Citrus Sinensis ID: 040642

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSNEEPSQQVEKSFGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTINNNLWPNPFYP
Secondary Structure (PSIPRED)
ccccccEEEEccccccHHHHHHHHcccccccccHHHHcccccEEEEEEccccccccccccHHHHHHHHHHHHcccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccccccccHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccHccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKtlcgidvcaiifspyddqpeiwpsplgvQRVLSRFKkmpemekskkmvsqDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNniatmarpsneepsqqveksfgfdgqMNMEAMQKQQWLVDlmstppqqhfgfggeevmQPFAdtinnnlwpnpfyp
Flexible Loop (DISEMBL)
mtrkkvklayisndsarkatfkkrkkgllkkvselktlcgIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKkmpemekskkmvsqdsflrQRIAKAYEQLkkqrkdnrekEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATmarpsneepsqQVEKSFGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTINNNLWPNPFYP
Low Complexity Region (SEG)
MTRKKVKLAYISNDSarkatfkkrkkgllkkVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFkkmpemekskkmVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSNEEPSQQVEKSFGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTINNNLWPNPFYP
Disordered region (IsUnstruct)
**************************GLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVL************************************************MFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNI**********************************WLVDLM******HFGFGGEEVMQPFADTINNNLW******
Disordered Region (DISOPRED)
MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRF****************************************EMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICR**********************************************************************************
Disordered Region (DISEMBL)
MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMP*********SQDSFLRQRIAKAYEQL**********EMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMA************KSFGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTINNNLWPNPFYP
Disordered Region (DISPRO)
*****VKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNN***********************GQMNMEA*Q*QQWLVDLMSTPPQQHFGFGGEEVMQPFADTINNNLWPNPFYP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKSKKMVSQDSFLxxxxxxxxxxxxxxxxxxxxxxxxRVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSNEEPSQQVEKSFGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTINNNLWPNPFYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q9FJK3	321	Agamous-like MADS-box pro	yes	no	0.690	0.501	0.639	8e-51
O80805	279	MADS-box transcription fa	no	no	0.815	0.681	0.426	3e-35
Q7XJK8	278	MADS-box transcription fa	no	no	0.875	0.733	0.380	3e-35
Q7XJK6	366	Agamous-like MADS-box pro	no	no	0.656	0.418	0.424	9e-30
Q9C6V3	339	Agamous-like MADS-box pro	no	no	0.665	0.457	0.391	6e-29
Q7XJK5	320	Agamous-like MADS-box pro	no	no	0.515	0.375	0.475	7e-28
Q9C6V4	464	Agamous-like MADS-box pro	no	no	0.656	0.329	0.389	2e-26
Q2QQA3	233	MADS-box transcription fa	yes	no	0.489	0.489	0.325	5e-10
Q8RVL4	247	MADS-box protein defh21 O	N/A	no	0.927	0.874	0.267	1e-09
Q9ATE5	268	MADS-box protein FBP24 OS	N/A	no	0.901	0.783	0.264	2e-09

>sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1

 Score =  200 bits (508), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 103/161 (63%), Positives = 127/161 (78%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLAYISNDS+RKATFKKRKKGL+KKV EL TLCGI  CAII+SPYD  PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
             GVQRV+S F+ +PEM++ KKMV Q+ FL+QRIAKA E L++QRKD+RE EM  VMFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIAT 161
           L G+    ++N++ LNDLG  IE  ++++ RR+E L N  T
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGT 161

Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2.
Arabidopsis thaliana (taxid: 3702)

>sp|O80805|PHE1_ARATH MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1

 Score =  148 bits (374), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 7/197 (3%)

Query: 3   RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
           R K+KL++I NDS RK TF KRKKG+LKK +EL TLCG+D CA+I SPY+   E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLT 122
           GV+ V+S+F +   ++++KKMV Q++FLRQRIAK  E+L+K R +NR  ++  +MF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 GSNVFLNMNMIGLNDLGLQIEHNIREICRRMETL----NNIATMARPSNEEPSQQVEKS- 177
           G     +++   L DL + +   +  + RR+E L     + +++  P    P+  V+ S 
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVAPT-VVDASV 180

Query: 178 -FGFDGQMNMEAMQKQQ 193
             GFDG+M  +  Q QQ
Sbjct: 181 PIGFDGRMIQDQNQNQQ 197

Probable transcription factor involved in the development of gametophytes and seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK8|PHE2_ARATH MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 125/218 (57%), Gaps = 14/218 (6%)

Query: 3   RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
           ++K+KL+ I N  +RK TF KRKKG+ KK++EL TLCG++ CA+++SP++  PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLT 122
           GV+ V+S+F ++  ++++KKMV Q++F+ QRIAK  EQL+K R +N   ++  +MF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 GSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSNEEPSQQVEKS---FG 179
           G     N++   L DL L I+  +  + RR+E L         S+  P   V  +    G
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEIL---IENGESSSSLPLPIVANAAAPVG 178

Query: 180 FDGQMNMEAMQKQ--------QWLVDLMSTPPQQHFGF 209
           FDG M     Q Q        Q L D     P++  GF
Sbjct: 179 FDGPMFQYHNQNQQKPVQFQYQALYDFYDQIPKKIHGF 216

Probable transcription factor involved in the development of gametophytes and seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1

 Score =  130 bits (326), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 98/153 (64%)

Query: 4   KKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLG 63
           KKVKL+ I+N+ +RK +F KRK G+ KK+ EL TLCG+  CA+I+SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTG 123
            ++V SRF +MP   ++KKM+ Q+++L +RI KA EQLK    +NRE ++ R MF  + G
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 SNVFLNMNMIGLNDLGLQIEHNIREICRRMETL 156
                + +   L DL   I   + ++  R+E++
Sbjct: 122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESI 154

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V3|AGL86_ARATH Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana GN=AGL86 PE=1 SV=1

