Citrus Sinensis ID: 040646

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MSDSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHHHccEEcccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHEEEEEEEHEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHEcHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcEEEEEHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
msdstpiltqsdlesrpslgeTIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVftdaeptwhctddscngvsnlcqlpknswswdlQAHTSIISEWDLECASSLikglpassffMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELvgkkrrgqvgsigffcftlgflslpaIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYygmplglgsLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGlfviglpetrdtqlsdtmdEEEYKERAAAAGFNRLV
Flexible Loop (DISEMBL)
msdstpiltqsdlesrpsLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSistsenqrSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKEraaaagfnrlv
Low Complexity Region (SEG)
MSDSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNmlflsclmmsvscllTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV
Disordered region (IsUnstruct)
*********************TIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLP*****************************
Disordered Region (DISOPRED)
*********************TIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLI*********************KILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTM******************
Disordered Region (DISEMBL)
*************ESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV
Disordered Region (DISPRO)
***************RPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYK************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	509	2.2.26 [Sep-21-2011]
Q9SA38	518	Organic cation/carnitine	yes	no	0.974	0.957	0.666	0.0
O64515	527	Organic cation/carnitine	no	no	1.0	0.965	0.600	0.0
Q9SAK7	515	Organic cation/carnitine	no	no	0.974	0.963	0.417	1e-112
Q9SA36	521	Organic cation/carnitine	no	no	0.974	0.952	0.411	1e-111
Q9CAT6	539	Organic cation/carnitine	no	no	0.937	0.884	0.404	2e-92
Q9LHQ6	526	Organic cation/carnitine	no	no	0.966	0.935	0.342	1e-74
O76082	557	Solute carrier family 22	yes	no	0.793	0.725	0.299	7e-42
Q9WTN6	564	Solute carrier family 22	yes	no	0.811	0.732	0.290	4e-41
O75751	556	Solute carrier family 22	no	no	0.787	0.721	0.295	7e-41
O88446	551	Solute carrier family 22	yes	no	0.785	0.725	0.287	5e-40

>sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/516 (66%), Positives = 411/516 (79%), Gaps = 20/516 (3%)

Query: 1   MSDST-PILT-----QSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFI 54
           M+DST P+L+     +S+L    SL ETIERCIGDF  AQ +QA LVS AWFFDAQQTFI
Sbjct: 1   MADSTRPLLSDFNSSESNLPPPRSLEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTFI 60

Query: 55  SVFTDAEPTWHC-----TDDSCN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108
           +VFTD++P WHC      D  CN   SNLC LP  +WSWDL  H SIISEW L+CA S +
Sbjct: 61  TVFTDSQPMWHCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGSFL 120

Query: 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR 168
           KG PASSFF+GCL GGL L+TLADSSLGRKNML LSCL+MS+S +LT FST++W+Y+ LR
Sbjct: 121 KGFPASSFFLGCLIGGLALSTLADSSLGRKNMLLLSCLIMSLSSMLTAFSTSIWVYAFLR 180

Query: 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRI 228
           F+NG GRATIGTCA+VLSTELVGKK RGQVG++GFFCFTLGFLSLP + YIN G+SWR +
Sbjct: 181 FLNGCGRATIGTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPMLGYINEGNSWRNL 240

Query: 229 YLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF 288
           Y++TSIPT++YC LVR  VRESPRWL ++GRKEEAVSI++SI+++    ++ M F N+ F
Sbjct: 241 YVWTSIPTLIYCCLVRSFVRESPRWLIVKGRKEEAVSILQSIASN----AITMSFTNLCF 296

Query: 289 E----QETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL 344
           E    Q   N D+Y A+KILV K W+ RRL A MV GFGIGMVYYGMPL L +L+FNLYL
Sbjct: 297 EVENDQSKSNPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNLNFNLYL 356

Query: 345 SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404
            V FNALSE PA LITFF I K+ R+ +L+GFT +SG+ S L  V+G+   S++I LELV
Sbjct: 357 GVVFNALSEFPAFLITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGSLQIVLELV 416

Query: 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGI 464
           +FFSACTAF++ LIYT+E+FPTCVRNSAISMVRQALVFGGVFSPV+VAAGR+N F SYG+
Sbjct: 417 SFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQFWSYGL 476

Query: 465 FGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERA 500
           FGL+IGLCGLFV GLPETR + L DTMDEEEYK  A
Sbjct: 477 FGLIIGLCGLFVFGLPETRGSVLCDTMDEEEYKTLA 512

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|O64515|OCT2_ARATH Organic cation/carnitine transporter 2 OS=Arabidopsis thaliana GN=OCT2 PE=2 SV=1

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/526 (60%), Positives = 416/526 (79%), Gaps = 17/526 (3%)

Query: 1   MSDST-PILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTD 59
           M++ T P+LT S+  S  SL +TIE  IG F  AQ +QA LVS +  FDAQQTFISVFTD
Sbjct: 1   MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTD 60

Query: 60  AEPTWHCTDDS--CN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSF 116
           +EPTWHCTD +  C+  +SN+C LPK +WSWD   H S+ISEW L+CA S +KGLP SSF
Sbjct: 61  SEPTWHCTDSNSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGSFVKGLPESSF 120

Query: 117 FMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA 176
           F+GCL GGL+L+TLADSSLGRKNMLFLSCL+M++S +LT+FS N+W+Y+VLRF+NGFGRA
Sbjct: 121 FVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRA 180

Query: 177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPT 236
           TIGTCA+VLSTELVGKK RG+VG + FF F LGFLSLP +AY+NRGSSWR +Y +TSIPT
Sbjct: 181 TIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPT 240

Query: 237 ILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQR-----SLIMDFNNVSFEQE 291
           I+YC+LVRF V ESPRWLF++GR+EEA+SI+K +++  +       ++ M F+++ FE++
Sbjct: 241 IIYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSLPFEED 300

Query: 292 ----TWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVT 347
               + NV++++ +K+LVEK+WAL+RLSA+M   FGIG+VYYGMPL L +L FN+YLS  
Sbjct: 301 EEKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAA 360

Query: 348 FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI----WTSVEIGLEL 403
           FNAL +LPA+LIT FL+ KL R+++L+GFT + GV SVL   +  +      ++++ LEL
Sbjct: 361 FNALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHGALQLALEL 420

Query: 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYG 463
           +++FSAC+AF++ +IYT+ELFPTCVRNSAI+M RQALV GGVFSP++VAAGR+N F S+G
Sbjct: 421 ISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFG 480

Query: 464 IFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV 509
           +FGL IGL GLF +GLPETR + L DTMDEEE K+R +    N ++
Sbjct: 481 LFGLAIGLLGLFAVGLPETRGSDLCDTMDEEECKDRRSKVAVNNVI 526

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK7|OCT5_ARATH Organic cation/carnitine transporter 5 OS=Arabidopsis thaliana GN=OCT5 PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/512 (41%), Positives = 321/512 (62%), Gaps = 16/512 (3%)

Query: 1   MSDS------TPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFI 54
           M+DS      T I    D  S  +  + +E+ + DF  +Q +Q  LV +A  FD+QQ FI
Sbjct: 1   MADSLAPLLPTHIEEDEDTSSPLTFDKILEKSLSDFGFSQFLQIVLVGLALTFDSQQIFI 60

Query: 55  SVFTDAEPTWHCTDDS-CN-GVSNLCQLPKNSWSWDLQ-AHTSIISEWDLECASSLIKGL 111
           +VFTDA PTWHC D + CN   +++C++P+++W WD      S+ISE+DLEC+SS ++ L
Sbjct: 61  TVFTDAYPTWHCLDHTICNPATTDICKIPRSAWDWDGGFKGKSVISEFDLECSSSFLRSL 120

Query: 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171
           P+S+F++G + GG++LA + D SLGRK +LF S   MS++ +    S+N+WIYS L+F+ 
Sbjct: 121 PSSTFYVGSIVGGVVLAMIPDGSLGRKQLLFFSSFAMSLTGISIFLSSNIWIYSFLKFVI 180

Query: 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLY 231
           GF R+  GT A+VL +E +  K R +   + F  F LGF+SL  IAY+ R +SW+ +YL 
Sbjct: 181 GFARSQTGTYALVLISERISTKWRPRATMVPFTLFVLGFMSLSGIAYLVRHASWKVLYLC 240

Query: 232 TSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQE 291
           TSIP  ++ I + F   ESPRWL ++G+ +EA+ ++K IS +   R  +   ++    +E
Sbjct: 241 TSIPAGIHSIFIYFFALESPRWLHLEGKNKEAIEVLKRISPA--NRGYLESVSSRLRPKE 298

Query: 292 TWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNAL 351
           T       +IK L   KWA RR++ +M+  FG+GM YYG+PL +  +  N+Y+S   NA+
Sbjct: 299 TLEQTSSYSIKDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVNIYMSEALNAM 358

Query: 352 SELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM---GKIWTSVEIGLELVAFFS 408
            ELP  ++T  L+ +  R+SS+L   ++ G   VLC VM   G+  T +   LEL +FF 
Sbjct: 359 VELPTFVVTPILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYGR--TKIAFALELGSFFC 416

Query: 409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLV 468
           A   F+L+ IY +ELFPTCVRNSA  M+RQALV GG   P++ + GR    LS+ +FG  
Sbjct: 417 ARIGFNLMAIYLVELFPTCVRNSATMMLRQALVVGGACCPLIASLGRNVPSLSFAVFGFA 476

Query: 469 IGLCGLFVIGLPETRDTQLSDTMDEEEYKERA 500
           +   GLF + LPET+   L DTM+E+E +++A
Sbjct: 477 MSGLGLFALLLPETKGLSLCDTMEEQEQRDQA 508

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA36|OCT6_ARATH Organic cation/carnitine transporter 6 OS=Arabidopsis thaliana GN=OCT6 PE=2 SV=1

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/506 (41%), Positives = 321/506 (63%), Gaps = 10/506 (1%)

Query: 1   MSDSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDA 60
           ++D + +  ++ LE+  +  + +E+ + DF   Q  Q  LV +A  FDAQQ FI+V+TDA
Sbjct: 13  LTDDSGVNEKTRLEAL-TFDKIVEQSLSDFGFWQFFQISLVGLALLFDAQQIFITVYTDA 71

Query: 61  EPTWHCTDDS-CN-GVSNLCQLPKNSWSWDLQAH-TSIISEWDLECASSLIKGLPASSFF 117
            PTWHC + + C+   S++C+LP+++W WD  +   S+ISE+ LEC+SSL++G+P+S+F+
Sbjct: 72  YPTWHCLNHTICDPSASDICKLPRSAWEWDGGSQGKSVISEFGLECSSSLLRGMPSSAFY 131

Query: 118 MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRAT 177
           +G + GG  LA + D SLGRK ++  S   MS++ +  IFSTN+WIY+ L+FI GF R+ 
Sbjct: 132 IGAIVGGFFLALIPDDSLGRKKLVLFSTFAMSITSISVIFSTNVWIYTFLKFIIGFSRSQ 191

Query: 178 IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTI 237
             + A+VL +E V  + R +   I F  F LGF+SL  IA++ + SSWR +YLYTS+P +
Sbjct: 192 TWSYALVLISERVSTRWRPRATMIPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAV 251

Query: 238 LYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDL 297
            YCI +     ESPRWL +QG+ +EA+ ++  +S  E +  L    + +  +QE +    
Sbjct: 252 FYCIFLYLFALESPRWLHMQGKDKEAIDVLTKMSPKE-KAYLESVVSKLPLKQENFEQAP 310

Query: 298 YSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPAS 357
             +IK    +KWA RR+  +M+  FG+G+ YYG+PL    +  N+YLS T NAL ELP  
Sbjct: 311 TYSIKDFFFRKWAFRRILVVMIIMFGLGISYYGVPLAARDIDVNIYLSETLNALVELPTF 370

Query: 358 LITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV---MGKIWTSVEIGLELVAFFSACTAFS 414
           +IT  L+ +  R+SS+L  T++ G   VLC V   +GK  T +    EL  FF A   F+
Sbjct: 371 VITPILLERFNRRSSVLVNTLLGGASGVLCFVLSILGK--TEIAFAFELGTFFCARIGFN 428

Query: 415 LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGL 474
           L+ ++ +E+FPTCVR+SA  M RQALV GG   P++ + GR    +S+ IFG+ +   G+
Sbjct: 429 LMAVFMVEMFPTCVRSSATMMFRQALVVGGACCPLIASIGRYIPSVSFAIFGIAMSGLGM 488

Query: 475 FVIGLPETRDTQLSDTMDEEEYKERA 500
           FV+ LPET+   L D+M+E+E +++A
Sbjct: 489 FVLILPETKGLSLCDSMEEQEKRDQA 514

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAT6|OCT1_ARATH Organic cation/carnitine transporter 1 OS=Arabidopsis thaliana GN=OCT1 PE=2 SV=1

 Score =  340 bits (871), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/492 (40%), Positives = 294/492 (59%), Gaps = 15/492 (3%)

Query: 18  SLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWH--CTDDSCNGVS 75
           ++ E IE+ IG    AQ++ A LVSIAW FDAQ T IS+F+DA+P      T     G S
Sbjct: 44  TVDEVIEQHIGALGFAQILHALLVSIAWIFDAQTTLISIFSDAQPAARLLATGAIVEGAS 103

Query: 76  NLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL 135
            LC L    W W      +++SEW+L C    +  +P++ FF+G L G  +   LADS  
Sbjct: 104 -LCGLASGEWEWIGPKSDTVVSEWNLICQHKFLVAVPSTLFFIGSLFGSGVYGYLADSWF 162

Query: 136 GRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRR 195
           GRK  L LSC++  V+     FS N+W+Y+ LRF NGF R+ IG+C IVL+TE+VGKK R
Sbjct: 163 GRKKTLLLSCVLTFVTAFAISFSPNVWVYAFLRFANGFFRSGIGSCCIVLATEIVGKKWR 222

Query: 196 GQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLF 255
           GQVG  GFF FTLGFLSLP +AY+ R  SWR +Y   S   + Y + +     ESPRWL 
Sbjct: 223 GQVGQYGFFFFTLGFLSLPLMAYLER-KSWRNLYRIISFLPLGYAVCLLPFAYESPRWLL 281

Query: 256 IQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLS 315
           ++GR +EA+ ++K ++   N + L  D + V    E    D  S+ +   + KWA++R+ 
Sbjct: 282 VKGRNKEAMVVLKKLARL-NGKQLPADLSLVDPIPE--RDDQTSSSEKFWKTKWAVKRII 338

Query: 316 AIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLG 375
            +M+ GFG G VYYG+ L   +L+FNLYL+V  NAL E PA  I  FL+G + R+     
Sbjct: 339 MVMMAGFGSGFVYYGIQLNAENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSN 398

Query: 376 FTIMSGVCSVLCVVMG--------KIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTC 427
            + ++G   +LC V+          +   +++ +E V F ++ TA+ +L +Y +ELFPT 
Sbjct: 399 SSYLAGFACLLCAVLSIHRVIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTN 458

Query: 428 VRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQL 487
           VRN+A+S++RQA + G   +P+LVA GR++  +S+ +FG+   L G+  + L ETR+  L
Sbjct: 459 VRNTAVSLLRQAFMLGASAAPLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPL 518

Query: 488 SDTMDEEEYKER 499
            +T+ ++   E 
Sbjct: 519 YETLAQQGKAEE 530

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Regulates lateral root development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHQ6|OCT4_ARATH Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1

 Score =  281 bits (718), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 267/511 (52%), Gaps = 19/511 (3%)

Query: 3   DSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEP 62
           +  P+  +++ E R  + E ++R  G+F   QL    L  IAW  +A  T + +F D EP
Sbjct: 18  EKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAWALEAFHTMVMIFADQEP 77

Query: 63  TWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLA 122
            W C    C   S  C+L  +SW W     +S +SEW L C      GL  + FF GC+ 
Sbjct: 78  EWRCVGSDCRVGSLNCELDPSSWEWTAGKGSSTVSEWGLICGDKYKVGLVQALFFAGCMI 137

Query: 123 GGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCA 182
           G  +   L+DS LGRK  L + C++ ++  + T FS N W Y VLRF+ GF    +G  A
Sbjct: 138 GAGVFGHLSDSKLGRKGSLTVVCIINAIFGIATAFSPNYWTYVVLRFLTGFSTGGVGLTA 197

Query: 183 IVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCIL 242
            VL+TE +G  +RG  G   F+ F+ G   L  IAY+ R  SWR +++ +S+P++L+ ++
Sbjct: 198 FVLATEPIGPSKRGVAGMSTFYFFSAGIAVLSGIAYVFR--SWRELFIVSSLPSLLFLLI 255

Query: 243 VRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQR-----SLIMDFNNVSFEQETWNVDL 297
           V   + ESPRW  ++G+ +EA+ ++ SI+ +  +      +L +D ++V       N  +
Sbjct: 256 VIPFISESPRWYLVRGKVDEAMKLMHSIAKTNGRHIPAGVTLALD-DDVENNNGERNTAV 314

Query: 298 YSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPAS 357
             ++K ++       RL   +   F + +VYYG+ L +G+L  NLYL+V  NA+SE+PA 
Sbjct: 315 EGSLKDVILSPLMRMRLVISVAISFTVSIVYYGLSLNVGNLKTNLYLNVFVNAVSEMPAF 374

Query: 358 LITFFLIGKLKRKSSLLGFTIMSGV-CSVLCVVMGK-IWTSVEIGLELVAFFSACTAFSL 415
            IT  L+ K  RK   +G    S V C V   V G   W SV +   ++  F     ++L
Sbjct: 375 AITAVLLDKYGRKPLSIGTQWFSCVFCLVGFSVWGAGPWKSVRMVSGVLGIFGMAGTYNL 434

Query: 416 LLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLF 475
           L IY  ELFPT VRN+A+    QA   G + +P +V  G +  F  + + GLV G    +
Sbjct: 435 LFIYIAELFPTVVRNAALGCATQAAQMGAILAPFVVVLGEELPFGVFAVCGLVGGGLAFY 494

Query: 476 VIGLPETRDTQLSDTM------DEEEYKERA 500
              LPET +  L DTM      + E  +ER 
Sbjct: 495 ---LPETLNKPLYDTMFGMHEAESESNRERG 522

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.

