTEYS 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	3e-11
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-11
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	8e-11
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-08
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 1  MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAII 47
           GR +++ E I  +  R  TF KR+ G+ KK  EL+TL G     ++
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLV 55

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 56.3 bits (136), Expect = 3e-11
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 1  MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAII 47
           GR +++ E I  +  R  TF KR+ G+ KK  EL+TL G     ++
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLV 56

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 55.2 bits (133), Expect = 8e-11
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 1  MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAII 47
            RR+++ + I  ++ R VTF KR+ G+ KK  EL+ L G     ++
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLV 62

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAII 47
          GR+++Q   I  E  R+VTF KR+ GL KK  EL+ LC      II
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALII 46

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAII 47
          GR+++Q   I  E  R+VTF KR+ GL KK  EL+ LC      II
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALII 46

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 41/162 (25%)

Query: 3   RRRVQH--ELISKESV-RKVTFKKRRAGLKKKLSELT-----TLCGVTAC------AIIC 48
           R R+ +  ++ +K +V R   + K    L++ L EL       + GV           +C
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLK----LRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 49  ASFDHQPEI-----WPSPAEAVR---VLDKFNNFPIKRRGKYMMNQN-TFLSKKISNLFE 99
            S+  Q ++     W +         VL+            Y ++ N T  S   SN+  
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------LYQIDPNWTSRSDHSSNIKL 225

Query: 100 RMRKERKKNRGLEMDLMFTQCLAGKDMNNFDCLEDLKDLDHL 141
           R+   + + R L     +  CL          L ++++    
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL--------LVLLNVQNAKAW 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=8.4e-40  Score=217.88  Aligned_cols=80  Identities=33%  Similarity=0.475  Sum_probs=73.6

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCccccccc
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIKRRGK   81 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~~~~k   81 (177)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++++ |+| ++++.||+||+..+++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-f~s-~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-eCC-CCHHHHHHHHHhcCcccccC
Confidence            8999999999999999999999999999999999999999999999999999877 776 67999999999988776554


Q ss_pred             cc
Q 040635           82 YM   83 (177)
Q Consensus        82 ~~   83 (177)
                      ..
T Consensus        79 ~~   80 (90)
T 3p57_A           79 TN   80 (90)
T ss_dssp             CH
T ss_pred             Ch
Confidence            43

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=4.1e-39  Score=209.67  Aligned_cols=74  Identities=35%  Similarity=0.513  Sum_probs=67.8

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCccc
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPIK   77 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~~   77 (177)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++++ |++ ++++.||+||+..+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-~~s-~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-CCC-CCHHHHHHHHHhccCC
Confidence            8999999999999999999999999999999999999999999999999999887 665 5799999999987654

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=6.1e-37  Score=207.41  Aligned_cols=71  Identities=23%  Similarity=0.386  Sum_probs=66.6

Q ss_pred             CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhc
Q 040635            1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNN   73 (177)
Q Consensus         1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~   73 (177)
                      |||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|+++. |++ +++..||++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~s-ps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-FST-PKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EEC-TTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-ecC-CCHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999887 555 478999999964

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.4e-36  Score=203.17  Aligned_cols=70  Identities=26%  Similarity=0.410  Sum_probs=65.4

Q ss_pred             CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhh
Q 040635            1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFN   72 (177)
Q Consensus         1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~   72 (177)
                      |||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|+++. |++ ++++.+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-f~s-~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT-RKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-EEC-GGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-ecC-CCHHHHHhhhc
Confidence            89999999999999999999999999999999999999999999999999999877 665 57888988764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=6.9e-36  Score=203.50  Aligned_cols=69  Identities=26%  Similarity=0.413  Sum_probs=64.7

Q ss_pred             CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHh
Q 040635            1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKF   71 (177)
Q Consensus         1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry   71 (177)
                      |||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|+++. |++ +++..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~s-~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT-RKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-EEC-GGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-ecC-ccHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999877 555 5788888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	5e-14
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	8e-13
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-12

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (150), Expect = 5e-14
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSP 61
          GR+++Q   I  E  R+VTF KR+ GL KK  EL+ LC      II  S +   + + S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAST 59

Query: 62 AEAVRVLDKFNNF 74
           +  +VL K+  +
Sbjct: 60 -DMDKVLLKYTEY 71

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (142), Expect = 8e-13
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 1  MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPS 60
           GR +++ E I  +  R  TF KR+ G+ KK  EL+TL G     ++ +   H    + +
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT 60

Query: 61 PAEAVRVLDKFNNFPIKRR 79
            +   ++       + + 
Sbjct: 61 R-KLQPMITSETGKALIQT 78

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (138), Expect = 3e-12
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 2  GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSP 61
           RR+++ + I  ++ R VTF KR+ G+ KK  EL+ L G     ++ +        + +P
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-FSTP 61

Query: 62 AEAVRVLDKFNNFPIKRR 79
           +   ++ +     + + 
Sbjct: 62 -KFEPIVTQQEGRNLIQA 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-39  Score=203.07  Aligned_cols=70  Identities=37%  Similarity=0.538  Sum_probs=66.4

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhc
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNN   73 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~   73 (177)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|+++. ||+ +++++||+||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~-f~s-~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEE-eeC-CCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999998765 777 579999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=197.10  Aligned_cols=71  Identities=25%  Similarity=0.406  Sum_probs=66.7

Q ss_pred             CCCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhc
Q 040635            1 MGRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNN   73 (177)
Q Consensus         1 mgR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~   73 (177)
                      +||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|+++. |++ |+++.|+++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~-f~s-~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT-RKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEE-EEC-GGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEE-eeC-CCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999877 444 789999999974

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-36  Score=198.83  Aligned_cols=73  Identities=22%  Similarity=0.376  Sum_probs=67.4

Q ss_pred             CCcccceeeccCCCcccchhhcccchhhhhhhhhhhccCCceeeEEeecCCCCCcccCCchHHHHHHHHhhcCcc
Q 040635            2 GRRRVQHELISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICASFDHQPEIWPSPAEAVRVLDKFNNFPI   76 (177)
Q Consensus         2 gR~ki~i~~I~n~~~R~vtf~KRr~GL~KKA~ELs~LC~~~va~ivfsp~gk~~~~~ps~~~v~~vl~ry~~~~~   76 (177)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|+++. |++ |+++.||+||...+.
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~-f~s-p~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-FST-PKFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EEC-TTTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEe-ccC-CCHHHHHHHHhcccH
Confidence            8999999999999999999999999999999999999999999999999999776 444 689999999986443