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 3   RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
           R K+KL+ I+N ++R+ TF+KRK G+  K+ EL TLCG+  CA+I SPY++ P +WPS  
Sbjct: 2   RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTE 60

Query: 63  GVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLT 122
           GVQ  +S F + P  E+SK M+S +++L+ +I K  ++L+  R++NRE ++ + MF  + 
Sbjct: 61  GVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVE 120

Query: 123 GSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNN 158
           G           L DL L I+H I ++   +  L N
Sbjct: 121 GKMSEHQYGARDLQDLSLYIDHYINQLNSSVMLLTN 156

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJK5|AGL90_ARATH Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2

 Score =  124 bits (310), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 83/120 (69%)

Query: 4   KKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLG 63
           KKVKL+ I+N+ +RK +F KRK G+ KK+ EL TLCG+  CA+I+SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTG 123
            ++V S+F +MP   +++KM+ Q++ L +RI KA EQLK    +NRE ++ R MF  + G
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 3   RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
           R K KL  I +   R+ATF+KR  G+ KK+ EL TLC I  CA+I+SP+++ P +WPS  
Sbjct: 2   RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTE 60

Query: 63  GVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLT 122
           GVQ V+S F + P  E+SK M+S ++FLR +I K   +L+  R++NRE +++  MF  + 
Sbjct: 61  GVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVG 120

Query: 123 GSNVFLNMNMIGLNDLGLQIEHNIREICRRMETL 156
           G           L DL L  +  + ++  R + L
Sbjct: 121 GKMSEQQYGARDLQDLSLFTDQYLNQLNARKKFL 154

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QQA3|MAD20_ORYSJ MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 21/135 (15%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           M R KV++  I N+ +R+ TF KR+ GLLKK  E+  LC +DV AI+FS   +      S
Sbjct: 1   MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASS 60

Query: 61  PLGVQRVLSRFKK-------------MPEMEKSKKMVSQDSF-LRQRIAKAYEQLKKQRK 106
              ++R+L ++ +              PE+E S   +S D   LR RI    E LKK ++
Sbjct: 61  HTTMERILEKYDRHELLSEGNNVIEEFPELEGS---MSYDHIKLRGRI----EALKKSQR 113

Query: 107 DNREKEMERVMFQSL 121
           +   +E++ +  Q +
Sbjct: 114 NLMGQELDSLTLQDI 128

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RVL4|DEF21_ANTMA MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 31/247 (12%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           M R K+++  I N+++R+ TF KR+ GL+KK  EL  LC   +  I+FS      E    
Sbjct: 1   MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTP 60

Query: 61  PLGVQRVLSRFKK----MPEME-KSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREK--EM 113
           P  +++++ R+ K    +PEME ++      D  +++      E L  Q    R K  ++
Sbjct: 61  PFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDL 120

Query: 114 ERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSNEE---- 169
             V F+ LT     L+ ++  +    L++ H       +ME L     M    N+E    
Sbjct: 121 STVRFEELTELEKLLDQSLNKVRARKLELLH------EQMENLKRTEFMLEKENQEMYHW 174

Query: 170 -PSQQVEKSFGFDGQMNMEAMQKQQWLVDLMSTPPQQ----HFGFGGEEV---MQPFADT 221
             S Q+++      Q  +E   +QQ + +L     QQ     F F GE++     P  DT
Sbjct: 175 LMSNQIQR------QAEVEHHHQQQVMTELKLVEQQQPLMNEFPFFGEDLHLGTLPLLDT 228

Query: 222 INNNLWP 228
            +  L P
Sbjct: 229 HSYRLQP 235

Probable transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9ATE5|FBP24_PETHY MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 32/242 (13%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           M R K+++  I N ++R+ TF KR+ GLLKK  EL  LC   +  IIFS      E    
Sbjct: 4   MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           P  + +++SR+ +         +  +D+    R+ + Y+++ K R+D    ++     Q 
Sbjct: 64  PHSMSQIISRYLQT----TGASLPVEDN----RV-QLYDEVAKMRRDTLNLQLS---LQR 111

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRR--------METLNNIATMARPSNEEPSQ 172
             G ++ L      LN+L  Q+EH + +I  R        ME L     M    N +  Q
Sbjct: 112 YKGDDLSL-AQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQ 170

Query: 173 QV-------EKSFGFDGQMNMEAMQKQQWLVD---LMSTPPQQHFGFGGEEVMQPFADTI 222
            +       ++S   D + +    + QQ + +   L   P   HF F G++  QP   T+
Sbjct: 171 WLMNNQMYKQESAAMDHEDHHHHHEHQQAITELNLLGEQPLLSHFTFFGDQE-QPSTSTV 229

Query: 223 NN 224
           N+
Sbjct: 230 NH 231

Probable transcription factor.

Petunia hybrida (taxid: 4102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
225450435	236	PREDICTED: agamous-like MADS-box protein	0.939	0.927	0.592	8e-71
449435956	225	PREDICTED: agamous-like MADS-box protein	0.952	0.986	0.584	9e-69
255558128	251	mads box protein, putative [Ricinus comm	0.978	0.908	0.582	4e-68
224125202	231	predicted protein [Populus trichocarpa]	0.974	0.982	0.607	6e-68
224124310	164	predicted protein [Populus trichocarpa]	0.673	0.957	0.738	1e-62
356569385	239	PREDICTED: agamous-like MADS-box protein	0.961	0.937	0.552	2e-61
147780254	189	hypothetical protein VITISV_037765 [Viti	0.712	0.878	0.730	1e-58
206114257	239	type I MADS box transcription factor [Pe	0.965	0.941	0.530	3e-58
357460809	242	Agamous-like MADS-box protein AGL80 [Med	0.957	0.921	0.544	4e-58
356537892	251	PREDICTED: agamous-like MADS-box protein	0.931	0.864	0.564	2e-57