Arabidopsis thaliana (taxid: 3702)

>sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1

 Score =  172 bits (435), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 221/434 (50%), Gaps = 30/434 (6%)

Query: 76  NLCQLPKNS----WSWDLQAH-TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATL 130
           +L QL + S    W +    + ++I++EW+L C       L  S FF+G L G  I   L
Sbjct: 104 DLGQLEQESCLDGWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQL 163

Query: 131 ADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV 190
           +D   GRKN+LF++  M +    L IFS N  ++ VL  + G G+ +    A VL TE++
Sbjct: 164 SDR-FGRKNVLFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEIL 222

Query: 191 GKKRRGQVGSIG---FFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLV 247
           GK  R    ++G   F+ F  G++ LP  AY  R   WR + +  ++P +L C+ + + +
Sbjct: 223 GKSVRIIFSTLGVCIFYAF--GYMVLPLFAYFIR--DWRMLLVALTMPGVL-CVALWWFI 277

Query: 248 RESPRWLFIQGRKEEAVSIIKSISTSEN--QRSLIMDFNNV----SFEQETWNV-DLYSA 300
            ESPRWL  QGR EEA  II+  + +      S I D + +    S +Q++ N+ DL   
Sbjct: 278 PESPRWLISQGRFEEAEVIIRKAAKANGIVVPSTIFDPSELQDLSSKKQQSHNILDLL-- 335

Query: 301 IKILVEKKWALRRLSAI-MVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLI 359
                 + W +R ++ + ++    I + Y+G+ L   +L  +++++   +A+ E+PA ++
Sbjct: 336 ------RTWNIRMVTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVL 389

Query: 360 TFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIY 419
            + L+  L R+ S+     + G   +   ++      +   L +V  F    AFS++ +Y
Sbjct: 390 AWLLLQYLPRRYSMATALFLGGSVLLFMQLVPPDLYYLATVLVMVGKFGVTAAFSMVYVY 449

Query: 420 TLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGL 479
           T EL+PT VRN  + +   A   G + SP  V  G  + FL Y + G +  L  +  + L
Sbjct: 450 TAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFL 509

Query: 480 PETRDTQLSDTMDE 493
           PE+  T L DT+D+
Sbjct: 510 PESFGTPLPDTIDQ 523

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Homo sapiens (taxid: 9606)

>sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1

 Score =  169 bits (429), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 214/430 (49%), Gaps = 17/430 (3%)

Query: 83  NSWSWDLQAH-TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNML 141
           + W +D     ++I++EWDL C       L  S F++G L G  I   L+D   GRKN+L
Sbjct: 115 DGWEYDKDIFLSTIVTEWDLVCKDDWKAPLTTSFFYVGVLLGSFISGQLSDR-FGRKNIL 173

Query: 142 FLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSI 201
           FL+  M +    + +FS N  ++++L  + G G  +    A VL TE++ K  R    ++
Sbjct: 174 FLTMAMHTGFSFIQVFSVNFEMFTLLYTLVGMGHISNYVAAFVLGTEMLSKSVRIIFATL 233

Query: 202 G---FFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQG 258
           G   FF F  GF+ LP  AY  R   WRR+ L  ++P +L C  + + + ESPRWL  QG
Sbjct: 234 GVCIFFAF--GFMVLPLFAYFIR--EWRRLLLAITLPGVL-CGALWWFIPESPRWLISQG 288

Query: 259 RKEEAVSIIKSISTSEN--QRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSA 316
           R +EA  II+  +        S I D +  +  Q+  +    S     + +   +R L+ 
Sbjct: 289 RIKEAEVIIRKAAKINGIVAPSTIFDPSETNKLQDDSSKKPQSHHIYDLVRTPNIRILTI 348

Query: 317 I-MVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLG 375
           + ++    I + Y+G+ L   +L+ N+Y++    A  E+PA ++ + L+  + R+ S+ G
Sbjct: 349 MSIILWLTISVGYFGLSLDTPNLNGNIYVNCFLLAAVEVPAYVLAWLLLQHVSRRYSMAG 408

Query: 376 FTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISM 435
              + G   +L  ++      +   L +V  F   +A+S++ +YT EL+PT VRN  + +
Sbjct: 409 SLFLGGSVLLLVQLVPSDLHYLSTTLVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGV 468

Query: 436 VRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDE-- 493
              A   G + SP  V  G  +  L Y + G +  L  +  +  PE+    L +T+DE  
Sbjct: 469 SSTASRLGSILSPYFVYLGAYDRRLPYILMGSLTILTAIITLFFPESSGVSLPETIDEMQ 528

Query: 494 --EEYKERAA 501
             ++ K+R +
Sbjct: 529 KVKKLKQRQS 538

Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746.

Mus musculus (taxid: 10090)

>sp|O75751|S22A3_HUMAN Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1

 Score =  169 bits (427), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 220/419 (52%), Gaps = 18/419 (4%)

Query: 82  KNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNML 141
           +  W +  QAH++I+SE+DL C ++ +  L  +   +G L G   L   AD   GR  + 
Sbjct: 128 RGGWRYA-QAHSTIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADR-YGRIVIY 185

Query: 142 FLSCLMMSVSCLLTIFSTNMWIYSVLRFING-FGRATIGTCAIVLSTELVGKKRRGQVGS 200
            LSCL + V+ ++  F+ N  ++ + RF+ G FG+ T  TC +++ TE+VG K+R  VG 
Sbjct: 186 LLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIV-TEIVGSKQRRIVGI 244

Query: 201 IGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK 260
           +    FTLG + LP IAY     +W+ I L  ++P+ L+ +L  ++V ESPRWL  + + 
Sbjct: 245 VIQMFFTLGIIILPGIAYFI--PNWQGIQLAITLPSFLF-LLYYWVVPESPRWLITRKKG 301

Query: 261 EEAVSIIKSISTSENQRSLIMDFNNVSF-EQETWNVDLYSAIKILVEKKWALRRLSAIMV 319
           ++A+ I++ I+   N + L  +++ ++  ++E  N      ++    +K  L     +M 
Sbjct: 302 DKALQILRRIAKC-NGKYLSSNYSEITVTDEEVSNPSFLDLVRTPQMRKCTL----ILMF 356

Query: 320 TGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIM 379
             F   +VY G+ + LG +  NLY+    + + ELP +L+    I +L R+       I+
Sbjct: 357 AWFTSAVVYQGLVMRLGIIGGNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIV 416

Query: 380 SGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQA 439
           +GV  ++   + +    +   +  +       AF ++ +   EL+PT +RN  +S+    
Sbjct: 417 AGVACLVTAFLPEGIAWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGL 476

Query: 440 LVFGGVFSPVL---VAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEE 495
             FGG+ +P L   +AA      L   IFG++  +CG  V+ LPET+   L +T+D+ E
Sbjct: 477 CDFGGIIAPFLLFRLAAVWLE--LPLIIFGILASICGGLVMLLPETKGIALPETVDDVE 533

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Homo sapiens (taxid: 9606)

>sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus norvegicus GN=Slc22a3 PE=2 SV=1

 Score =  166 bits (419), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 218/418 (52%), Gaps = 18/418 (4%)

Query: 83  NSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLF 142
             W + ++ H++I+S++DL C ++ +  L  +   +G LAG   L   AD   GR  +  
Sbjct: 124 GDWRY-VETHSTIVSQFDLVCGNAWMLDLTQAILNLGFLAGAFTLGYAADR-YGRLIVYL 181

Query: 143 LSCLMMSVSCLLTIFSTNMWIYSVLRFING-FGRATIGTCAIVLSTELVGKKRRGQVGSI 201
           +SC  + ++ ++  F+ N  ++ + RF+ G FG+    TC +++ TE+VG K+R  VG +
Sbjct: 182 ISCFGVGITGVVVAFAPNFSVFVIFRFLQGVFGKGAWMTCFVIV-TEIVGSKQRRIVGIV 240

Query: 202 GFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKE 261
               FTLG + LP IAY     SW+ I L  S+P+ L+ +L  ++V ESPRWL  + + E
Sbjct: 241 IQMFFTLGIIILPGIAYFT--PSWQGIQLAISLPSFLF-LLYYWVVPESPRWLITRKQGE 297

Query: 262 EAVSIIKSISTSENQRSLIMDFNNVSF-EQETWNVDLYSAIKILVEKKWALRRLSAIMVT 320
           +A+ I++ ++   N + L  +++ ++  ++E  N      ++    +K  L     +M  
Sbjct: 298 KALQILRRVAKC-NGKHLSSNYSEITVTDEEVSNPSCLDLVRTPQMRKCTL----ILMFA 352

Query: 321 GFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMS 380
            F   +VY G+ + LG +  NLY+    + L ELP +L+    I +L R+       I++
Sbjct: 353 WFTSAVVYQGLVMRLGLIGGNLYMDFFISGLVELPGALLILLTIERLGRRLPFAASNIVA 412

Query: 381 GVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL 440
           GV  ++   + +    +   +  +       AF ++ +   EL+PT +RN  +S+     
Sbjct: 413 GVSCLVTAFLPEGIPWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLC 472

Query: 441 VFGGVFSPVL---VAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEE 495
            FGG+ +P L   +AA      L   IFG++  +CG  V+ LPET+   L +T+++ E
Sbjct: 473 DFGGIIAPFLLFRLAAIWLE--LPLIIFGILASVCGGLVMLLPETKGIALPETVEDVE 528

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	509
224109096	502	predicted protein [Populus trichocarpa]	0.974	0.988	0.723	0.0
225462305	520	PREDICTED: solute carrier family 22 memb	0.986	0.965	0.682	0.0
359494670	527	PREDICTED: solute carrier family 22 memb	0.980	0.946	0.682	0.0
15219226	518	organic cation/carnitine transporter 3 [	0.974	0.957	0.666	0.0
297844562	518	hypothetical protein ARALYDRAFT_471835 [	0.974	0.957	0.655	0.0
255558398	480	sugar transporter, putative [Ricinus com	0.931	0.987	0.658	0.0
15219351	527	organic cation/carnitine transporter 2 [	1.0	0.965	0.600	0.0
297842719	526	hypothetical protein ARALYDRAFT_895842 [	1.0	0.967	0.609	0.0
225462303	526	PREDICTED: solute carrier family 22 memb	0.984	0.952	0.594	0.0
356508582	528	PREDICTED: LOW QUALITY PROTEIN: solute c	0.978	0.943	0.605	1e-179

>gi|224109096|ref|XP_002315082.1| predicted protein [Populus trichocarpa] gi|222864122|gb|EEF01253.1| predicted protein [Populus trichocarpa]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/502 (72%), Positives = 424/502 (84%), Gaps = 6/502 (1%)

Query: 1   MSDSTPIL-----TQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFIS 55
           ++DSTP+L       ++ +  PSL ETIERCIG+F  AQL+QA LVS AW FDAQQTFIS
Sbjct: 1   ITDSTPLLLSRPDPSNESKQPPSLDETIERCIGEFGLAQLLQAILVSFAWVFDAQQTFIS 60

Query: 56  VFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASS 115
           VFTDAEP WHCT DSC  VS++C LP+NSW+WD    TSIISEW LECASS+IKGLPASS
Sbjct: 61  VFTDAEPKWHCTSDSCTSVSDICHLPQNSWAWDSPKDTSIISEWGLECASSIIKGLPASS 120

Query: 116 FFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGR 175
           FFMGCL GGL+LATLADS LGRKN+LFLSCLMMS S L T+FS N+WIYS L+F+NG GR
Sbjct: 121 FFMGCLIGGLMLATLADSLLGRKNLLFLSCLMMSFSGLFTVFSNNIWIYSALKFVNGVGR 180

Query: 176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIP 235
           ATIGTCA+VLSTELVGK+ R QVG IGFFCFTLGFL+LPA AY+NRGSSWR +YL+TS+P
Sbjct: 181 ATIGTCALVLSTELVGKRWRSQVGVIGFFCFTLGFLTLPAFAYMNRGSSWRTLYLWTSVP 240

Query: 236 TILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNV 295
           TI Y ILV FLVRESPRWLF++GRKEEAV+I+KSI+T+     ++M F+N+ F +E+WNV
Sbjct: 241 TIFYSILVHFLVRESPRWLFVRGRKEEAVTILKSIATA-GSSGILMSFSNLEFGKESWNV 299

Query: 296 DLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELP 355
           D YSAIKIL++KKWA RRL  +M   FGIGMVYYGMPLGLG+LSFNLYLSVTFNALSELP
Sbjct: 300 DTYSAIKILLKKKWACRRLLTVMAVVFGIGMVYYGMPLGLGNLSFNLYLSVTFNALSELP 359

Query: 356 ASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSL 415
           ASL+TFFL+ KL RK SLL FT +SGVCS+L VVMG+   ++++GLELV+FF ACTAF++
Sbjct: 360 ASLVTFFLVDKLNRKDSLLVFTTLSGVCSILSVVMGETSANLQMGLELVSFFCACTAFNI 419

Query: 416 LLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLF 475
            LI+TLELFPTCVRNSAISM RQ+LVFGG+FSPVLVA G +N FLSYGIFG+VIG+CGLF
Sbjct: 420 SLIHTLELFPTCVRNSAISMARQSLVFGGMFSPVLVAVGSKNRFLSYGIFGMVIGICGLF 479

Query: 476 VIGLPETRDTQLSDTMDEEEYK 497
           VI LPETR   + DTMDEEEY 
Sbjct: 480 VIFLPETRGRTICDTMDEEEYN 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462305|ref|XP_002266025.1| PREDICTED: solute carrier family 22 member 3-like [Vitis vinifera]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/516 (68%), Positives = 415/516 (80%), Gaps = 14/516 (2%)

Query: 1   MSDSTPILTQSDL---------ESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQ 51
           M+D TP+L+QS L         +  PSL ET ER IGDF  AQL+QAFLVS AW FDAQQ
Sbjct: 1   MADPTPLLSQSHLADPEPMLIPKHLPSLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQ 60

Query: 52  TFISVFTDAEPTWHCTD---DSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108
           TFIS+FTDAEP WHCT+   + C  VSN+CQLPK SW+WD  A TSI+SEW L CA S+I
Sbjct: 61  TFISLFTDAEPPWHCTELGTELCTSVSNICQLPKGSWAWDRAADTSIVSEWTLVCAGSII 120

Query: 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR 168
           K LPASSFFMGC+ GGL+LATLADSSLGRKNMLF SCL+MS + +LTIFS N+WIYS  R
Sbjct: 121 KSLPASSFFMGCMVGGLVLATLADSSLGRKNMLFFSCLLMSATGILTIFSPNVWIYSGFR 180

Query: 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRI 228
           F++GFGRATIGTCAIVLSTELVGK+ R QVG  GFF FTLGFLSLPAIAY++RGSSWR +
Sbjct: 181 FLSGFGRATIGTCAIVLSTELVGKRWRSQVGVCGFFLFTLGFLSLPAIAYLSRGSSWRYL 240

Query: 229 YLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF 288
           YL+TS+P + YC+LV F VRESPRWL ++GRKEEAV+ +KSI  + N  S  + F+ + F
Sbjct: 241 YLWTSVPALSYCVLVHFFVRESPRWLLVRGRKEEAVATLKSIG-AVNNSSFTLSFSGLPF 299

Query: 289 E-QETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVT 347
           E +ET N+ L S I IL+EK+WALRRLSA+M  GFG+GMVYYGMPL LG+L FNLY +VT
Sbjct: 300 EDEETTNLHLCSVISILLEKRWALRRLSAVMTVGFGVGMVYYGMPLALGNLPFNLYWNVT 359

Query: 348 FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407
           FNALSELPASLI FF I +L RKSS+L FT+ SGVCS++CVVMG+ W S++IGLELV+FF
Sbjct: 360 FNALSELPASLIAFFFIERLNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFF 419

Query: 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGL 467
           S CTAF +LLIYT+ELFPTCVRNSA++MVRQALVFGGVF PV+V  G  N +LSYG+FG+
Sbjct: 420 STCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGVFCPVIVEIGMGNGYLSYGVFGV 479

Query: 468 VIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAA 503
           VI  CGLFV  LPET+   L DTM+EEE KERAA A
Sbjct: 480 VIISCGLFVGCLPETKGGTLCDTMEEEENKERAAVA 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494670|ref|XP_002265245.2| PREDICTED: solute carrier family 22 member 3-like [Vitis vinifera]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/513 (68%), Positives = 412/513 (80%), Gaps = 14/513 (2%)

Query: 1   MSDSTPILTQSDL---------ESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQ 51
           M+DSTP+L+QS           +  PSL ET ER IGDF  AQL+QAFLVS AW FDAQQ
Sbjct: 1   MADSTPLLSQSHPADPEPLLIPKHLPSLDETFERYIGDFGWAQLLQAFLVSFAWVFDAQQ 60