>gi|225450435|ref|XP_002279507.1| PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera] gi|296089853|emb|CBI39672.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 148/250 (59%), Positives = 186/250 (74%), Gaps = 31/250 (12%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLAYI+NDSARKATFKKRKKGL+KKVSEL TLCGID CAI++SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           PLGVQRVL+ FKKMPEME+SKKMV+Q+SFLRQRIAK  EQLKKQRKDNREKE+ +VM+QS
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNN-----------------IATMA 163
           LTG  +  N+N++ LNDLG  I+ N+++I +R+E+LN                  I T  
Sbjct: 121 LTGKGL-QNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGG 179

Query: 164 RPSNEEPSQQVEKSFGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTIN 223
           +   E+P+        FD   +M+A+Q+QQW VDL++  P +  GF G+++M PF D  +
Sbjct: 180 KAQEEKPA--------FD---SMDAIQRQQWFVDLVN--PNEQMGFAGDDMMLPFGDNNH 226

Query: 224 NNLWPNPFYP 233
           N LWPN F+P
Sbjct: 227 NALWPNGFFP 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435956|ref|XP_004135760.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Cucumis sativus] gi|449510829|ref|XP_004163773.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Cucumis sativus]

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 173/236 (73%), Gaps = 14/236 (5%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLAYI+NDSARKAT+KKRK+GL+KKVSEL TLCGI+ CAIIFSPYD QPE+WPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           P+GVQRVLS+FKKMPEME+SKKMV+Q++FLRQRIAKA EQLKK RKDNREKE+ R+MFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSNEEPSQQVEKSFGF 180
           LT +     +NM+ LNDLG  I+ N+++I  R+++L       +PS    S Q +     
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK-----IKPS----SSQPQAQVQA 171

Query: 181 DGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTI---NNNLWPNPFYP 233
             Q      Q   WL++L+S  PQ   GF G++++ PF D     NN +W N F+P
Sbjct: 172 QAQAPPTQPQTAAWLMELVS--PQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558128|ref|XP_002520092.1| mads box protein, putative [Ricinus communis] gi|223540720|gb|EEF42281.1| mads box protein, putative [Ricinus communis]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/256 (58%), Positives = 187/256 (73%), Gaps = 28/256 (10%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLAYISND+ARKATFKKRKKGL+KKVSEL TLCG+D CAII+SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
            + VQRVLS+FK MPEME+SKKMV+Q+SFLRQRI KA EQLKKQRKDNREKE+ +VMFQS
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMET----LNNIATMARP----------- 165
           LTG  +  N+NM+ LNDLG  I   +++I +++ET    +N   T A P           
Sbjct: 121 LTGKTLN-NLNMMDLNDLGWIINQYLKDIYKKVETVSKEINRQVTAAPPPPSPPPQQLPP 179

Query: 166 --------SNEEPSQQVEKSFGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQP 217
                   +   PSQQ  +   F+  +NMEAMQ+QQW++DL++  P ++ GF G+E+M P
Sbjct: 180 PSGPAQAIAEVAPSQQAAERQAFE--VNMEAMQRQQWIMDLIN--PHENMGFIGDEMMLP 235

Query: 218 FADTINNNLWPNPFYP 233
           F D  +N+LW N F+P
Sbjct: 236 FGDHNHNSLWSNAFFP 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125202|ref|XP_002319525.1| predicted protein [Populus trichocarpa] gi|222857901|gb|EEE95448.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 144/237 (60%), Positives = 181/237 (76%), Gaps = 10/237 (4%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLAYI+NDSARKATFKKRKKGL+KKVSEL TLCGI+ CAII SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIEACAIICSPYDTQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           PLGVQRVLS+F+++PEME+ KKMV+Q+SFLRQRI KA E LKKQRKDNREKE+   MFQ 
Sbjct: 61  PLGVQRVLSQFQRLPEMEQCKKMVNQESFLRQRITKANEHLKKQRKDNREKEVTHAMFQC 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIAT---MARPSNEEPSQQVEKS 177
           LTG ++  N+N++ LNDLG  ++ N++EI +R ++L N+      A PS E PSQ+ E  
Sbjct: 121 LTGKSL-QNLNLMDLNDLGWMVDRNLKEINKRSDSLKNVTNSQMAAGPSGEHPSQRAEVP 179

Query: 178 FGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGG-EEVMQPFADTINNNLWPNPFYP 233
                ++N + MQ+QQW +DL++  PQ+  GFGG +E+M PF D   N  W N F+P
Sbjct: 180 V---FEVNNDNMQRQQWFMDLLT--PQEPLGFGGSDEMMLPFVDNNQNPPWSNTFFP 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124310|ref|XP_002329991.1| predicted protein [Populus trichocarpa] gi|222871416|gb|EEF08547.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/157 (73%), Positives = 137/157 (87%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLA+I NDSARKATFKKR+KGL+KKVSEL TLCGID CAII+SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAFIVNDSARKATFKKRRKGLMKKVSELSTLCGIDACAIIYSPYDSQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           PLGVQRVLS+FK MPEME+SKKMV+Q+SFLRQRI KA EQL+KQRK+NREKE+ + MFQ 
Sbjct: 61  PLGVQRVLSKFKTMPEMEQSKKMVNQESFLRQRITKASEQLRKQRKENREKEVTQAMFQC 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLN 157
           LTG     N+NMI LNDLG  I+ N++++ +R+ETLN
Sbjct: 121 LTGKINLANLNMIDLNDLGWMIDRNLKDVEKRVETLN 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569385|ref|XP_003552882.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Glycine max]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/246 (55%), Positives = 176/246 (71%), Gaps = 22/246 (8%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLA+I+NDSARKATFKKRKKGL+KKVSEL TLCGID CAI++SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           P+GVQRVL++F++MPE+E+SKKMV+Q+SFLRQRI KA +QLKKQRKDNREKEM ++MFQ 
Sbjct: 61  PMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTQLMFQY 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIA----TMARPSNEEPSQQVEK 176
           L+   +  N++M+ LNDL   I+ N+++I RR+E L   A     +A P+  + + +VE 
Sbjct: 121 LSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQPQIAAPAVTDVAAKVED 180

Query: 177 SF--------GFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTIN--NNL 226
                     GFD  +NM+ MQKQ W ++LM+            E M P    +N  N  
Sbjct: 181 KGQGSQHGHQGFD--INMDLMQKQNWFMNLMNNGGGGG-----NEAM-PIVGDVNQQNGF 232

Query: 227 WPNPFY 232
           WPNPF+
Sbjct: 233 WPNPFF 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780254|emb|CAN65747.1| hypothetical protein VITISV_037765 [Vitis vinifera]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 144/167 (86%), Gaps = 1/167 (0%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLAYI+NDSARKATFKKRKKGL+KKVSEL TLCGID CAI++SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           PLGVQRVL+ FKKMPEME+SKKMV+Q+SFLRQRIAK  EQLKKQRKDNREKE+ +VM+QS
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSN 167
           LTG     N+N++ LNDLG  I+ N+++I +R+E+LN  A    PSN
Sbjct: 121 LTGKG-LQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAHPIIPSN 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206114257|gb|ACI05256.1| type I MADS box transcription factor [Petunia x hybrida]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/247 (53%), Positives = 173/247 (70%), Gaps = 22/247 (8%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLA+I+NDS+RKATFKKRKKGL+KKVSEL TLCGID CAII+SPY++QPE+WP 
Sbjct: 1   MTRKKVKLAFITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYENQPEVWPY 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
            +G  RVL+ FK MPEME+SKKMV+Q+SF+RQRIAKA EQLKKQ K+NREKEM  VM+Q 
Sbjct: 61  TMGALRVLAEFKNMPEMEQSKKMVNQESFIRQRIAKASEQLKKQSKENREKEMTEVMYQC 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNI----------ATMARPSNEEP 170
           LTG  +  N+N+  LNDLG  ++ N++EI +R+E L             A +  P  ++P
Sbjct: 121 LTGKGL-QNLNLGDLNDLGWVVDQNLKEIYKRIEALKKGASSSSSSSSQAAVTAPVEQKP 179

Query: 171 SQQVEKSFGFDGQMNMEAMQKQQWLVDLM--STPPQQHFGFG-GEEVMQP-FADTINNNL 226
             ++    G +G   M+   + +W  D M  ++   QH GFG G+E++ P F D  N ++
Sbjct: 180 VVEL----GLEG---MQQRTQAEWFTDWMNNTSTSDQHIGFGHGDEMIIPNFNDNHNTSV 232

Query: 227 WPNPFYP 233
           W N F+P
Sbjct: 233 WSNGFFP 239

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460809|ref|XP_003600686.1| Agamous-like MADS-box protein AGL80 [Medicago truncatula] gi|355489734|gb|AES70937.1| Agamous-like MADS-box protein AGL80 [Medicago truncatula]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/250 (54%), Positives = 174/250 (69%), Gaps = 27/250 (10%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLA+I NDSARKATFKKRKKGL+KKVSEL TLCGID CAII+SPYD QPE+WPS
Sbjct: 1   MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           PLGVQRVLS+F+KMPE+E+SKKMV+Q+SFLRQRI KA +QL KQRKDNREKEM ++MFQ 
Sbjct: 61  PLGVQRVLSKFRKMPELEQSKKMVNQESFLRQRIQKAKDQLTKQRKDNREKEMTQLMFQY 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLN-----------NIATMARPSNEE 169
           L+   V  N++M+ LND+   I+  +++I RR+E L+               +A      
Sbjct: 121 LSADQVMHNISMVDLNDMAWLIDQYLKDINRRVEMLSRNGQGQGQTQTQTQMVASTMVAN 180

Query: 170 PSQQVEKSF-GFDGQ----MNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTIN- 223
           P  ++E++  G  GQ    MNM+ MQKQ + ++LM+         GG +   P  + +N 
Sbjct: 181 PVPKIEENGQGSHGQHVLDMNMDVMQKQHFFMNLMNN--------GGGDQAPPMGN-VNP 231

Query: 224 -NNLWPNPFY 232
            N  WPNPF+
Sbjct: 232 PNGFWPNPFF 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537892|ref|XP_003537440.1| PREDICTED: agamous-like MADS-box protein AGL80-like [Glycine max]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/234 (56%), Positives = 171/234 (73%), Gaps = 17/234 (7%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           MTRKKVKLA+I+NDSARKATFKKRKKGL+KKVSEL TLCGID CAI++S YD QPE+WPS
Sbjct: 1   MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSSYDPQPEVWPS 60

Query: 61  PLGVQRVLSRFKKMPEMEKSKKMVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
           P+GVQRVLS+F++MPE+E+SKKMV+Q+SFLRQRI KA +QLKKQRKDNREKEM ++MFQ 
Sbjct: 61  PMGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTQLMFQY 120

Query: 121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLN-NIAT---MARPSNEEPSQQVEK 176
           L+   +  N++M+ LNDL   I+ N+++I RR+E L  N+ +   +A P   +   +VE 
Sbjct: 121 LSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNVQSQPQIAAPVVTDVVAKVED 180