Query: 52  TFISVFTDAEPTWHCTD---DSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108
           TFISVFTDAEP WHCT+   + C  VSN+CQLPK SW+WD  A TSI+SEW L CA S+I
Sbjct: 61  TFISVFTDAEPPWHCTELGTELCTSVSNICQLPKGSWAWDRAADTSIVSEWTLVCAGSII 120

Query: 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR 168
           K LPASSFF GC+ GGL+LATLADSS GRKNMLF SCL+MS + +LTIFS N+WIYS  R
Sbjct: 121 KSLPASSFFTGCMVGGLVLATLADSSFGRKNMLFFSCLLMSATGILTIFSPNVWIYSGFR 180

Query: 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRI 228
           F++GFGRATIGTCAIVLSTELVGK+ R QVG  GFF FTLGFLSLPAIAY++R SSWR +
Sbjct: 181 FLSGFGRATIGTCAIVLSTELVGKRWRSQVGVCGFFLFTLGFLSLPAIAYLSRSSSWRYL 240

Query: 229 YLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF 288
           YL+TS+P  LYC+LV F VRESPRWL ++GRKEEAV+ +KSI  + N  S  + F+ + F
Sbjct: 241 YLWTSVPASLYCVLVHFFVRESPRWLLVRGRKEEAVATLKSIG-AVNNSSFTLSFSGLPF 299

Query: 289 -EQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVT 347
            E+ET N+ LYS I IL+EK+WALRRLSA+M  GFG+GMVYYGMPL LG+L FNLY +VT
Sbjct: 300 EEEETTNLHLYSVISILLEKRWALRRLSAVMTVGFGVGMVYYGMPLALGNLPFNLYWNVT 359

Query: 348 FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407
           FNALSELPASLI FF I +L RKSS+L FT+ SGVCS++CVVMG+ W S++IGLELV+FF
Sbjct: 360 FNALSELPASLIAFFFIERLNRKSSVLVFTMTSGVCSIMCVVMGEEWASLKIGLELVSFF 419

Query: 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGL 467
           S CTAF +LLIYT+ELFPTCVRNSA++MVRQALVFGGVF PV+V  GR N +LSYG+FG+
Sbjct: 420 STCTAFDILLIYTIELFPTCVRNSAMAMVRQALVFGGVFCPVIVEIGRGNGYLSYGVFGV 479

Query: 468 VIGLCGLFVIGLPETRDTQLSDTMDEEEYKERA 500
           VI  CGLFV  LPET+   L DTM+EEE K+RA
Sbjct: 480 VIISCGLFVGCLPETKGGTLCDTMEEEENKQRA 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219226|ref|NP_173089.1| organic cation/carnitine transporter 3 [Arabidopsis thaliana] gi|75265504|sp|Q9SA38.1|OCT3_ARATH RecName: Full=Organic cation/carnitine transporter 3; Short=AtOCT3 gi|4966360|gb|AAD34691.1|AC006341_19 Is a member of the PF|00083 sugar transporter family [Arabidopsis thaliana] gi|18958009|gb|AAL79578.1| At1g16390/F3O9_19 [Arabidopsis thaliana] gi|23507793|gb|AAN38700.1| At1g16390/F3O9_19 [Arabidopsis thaliana] gi|332191324|gb|AEE29445.1| organic cation/carnitine transporter 3 [Arabidopsis thaliana]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/516 (66%), Positives = 411/516 (79%), Gaps = 20/516 (3%)

Query: 1   MSDST-PILT-----QSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFI 54
           M+DST P+L+     +S+L    SL ETIERCIGDF  AQ +QA LVS AWFFDAQQTFI
Sbjct: 1   MADSTRPLLSDFNSSESNLPPPRSLEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTFI 60

Query: 55  SVFTDAEPTWHC-----TDDSCN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108
           +VFTD++P WHC      D  CN   SNLC LP  +WSWDL  H SIISEW L+CA S +
Sbjct: 61  TVFTDSQPMWHCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGSFL 120

Query: 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR 168
           KG PASSFF+GCL GGL L+TLADSSLGRKNML LSCL+MS+S +LT FST++W+Y+ LR
Sbjct: 121 KGFPASSFFLGCLIGGLALSTLADSSLGRKNMLLLSCLIMSLSSMLTAFSTSIWVYAFLR 180

Query: 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRI 228
           F+NG GRATIGTCA+VLSTELVGKK RGQVG++GFFCFTLGFLSLP + YIN G+SWR +
Sbjct: 181 FLNGCGRATIGTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPMLGYINEGNSWRNL 240

Query: 229 YLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF 288
           Y++TSIPT++YC LVR  VRESPRWL ++GRKEEAVSI++SI+++    ++ M F N+ F
Sbjct: 241 YVWTSIPTLIYCCLVRSFVRESPRWLIVKGRKEEAVSILQSIASN----AITMSFTNLCF 296

Query: 289 E----QETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL 344
           E    Q   N D+Y A+KILV K W+ RRL A MV GFGIGMVYYGMPL L +L+FNLYL
Sbjct: 297 EVENDQSKSNPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNLNFNLYL 356

Query: 345 SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404
            V FNALSE PA LITFF I K+ R+ +L+GFT +SG+ S L  V+G+   S++I LELV
Sbjct: 357 GVVFNALSEFPAFLITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGSLQIVLELV 416

Query: 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGI 464
           +FFSACTAF++ LIYT+E+FPTCVRNSAISMVRQALVFGGVFSPV+VAAGR+N F SYG+
Sbjct: 417 SFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQFWSYGL 476

Query: 465 FGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERA 500
           FGL+IGLCGLFV GLPETR + L DTMDEEEYK  A
Sbjct: 477 FGLIIGLCGLFVFGLPETRGSVLCDTMDEEEYKTLA 512

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844562|ref|XP_002890162.1| hypothetical protein ARALYDRAFT_471835 [Arabidopsis lyrata subsp. lyrata] gi|297336004|gb|EFH66421.1| hypothetical protein ARALYDRAFT_471835 [Arabidopsis lyrata subsp. lyrata]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/516 (65%), Positives = 412/516 (79%), Gaps = 20/516 (3%)

Query: 1   MSDST-PILT-----QSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFI 54
           M+DST P+L+     +S+L    SL ETIE+CIG+F  AQ +QA LVS AW FDAQQTFI
Sbjct: 1   MADSTRPLLSDSNSSESNLPPPKSLDETIEQCIGNFGWAQFLQAALVSFAWVFDAQQTFI 60

Query: 55  SVFTDAEPTWHCTDDS-----CN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108
           +VFTD++PTWHCTD       CN   SNLC LP  +WSWD   H SIISEW L+CA S +
Sbjct: 61  TVFTDSQPTWHCTDSDLVDSVCNTSSSNLCTLPNQTWSWDFNPHVSIISEWGLQCAGSFL 120

Query: 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR 168
           KGLPASSFF+GCL GGL+L+TLADSSLGRKNML LSCL+MS+S +LT FST++W+Y+ LR
Sbjct: 121 KGLPASSFFLGCLIGGLVLSTLADSSLGRKNMLLLSCLIMSLSSMLTAFSTSIWVYAFLR 180

Query: 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRI 228
           F+NG GRATIGTCA+VLSTELVGKK RG+VG++GFFCFTLGFLSLP + YIN G+SWR +
Sbjct: 181 FLNGCGRATIGTCALVLSTELVGKKWRGKVGAMGFFCFTLGFLSLPMLGYINNGNSWRYL 240

Query: 229 YLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF 288
           Y++TSIPT++YC L+R  VRESPRWL ++GRKEEAVSI++SI+++    ++ M F N+ F
Sbjct: 241 YVWTSIPTLIYCCLIRIFVRESPRWLIVKGRKEEAVSILQSIASN----AITMSFTNLCF 296

Query: 289 E----QETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL 344
           +    Q   N D+Y A+KILV K W+ RRL A MV GFGIGMVYYGMPL L +L+FNLYL
Sbjct: 297 DIEEDQSNSNPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNLNFNLYL 356

Query: 345 SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404
            V FNALSE PA LITFF I K+ R+ +L+GFT +SG+ S L  V+G+   +++I LELV
Sbjct: 357 GVVFNALSEFPAFLITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGALQIVLELV 416

Query: 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGI 464
           +FFSACTAF++ LIYT+E+FPTCVRNSAI+MVRQALVFGGVFSPV+VAAGR+N F SYG+
Sbjct: 417 SFFSACTAFNMTLIYTIEMFPTCVRNSAIAMVRQALVFGGVFSPVMVAAGRENQFWSYGL 476

Query: 465 FGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERA 500
           FGLVI LCGLFV GLPETR + L DTMDEEEYK  A
Sbjct: 477 FGLVIALCGLFVFGLPETRGSVLCDTMDEEEYKTLA 512

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558398|ref|XP_002520225.1| sugar transporter, putative [Ricinus communis] gi|223540593|gb|EEF42158.1| sugar transporter, putative [Ricinus communis]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/506 (65%), Positives = 399/506 (78%), Gaps = 32/506 (6%)

Query: 1   MSDSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDA 60
           M+DSTP+LTQ +                  SSA   Q              +    FT+A
Sbjct: 1   MADSTPLLTQRN------------------SSADSKQP-----------PPSLDECFTEA 31

Query: 61  EPTWHCTDDSCNGV--SNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFM 118
           EPTWHCTD   NG+   N+C L K+SW+WD   ++S+IS+W LEC+SS IKGLPASSFFM
Sbjct: 32  EPTWHCTDQHGNGLCNDNICHLSKDSWAWDRPIYSSVISDWGLECSSSFIKGLPASSFFM 91

Query: 119 GCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATI 178
           GCLAGGL L TLADS LGRKNML LSCLMMS + LLT+FS N+WIYSVL+F+NGFGRATI
Sbjct: 92  GCLAGGLFLTTLADSCLGRKNMLLLSCLMMSFASLLTVFSPNIWIYSVLKFVNGFGRATI 151

Query: 179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTIL 238
           GTCA+VLSTE+VGK+ RGQVG IGFFCFTLGFLSLPAIAYINR SSWR +YL+TSIPTI 
Sbjct: 152 GTCALVLSTEVVGKRWRGQVGVIGFFCFTLGFLSLPAIAYINRDSSWRHLYLWTSIPTIF 211

Query: 239 YCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLY 298
           YCILV   VRESPRWL I+GRK+EA+ I+ SI+  +    L  +F++  FEQE+WNVD+Y
Sbjct: 212 YCILVHLWVRESPRWLLIRGRKDEAMGILTSIAAIDGS-CLTSNFSDFRFEQESWNVDIY 270

Query: 299 SAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASL 358
           SAIKIL+EK+WA RRLS +MV GFG G+VYYGMPLGLG+L FNLYLSV FNALSELPA+L
Sbjct: 271 SAIKILLEKRWAFRRLSTVMVVGFGTGLVYYGMPLGLGTLDFNLYLSVMFNALSELPAAL 330

Query: 359 ITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLI 418
           ITFFLI KL RK SLL F+ +SGVCS+LCV++GK+ + ++IGLE+++FF ACT F++LLI
Sbjct: 331 ITFFLINKLNRKCSLLVFSSLSGVCSILCVLLGKLSSKIQIGLEMISFFCACTGFNILLI 390

Query: 419 YTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIG 478
           YT+ELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR++  LSYG+FGLVIG+CG+FVI 
Sbjct: 391 YTIELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRESALLSYGVFGLVIGICGVFVIC 450

Query: 479 LPETRDTQLSDTMDEEEYKERAAAAG 504
           LPET    + DTM+EEE+K+R  + G
Sbjct: 451 LPETMGETICDTMEEEEHKQRFPSNG 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219351|ref|NP_178054.1| organic cation/carnitine transporter 2 [Arabidopsis thaliana] gi|75219810|sp|O64515.1|OCT2_ARATH RecName: Full=Organic cation/carnitine transporter 2; Short=AtOCT2 gi|3152576|gb|AAC17057.1| Similar to liver-specific transport protein gb|L27651 from Rattus norviegicus [Arabidopsis thaliana] gi|332198113|gb|AEE36234.1| organic cation/carnitine transporter 2 [Arabidopsis thaliana]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/526 (60%), Positives = 416/526 (79%), Gaps = 17/526 (3%)

Query: 1   MSDST-PILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTD 59
           M++ T P+LT S+  S  SL +TIE  IG F  AQ +QA LVS +  FDAQQTFISVFTD
Sbjct: 1   MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTD 60

Query: 60  AEPTWHCTDDS--CN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSF 116
           +EPTWHCTD +  C+  +SN+C LPK +WSWD   H S+ISEW L+CA S +KGLP SSF
Sbjct: 61  SEPTWHCTDSNSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGSFVKGLPESSF 120

Query: 117 FMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA 176
           F+GCL GGL+L+TLADSSLGRKNMLFLSCL+M++S +LT+FS N+W+Y+VLRF+NGFGRA
Sbjct: 121 FVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRA 180

Query: 177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPT 236
           TIGTCA+VLSTELVGKK RG+VG + FF F LGFLSLP +AY+NRGSSWR +Y +TSIPT
Sbjct: 181 TIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPT 240

Query: 237 ILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQR-----SLIMDFNNVSFEQE 291
           I+YC+LVRF V ESPRWLF++GR+EEA+SI+K +++  +       ++ M F+++ FE++
Sbjct: 241 IIYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSLPFEED 300

Query: 292 ----TWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVT 347
               + NV++++ +K+LVEK+WAL+RLSA+M   FGIG+VYYGMPL L +L FN+YLS  
Sbjct: 301 EEKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAA 360

Query: 348 FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI----WTSVEIGLEL 403
           FNAL +LPA+LIT FL+ KL R+++L+GFT + GV SVL   +  +      ++++ LEL
Sbjct: 361 FNALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHGALQLALEL 420

Query: 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYG 463
           +++FSAC+AF++ +IYT+ELFPTCVRNSAI+M RQALV GGVFSP++VAAGR+N F S+G
Sbjct: 421 ISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFG 480

Query: 464 IFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV 509
           +FGL IGL GLF +GLPETR + L DTMDEEE K+R +    N ++
Sbjct: 481 LFGLAIGLLGLFAVGLPETRGSDLCDTMDEEECKDRRSKVAVNNVI 526

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842719|ref|XP_002889241.1| hypothetical protein ARALYDRAFT_895842 [Arabidopsis lyrata subsp. lyrata] gi|297335082|gb|EFH65500.1| hypothetical protein ARALYDRAFT_895842 [Arabidopsis lyrata subsp. lyrata]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/525 (60%), Positives = 411/525 (78%), Gaps = 16/525 (3%)

Query: 1   MSDST-PILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTD 59
           M++ T P+LT S+  S  S  +TIE  IG F  AQ +QA LVS +  FDAQQTFISVFTD
Sbjct: 1   MAEPTQPLLTDSNSSSPRSFDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTD 60

Query: 60  AEPTWHCTDDS--CN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSF 116
           +EPTWHCTD    C+  +SN+C LPK +WSWD   H S+ISEW L+CA S +KGLP SSF
Sbjct: 61  SEPTWHCTDSDSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGSFVKGLPESSF 120

Query: 117 FMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA 176
           F+GCL GGL+L+TLADSSLGRKNMLFLSCL+M++S +LT+FS N+W+Y+VLRF+NGFGRA
Sbjct: 121 FVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRA 180

Query: 177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPT 236
           TIGTCA+VLSTELVGKK RG+VG + FF F LGFLSLP +AYINRGSSWR +Y++TSIPT
Sbjct: 181 TIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYINRGSSWRILYVWTSIPT 240

Query: 237 ILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI----STSENQRSLI-MDFNNVSFEQE 291
           I+YC+LVRF V ESPRWLF++GRKEEA+SI+K +    ST  N    I M F+++ FE E
Sbjct: 241 IIYCVLVRFFVCESPRWLFVRGRKEEAISILKRVASIPSTDVNIGGAISMSFSSLPFEDE 300

Query: 292 TW---NVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTF 348
                NV++++ +K+LVEK+WAL+RLSA+M   FGIG+VYYGMPL L +L FN+YLS  F
Sbjct: 301 EEKPNNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAF 360

Query: 349 NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI----WTSVEIGLELV 404
           NAL +LPA+LIT FL+ KL R+++L+GFT + GV SVL   +  +      ++++ LEL+
Sbjct: 361 NALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALQNMRIGNHGALQLALELI 420

Query: 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGI 464
           ++FSAC+AF++ +IYT+ELFPTCVRNSAI+M RQALV GGVFSP++VAAGR+N F S+G+
Sbjct: 421 SYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGL 480

Query: 465 FGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV 509
           FGL I L GLF +GLPETR + L DTMDEEE K+R +    + ++
Sbjct: 481 FGLAIALLGLFAVGLPETRGSDLCDTMDEEECKDRRSKVAIDSVI 525

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462303|ref|XP_002265206.1| PREDICTED: solute carrier family 22 member 21-like [Vitis vinifera]

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/525 (59%), Positives = 403/525 (76%), Gaps = 24/525 (4%)

Query: 1   MSDSTPILTQSD----------LESR--------PSLGETIERCIGDFSSAQLVQAFLVS 42
           M+++TP+L+QS+          +ES         PSL E IE+ IG F+ AQL+ A LVS
Sbjct: 1   MANATPLLSQSELSQPLSPSSSIESETPSVEKVLPSLDEFIEQSIGGFAWAQLLHAILVS 60