Query: 177 S--------FGFDGQMNMEAMQKQQWLVDLMSTPPQQHFGFGGEEVMQPFADTI 222
           +         GFD  +N++ MQKQ W ++LM+       G  G E M PF   I
Sbjct: 181 NGQGSQHGQQGFD--INVDLMQKQNWFMNLMNNGSGD--GGAGNEAM-PFVGDI 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2152511	321	AGL80 "AGAMOUS-like 80" [Arabi	0.690	0.501	0.515	1.5e-41
TAIR|locus:2146774	218	AT5G26630 [Arabidopsis thalian	0.772	0.825	0.336	1.6e-24
TAIR|locus:2206280	279	PHE1 "PHERES1" [Arabidopsis th	0.815	0.681	0.350	4.2e-24
TAIR|locus:2206325	278	AGL38 "AGAMOUS-like 38" [Arabi	0.802	0.672	0.343	1.8e-23
TAIR|locus:2074494	260	AT3G05860 [Arabidopsis thalian	0.673	0.603	0.348	1.3e-22
TAIR|locus:2180300	119	AT5G27810 [Arabidopsis thalian	0.399	0.781	0.548	1.1e-21
TAIR|locus:2143769	320	AGL90 "AGAMOUS-like 90" [Arabi	0.579	0.421	0.348	3.6e-20
TAIR|locus:2028601	339	AGL86 "AGAMOUS-like 86" [Arabi	0.665	0.457	0.307	1.4e-18
TAIR|locus:2146794	366	AGL36 "AGAMOUS-like 36" [Arabi	0.656	0.418	0.333	1.9e-18
TAIR|locus:2054543	329	AGL46 "AGAMOUS-like 46" [Arabi	0.678	0.480	0.301	2.4e-17

TAIR|locus:2152511 AGL80 "AGAMOUS-like 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 83/161 (51%), Positives = 101/161 (62%)

Query:     1 MTRKKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
             MTRKKVKLAYISNDS                V EL TLCGI  CAII+SPYD  PE+WPS
Sbjct:     1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query:    61 PLGVQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
               GVQRV+S F            V Q+ FL+QRIAKA E L++QRKD+RE EM  VMFQ 
Sbjct:    61 NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query:   121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIAT 161
             L G+    ++N++ LNDLG  IE  ++++ RR+E L N  T
Sbjct:   121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGT 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2146774 AT5G26630 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 64/190 (33%), Positives = 99/190 (52%)

Query:     1 MTRKKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
             MTR+KVK+ +I N++                  EL  LCG+ + A++ SPY+  PE+WPS
Sbjct:     1 MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query:    61 PLGVQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
                  +V+S++            V+Q++FL+QRI KA E  KK RK+N+E EM+ +MF  
Sbjct:    61 REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query:   121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETL--NN-----IATMARPSNEEPSQQ 173
             L+G  +  ++    L D G  IE  ++++ RR+E L  NN     +  +A P+       
Sbjct:   121 LSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRNNEPSSALVPVAAPTTSSVMPV 180

Query:   174 VE---KSFGF 180
             VE    S GF
Sbjct:   181 VEMGSSSVGF 190

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2206280 PHE1 "PHERES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 69/197 (35%), Positives = 103/197 (52%)

Query:     3 RKKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
             R K+KL++I NDS                 +EL TLCG+D CA+I SPY+   E WPS  
Sbjct:     2 RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query:    63 GVQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLT 122
             GV+ V+S+F            V Q++FLRQRIAK  E+L+K R +NR  ++  +MF  L 
Sbjct:    62 GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query:   123 GSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLN----NIATMARPSNEEPSQQVEKS- 177
             G     +++   L DL + +   +  + RR+E L     + +++  P    P+  V+ S 
Sbjct:   122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVAPTV-VDASV 180

Query:   178 -FGFDGQMNMEAMQKQQ 193
               GFDG+M  +  Q QQ
Sbjct:   181 PIGFDGRMIQDQNQNQQ 197

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0090406 "pollen tube" evidence=IDA

TAIR|locus:2206325 AGL38 "AGAMOUS-like 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 67/195 (34%), Positives = 101/195 (51%)

Query:     3 RKKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
             ++K+KL+ I N                  ++EL TLCG++ CA+++SP++  PE WPS  
Sbjct:     2 KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query:    63 GVQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLT 122
             GV+ V+S+F            V Q++F+ QRIAK  EQL+K R +N   ++  +MF  L 
Sbjct:    62 GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query:   123 G-SNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIATMARPSNEEPSQQVEKS---F 178
             G +NV+ N++   L DL L I+  +  + RR+E L  I      S+  P   V  +    
Sbjct:   122 GETNVY-NLDGRDLQDLSLYIDKYLNGLTRRIEIL--IEN-GESSSSLPLPIVANAAAPV 177

Query:   179 GFDGQMNMEAMQKQQ 193
             GFDG M     Q QQ
Sbjct:   178 GFDGPMFQYHNQNQQ 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2074494 AT3G05860 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/158 (34%), Positives = 83/158 (52%)

Query:     1 MTRKKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
             MTRKK+ L+YI+N+S                + EL  LCGI+ CA+I+SP++  PE+WPS
Sbjct:     1 MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query:    61 PLGVQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
                V+ V+  F            VS + F+RQ I+K  E   K+  DN E+ M+  MFQ 
Sbjct:    61 NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQL 120

Query:   121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICR-RMETLN 157
             L+G    LN+      DL   I+  ++E+   + +T+N
Sbjct:   121 LSGKGEKLNLTDRNREDLCKYIDQYLKELYHHKNKTIN 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2180300 AT5G27810 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 51/93 (54%), Positives = 61/93 (65%)

Query:    32 VSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFXXXXXXXXXXXXVSQDSFLR 91
             V EL TLCGI  CAII+SPYD   E+WPS  GVQRV+S F            V Q+ FL+
Sbjct:     4 VHELSTLCGITSCAIIYSPYDTSHEVWPSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLK 63

Query:    92 QRIAKAYEQLKKQRKDNREKEMERVMFQSLTGS 124
             QRIAK  E L++QRKDN+E EM  VMF+ L G+
Sbjct:    64 QRIAKPTENLRRQRKDNKELEMTEVMFRCLIGN 96

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2143769 AGL90 "AGAMOUS-like 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 47/135 (34%), Positives = 67/135 (49%)

Query:     4 KKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLG 63
             KKVKL+ I+N+                 + EL TLCG+  CA+I+SP+   PE WPS  G
Sbjct:     2 KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query:    64 VQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTG 123
              ++V S+F            + Q++ L +RI KA EQLK    +NRE ++ R MF  + G
Sbjct:    62 AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query:   124 SNVFLNMNMIGLNDL 138
                    +   L DL
Sbjct:   122 KMSQYRYDAKDLQDL 136

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2028601 AGL86 "AGAMOUS-like 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 48/156 (30%), Positives = 78/156 (50%)

Query:     3 RKKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
             R K+KL+ I+N +                + EL TLCG+  CA+I SPY++ P +WPS  
Sbjct:     2 RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTE 60

Query:    63 GVQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLT 122
             GVQ  +S F            +S +++L+ +I K  ++L+  R++NRE ++ + MF  + 
Sbjct:    61 GVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVE 120

Query:   123 GSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNN 158
             G           L DL L I+H I ++   +  L N
Sbjct:   121 GKMSEHQYGARDLQDLSLYIDHYINQLNSSVMLLTN 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2146794 AGL36 "AGAMOUS-like 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 51/153 (33%), Positives = 78/153 (50%)

Query:     4 KKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLG 63
             KKVKL+ I+N+                 + EL TLCG+  CA+I+SP+   PE WPS  G
Sbjct:     2 KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query:    64 VQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTG 123
              ++V SRF            + Q+++L +RI KA EQLK    +NRE ++ R MF  + G
Sbjct:    62 AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query:   124 SNVFLNMNMIGLNDLGLQIEHNIREICRRMETL 156
                  + +   L DL   I   + ++  R+E++
Sbjct:   122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESI 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2054543 AGL46 "AGAMOUS-like 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 48/159 (30%), Positives = 78/159 (49%)

Query:     1 MTRKKVKLAYISNDSXXXXXXXXXXXXXXXXVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
             M RKK+ L YI ND                 +++LK LC ++ CA++++P++  P++WPS
Sbjct:     1 MARKKLNLTYIFNDRMRKRSFKQRREGFLKKLNDLKVLCDVNACAVVYNPFNSNPDVWPS 60

Query:    61 PLGVQRVLSRFXXXXXXXXXXXXVSQDSFLRQRIAKAYEQLKKQRKDNREKEMERVMFQS 120
                V  ++ +F            V+ + FL   I+K  +Q KK   +N+E  ++ VMF+ 
Sbjct:    61 KSEVNNIIKKFEMLPETQKKVKSVNHEEFLNLYISKVEKQSKKLIVENKETCLKEVMFKC 120

Query:   121 LTGSNVFLNMNMIGLNDLGLQIEHNIREICRRME-TLNN 158
             L G+     MN     DL   I+H +R +      TLNN
Sbjct:   121 LGGNMGDFVMNDNDRLDLCKFIDHYLRNLYHHKNVTLNN 159

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-31
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-24
smart00432	59	smart00432, MADS, MADS domain	8e-21
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	6e-15
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-12
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	3e-04

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  110 bits (276), Expect = 3e-31
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 2  TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSP 61
           RKK+K+  I N   R  TF KR++GL KK SEL TLCG +V  I++SP       WPS 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 LGVQRVLSRFKKMPEMEKSKKMVS 85
            V+ V+SRF+ +  +E+ KK V 
Sbjct: 61 -EVEGVISRFEVLSALERKKKAVD 83

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 92.2 bits (230), Expect = 1e-24
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 2  TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           R K+++  I N ++R+ TF KR+ GL KK SEL  LC  +V  I+FSP     E W S
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 82.2 bits (204), Expect = 8e-21
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 2  TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS 60
           R+K+++  I N + R+ TF KR+ GL KK  EL  LC  +V  I+FSP     E    
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 67.2 bits (165), Expect = 6e-15
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)

Query: 3  RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSP----YDDQPEIW 58
          R K+++  I N + R+ TF KR+ GLLKK  EL  LC  +V  IIFS     Y+     +
Sbjct: 2  RGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-----F 56

Query: 59 PSPLGVQRVLSRFKK 73
           SP  +++++ R++K
Sbjct: 57 SSP-SMEKIIERYQK 70

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 60.5 bits (147), Expect = 1e-12
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 11 ISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSP 50
          I N S R+ TF KR+ G+ KK  EL  LC  +V  IIFS 
Sbjct: 3  IENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSS 42

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDV 43
           +T +K+ ++YI+N + R  TF KRK G+ KK  EL  L G +V
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEV 123

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.91
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.73
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.35
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	97.98
PF08248	12	Tryp_FSAP: Tryptophyllin-3 skin active peptide; In	82.8
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	82.36

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=7.6e-36  Score=247.17  Aligned_cols=152  Identities=32%  Similarity=0.474  Sum_probs=111.0

Q ss_pred             CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChhhhhh
Q 040642            1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKS   80 (233)
Q Consensus         1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~~~~~   80 (233)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|||++.+|+.|++||...+...+.
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999877799999999998888888


Q ss_pred             hccccchhHHHHH-HHHHHHHHHHH-----HHHHHH----HHHHHH----HhhhccCCCCCCCCCH-HHHHHHHHHHHHH
Q 040642           81 KKMVSQDSFLRQR-IAKAYEQLKKQ-----RKDNRE----KEMERV----MFQSLTGSNVFLNMNM-IGLNDLGLQIEHN  145 (233)
Q Consensus        81 kk~~~~e~~l~q~-i~Kl~e~l~kl-----~~~n~e----~e~~~l----m~~~l~~~~~l~~Ls~-~eL~~L~~~Le~~  145 (233)
                      ++.++.+.++... +..+.......     ...+.+    ..+..+    ..+....+..+.+++. .+|..++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            8888777766533 11111100000     001111    111111    0111222556788888 7788888777777


Q ss_pred             HHHHHHH
Q 040642          146 IREICRR  152 (233)
Q Consensus       146 lk~ir~R  152 (233)
                      +..++.+
T Consensus       161 ~~~~~~~  167 (195)
T KOG0014|consen  161 LHNSRSS  167 (195)
T ss_pred             hcCCCCC
Confidence            7655544