Query: 43  IAWFFDAQQTFISVFTDAEPTWHCTD---DSCNGVSNLCQLPKNSWSWDLQAHTSIISEW 99
           +AW FD QQTFIS+FTDAEPTWHC     + CN  SN+C LPK +W WD  A+T  ISEW
Sbjct: 61  LAWLFDGQQTFISIFTDAEPTWHCNHLSTEDCNSGSNICLLPKTAWEWDKPAYTFFISEW 120

Query: 100 DLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST 159
            LEC +S+IKGLPA+SFFMGCL GG +LA +ADSS GRKNMLFLSCL MSV+ LLT+FST
Sbjct: 121 SLECVNSIIKGLPATSFFMGCLLGGFLLAPVADSSFGRKNMLFLSCLTMSVAALLTVFST 180

Query: 160 NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYI 219
           N+W+YS LRFI+GFGRA+IG  A+VLSTE VG   RGQVG+IGF C TLGFLSLPA+AY+
Sbjct: 181 NIWMYSALRFISGFGRASIGASALVLSTETVGNAWRGQVGTIGFLCCTLGFLSLPAMAYM 240

Query: 220 NRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQ--- 276
           NR SSWR +Y++TSIP I YC+L+RFLV ESPRWLF+QGRKEEA++ ++ ++  EN    
Sbjct: 241 NRSSSWRLLYVWTSIPAIFYCLLIRFLVCESPRWLFMQGRKEEALATLEKLAPMENNTSL 300

Query: 277 RSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLG 336
           +SL +  +    +QE   ++L+ +IK+L+EK+WA RRL A+MV  FGIG++YYGMPLG+G
Sbjct: 301 KSLDLCLSGALLKQEKMKMNLHLSIKMLLEKRWASRRLLAVMVIAFGIGIMYYGMPLGVG 360

Query: 337 SLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTS 396
           +L++NLYLSVT N L+E+P+SLIT F IGK  R+SS+L  T +SGV S++CVV+G     
Sbjct: 361 NLAYNLYLSVTLNVLAEMPSSLITMFYIGKWSRRSSVLALTTISGVSSIMCVVVGHGMKE 420

Query: 397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ 456
           +++GLEL++FF ACT FS+L+IYTLELFPTCVR+ A++MVRQAL+  G  S +L+AAG+ 
Sbjct: 421 LQVGLELISFFCACTVFSVLMIYTLELFPTCVRSLAVAMVRQALMSSGTVSTILIAAGKT 480

Query: 457 NNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAA 501
           N FLSYG+FGL+I  CGLFV+ LPET+   L DTM+E+E+KE  A
Sbjct: 481 NAFLSYGVFGLLILCCGLFVVCLPETKGLSLCDTMEEQEHKEANA 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508582|ref|XP_003523034.1| PREDICTED: LOW QUALITY PROTEIN: solute carrier family 22 member 8-like [Glycine max]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 315/520 (60%), Positives = 397/520 (76%), Gaps = 22/520 (4%)

Query: 1   MSDSTPIL------------TQSDLES---RPSLGETIERCIGDFSSAQLVQAFLVSIAW 45
           M+DSTP+L            TQ    S    PSLG T+E CIG+F+ +Q +Q+ LVS+AW
Sbjct: 1   MADSTPLLSQPNPSSSSSPDTQEAPPSNQHHPSLGSTVELCIGEFNWSQFLQSILVSLAW 60

Query: 46  FFDAQQTFISVFTDAEPTWHCTD---DSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLE 102
            FDAQQTFISVFTDA P WHCT+   ++C   + +C LPK SW+WD+    SI+SEW LE
Sbjct: 61  IFDAQQTFISVFTDALPEWHCTERGANACKTATTVCSLPKGSWAWDVPTQASIVSEWGLE 120

Query: 103 CASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW 162
           CA+S I GLPAS FF+GCL GG +LA+LADSSLGRKNMLF SCL+M+++ LL   S N+W
Sbjct: 121 CANSAITGLPASMFFLGCLIGGFVLASLADSSLGRKNMLFFSCLVMAITSLLVTLSPNVW 180

Query: 163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRG 222
           IYS L+F+ GF RATIGT A+VL++ELVGK+ RGQ+  IGFFCFT+GFLSLPA+AYINR 
Sbjct: 181 IYSALKFLCGFARATIGTSALVLASELVGKRWRGQISVIGFFCFTIGFLSLPAMAYINRS 240

Query: 223 SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMD 282
           SSWR +YL+TSI T+ YCILV+  V ESPRWL ++G+ EEAV  +K I TS  Q +L + 
Sbjct: 241 SSWRNLYLWTSISTMFYCILVKLFVTESPRWLLVRGKTEEAVETLKCI-TSITQSNLNLA 299

Query: 283 FNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNL 342
            NN+S ++ETWNVD++SA+KIL++KKW+ RRLS IM  G GIG+VYYGMPLGL +LSFNL
Sbjct: 300 INNMSHKEETWNVDIFSALKILLQKKWSSRRLSLIMAMGIGIGLVYYGMPLGLQNLSFNL 359

Query: 343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI--WT-SVEI 399
           YLSVTFNALSELP++LI  F + K  R+ +LL FTI+SGV SV+ ++  K   WT +++I
Sbjct: 360 YLSVTFNALSELPSALIVLFFVDKFNRRVALLLFTILSGVFSVMSIMEMKTSSWTNNIQI 419

Query: 400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNF 459
             ELV+FFSAC++F++ LIYT ELFPTCVRNSA+SM R A+V GG FSP+LV+A R N F
Sbjct: 420 VFELVSFFSACSSFNVYLIYTTELFPTCVRNSALSMARLAVVLGGTFSPLLVSAARGNKF 479

Query: 460 LSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKER 499
           + YG+FGLVIG  G+F I LPET+   L DTMDEEE KE+
Sbjct: 480 MCYGVFGLVIGFSGVFGIFLPETKGRALCDTMDEEENKEK 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	509
TAIR|locus:2032825	518	OCT3 "AT1G16390" [Arabidopsis	0.974	0.957	0.647	7.5e-176
TAIR|locus:2207360	527	OCT2 "AT1G79360" [Arabidopsis	1.0	0.965	0.587	4.2e-166
TAIR|locus:2032790	521	OCT6 "AT1G16370" [Arabidopsis	0.976	0.953	0.405	6e-103
TAIR|locus:2206430	515	OCT5 "AT1G79410" [Arabidopsis	0.970	0.959	0.41	7.7e-103
TAIR|locus:2197244	539	OCT1 "AT1G73220" [Arabidopsis	0.927	0.875	0.396	1.2e-90
TAIR|locus:2083425	526	OCT4 "organic cation/carnitine	0.948	0.918	0.346	1.5e-74
UNIPROTKB|Q2KJE9	557	SLC22A5 "Solute carrier family	0.791	0.723	0.294	6.8e-47
UNIPROTKB|F1RJV4	581	SLC22A5 "Uncharacterized prote	0.779	0.683	0.3	8.6e-45
UNIPROTKB|F1MII8	540	SLC22A8 "Uncharacterized prote	0.793	0.748	0.280	1.1e-44
UNIPROTKB|O76082	557	SLC22A5 "Solute carrier family	0.791	0.723	0.287	1.8e-44

TAIR|locus:2032825 OCT3 "AT1G16390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
 Identities = 334/516 (64%), Positives = 398/516 (77%)

Query:     1 MSDST-PILT-----QSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFI 54
             M+DST P+L+     +S+L    SL ETIERCIGDF  AQ +QA LVS AWFFDAQQTFI
Sbjct:     1 MADSTRPLLSDFNSSESNLPPPRSLEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTFI 60

Query:    55 SVFTDAEPTWHC-----TDDSCN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108
             +VFTD++P WHC      D  CN   SNLC LP  +WSWDL  H SIISEW L+CA S +
Sbjct:    61 TVFTDSQPMWHCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGSFL 120

Query:   109 KGLPASSFFMGCLAGGLILATLADSSLGRKNXXXXXXXXXXXXXXXTIFSTNMWIYSVLR 168
             KG PASSFF+GCL GGL L+TLADSSLGRKN               T FST++W+Y+ LR
Sbjct:   121 KGFPASSFFLGCLIGGLALSTLADSSLGRKNMLLLSCLIMSLSSMLTAFSTSIWVYAFLR 180

Query:   169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRI 228
             F+NG GRATIGTCA+VLSTELVGKK RGQVG++GFFCFTLGFLSLP + YIN G+SWR +
Sbjct:   181 FLNGCGRATIGTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPMLGYINEGNSWRNL 240

Query:   229 YLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF 288
             Y++TSIPT++YC LVR  VRESPRWL ++GRKEEAVSI++SI+++    ++ M F N+ F
Sbjct:   241 YVWTSIPTLIYCCLVRSFVRESPRWLIVKGRKEEAVSILQSIASN----AITMSFTNLCF 296

Query:   289 E----QETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL 344
             E    Q   N D+Y A+KILV K W+ RRL A MV GFGIGMVYYGMPL L +L+FNLYL
Sbjct:   297 EVENDQSKSNPDVYDALKILVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNLNFNLYL 356

Query:   345 SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404
              V FNALSE PA LITFF I K+ R+ +L+GFT +SG+ S L  V+G+   S++I LELV
Sbjct:   357 GVVFNALSEFPAFLITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGSLQIVLELV 416

Query:   405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGI 464
             +FFSACTAF++ LIYT+E+FPTCVRNSAISMVRQALVFGGVFSPV+VAAGR+N F SYG+
Sbjct:   417 SFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQFWSYGL 476

Query:   465 FGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERA 500
             FGL+IGLCGLFV GLPETR + L DTMDEEEYK  A
Sbjct:   477 FGLIIGLCGLFVFGLPETRGSVLCDTMDEEEYKTLA 512

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2207360 OCT2 "AT1G79360" [Arabidopsis thaliana (taxid:3702)]

 Score = 1616 (573.9 bits), Expect = 4.2e-166, P = 4.2e-166
 Identities = 309/526 (58%), Positives = 401/526 (76%)

Query:     1 MSDST-PILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTD 59
             M++ T P+LT S+  S  SL +TIE  IG F  AQ +QA LVS +  FDAQQTFISVFTD
Sbjct:     1 MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTD 60

Query:    60 AEPTWHCTDDS--CN-GVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSF 116
             +EPTWHCTD +  C+  +SN+C LPK +WSWD   H S+ISEW L+CA S +KGLP SSF
Sbjct:    61 SEPTWHCTDSNSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGSFVKGLPESSF 120

Query:   117 FMGCLAGGLILATLADSSLGRKNXXXXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRA 176
             F+GCL GGL+L+TLADSSLGRKN               T+FS N+W+Y+VLRF+NGFGRA
Sbjct:   121 FVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRA 180

Query:   177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPT 236
             TIGTCA+VLSTELVGKK RG+VG + FF F LGFLSLP +AY+NRGSSWR +Y +TSIPT
Sbjct:   181 TIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPT 240

Query:   237 ILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI----STSENQRSLI-MDFNNVSFEQE 291
             I+YC+LVRF V ESPRWLF++GR+EEA+SI+K +    ST  +    I M F+++ FE++
Sbjct:   241 IIYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISMSFSSLPFEED 300

Query:   292 ----TWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVT 347
                 + NV++++ +K+LVEK+WAL+RLSA+M   FGIG+VYYGMPL L +L FN+YLS  
Sbjct:   301 EEKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAA 360

Query:   348 FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWT----SVEIGLEL 403
             FNAL +LPA+LIT FL+ KL R+++L+GFT + GV SVL   +  +      ++++ LEL
Sbjct:   361 FNALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHGALQLALEL 420

Query:   404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYG 463
             +++FSAC+AF++ +IYT+ELFPTCVRNSAI+M RQALV GGVFSP++VAAGR+N F S+G
Sbjct:   421 ISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFG 480

Query:   464 IFGLVIGLCGLFVIGLPETRDTQLSDTMDEEEYKERAAAAGFNRLV 509
             +FGL IGL GLF +GLPETR + L DTMDEEE K+R +    N ++
Sbjct:   481 LFGLAIGLLGLFAVGLPETRGSDLCDTMDEEECKDRRSKVAVNNVI 526

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2032790 OCT6 "AT1G16370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 205/505 (40%), Positives = 313/505 (61%)

Query:     1 MSDSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDA 60
             ++D + +  ++ LE+  +  + +E+ + DF   Q  Q  LV +A  FDAQQ FI+V+TDA
Sbjct:    13 LTDDSGVNEKTRLEAL-TFDKIVEQSLSDFGFWQFFQISLVGLALLFDAQQIFITVYTDA 71

Query:    61 EPTWHCTDDS-CN-GVSNLCQLPKNSWSWDLQAH-TSIISEWDLECASSLIKGLPASSFF 117
              PTWHC + + C+   S++C+LP+++W WD  +   S+ISE+ LEC+SSL++G+P+S+F+
Sbjct:    72 YPTWHCLNHTICDPSASDICKLPRSAWEWDGGSQGKSVISEFGLECSSSLLRGMPSSAFY 131

Query:   118 MGCLAGGLILATLADSSLGRKNXXXXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRAT 177
             +G + GG  LA + D SLGRK                 IFSTN+WIY+ L+FI GF R+ 
Sbjct:   132 IGAIVGGFFLALIPDDSLGRKKLVLFSTFAMSITSISVIFSTNVWIYTFLKFIIGFSRSQ 191

Query:   178 IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTI 237
               + A+VL +E V  + R +   I F  F LGF+SL  IA++ + SSWR +YLYTS+P +
Sbjct:   192 TWSYALVLISERVSTRWRPRATMIPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAV 251

Query:   238 LYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWN-VD 296
              YCI +     ESPRWL +QG+ +EA+ ++  +S  E +  L    + +  +QE +    
Sbjct:   252 FYCIFLYLFALESPRWLHMQGKDKEAIDVLTKMSPKE-KAYLESVVSKLPLKQENFEQAP 310

Query:   297 LYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPA 356
              YS IK    +KWA RR+  +M+  FG+G+ YYG+PL    +  N+YLS T NAL ELP 
Sbjct:   311 TYS-IKDFFFRKWAFRRILVVMIIMFGLGISYYGVPLAARDIDVNIYLSETLNALVELPT 369

Query:   357 SLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW-TSVEIGLELVAFFSACTAFSL 415
              +IT  L+ +  R+SS+L  T++ G   VLC V+  +  T +    EL  FF A   F+L
Sbjct:   370 FVITPILLERFNRRSSVLVNTLLGGASGVLCFVLSILGKTEIAFAFELGTFFCARIGFNL 429

Query:   416 LLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLF 475
             + ++ +E+FPTCVR+SA  M RQALV GG   P++ + GR    +S+ IFG+ +   G+F
Sbjct:   430 MAVFMVEMFPTCVRSSATMMFRQALVVGGACCPLIASIGRYIPSVSFAIFGIAMSGLGMF 489

Query:   476 VIGLPETRDTQLSDTMDEEEYKERA 500
             V+ LPET+   L D+M+E+E +++A
Sbjct:   490 VLILPETKGLSLCDSMEEQEKRDQA 514

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2206430 OCT5 "AT1G79410" [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 205/500 (41%), Positives = 306/500 (61%)

Query:     5 TPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTW 64
             T I    D  S  +  + +E+ + DF  +Q +Q  LV +A  FD+QQ FI+VFTDA PTW
Sbjct:    11 THIEEDEDTSSPLTFDKILEKSLSDFGFSQFLQIVLVGLALTFDSQQIFITVFTDAYPTW 70

Query:    65 HCTDDS-CN-GVSNLCQLPKNSWSWDLQAH-TSIISEWDLECASSLIKGLPASSFFMGCL 121
             HC D + CN   +++C++P+++W WD      S+ISE+DLEC+SS ++ LP+S+F++G +
Sbjct:    71 HCLDHTICNPATTDICKIPRSAWDWDGGFKGKSVISEFDLECSSSFLRSLPSSTFYVGSI 130

Query:   122 AGGLILATLADSSLGRKNXXXXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRATIGTC 181
              GG++LA + D SLGRK                   S+N+WIYS L+F+ GF R+  GT 
Sbjct:   131 VGGVVLAMIPDGSLGRKQLLFFSSFAMSLTGISIFLSSNIWIYSFLKFVIGFARSQTGTY 190

Query:   182 AIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCI 241
             A+VL +E +  K R +   + F  F LGF+SL  IAY+ R +SW+ +YL TSIP  ++ I
Sbjct:   191 ALVLISERISTKWRPRATMVPFTLFVLGFMSLSGIAYLVRHASWKVLYLCTSIPAGIHSI 250

Query:   242 LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAI 301
              + F   ESPRWL ++G+ +EA+ ++K IS +   R  +   ++    +ET       +I
Sbjct:   251 FIYFFALESPRWLHLEGKNKEAIEVLKRISPAN--RGYLESVSSRLRPKETLEQTSSYSI 308

Query:   302 KILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITF 361
             K L   KWA RR++ +M+  FG+GM YYG+PL +  +  N+Y+S   NA+ ELP  ++T 
Sbjct:   309 KDLFIIKWAFRRVTLVMIIMFGLGMSYYGVPLAVRDIKVNIYMSEALNAMVELPTFVVTP 368