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=3.8e-32  Score=195.49  Aligned_cols=81  Identities=46%  Similarity=0.778  Sum_probs=76.2

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChhhhhhh
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKSK   81 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~~~~~k   81 (233)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.|.+||++. ++.+|++|..++..++.+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~   79 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALERKK   79 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhhhhc
Confidence            8999999999999999999999999999999999999999999999999999999998765 999999999998887766


Q ss_pred             cc
Q 040642           82 KM   83 (233)
Q Consensus        82 k~   83 (233)
                      +.
T Consensus        80 ~~   81 (83)
T cd00266          80 KA   81 (83)
T ss_pred             cC
Confidence            54

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=7.5e-31  Score=186.06  Aligned_cols=73  Identities=37%  Similarity=0.646  Sum_probs=67.3

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChh
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPE   76 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~   76 (233)
                      ||+||+|++|+|+.+|++||+|||.||||||+|||+||||+||+|||||+|+.+. |++ +++++||+||+..+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-f~s-~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-FSS-PSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-ecC-CCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999998766 444 568999999988643

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=8.5e-30  Score=170.79  Aligned_cols=58  Identities=40%  Similarity=0.676  Sum_probs=57.0

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCC
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWP   59 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~p   59 (233)
                      ||+||+|++|+|++.|++||+|||.||||||+||||||||+||+|||||+|+.+.|||
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS   58 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence            8999999999999999999999999999999999999999999999999999999986

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=2.7e-29  Score=168.53  Aligned_cols=59  Identities=44%  Similarity=0.784  Sum_probs=57.2

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCC
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS   60 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps   60 (233)
                      ||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|+.+.+||+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999998863

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.91  E-value=1.8e-26  Score=149.91  Aligned_cols=51  Identities=59%  Similarity=0.877  Sum_probs=45.0

Q ss_pred             eeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCC
Q 040642            9 AYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPS   60 (233)
Q Consensus         9 ~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps   60 (233)
                      |+|+|++.|++||+|||.||||||+||||||||+||+|||||+|+.+. |||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~-f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT-FPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE-EES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE-ecC
Confidence            689999999999999999999999999999999999999999998755 764

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.73  E-value=8.4e-19  Score=149.52  Aligned_cols=66  Identities=33%  Similarity=0.485  Sum_probs=59.3

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhh
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLS   69 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~   69 (233)
                      ||+||+|.||+|+..|.+||+|||.|+||||+|||||+|.+|-|+|.|.+|-.|.|  +.+..+.||.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTF--aTpKLep~i~  128 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATPKLEPMIT  128 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEe--cccccccccc
Confidence            79999999999999999999999999999999999999999999999999987765  4555555554

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.35  E-value=3e-13  Score=120.54  Aligned_cols=59  Identities=34%  Similarity=0.502  Sum_probs=56.1

Q ss_pred             CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCC
Q 040642            1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWP   59 (233)
Q Consensus         1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~p   59 (233)
                      |||+||.|.+|+|+.+|.|||+||+.||+|||.||++|+|.+|.++|.|..|..+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t  139 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT  139 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC
Confidence            78999999999999999999999999999999999999999999999999999776643

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=97.98  E-value=3.1e-05  Score=57.43  Aligned_cols=58  Identities=22%  Similarity=0.330  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040642           88 SFLRQRIAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETL  156 (233)
Q Consensus        88 ~~l~q~i~Kl~e~l~kl~~~n~e~e~~~lm~~~l~~~~~l~~Ls~~eL~~L~~~Le~~lk~ir~R~~~L  156 (233)
                      .++..++.+++.+++.++...     ++++      |++|++||++||..|+..|+.+|+.||.|+.++
T Consensus        15 e~~~~e~~~L~~~~~~L~~~~-----R~~~------GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~   72 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKEL-----RHLM------GEDLESLSLKELQQLEQQLESALKRVRSRKDQL   72 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----hccc------cccccccchHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            567778888888887777543     4565      556999999999999999999999999997665

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide)

Probab=82.80  E-value=0.69  Score=20.51  Aligned_cols=9  Identities=56%  Similarity=1.700  Sum_probs=7.9

Q ss_pred             CCCCCCCCC
Q 040642          225 NLWPNPFYP  233 (233)
Q Consensus       225 ~~~~~~~~~  233 (233)
                      .|||-|++|
T Consensus         3 pfw~ppiyp   11 (12)
T PF08248_consen    3 PFWPPPIYP   11 (12)
T ss_pred             ccCCCCccc
Confidence            589999997

Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=82.36  E-value=15  Score=29.96  Aligned_cols=63  Identities=10%  Similarity=0.179  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040642           89 FLRQRIAKAYEQLKKQRKDNR--EKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRRMETLNNIAT  161 (233)
Q Consensus        89 ~l~q~i~Kl~e~l~kl~~~n~--e~e~~~lm~~~l~~~~~l~~Ls~~eL~~L~~~Le~~lk~ir~R~~~L~~~~~  161 (233)
                      -|...|.++.+++..++...+  +.|++.|          -..|++++++.=...|..-.+..+.|+..++....
T Consensus        83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L----------~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~  147 (201)
T KOG4603|consen   83 VLDGKIVALTEKVQSLQQTCSYVEAEIKEL----------SSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN  147 (201)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            455677778888777776655  3444443          24789999999999999999999999998876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-15
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	6e-15
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-14
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-13
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	6e-13

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 67.9 bits (166), Expect = 2e-15
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 1  MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSP 50
            R K+K+ +I N   R  TF KRK G++KK  EL TL G  V  ++ S 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASE 59

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 67.2 bits (164), Expect = 6e-15
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 1  MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSP 50
            R K+K+ +I N   R  TF KRK G++KK  EL TL G  V  ++ S 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASE 58

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 1  MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSP 50
            R+K+++ +I N + R  TF KRK G++KK  EL  L G  V  ++ S 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSE 65

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 3  RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
          RKK+++  I ++  R+ TF KRK GL+KK  EL  LC  ++  IIF+  +   + + S  
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAST- 59

Query: 63 GVQRVLSRFKKMPEMEKS 80
           + +VL ++ +  E  +S
Sbjct: 60 DMDKVLLKYTEYNEPHES 77

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 61.7 bits (150), Expect = 6e-13
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 3  RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
          RKK+++  I ++  R+ TF KRK GL+KK  EL  LC  ++  IIF+  +   +   +  
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY--AST 59

Query: 63 GVQRVLSRFKKMPEMEKSKKMVSQDSFLRQR 93
           + +VL ++ +  E  +S+        L ++
Sbjct: 60 DMDKVLLKYTEYNEPHESRTNSDIVEALNKK 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.97
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.97
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.97
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	82.31

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=2.9e-36  Score=216.52  Aligned_cols=78  Identities=33%  Similarity=0.587  Sum_probs=72.3

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChhhhhhh
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKSK   81 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~~~~~k   81 (233)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++++ |+| ++|+.||+||+..++....+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-f~s-~~~~~il~rY~~~~~~~~~~   78 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNEPHESR   78 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHCCSCCCEE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-eCC-CCHHHHHHHHHhcCcccccC
Confidence            8999999999999999999999999999999999999999999999999999887 666 68999999999987765444

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.3e-35  Score=206.89  Aligned_cols=73  Identities=34%  Similarity=0.608  Sum_probs=67.7

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChh
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPE   76 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~   76 (233)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+||||++|++++ |+| ++++.||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-~~s-~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-CCC-CCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999887 665 679999999988654

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.97  E-value=3.3e-34  Score=209.22  Aligned_cols=76  Identities=25%  Similarity=0.423  Sum_probs=69.5

Q ss_pred             CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChhhh
Q 040642            1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEME   78 (233)
Q Consensus         1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~~~   78 (233)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++++ |+| +++..||++|.....++
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~s-ps~~~il~r~~G~~lw~   91 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-FST-PKFEPIVTQQEGRNLIQ   91 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EEC-TTTTHHHHSHHHHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-ecC-CCHHHHHHHhhCCcHHH
Confidence            89999999999999999999999999999999999999999999999999999887 544 67999999997754443

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.97  E-value=1.9e-33  Score=202.65  Aligned_cols=71  Identities=31%  Similarity=0.431  Sum_probs=66.6

Q ss_pred             CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhcc
Q 040642            1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKK   73 (233)
Q Consensus         1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~   73 (233)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++++ |++ ++++.||++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-f~s-~~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT-RKLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-EEC-GGGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-ecC-CCHHHHHhhhcc
Confidence            89999999999999999999999999999999999999999999999999999877 554 689999997755

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.97  E-value=6.7e-33  Score=203.59  Aligned_cols=71  Identities=31%  Similarity=0.424  Sum_probs=66.0

Q ss_pred             CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhcc
Q 040642            1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKK   73 (233)
Q Consensus         1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~   73 (233)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+|||||||++|++++ |+ +++++.||+++..
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~-s~~~~~vi~~~~G   79 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FA-TRKLQPMITSETG   79 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-EE-CGGGGGGTSSHHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-ec-CccHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999887 54 4689999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-19
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	8e-18
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-17

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (190), Expect = 2e-19
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 3  RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
          RKK+++  I ++  R+ TF KRK GL+KK  EL  LC  ++  IIF+   ++   + S  
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSS-NKLFQYAST- 59

Query: 63 GVQRVLSRFKK 73
           + +VL ++ +
Sbjct: 60 DMDKVLLKYTE 70

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.2 bits (180), Expect = 8e-18
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 3  RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
          R+K+++ +I N + R  TF KRK G++KK  EL  L G  V  ++ S        + +P 
Sbjct: 4  RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSE-TGLVYTFSTP- 61

Query: 63 GVQRVLSRFKKMPEMEK 79
            + ++++ +    ++ 
Sbjct: 62 KFEPIVTQQEGRNLIQA 78

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 1e-17
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 3  RKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPL 62
          R K+K+ +I N   R  TF KRK G++KK  EL TL G  V  ++ S        + +  
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASE-TGHVYTFATR- 61

Query: 63 GVQRVLSRFKKMPEMEK 79
           +Q +++       ++ 
Sbjct: 62 KLQPMITSETGKALIQT 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.97
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.97

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=202.74  Aligned_cols=70  Identities=34%  Similarity=0.622  Sum_probs=66.2

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhcc
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKK   73 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~   73 (233)
                      ||+||+|++|+|+..|+|||+|||.||||||+||||||||+||+|||||+|+.++ |+| +++++||+||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~-f~s-~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEE-eeC-CCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999666 765 689999999975

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.8e-34  Score=201.92  Aligned_cols=77  Identities=26%  Similarity=0.424  Sum_probs=70.1

Q ss_pred             CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChhhhhh
Q 040642            2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKS   80 (233)
Q Consensus         2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~~~~~   80 (233)
                      ||+||+|++|+|++.|+|||+|||.||||||+||||||||+||||||||+|+.++ | ++++|+.||+||......++.
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~-f-~sp~v~~vl~r~~~~~~~~~~   79 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-F-STPKFEPIVTQQEGRNLIQAC   79 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-E-ECTTTTHHHHSHHHHHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEe-c-cCCCHHHHHHHHhcccHHHHc
Confidence            8999999999999999999999999999999999999999999999999999776 4 557899999999876555443

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.8e-34  Score=200.11  Aligned_cols=72  Identities=31%  Similarity=0.403  Sum_probs=67.4

Q ss_pred             CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccC
Q 040642            1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKM   74 (233)
Q Consensus         1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~   74 (233)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||+|||||+|+.+.|  ++++++.|+++|...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f--~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF--ATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEE--ECGGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEe--eCCCHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999998774  458899999999753