Query:   362 FLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW-TSVEIGLELVAFFSACTAFSLLLIYT 420
              L+ +  R+SS+L   ++ G   VLC VM     T +   LEL +FF A   F+L+ IY 
Sbjct:   369 ILLEQFSRRSSVLVNCLIGGASGVLCFVMSLYGRTKIAFALELGSFFCARIGFNLMAIYL 428

Query:   421 LELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLP 480
             +ELFPTCVRNSA  M+RQALV GG   P++ + GR    LS+ +FG  +   GLF + LP
Sbjct:   429 VELFPTCVRNSATMMLRQALVVGGACCPLIASLGRNVPSLSFAVFGFAMSGLGLFALLLP 488

Query:   481 ETRDTQLSDTMDEEEYKERA 500
             ET+   L DTM+E+E +++A
Sbjct:   489 ETKGLSLCDTMEEQEQRDQA 508

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2197244 OCT1 "AT1G73220" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 193/487 (39%), Positives = 287/487 (58%)

Query:    18 SLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWH--CTDDSCNGVS 75
             ++ E IE+ IG    AQ++ A LVSIAW FDAQ T IS+F+DA+P      T     G S
Sbjct:    44 TVDEVIEQHIGALGFAQILHALLVSIAWIFDAQTTLISIFSDAQPAARLLATGAIVEGAS 103

Query:    76 NLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL 135
              LC L    W W      +++SEW+L C    +  +P++ FF+G L G  +   LADS  
Sbjct:   104 -LCGLASGEWEWIGPKSDTVVSEWNLICQHKFLVAVPSTLFFIGSLFGSGVYGYLADSWF 162

Query:   136 GRKNXXXXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRR 195
             GRK                  FS N+W+Y+ LRF NGF R+ IG+C IVL+TE+VGKK R
Sbjct:   163 GRKKTLLLSCVLTFVTAFAISFSPNVWVYAFLRFANGFFRSGIGSCCIVLATEIVGKKWR 222

Query:   196 GQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLF 255
             GQVG  GFF FTLGFLSLP +AY+ R  SWR +Y   S   + Y + +     ESPRWL 
Sbjct:   223 GQVGQYGFFFFTLGFLSLPLMAYLER-KSWRNLYRIISFLPLGYAVCLLPFAYESPRWLL 281

Query:   256 IQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLS 315
             ++GR +EA+ ++K ++   N + L  D + V    E    D  S+ +   + KWA++R+ 
Sbjct:   282 VKGRNKEAMVVLKKLARL-NGKQLPADLSLVDPIPE--RDDQTSSSEKFWKTKWAVKRII 338

Query:   316 AIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLG 375
              +M+ GFG G VYYG+ L   +L+FNLYL+V  NAL E PA  I  FL+G + R+     
Sbjct:   339 MVMMAGFGSGFVYYGIQLNAENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSN 398

Query:   376 FTIMSGVCSVLCVVMG--KIWTSV------EIGLELVAFFSACTAFSLLLIYTLELFPTC 427
              + ++G   +LC V+   ++  ++      ++ +E V F ++ TA+ +L +Y +ELFPT 
Sbjct:   399 SSYLAGFACLLCAVLSIHRVIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTN 458

Query:   428 VRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQL 487
             VRN+A+S++RQA + G   +P+LVA GR++  +S+ +FG+   L G+  + L ETR+  L
Sbjct:   459 VRNTAVSLLRQAFMLGASAAPLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPL 518

Query:   488 SDTMDEE 494
              +T+ ++
Sbjct:   519 YETLAQQ 525

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0015226 "carnitine transmembrane transporter activity" evidence=IDA

GO:0010150 "leaf senescence" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2083425 OCT4 "organic cation/carnitine transporter4" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 172/496 (34%), Positives = 255/496 (51%)

Query:     3 DSTPILTQSDLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEP 62
             +  P+  +++ E R  + E ++R  G+F   QL    L  IAW  +A  T + +F D EP
Sbjct:    18 EKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAWALEAFHTMVMIFADQEP 77

Query:    63 TWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLA 122
              W C    C   S  C+L  +SW W     +S +SEW L C      GL  + FF GC+ 
Sbjct:    78 EWRCVGSDCRVGSLNCELDPSSWEWTAGKGSSTVSEWGLICGDKYKVGLVQALFFAGCMI 137

Query:   123 GGLILATLADSSLGRKNXXXXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRATIGTCA 182
             G  +   L+DS LGRK                T FS N W Y VLRF+ GF    +G  A
Sbjct:   138 GAGVFGHLSDSKLGRKGSLTVVCIINAIFGIATAFSPNYWTYVVLRFLTGFSTGGVGLTA 197

Query:   183 IVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCIL 242
              VL+TE +G  +RG  G   F+ F+ G   L  IAY+ R  SWR +++ +S+P++L+ ++
Sbjct:   198 FVLATEPIGPSKRGVAGMSTFYFFSAGIAVLSGIAYVFR--SWRELFIVSSLPSLLFLLI 255

Query:   243 VRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQR-----SLIMDFNNVSFEQETWNVDL 297
             V   + ESPRW  ++G+ +EA+ ++ SI+ +  +      +L +D ++V       N  +
Sbjct:   256 VIPFISESPRWYLVRGKVDEAMKLMHSIAKTNGRHIPAGVTLALD-DDVENNNGERNTAV 314

Query:   298 YSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPAS 357
               ++K ++       RL   +   F + +VYYG+ L +G+L  NLYL+V  NA+SE+PA 
Sbjct:   315 EGSLKDVILSPLMRMRLVISVAISFTVSIVYYGLSLNVGNLKTNLYLNVFVNAVSEMPAF 374

Query:   358 LITFFLIGKLKRKSSLLGFTIMSGV-CSVLCVVMGK-IWTSVEIGLELVAFFSACTAFSL 415
              IT  L+ K  RK   +G    S V C V   V G   W SV +   ++  F     ++L
Sbjct:   375 AITAVLLDKYGRKPLSIGTQWFSCVFCLVGFSVWGAGPWKSVRMVSGVLGIFGMAGTYNL 434

Query:   416 LLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLF 475
             L IY  ELFPT VRN+A+    QA   G + +P +V  G +  F  + + GLV G  GL 
Sbjct:   435 LFIYIAELFPTVVRNAALGCATQAAQMGAILAPFVVVLGEELPFGVFAVCGLVGG--GL- 491

Query:   476 VIGLPETRDTQLSDTM 491
                LPET +  L DTM
Sbjct:   492 AFYLPETLNKPLYDTM 507

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

UNIPROTKB|Q2KJE9 SLC22A5 "Solute carrier family 22 (Organic cation/carnitine transporter), member 5" [Bos taurus (taxid:9913)]

 Score = 461 (167.3 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
 Identities = 123/417 (29%), Positives = 207/417 (49%)

Query:    83 NSWSWDLQAHTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNXX 141
             + W +    + S I++EW+L C       L  S FF+G L G  I   L+D   GRKN  
Sbjct:   115 DGWEFSQDIYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLMGSFISGQLSDR-FGRKNVL 173

Query:   142 XXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSI 201
                           IFS N  +++VL F+ G G+ +    A VL TE++GK  R    ++
Sbjct:   174 FVTMGMQTGFSFLQIFSKNFEMFTVLFFLVGMGQISNYVAAFVLGTEILGKSVRIIFSTL 233

Query:   202 GFFCF-TLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK 260
             G   F   G++ LP  AY  R   WR + L  ++P +L C  + + + ESPRWL  QGR 
Sbjct:   234 GVCIFYAFGYMLLPLFAYFIR--DWRMLLLALTVPGVL-CAALWWFIPESPRWLISQGRF 290

Query:   261 EEAVSIIKSISTSEN--QRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI- 317
             +EA  II+  + +      S I D + +  +  +     +S + ++  +   +R ++ + 
Sbjct:   291 QEAEVIIRRAAKTNGIIAPSTIFDSSELQ-DLSSKKQQSHSILDLIRTRN--IRMITVMS 347

Query:   318 MVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFT 377
             ++    I + Y+G+ L   +L  ++YL+   +A+ E+PA ++ + L+  L R+ S+    
Sbjct:   348 IILWLTISVGYFGLSLDTPNLHGDVYLNCFLSAVVEVPAYVLAWLLLRHLPRRYSMATAL 407

Query:   378 IMSG-VCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMV 436
              + G V   + +V  +++    + L +V  F    AFS++ +YT EL+PT VRN  + + 
Sbjct:   408 FLGGSVLLFVQLVPPELYYLATV-LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVS 466

Query:   437 RQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDE 493
               A   G + SP  V  G  + FL Y + G +  L  +  + LPET  T L DT+D+
Sbjct:   467 STASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFLPETFGTPLPDTIDQ 523

GO:0070715 "sodium-dependent organic cation transport" evidence=IEA

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IEA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RJV4 SLC22A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 451 (163.8 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
 Identities = 123/410 (30%), Positives = 203/410 (49%)

Query:    90 QAHTSII--SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNXXXXXXXX 147
             QAH S+   SEW+L C       L  S FF G L G  I   L+D   GRKN        
Sbjct:   145 QAHLSLCWKSEWNLVCEDDWKAPLTISLFFGGVLVGSFISGQLSDR-FGRKNVLFVTMGM 203

Query:   148 XXXXXXXTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCF- 206
                     +FS N  +++VL F+ G G+ +    A VL TE++GK  R    ++G   F 
Sbjct:   204 QTGFSFLQVFSKNYEMFAVLFFLVGMGQISNYVAAFVLGTEILGKSVRIIFSTLGVCIFY 263

Query:   207 TLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSI 266
               G++ LP  AY  R   WR + L  ++P +L C+++ + + ESPRWL  QGR +EA  I
Sbjct:   264 AFGYMLLPLFAYFIR--DWRMLLLALTVPGLL-CVVLWWFIPESPRWLISQGRFQEAEVI 320

Query:   267 IKSISTSEN--QRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI 324
             I+  +        S I D + +  +  +     +S + +L  +   +  + +I++    I
Sbjct:   321 IRKAAGLNGIVAPSTIFDSSELQ-DLSSKKQQSHSILDLLRTRNIRMVTIMSIILW-MTI 378

Query:   325 GMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSG-VC 383
              + Y+G+ L   +L  +++L+   +AL E+PA ++ + L+  L R+ S+     + G V 
Sbjct:   379 SVGYFGLSLDTPNLHGDVFLNCFLSALVEVPAYVLAWLLLRHLPRRYSMATALFLGGSVL 438

Query:   384 SVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFG 443
               + +V   ++    + L +V  F    AFS++ +YT EL+PT VRN  + +   A   G
Sbjct:   439 LFVQLVPPDLYYLATV-LVMVGKFGITAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLG 497

Query:   444 GVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDE 493
              + SP  +  G  + FL Y + G +  L  +  + LPE+  T L DT+D+
Sbjct:   498 SILSPYFIYLGAYDRFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQ 547

GO:0070715 "sodium-dependent organic cation transport" evidence=IEA

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IEA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MII8 SLC22A8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 434 (157.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 119/424 (28%), Positives = 201/424 (47%)

Query:    83 NSWSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSS-LGRKNXX 141
             + W++D+ +  SI++EWDL C S  +K L  S F  G L GGL+L  L+DS   GRK   
Sbjct:    97 DGWTYDVNSRDSIVAEWDLVCNSKKLKELAQSIFMAGILIGGLVLGALSDSCRFGRKPIL 156

Query:   142 XXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVG-S 200
                            FS     Y+V RF+ GFG + I    ++L+ E V  + R     +
Sbjct:   157 TCSYLLLAASGSGAAFSPTFPTYTVFRFLCGFGISGITLSTVILNVEWVSTRMRAIKSIA 216

Query:   201 IGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK 260
             +G+F +T G   LP +AY+     WR + L  SIP   + +L  +L  ES RW+ + GR 
Sbjct:   217 VGYF-YTFGQFVLPGLAYVI--PQWRWLQLTVSIPFFAFFLLSWWLP-ESIRWMVLSGRS 272

Query:   261 EEAVSIIKSIST----SENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLS- 315
              +A+  ++ ++      E  + L ++   ++ ++E        ++  L      LRR++ 
Sbjct:   273 SKALKTLRQVAAFNGKKEEGKKLSLEEIKLNTQKEVALAKAKRSVADLFRTP-VLRRMTF 331

Query:   316 AIMVTGFGIGMVYYGMPLGLGSLSFNLY-LSVTFNALSELPASLITFFLIGKLKRKSSLL 374
              + +  F  G  YY + +G+     NLY L + F  + ++PA  IT   I  L R ++  
Sbjct:   332 CLSLAWFSTGFAYYSLAMGVEEFGVNLYILQLIFGGV-DVPAKFITTLAISYLGRHTTEA 390

Query:   375 GFTIMSGVCSV-LCVVMGKIWTSVEIGLELVAFFSACTA--FSLLLIYTLELFPTCVRNS 431
                +++G C + L  V   + T   +   L  F   C +  FS L ++T EL+PT  R +
Sbjct:   391 ALLLLAGGCILSLIFVPADLMTLRTV---LAVFGKGCLSGSFSCLFLFTSELYPTVTRQT 447

Query:   432 AISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTM 491
              + +       G + +P++        F+   IFG +  L G   + LPET +  L +T+
Sbjct:   448 GMGISNMWARVGSMTAPLVKITAELKPFIPNVIFGSIALLGGSAALFLPETLNRPLPETI 507

Query:   492 DEEE 495
             ++ E
Sbjct:   508 EDVE 511

GO:0005452 "inorganic anion exchanger activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O76082 SLC22A5 "Solute carrier family 22 member 5" [Homo sapiens (taxid:9606)]

 Score = 448 (162.8 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 120/417 (28%), Positives = 205/417 (49%)

Query:    83 NSWSWDLQAHTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNXX 141
             + W +    + S I++EW+L C       L  S FF+G L G  I   L+D   GRKN  
Sbjct:   115 DGWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQLSDR-FGRKNVL 173

Query:   142 XXXXXXXXXXXXXTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSI 201
                           IFS N  ++ VL  + G G+ +    A VL TE++GK  R    ++
Sbjct:   174 FVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFSTL 233

Query:   202 GFFCF-TLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK 260
             G   F   G++ LP  AY  R   WR + +  ++P +L C+ + + + ESPRWL  QGR 
Sbjct:   234 GVCIFYAFGYMVLPLFAYFIR--DWRMLLVALTMPGVL-CVALWWFIPESPRWLISQGRF 290

Query:   261 EEAVSIIKSISTSEN--QRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIM 318
             EEA  II+  + +      S I D + +  +  +     ++ + +L  + W +R ++ + 
Sbjct:   291 EEAEVIIRKAAKANGIVVPSTIFDPSELQ-DLSSKKQQSHNILDLL--RTWNIRMVTIMS 347

Query:   319 VT-GFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFT 377
             +     I + Y+G+ L   +L  +++++   +A+ E+PA ++ + L+  L R+ S+    
Sbjct:   348 IMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRYSMATAL 407

Query:   378 IMSG-VCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMV 436
              + G V   + +V   ++    + L +V  F    AFS++ +YT EL+PT VRN  + + 
Sbjct:   408 FLGGSVLLFMQLVPPDLYYLATV-LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVS 466

Query:   437 RQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDE 493
               A   G + SP  V  G  + FL Y + G +  L  +  + LPE+  T L DT+D+
Sbjct:   467 STASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQ 523

GO:0005524 "ATP binding" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0042895 "antibiotic transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IC;TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0070715 "sodium-dependent organic cation transport" evidence=IDA

GO:0015651 "quaternary ammonium group transmembrane transporter activity" evidence=IDA

GO:0015697 "quaternary ammonium group transport" evidence=IDA

GO:0015879 "carnitine transport" evidence=IMP;IDA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IMP;IDA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0052106 "quorum sensing involved in interaction with host" evidence=IMP

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0031526 "brush border membrane" evidence=ISS;IDA

GO:0015893 "drug transport" evidence=IC

GO:0015238 "drug transmembrane transporter activity" evidence=IC

GO:0060731 "positive regulation of intestinal epithelial structure maintenance" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SA38	OCT3_ARATH	No assigned EC number	0.6666	0.9744	0.9575	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	509
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-112
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-24
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-19
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-18
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-17
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-15
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	6e-12
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-08
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	5e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-06
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-05
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	2e-05
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	7e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	7e-05
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-04
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	4e-04
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	7e-04
PRK15403	413	PRK15403, PRK15403, multidrug efflux system protei	0.002
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	0.002
PRK03633	381	PRK03633, PRK03633, putative MFS family transporte	0.002
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	0.003

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  341 bits (878), Expect = e-112
 Identities = 145/439 (33%), Positives = 226/439 (51%), Gaps = 10/439 (2%)

Query: 56  VFTDAEPTWHCTDDSCNGVSNLCQLPK--NSWSWDLQAHTS-IISEWDLECASSLIKGLP 112
           V   A P+    +        L       + W +     +S I++EWDL C  +    L 
Sbjct: 73  VDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLT 132

Query: 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING 172
            S FF+G L G  +   L+D   GRK +L LS L+ +VS +LT FS N  ++ V R + G
Sbjct: 133 QSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

Query: 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYT 232
            G   I   A+VL+TE + KK+R  VG++    F+LG + LP +AY      WR + L  
Sbjct: 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLAV 249

Query: 233 SIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQE- 291
           S+PT L+ +L  + V ESPRWL  QGR EEA+ I++ I+   N + L  +  ++S E++ 
Sbjct: 250 SLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAK-INGKKLPAEVLSLSLEKDL 307

Query: 292 TWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNAL 351
           + +   YS +  L       +    +M+  F     YYG+ L LG+L  N+YL +  + L
Sbjct: 308 SSSKKQYSFLD-LFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGL 366

Query: 352 SELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACT 411
            ELPA LIT  LI +L R+ ++    +++GV  +L + +      +   L ++  F   +
Sbjct: 367 VELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS 426

Query: 412 AFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGL 471
           AF ++ +YT EL+PT VRN  + +       G + SP LV  G +  FL   +FG +  L
Sbjct: 427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALL 486

Query: 472 CGLFVIGLPETRDTQLSDT 490
            G+  + LPET+   L +T
Sbjct: 487 AGILTLFLPETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  105 bits (264), Expect = 2e-24
 Identities = 98/427 (22%), Positives = 157/427 (36%), Gaps = 57/427 (13%)

Query: 92  HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS 151
             ++ S      ++ L  GL  S F +GCL G L    L D   GRK  L +  ++  + 
Sbjct: 32  FGALTSIGACAASTVLS-GLIVSIFSVGCLIGSLFAGKLGDR-FGRKKSLLIGNVLFVIG 89

Query: 152 CLLTIFST--NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLG 209
            LL  F+   + ++  V R I G G   I     +  +E+  KK RG +GS+     T G
Sbjct: 90  ALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFG 149

Query: 210 FL----SLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAV- 264
            L        +   +    WR       +P IL  ++    + ESPRWL ++G+ EEA  
Sbjct: 150 ILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAIL-LLIGLLFLPESPRWLVLKGKLEEARA 208

Query: 265 SIIKSISTSENQRSL--IMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGF 322
            + K    S+  + +    D    S E E       ++   L   K   +RL        
Sbjct: 209 VLAKLRGVSDVDQEIQEEKDSLERSVEAEK------ASWLELFRGKTVRQRLL------- 255

Query: 323 GIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITF--------------FLIGKLK 368
            +G++        G  +   Y    F  L    + L+T               FL+ +  
Sbjct: 256 -MGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFG 314

Query: 369 RKS-SLLGFTIMSGVCSVLCVVMGKIWTSVE-----IGLELVAFFSACTAFSLLLI---Y 419
           R+   LLG   M+    VL V    +  +       + +  +  F A  A     +    
Sbjct: 315 RRPLLLLGAAGMAICFLVLGVA--LLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVI 372

Query: 420 TLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVI-- 477
             ELFP  VR  A+++   A          L         +   +F +  GL  LF++  
Sbjct: 373 VSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGA--IGGYVFLVFAGLLVLFILFV 430

Query: 478 --GLPET 482
              +PET
Sbjct: 431 FFFVPET 437

Length = 449

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 87/372 (23%), Positives = 144/372 (38%), Gaps = 31/372 (8%)

Query: 94  SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCL 153
           +I +EW L+       G   S+  +G   G L    LAD  +GR+ +L  S L+ SV  L
Sbjct: 42  AISAEWGLDPVQL---GFLFSAGLIGMAFGALFFGPLADR-IGRRRVLLWSILLFSVFTL 97

Query: 154 LTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLG---- 209
           L   +TN+    +LRF+ G G   +      L +E   K+ RG    + F  + +G    
Sbjct: 98  LCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG 157

Query: 210 -FLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK 268
            FL+   I        WR ++    I  +L  +L+   + ES  +L    ++ E V  I 
Sbjct: 158 GFLAGWLIPVF----GWRSLFYVGGIAPLLLLLLLMRFLPESIDFL--VSKRPETVRRIV 211

Query: 269 SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVY 328
           +    + Q             Q T      S  K L + K A   +   ++    +  VY
Sbjct: 212 NAIAPQMQAEAQSALPEQKATQGTKR----SVFKALFQGKTARITVLLWLLYFMLLVGVY 267

Query: 329 YG---MPLGLGSLSFNLYLSVTFNALSELPA---SLITFFLIGKLKRKSSLLGFTIMSGV 382
           +    +P  +  L F+L L+ T  AL        S+I  +L  +L  + + L   +    
Sbjct: 268 FLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG--- 324

Query: 383 CSVLCVVMGKIWTSVEIGLELVAFFSACT--AFSLLLIYTLELFPTCVRNSAISMVRQAL 440
            +V  V++G    S  + L L A          S L       +PT +R + +       
Sbjct: 325 -AVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIG 383

Query: 441 VFGGVFSPVLVA 452
             G +  P+L  
Sbjct: 384 RLGAIIGPILAG 395

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 88/420 (20%), Positives = 163/420 (38%), Gaps = 39/420 (9%)

Query: 104 ASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTN 160
            SS + GL  S F +G   G L    L+D   GRK  L +  L+  +  +L     F+ +
Sbjct: 68  YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFALS 126

Query: 161 MWIYSVLRFINGFGRATIGTCAIVLST-ELVGKKRRGQVGSIGFFCFTLG----FLSLPA 215
           + +  V R + G G   I +  + +   E+  K  RG + S+     T G    +     
Sbjct: 127 VEMLIVGRVLLGIG-VGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG 185

Query: 216 IAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI--STS 273
              +N    WR       IP  L  + + F + ESPRWL  +GR EEA   +  +  ++ 
Sbjct: 186 KVSLNNTLGWRIPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSG 244

Query: 274 ENQRSL-IMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGF----GIGMVY 328
           E++  L  ++  ++    E  +V           ++   R    +++  F    GI  + 
Sbjct: 245 EDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIM 304

Query: 329 YGMPLGLGSLSFNLYLSVTFNALS---ELPASLITFFLIGKLKRKSSLL-GFTIMSGVCS 384
           Y  P    +   +   +   + +        + +  FL+ +  R+  LL G   M+ +C 
Sbjct: 305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMA-ICL 363

Query: 385 VLCVVMGKIWTSVE------IGLELVAFFSACTAFSLL---LIYTLELFPTCVRNSAISM 435
            +  ++G  + +        + +  +  F A  A        +   E+FP  +R   IS+
Sbjct: 364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISI 423

Query: 436 VRQALVFG----GVFSPVLV-AAGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDT 490
              A        G   P ++ + G    F+ +G   ++  +   F   LPET+   L + 
Sbjct: 424 AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF--LPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 69/350 (19%), Positives = 130/350 (37%), Gaps = 37/350 (10%)

Query: 104 ASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWI 163
            S    GL  ++F +G      +   L+D   GR+ +L +  L+ ++  LL +F++++W+
Sbjct: 29  ISPTEIGLLLTAFSLGYALAQPLAGRLSDR-FGRRRVLLIGLLLFALGLLLLLFASSLWL 87

Query: 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG 222
             VLR + G G   +   A  L  +    + RG+   +    F LG    P +   +   
Sbjct: 88  LLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASL 147

Query: 223 SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMD 282
             WR  +L  +I  +L  +L   L+   P         EEA + +               
Sbjct: 148 FGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKL--------- 198

Query: 283 FNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNL 342
                                 + +   L  L A+++ GF    +   +PL    L  + 
Sbjct: 199 ----------------------LLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSA 236

Query: 343 YLSVTFNALSELPASLITFF---LIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI 399
            L+     L+ L  ++       L  +L R+  LL   ++  + ++   ++    +S+ +
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296

Query: 400 GLELVAF-FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSP 448
            + L+   F A   F  L     +L P   R +A  +   A   GG   P
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 78/380 (20%), Positives = 133/380 (35%), Gaps = 61/380 (16%)

Query: 104 ASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWI 163
            S+   GL  S+F +G   G L+   L+D   GR+ +L L  L+ ++  LL  F++++W+
Sbjct: 31  LSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFASSLWL 89

Query: 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRG 222
             V RF+ G G   +   A  L  E    K RG+   +    F LG L  P +   +   
Sbjct: 90  LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149

Query: 223 SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMD 282
             WR ++L  +I  +L  +L+ FL+R                                  
Sbjct: 150 LGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFF------------------------ 185

Query: 283 FNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNL 342
                     +   L      L E        + ++++ FG+G +               
Sbjct: 186 -----LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGI--------------- 225

Query: 343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLE 402
                         +L+   L  +L R+  LL   ++     +L + +      + + L 
Sbjct: 226 ------------LGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL 273

Query: 403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNN--FL 460
           L+ F     AF  LL    EL P   R +A  +       GG   P+L            
Sbjct: 274 LLGFGLGF-AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG 332

Query: 461 SYGIFGLVIGLCGLFVIGLP 480
            + I   +  L  L ++ LP
Sbjct: 333 VFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 85/433 (19%), Positives = 173/433 (39%), Gaps = 60/433 (13%)

Query: 102 ECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCL------LT 155
           E A++ + G   +S  +GC+ GG +    + +  GR++ L ++ ++  +S L        
Sbjct: 50  ESAANSLLGFCVASALIGCIIGGALGGYCS-NRFGRRDSLKIAAVLFFISALGSAWPEFG 108

Query: 156 IFSTN------MWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLG 209
             S        +  + + R I G G       + +   E+     RG++ S   F    G
Sbjct: 109 FTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168

Query: 210 FLSLPAIAY-INRGSS--------WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK 260
            L +  + Y I R           WR ++   +IP +L+ +L+ + V E+PR+L  +G++
Sbjct: 169 QLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQ 227

Query: 261 EEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT 320
           E+A  I++ I  +      + +  +           L      ++        +  +M++
Sbjct: 228 EQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVI--------VIGVMLS 279

Query: 321 GF----GIGMVYYGMPL---GLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSL 373
            F    GI +V Y  P     LG+ +    L      +  L  +++    + K  RK   
Sbjct: 280 VFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 339

Query: 374 LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA--FFSACTAFS---LLLIYTLELFPTCV 428
           +   +  G+   +  +    +T     + L++  F+ A  A S   +  +   E+FP  +
Sbjct: 340 IIGAL--GMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 397

Query: 429 RNSAISMVRQALVFGGVFS-------PVL----VAAGRQNNFLSYGIFGLVIGLCGLFVI 477
           R  A+++   A+    + +       P++          +N  SY I+G +  L  LF+ 
Sbjct: 398 RGKALAI---AVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454

Query: 478 GL-PETRDTQLSD 489
              PET+   L +
Sbjct: 455 KFVPETKGKTLEE 467

Length = 479

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 7/143 (4%)

Query: 122 AGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTC 181
            G L+     D   GR+  +  S ++ S   L   F+       + R + G G       
Sbjct: 62  FGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGS 120

Query: 182 AIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN----RGSSWRRIYLYTSIPTI 237
           +     E   K  R +   +    + +G + + A  Y       G  WR ++  + +P I
Sbjct: 121 SAAYVIESWPKHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWGDGWRALFFISILPII 179

Query: 238 LYCILVRFLVRESPRWLFIQGRK 260
              + +R  + E+  W      K
Sbjct: 180 F-ALWLRKNIPEAEDWKEKHAGK 201

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 83/400 (20%), Positives = 138/400 (34%), Gaps = 85/400 (21%)

Query: 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS-----CLLTIFSTNMW---IY 164
           A+ F    L G ++     D  +GRK  L ++ LMM +       L +  +  +W   + 
Sbjct: 42  AAGFLARPL-GAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILL 99

Query: 165 SVLRFINGFGR-ATIGTCAIVLSTELVGKKRRGQVGS-------IGFFCFTLGFLSLPAI 216
            + R I GF      G  A+ L+ E     +RG  GS       +G     L  L L  +
Sbjct: 100 LLARLIQGFSLGGEWGGAALYLA-EYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158

Query: 217 AYINRGSSWR-RIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSEN 275
              +    W  RI    S   +L  + +R  + E+P +   Q + ++    I    T   
Sbjct: 159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTK-- 216

Query: 276 QRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG--MVYYGMPL 333
                                                R   ++  G  I     +Y +  
Sbjct: 217 ------------------------------------HRKPFLLGLGLVIATTTTFYLITT 240

Query: 334 GLGSLSFNLYLSVTFN-----ALSELPASLITFF--------LIGKLKRKSSLLGFTIMS 380
            L +     YL+ T       AL  L  SLI FF        L  ++ R+  L+ FT+++
Sbjct: 241 YLPT-----YLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLA 295

Query: 381 GVCSVLCVVM--GKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQ 438
            + +V  ++        ++   L L            +  +  ELFPT VR +  S+   
Sbjct: 296 ALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAYN 355

Query: 439 -ALVFGGVFSPVLVAAGRQNNFL---SYGIFGLVIGLCGL 474
            A    G F+P  +AA          + G +   + L GL
Sbjct: 356 LAGAIFGGFAPY-IAAALVAMTGDWYAIGYYLAALALIGL 394

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 21/190 (11%)

Query: 97  SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI 156
           +E DL C     KG+     ++G + G      LAD  LGRK  L +   +       + 
Sbjct: 193 AEKDL-CIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSS 250

Query: 157 FSTNMWIYSVLRFINGFGRATIGTCAIVLS--TELVGKKRRGQVGSIGFFCFTLGFLSLP 214
           F      +   R ++GFG    G   IV S   E + +++RG+  S     + +G +   
Sbjct: 251 FVQGYGFFLFCRLLSGFGIG--GAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAA 308

Query: 215 AIAY---------INRGS-----SWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK 260
           A+A+            GS     SWR   +  + P +     + F+  ESPR+    G+ 
Sbjct: 309 AMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM-PESPRFFLENGKH 367

Query: 261 EEAVSIIKSI 270
           +EA  I+K I
Sbjct: 368 DEAWMILKLI 377

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 2/138 (1%)

Query: 114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF 173
           + + +G L    +   L D   GRK +L +   +  +S  +   S+N+ +  + RF+ GF
Sbjct: 5   AGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGF 63

Query: 174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGF-LSLPAIAYINRGSSWRRIYLYT 232
           G A        L  ++   + RG    +      LG  L  P    + +   WR  +L+ 
Sbjct: 64  GAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123

Query: 233 SIPTILYCILVRFLVRES 250
           +I  +   IL+ FL+ E+
Sbjct: 124 AILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 99/468 (21%), Positives = 168/468 (35%), Gaps = 108/468 (23%)

Query: 104 ASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--- 160
            S+ + G    S  +G LAG L    LAD  LGRK +  +  ++M ++ + +  S     
Sbjct: 57  VSAAVNG----SASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSP 111

Query: 161 ----MWIYSVLRFINGFGRATIG----TCAIVLSTELVGKKRRGQ--------------V 198
                 +    RF  G G   IG      AI+ S E   KK RG                
Sbjct: 112 KSVMATLC-FWRFWLGVG---IGGDYPLSAIITS-EFATKKWRGAMMAAVFAMQGFGILA 166

Query: 199 GSIGFFCFTLGFL-SLPAIAYINR---------GSSWRRIYLYTSIPTILYCILVRFLVR 248
           G+I       GF  SL A A                WR +  + ++P +L  +  R  + 
Sbjct: 167 GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL-ALYFRLTIP 225

Query: 249 ESPRWLFIQGRKEE-AVSIIKSISTSE---NQRSLIMDFNNVSFEQETWNVDLYSAIKIL 304
           E+PR+     +  E A S + ++   +       +      V   + +W+ D ++     
Sbjct: 226 ETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWS-DFFT----- 279

Query: 305 VEKKWALRR----LSAIMVTGFGIGMVYYGMPLGLGSL-----------SFNLYLSVTFN 349
               +   R    L     + F + + +YG+ L    +           + N Y  +   
Sbjct: 280 ---HFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKT 336

Query: 350 ALSEL--------PASLITFFLIGKLKRKS-SLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400
           A+  L        P   +T FL+  + RK   L+GF I++    VL  V+G  +    + 
Sbjct: 337 AVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILT----VLFFVLGFAYN--HLS 390

Query: 401 LE-LVAFFSACTAF------SLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453
               +A +     F      +   I   E+FPT  R++A  +   +   G +        
Sbjct: 391 THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLY 450

Query: 454 GRQNNFLSYG------------IFGLVIGLCGLFVIGLPETRDTQLSD 489
             Q+   + G            IF L + L  LF + +PET+   L +
Sbjct: 451 LAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEE 498

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF 173
           + + +G  AG L+   L+D   GR+ +L L   + ++S L    S N+    VLRF+  F
Sbjct: 47  TLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAF 105

Query: 174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-----YINRGSSWRRI 228
           G     +   V+S  LV     G+  S  +          PA+A     YI    SW  I
Sbjct: 106 G----ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAI 161

Query: 229 YLYTSIPTILYCILVRFLVRES 250
           + + S+  IL   L+ F++ E+
Sbjct: 162 FAFLSLAGILLSALIFFILPET 183

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 44.5 bits (106), Expect = 7e-05
 Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169
           G   +++ +G   G  +LA L    L R+ +L     +  VS LL+  + +  +  + R 
Sbjct: 51  GQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLG-FLSLPAIAYINRGSSWRRI 228
           + G       + A  L+  LV   +RG+  ++ F   TL   L +P   ++ +   WR  
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169

Query: 229 YLYTSIPTILYCILVRFLV 247
           +L  ++  +L  +L+  L+
Sbjct: 170 FLAIAVLALLALLLLWKLL 188

Length = 394

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 2/144 (1%)

Query: 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169
           G   S+F  G + G            G +  L +  ++  V   L  F+       +LR 
Sbjct: 32  GYVFSAFSWGYVVGQ-FPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV 90

Query: 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRGSSWRRI 228
           + G   A      I++         R    SI      LG +    +   I    SW+  
Sbjct: 91  LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWA 150

Query: 229 YLYTSIPTILYCILVRFLVRESPR 252
           ++   +  I++ +L    + + P+
Sbjct: 151 FIIEGVLGIIWGVLWLKFIPDPPQ 174

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169
           GL  SSF +       ++ +++D S   +  L +  ++ ++  L   FST++W+ + L  
Sbjct: 33  GLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWA 91

Query: 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSI---GFFCFTLGFLSLPAIAYINRGSSWR 226
           +NG  +           T+   +  RG   S           G L    +  I    SW 
Sbjct: 92  LNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHN-VGGGLLPPLVLFGIAELYSWH 150

Query: 227 RIYLYTSIPTILYCILVRFLVRESPR 252
            +++   I  I+  ++   L+R+SP+
Sbjct: 151 WVFIVPGIIAIIVSLICFLLLRDSPQ 176

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 15/143 (10%)

Query: 114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMS-VSCLLTIFSTNMWIYSVLRFING 172
           S F MG          L+D S  R  M F   L++S +  +L  FS ++++++VL  +NG
Sbjct: 80  SKFVMG---------VLSDRSNPRYFMAFG--LILSAIVNILFGFSPSLFLFAVLWVLNG 128

Query: 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI---AYINRGSSWRRIY 229
           + +           T    +K RG   SI      +G    P +   A+      WR  +
Sbjct: 129 WFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAF 188

Query: 230 LYTSIPTILYCILVRFLVRESPR 252
            +  I  I+  +++ FL+R+ P+
Sbjct: 189 YFPGIIAIIVALILLFLLRDRPQ 211

Length = 448

>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)

Query: 121 LAGGL----ILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA 176
           LAGG+    +L  L+D  +GR+ +L    L+ +++C  T+F+T+M  + + RFI G    
Sbjct: 61  LAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSIC 119

Query: 177 TIGTCAIVLSTELVGKKR 194
            I T   V   E  G+ +
Sbjct: 120 FIATVGYVTVQEAFGQTK 137

Length = 413

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 115 SFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG 174
           S F+   A G +L        GRK +L     + ++  L  ++  +     VLRF+   G
Sbjct: 48  SLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG 107

Length = 401

>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169
           G+ +SS+F G L G L+   +    +G     +L+ L+ +  C         W +   RF
Sbjct: 44  GVVSSSYFTGNLVGTLLAGYVI-KRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRF 102

Query: 170 INGFGRATI 178
           + G G A I
Sbjct: 103 VAGIGCAMI 111

Length = 381

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING 172
           A++ F+G   GG +   LAD   GRK ++  S +  SV   L+  ++ + + ++ RFI G
Sbjct: 59  ATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVG 117

Query: 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLG-FLSLPAIAYINRGSSWRRIYLY 231
            G A    CA   + E   K  + +  +     F +G  ++   +        WR  +  
Sbjct: 118 MGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177

Query: 232 TSIPTILYCILVRFLVRESPRW 253
             +P +L  I +R    ES  W
Sbjct: 178 GLLP-VLLVIYIRARAPESKEW 198

Length = 426

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	509
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	99.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PRK10504	471	putative transporter; Provisional	99.97
KOG2533	495	consensus Permease of the major facilitator superf	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.97
PRK03699	394	putative transporter; Provisional	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK12382	392	putative transporter; Provisional	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
PRK09874	408	drug efflux system protein MdtG; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.96
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PRK10054	395	putative transporter; Provisional	99.96
PRK11010	491	ampG muropeptide transporter; Validated	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.94
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.94
TIGR00901	356	2A0125 AmpG-related permease.	99.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.94
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.93
PRK09528	420	lacY galactoside permease; Reviewed	99.93
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.93
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.92
PTZ00207	591	hypothetical protein; Provisional	99.92
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.91
TIGR00805	633	oat sodium-independent organic anion transporter.	99.91
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.9
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.9
KOG2615	451	consensus Permease of the major facilitator superf	99.9
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.88
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.88
PRK09669	444	putative symporter YagG; Provisional	99.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.87
PRK10429	473	melibiose:sodium symporter; Provisional	99.85
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.85
PRK09848	448	glucuronide transporter; Provisional	99.83
PRK11462	460	putative transporter; Provisional	99.83
COG2211	467	MelB Na+/melibiose symporter and related transport	99.83
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.83
PF13347	428	MFS_2: MFS/sugar transport protein	99.82
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.8
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.8
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.78
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.72
KOG2563	480	consensus Permease of the major facilitator superf	99.71
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.58
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.58
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.56
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.55
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.51
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.49
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.44
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.39
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.37
KOG3626	735	consensus Organic anion transporter [Secondary met	99.36
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.34
PRK15011	393	sugar efflux transporter B; Provisional	99.33
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.31
PRK10489	417	enterobactin exporter EntS; Provisional	99.31
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.3
PRK05122	399	major facilitator superfamily transporter; Provisi	99.29
PRK09874	408	drug efflux system protein MdtG; Provisional	99.29
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.28
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.28
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.27
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.26
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.24
PRK10054	395	putative transporter; Provisional	99.23
PRK03545	390	putative arabinose transporter; Provisional	99.23
PRK12382	392	putative transporter; Provisional	99.23
TIGR00900	365	2A0121 H+ Antiporter protein.	99.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.19
PRK11663	434	regulatory protein UhpC; Provisional	99.18
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.17
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.17
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.17
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.17
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.16
TIGR00891	405	2A0112 putative sialic acid transporter.	99.15
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.14
TIGR00893	399	2A0114 d-galactonate transporter.	99.13
PRK03633	381	putative MFS family transporter protein; Provision	99.13
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.13
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.12
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.12
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.11
PRK10091	382	MFS transport protein AraJ; Provisional	99.11
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.1
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.09
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.09
TIGR00895	398	2A0115 benzoate transport.	99.08
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.08
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.08
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.07
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.06
PRK12307	426	putative sialic acid transporter; Provisional	99.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.05
PRK09705	393	cynX putative cyanate transporter; Provisional	99.05
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.05
TIGR00898	505	2A0119 cation transport protein.	99.04
PLN00028	476	nitrate transmembrane transporter; Provisional	99.04
PRK03893	496	putative sialic acid transporter; Provisional	99.04
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.04
PRK09952	438	shikimate transporter; Provisional	99.04
PRK10504	471	putative transporter; Provisional	99.03
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.03
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.03
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.02
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.0
PRK03699	394	putative transporter; Provisional	99.0
KOG3762	618	consensus Predicted transporter [General function	99.0
PRK11043	401	putative transporter; Provisional	98.99
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.99
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.96
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.96
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.95
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.95
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.94
PRK11902	402	ampG muropeptide transporter; Reviewed	98.94
PRK15075	434	citrate-proton symporter; Provisional	98.93
PRK11010	491	ampG muropeptide transporter; Validated	98.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.92
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.91
KOG2615	451	consensus Permease of the major facilitator superf	98.9
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.89
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.88
KOG0569	485	consensus Permease of the major facilitator superf	98.87
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.87
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.87
PTZ00207	591	hypothetical protein; Provisional	98.85
PRK10429	473	melibiose:sodium symporter; Provisional	98.85
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.84
TIGR00901	356	2A0125 AmpG-related permease.	98.82
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.81
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.79
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.79
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.78
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.78
PRK10133	438	L-fucose transporter; Provisional	98.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.78
PRK09848	448	glucuronide transporter; Provisional	98.76
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.74
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.73
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.72
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.7
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.68
TIGR00805	633	oat sodium-independent organic anion transporter.	98.68
COG2211	467	MelB Na+/melibiose symporter and related transport	98.67
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.67
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.67
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.65
PF13347	428	MFS_2: MFS/sugar transport protein	98.59
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.59
KOG3810	433	consensus Micronutrient transporters (folate trans	98.57
PRK09669	444	putative symporter YagG; Provisional	98.55
COG0477	338	ProP Permeases of the major facilitator superfamil	98.55
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.53
KOG2532	466	consensus Permease of the major facilitator superf	98.5
KOG2533	495	consensus Permease of the major facilitator superf	98.46
KOG0254	513	consensus Predicted transporter (major facilitator	98.46
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.46
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.44
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.44
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.42
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.38
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.38
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.33
KOG0637	498	consensus Sucrose transporter and related proteins	98.31
PRK11462	460	putative transporter; Provisional	98.28
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.25
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.18
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.15
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.14
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.12
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.11
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.07
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.06
COG3202	509	ATP/ADP translocase [Energy production and convers	98.06
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.05
KOG3762	618	consensus Predicted transporter [General function	98.02
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.79
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.75
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.66
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.66
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.6
KOG2563	480	consensus Permease of the major facilitator superf	97.32
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.22
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.21
PF12832	77	MFS_1_like: MFS_1 like family	97.16
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.11
PF12832	77	MFS_1_like: MFS_1 like family	97.08
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.08
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.03
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.89
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.68
KOG3880	409	consensus Predicted small molecule transporter inv	96.5
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.49
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.31
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.21
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.02
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.01
COG0477	338	ProP Permeases of the major facilitator superfamil	95.97
PRK03612	521	spermidine synthase; Provisional	95.41
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.51
KOG0637	498	consensus Sucrose transporter and related proteins	94.11
KOG3097	390	consensus Predicted membrane protein [Function unk	93.56
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.2
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	93.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.68
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.59
COG3202	509	ATP/ADP translocase [Energy production and convers	92.58
KOG2881	294	consensus Predicted membrane protein [Function unk	92.51
PRK03612	521	spermidine synthase; Provisional	92.12
KOG3626	735	consensus Organic anion transporter [Secondary met	91.86
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.24
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.75
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	88.51
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.3

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=8.5e-50  Score=403.65  Aligned_cols=457  Identities=32%  Similarity=0.553  Sum_probs=373.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCC-----------------ccCccCC----------
Q 040646           28 GDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNG-----------------VSNLCQL----------   80 (509)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-----------------~~~~c~~----------   80 (509)
                      |++||||+++++++++..++.+++.....|+...|+|+|..++..+                 .++.|..          
T Consensus         1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (505)
T TIGR00898         1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANPS   80 (505)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCcccCChHhHhceeccCCCCCCCCCCccccccchhhhc
Confidence            6899999999999999999999999999999999999997553110                 1123321          


Q ss_pred             -------------------CCCCceecCC-CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHH
Q 040646           81 -------------------PKNSWSWDLQ-AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNM  140 (509)
Q Consensus        81 -------------------~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~  140 (509)
                                         +.++|.|+.+ ..|.+.+|||++|+++.+.+++.+++.++..+++++.|+++|| +|||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~  159 (505)
T TIGR00898        81 LLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKV  159 (505)
T ss_pred             ccccccchhcccCCCCCCCCCCCcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHH
Confidence                               1346888864 5899999999999888899999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Q 040646          141 LFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN  220 (509)
Q Consensus       141 l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  220 (509)
                      ++++.++.++++++.++++|++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++++.
T Consensus       160 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  239 (505)
T TIGR00898       160 LLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI  239 (505)
T ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhH
Q 040646          221 RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA  300 (509)
Q Consensus       221 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (509)
                      .+  ||+.|++.+++.++..+. .+++||+|+|+..+++.+++.+.+++..+.+.. ....+..+...+++.++++++.+
T Consensus       240 ~~--wr~~~~~~~i~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  315 (505)
T TIGR00898       240 PD--WRWLQLAVSLPTFLFFLL-SWFVPESPRWLISQGRIEEALKILQRIAKINGK-KLPAEVLSLSLEKDLSSSKKQYS  315 (505)
T ss_pred             hH--HHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCC-CCCHHHHhhhhhhhhhhccCCCc
Confidence            55  999999999888876544 478999999999999999988888877653321 11111111110111111112346


Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHH
Q 040646          301 IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMS  380 (509)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~  380 (509)
                      .++++++|.++...+...+.++.....++.++.+.+..+.+......+.++..+++.++.+++.||+|||+.+.++.++.
T Consensus       316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~  395 (505)
T TIGR00898       316 FLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLA  395 (505)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            78999999988888888888888888888888888888888777777888899999999999999999999999988888


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchh
Q 040646          381 GVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFL  460 (509)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~  460 (509)
                      +++++++.+.+...........++..++....++..+.+..|.+|++.|++++|+.+....+|++++|.+.+....+...
T Consensus       396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~  475 (505)
T TIGR00898       396 GVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFL  475 (505)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence            88877776655443333444444555566667788889999999999999999999999999999999998854445566


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 040646          461 SYGIFGLVIGLCGLFVIGLPETRDTQLSD  489 (509)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (509)
                      .+.+++++.++++++.+++||+++++++|
T Consensus       476 ~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       476 PLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            77778887777777778889999887765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=8.2e-44  Score=362.44  Aligned_cols=427  Identities=20%  Similarity=0.287  Sum_probs=325.8

Q ss_pred             ChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceee
Q 040646           18 SLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIIS   97 (509)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~   97 (509)
                      .+|+++++ . .+++++|.++++++++.+.+++|...+.+.                                 +|.+.+
T Consensus       151 ~~d~~l~~-~-~~~~~~~~l~~i~~l~~~~~g~d~~~is~i---------------------------------lp~i~~  195 (742)
T TIGR01299       151 QYELIIQE-C-GHGRFQWALFFVLGLALMADGVEVFVVGFV---------------------------------LPSAEK  195 (742)
T ss_pred             HHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHH
Confidence            35666665 3 478999999999999999999999888775                                 899999


Q ss_pred             eeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccch
Q 040646           98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRAT  177 (509)
Q Consensus        98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~  177 (509)
                      +++++   ..+.+++.++++++.+++++++|+++|| +|||+++++++++.++++++++++++++.++++|++.|++.|+
T Consensus       196 ~~gls---~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~  271 (742)
T TIGR01299       196 DLCIP---DSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGG  271 (742)
T ss_pred             HhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99994   4578999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-Hhc-------------CCcchHHHHHHHhhHHHHHHHh
Q 040646          178 IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INR-------------GSSWRRIYLYTSIPTILYCILV  243 (509)
Q Consensus       178 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~-------------~~~wr~~f~~~~~~~~~~~~~~  243 (509)
                      ..+...+++.|++|+++|++.++++.+++.+|.++++.+++ +..             ..+||+.+++.+++.++. ++.
T Consensus       272 ~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~  350 (742)
T TIGR01299       272 AIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGA  350 (742)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHH
Confidence            99999999999999999999999999999999999988753 222             236999999988877764 466


Q ss_pred             heeecCchHHHHhcCCHHHHHHHHHHHHhhcCCcc-cccc------ccCccc-----ccccccc---------------c
Q 040646          244 RFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRS-LIMD------FNNVSF-----EQETWNV---------------D  296 (509)
Q Consensus       244 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~-----~~~~~~~---------------~  296 (509)
                      .+++||||+|+..+++.+++.+.++++.+.+.... ...+      .+....     +.+....               .
T Consensus       351 ~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (742)
T TIGR01299       351 LTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGG  430 (742)
T ss_pred             HHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhh
Confidence            68899999999999999999999998876332110 0000      000000     0000000               0


Q ss_pred             chhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC--------------------------------------
Q 040646          297 LYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL--------------------------------------  338 (509)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------  338 (509)
                      .+.+++++|+++ .++.++..++.|++..+.+|++..++..+                                      
T Consensus       431 ~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (742)
T TIGR01299       431 IWGNFLRCFNPE-VREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGG  509 (742)
T ss_pred             HHHHHHHHcCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhcccc
Confidence            112456666554 46777777778887777666643321100                                      


Q ss_pred             --------Cc----------------------------------------------------------------------
Q 040646          339 --------SF----------------------------------------------------------------------  340 (509)
Q Consensus       339 --------g~----------------------------------------------------------------------  340 (509)
                              |.                                                                      
T Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  589 (742)
T TIGR01299       510 EYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDG  589 (742)
T ss_pred             ccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCc
Confidence                    00                                                                      


Q ss_pred             ------hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhH
Q 040646          341 ------NLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFS  414 (509)
Q Consensus       341 ------~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (509)
                            .......+.+++.+++.+++++++||+|||+++.++.++.+++++++.+....  ...+++.++..++....++
T Consensus       590 ~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~--~~ll~~~~l~g~~~~~~~~  667 (742)
T TIGR01299       590 DDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE--SAMIALLCLFGGLSIAAWN  667 (742)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHH
Confidence                  01122345558889999999999999999999999988888888777664432  2233333344455556778


Q ss_pred             HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 040646          415 LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA-AGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQL  487 (509)
Q Consensus       415 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (509)
                      ...++++|++|++.|++++|+.+....+|++++|++.+ ........++.+.+++.++++++.+++||++++.+
T Consensus       668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l  741 (742)
T TIGR01299       668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            88999999999999999999999999999999999987 33334456677777777777777778899887653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=7.9e-42  Score=302.96  Aligned_cols=427  Identities=22%  Similarity=0.333  Sum_probs=346.5

Q ss_pred             CCCChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcc
Q 040646           15 SRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTS   94 (509)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~   94 (509)
                      ++...||+.+. + +|||+|+........+++.+.+..+...++                                 .|.
T Consensus        59 k~~tv~ea~~a-i-gfgrfq~yl~~~ag~gwmad~m~~m~~s~i---------------------------------~~~  103 (528)
T KOG0253|consen   59 KSFTVDEAMNA-I-GFGRFQWYLFFVAGMGWMADAMEMMLLSLI---------------------------------LPA  103 (528)
T ss_pred             ceeeehhhhhh-c-CcccchhhHHHHhhhHHHHHHHHHHHHHHH---------------------------------HHH
Confidence            34556777776 3 599999999999999999999999888886                                 789


Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG  174 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~  174 (509)
                      +.+.++.   +..|..++....+.|..+++..+|.++|+ +|||+.+.+..+..++...+.+.++|+..+.+.|.+.|+|
T Consensus       104 l~~~w~~---s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g  179 (528)
T KOG0253|consen  104 LDEVWGP---SEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFG  179 (528)
T ss_pred             HHhhhch---hhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhcc
Confidence            9999997   55689999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             cchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHhhHHHHHHHhheeecCchHH
Q 040646          175 RATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRGSSWRRIYLYTSIPTILYCILVRFLVRESPRW  253 (509)
Q Consensus       175 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~  253 (509)
                      .|+ .|...++-.|.-|..+|+..+-.. ..+.+|.++...+++ .+.+.||||.....+.+..+.+ ...+++|||||+
T Consensus       180 ~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpRf  256 (528)
T KOG0253|consen  180 VGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPRF  256 (528)
T ss_pred             CCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcch
Confidence            999 888899999999999999888777 999999999999975 5678899999998887777755 556889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCcccccc---------cc----CcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646          254 LFIQGRKEEAVSIIKSISTSENQRSLIMD---------FN----NVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT  320 (509)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  320 (509)
                      ...+++.+++.+.++++++. |+...+..         .+    +.+..+.+..++......+++ .|.+++..+.....
T Consensus       257 ~~~~G~~~kAletL~kiArm-Ng~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~i  334 (528)
T KOG0253|consen  257 YLAKGDDYKALETLHKIARM-NGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRI  334 (528)
T ss_pred             hhhcCChHHHHHHHHHHHHh-cCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhc-ChHHHHHHHHHHHH
Confidence            99999999999999999873 32221110         00    011111112233344566666 45667888888889


Q ss_pred             HHHHhHhhhccccccccC---C------------------------chHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHH
Q 040646          321 GFGIGMVYYGMPLGLGSL---S------------------------FNLYLSVTFNALSELPASLITFFLIGKLKRKSSL  373 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~---g------------------------~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~  373 (509)
                      |+++.+.||++.+...++   |                        ...+.-..+.++..++|.++.+++.||+|||+.+
T Consensus       335 wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTM  414 (528)
T KOG0253|consen  335 WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTM  414 (528)
T ss_pred             HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHH
Confidence            999888888754322110   0                        0123345677799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          374 LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      ....++.+++.+++......+  ....+.+.+.++..+.+...++|.+|++|+..|+++.|.+..+..+|+++.|++.-.
T Consensus       415 al~l~~f~iflfll~~c~~rn--~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~  492 (528)
T KOG0253|consen  415 ALSLILFGIFLFLLTTCKTRN--AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMR  492 (528)
T ss_pred             HHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHH
Confidence            999999988887777744433  333445566677778889999999999999999999999999999999999999965


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHhhcc-CCCCCCC
Q 040646          454 GRQNNFLSYGIFGLVIGLCGLFVIGLP-ETRDTQL  487 (509)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  487 (509)
                      .......+..+++.+++++.+...++| |+|+|.+
T Consensus       493 ~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  493 AELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            566677788889998888888887777 8888764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=6.7e-40  Score=331.85  Aligned_cols=474  Identities=31%  Similarity=0.517  Sum_probs=378.1

Q ss_pred             ChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcccc--------CCCCCCcc--------------
Q 040646           18 SLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCT--------DDSCNGVS--------------   75 (509)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--------~~~~~~~~--------------   75 (509)
                      +.|+..+. .|+++++|.....+.+........+.....+....|.++|.        .+.|....              
T Consensus         2 ~~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~   80 (521)
T KOG0255|consen    2 DLDEILSS-VGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCTEWGCLNDAEDSCLVYWDPTLDPANPLNWPS   80 (521)
T ss_pred             chHHHHHH-hcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhhhhhcccCCcccceecccCccCcCCcccccc
Confidence            44566664 88999999999999999999998888999999999987663        33344321              


Q ss_pred             -----CccCCCCCCceecCCC-CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHH
Q 040646           76 -----NLCQLPKNSWSWDLQA-HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMS  149 (509)
Q Consensus        76 -----~~c~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~  149 (509)
                           ..+..++++|.|+.+. .-++..|+++.|++.....+..+++++|..+|++++|+++|| +|||++++.++++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~  159 (521)
T KOG0255|consen   81 WKKWLLVIVICLDGWVYDYGSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFI  159 (521)
T ss_pred             ccccccccccccceeEecCCCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHH
Confidence                 1112346788888765 556677788888888999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHH
Q 040646          150 VSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIY  229 (509)
Q Consensus       150 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f  229 (509)
                      ++.++.++++|++.+++.|++.|++.++...+...++.|++++++|+.+..+....+..|.+..+..+++..  +||+.+
T Consensus       160 i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~  237 (521)
T KOG0255|consen  160 IFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR--DWRWLF  237 (521)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence            999999999999999999999999999999999999999999999999999944444444444444577777  599999


Q ss_pred             HHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCcccccccc-C--cccccccccccchhHHHHHHh
Q 040646          230 LYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFN-N--VSFEQETWNVDLYSAIKILVE  306 (509)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~  306 (509)
                      ++..++.++..+. +++.||+|+|+..+++.+++.+.+++..+.++......+.. .  ...+......++...+.++++
T Consensus       238 ~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  316 (521)
T KOG0255|consen  238 WIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFR  316 (521)
T ss_pred             HHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhc
Confidence            9999999886544 66777999999999999999999998876432111111111 1  111111122223345889999


Q ss_pred             chHHHHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 040646          307 KKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVL  386 (509)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~  386 (509)
                      .|..++..+...+.++.....++++++....+|.+.+....+.+....++....+...|++|||.....+..+..+++++
T Consensus       317 ~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~  396 (521)
T KOG0255|consen  317 TPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLL  396 (521)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            99888899999999999999999999999999999998888888888999999999999999999999999999999888


Q ss_pred             HHHhccchh-HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc-ccchhHHHH
Q 040646          387 CVVMGKIWT-SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR-QNNFLSYGI  464 (509)
Q Consensus       387 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~-~~~~~~~~~  464 (509)
                      ..+...... +....+..++.++.+..+...+.+..|.+|+..|..+.+..+....+|++++|.+..... ......+.+
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~  476 (521)
T KOG0255|consen  397 FGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL  476 (521)
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence            888665444 244555666667777777888999999999999999999999999999999999986332 223333333


Q ss_pred             HHHHHHHHHHHH-hhccCCCCCCCcccHHHHHH
Q 040646          465 FGLVIGLCGLFV-IGLPETRDTQLSDTMDEEEY  496 (509)
Q Consensus       465 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  496 (509)
                      ++....+.+.+. .++||++++.+.+..++.++
T Consensus       477 ~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~  509 (521)
T KOG0255|consen  477 FGWLALLLGLLSLLLLPETKGKPLPGTLLDAEN  509 (521)
T ss_pred             HHHHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence            455555555554 88999999999887766663

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.2e-40  Score=335.31  Aligned_cols=422  Identities=19%  Similarity=0.213  Sum_probs=293.5

Q ss_pred             CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeee-ccc-cccc
Q 040646           29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEW-DLE-CASS  106 (509)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~-~~~-~~~~  106 (509)
                      +++++|++++.+++++.+.+++|....+..                                 .|.+..++ +.+ ..++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~   55 (502)
T TIGR00887         9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLV---------------------------------TKMLGYVYYHGKGPLPS   55 (502)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhccCcccchH
Confidence            589999999999999999999999888775                                 34443321 100 0133


Q ss_pred             cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHhhccchhhh
Q 040646          107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN------MWIYSVLRFINGFGRATIGT  180 (509)
Q Consensus       107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~  180 (509)
                      .+.+++.+.+.+++.++++++|+++|| +|||+++.++.++..+++++++++++      ++.++++|++.|++.|...+
T Consensus        56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        56 SVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            467899999999999999999999999 99999999999999999999998875      78999999999999999999


Q ss_pred             hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-Hhc-----------------------CCcchHHHHHHHhhH
Q 040646          181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INR-----------------------GSSWRRIYLYTSIPT  236 (509)
Q Consensus       181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~-----------------------~~~wr~~f~~~~~~~  236 (509)
                      ....++.|++|+++|++++++.+....+|.++++.++. +..                       +.+||++|.+.++++
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~  214 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA  214 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888753 211                       247999999888888


Q ss_pred             HHHHHHhheeecCchHHHHhcCCHH-HHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhch---HHHH
Q 040646          237 ILYCILVRFLVRESPRWLFIQGRKE-EAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKK---WALR  312 (509)
Q Consensus       237 ~~~~~~~~~~~~esp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~  312 (509)
                      ++.. +..+++||||+|+..+++.+ ++.+.+.+....+.+ +..++.++.+   ++ ++....+++++++++   ..++
T Consensus       215 ~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~  288 (502)
T TIGR00887       215 LLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE-AEPDEVEKAS---TA-VEVPKASWSDFFTHFFKWRHGK  288 (502)
T ss_pred             HHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc-cCcccccchh---cc-ccchhhhHHHHHHHHhhhHHHH
Confidence            7744 55678999999998887764 355555554431111 1111111110   00 111123577777642   2223


Q ss_pred             HHHHHHHHHHHHhHhhhc----cccccccCCchHH--------------H-HHHHHHhhhhhHHHHHHHHhhhcCchhHH
Q 040646          313 RLSAIMVTGFGIGMVYYG----MPLGLGSLSFNLY--------------L-SVTFNALSELPASLITFFLIGKLKRKSSL  373 (509)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~--------------~-~~~~~~~~~~~~~~~~g~l~dr~gr~~~~  373 (509)
                      ..+.....+++....+|.    .|.++++.|.+..              . ...+..++.+++.+++++++||+|||+++
T Consensus       289 ~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l  368 (502)
T TIGR00887       289 HLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ  368 (502)
T ss_pred             HHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH
Confidence            333333444444444444    3444445554311              0 12233356777889999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646          374 LGFTIMSGVCSVLCVVMGKI--WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV  451 (509)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~  451 (509)
                      +.+..+.++++.++......  .........+...+......+..+.+..|.+|++.|+++.|+.+..+.+|++++|.+.
T Consensus       369 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~  448 (502)
T TIGR00887       369 LMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF  448 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            88877777666555542211  1111111111111222233456778889999999999999999999999999999888


Q ss_pred             Hhhcc------------cchhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 040646          452 AAGRQ------------NNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDT  490 (509)
Q Consensus       452 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (509)
                      +....            +....+.+++++.+++.++.+++||+++++++|.
T Consensus       449 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei  499 (502)
T TIGR00887       449 LYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEEL  499 (502)
T ss_pred             hhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhh
Confidence            73221            1234567777777766666677799998876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-39  Score=311.57  Aligned_cols=388  Identities=21%  Similarity=0.279  Sum_probs=291.4

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHhhccchhhhhhe
Q 040646          107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS---TNMWIYSVLRFINGFGRATIGTCAI  183 (509)
Q Consensus       107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~  183 (509)
                      ...+.+++++.+|.++|+++.|.++|| +|||..+.++.++..++.+++.++   +++.+++++|++.|+..|......+
T Consensus        60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   60 LLWSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            467889999999999999999999999 999999999998888888877664   6799999999999999999999999


Q ss_pred             eeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH---HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHh-cCC
Q 040646          184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA---YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFI-QGR  259 (509)
Q Consensus       184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~-~~~  259 (509)
                      .|+.|..|++.||....+.+.+..+|.+++..++   .+.+...|++.+.+..+++++.. +...++||||+|+.. +++
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PESPk~Ll~~k~~  217 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPESPKYLLIKKGD  217 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHcCC
Confidence            9999999999999999999999999999998875   34466679999999999998864 667899999999998 799


Q ss_pred             HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH-----hHhhhccccc
Q 040646          260 KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI-----GMVYYGMPLG  334 (509)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  334 (509)
                      .++|++.+++.++.+++++..++..+ +.++++..+++..+++++++++..++...+.+...+++     +...++...+
T Consensus       218 ~~~A~~sl~~y~G~~~~~~~~e~~~~-e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i  296 (485)
T KOG0569|consen  218 EEEARKALKFYRGKEDVEAEIEEMLR-EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI  296 (485)
T ss_pred             HHHHHHHHHHHhCCCcchhHHHHHHH-HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence            99999999999874432222211111 11112222235567999999998888766666555533     3344555566


Q ss_pred             cccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---cch-hHHH---HHHHHH
Q 040646          335 LGSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG---KIW-TSVE---IGLELV  404 (509)
Q Consensus       335 ~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~---~~~~~~  404 (509)
                      +++.|++..   .+....++..++.++++.++.||+|||++++.+..++.++.+++....   ... .+..   ++..++
T Consensus       297 ~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~  376 (485)
T KOG0569|consen  297 FKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFL  376 (485)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            677777644   456667788999999999999999999999999888888777665521   111 1111   111122


Q ss_pred             HHHHH-HHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh-hcccchhHHHHHHHHHHHHHHH-HhhccC
Q 040646          405 AFFSA-CTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA-GRQNNFLSYGIFGLVIGLCGLF-VIGLPE  481 (509)
Q Consensus       405 ~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  481 (509)
                      ..+.. .+..|+.+-+.+|++|++.|+.++++......+..++-.+..-. ........++++.+.+++..+. +..+||
T Consensus       377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPE  456 (485)
T KOG0569|consen  377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPE  456 (485)
T ss_pred             HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcc
Confidence            22222 23347889999999999999999999999888887765555441 1111124455555555544444 578899


Q ss_pred             CCCCCCcccHHHHHHh
Q 040646          482 TRDTQLSDTMDEEEYK  497 (509)
Q Consensus       482 ~~~~~~~~~~~~~~~~  497 (509)
                      ||+|+..|..++.+++
T Consensus       457 Tkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  457 TKGRTPYEIIEELEKR  472 (485)
T ss_pred             cCCCCHHHHHHHHHhC
Confidence            9999998887777655

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-37  Score=282.28  Aligned_cols=403  Identities=16%  Similarity=0.167  Sum_probs=296.3

Q ss_pred             CChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCccee
Q 040646           17 PSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSII   96 (509)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~   96 (509)
                      .+.+|+.+.    +.|+|+++++...+++...++.+-+.++.                                 .|.+.
T Consensus        14 ~p~~~~~~~----y~~~r~qif~~~fiGYa~fYl~RknF~~a---------------------------------~p~l~   56 (448)
T COG2271          14 LPASEIDKT----YKRWRIQIFLSIFIGYAAFYLTRKNFNLA---------------------------------MPALI   56 (448)
T ss_pred             CChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhhc---------------------------------cHHHH
Confidence            344454433    67899999999999999999999888885                                 89999


Q ss_pred             eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 040646           97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA  176 (509)
Q Consensus        97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g  176 (509)
                      +|.++   |..|.|++.+.++++|.++-++.|.++|| .++|+.+.+++++.++.+++++++++.+.+.+..+++|+.+|
T Consensus        57 e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg  132 (448)
T COG2271          57 EDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQG  132 (448)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence            99999   55699999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             hhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH---HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHH
Q 040646          177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI---AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRW  253 (509)
Q Consensus       177 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~  253 (509)
                      ..+|.+...+..|++++|||+..++++.+.++|..+.|++   +++..+.+||..|++.++++++++++.++..+|+|+.
T Consensus       133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs  212 (448)
T COG2271         133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS  212 (448)
T ss_pred             CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            9999999999999999999999999999999998777665   4667777999999999999999999999999999852


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccch-hHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccc
Q 040646          254 LFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLY-SAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMP  332 (509)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (509)
                      .-.. ..+|-          .++     +.+..+++++.+.-..+ .-.+.+++||..|...+...+.+..=.......|
T Consensus       213 ~GLP-~ie~~----------~~d-----~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p  276 (448)
T COG2271         213 EGLP-PIEEY----------RGD-----PLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGP  276 (448)
T ss_pred             cCCC-CHHHh----------hcC-----chhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            1100 11110          000     00000000000001111 1245577888877666666666665444444445


Q ss_pred             ccc-ccCCchH---HHHHHHHHhhhhhHHHHHHHHhhhc--CchhHHHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646          333 LGL-GSLSFNL---YLSVTFNALSELPASLITFFLIGKL--KRKSSLLG-FTIMSGVCSVLCVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       333 ~~~-~~~g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (509)
                      .++ +..+++.   .....+.-.++++|++++||++||+  |||....+ .++...++.+.+...+..+......+..+.
T Consensus       277 ~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~i  356 (448)
T COG2271         277 LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII  356 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence            544 4566664   3445566689999999999999996  66766544 444444444444444444444444444444


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ++...+...+.-..+.|..|++..|++.|+...++++ |...+....+..  ..+....|.++.+.++++.++.
T Consensus       357 Gf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         357 GFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            4444455566778899999999999999999999988 777777776632  2344445555555555555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4.6e-36  Score=300.87  Aligned_cols=391  Identities=17%  Similarity=0.156  Sum_probs=259.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccc-ccch--
Q 040646           35 LVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSL-IKGL--  111 (509)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--  111 (509)
                      +.++++..++.+++++|.....+.                                 .|.+.++|+.+.++.. ..+.  
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~---------------------------------~~~i~~~~~~~~~~~~~~~~~~~   61 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFV---------------------------------AYALGKVFFPGADPSVQMIAALA   61 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHhhCCCCCcHHHHHHHHH
Confidence            456677889999999999988886                                 7888888875433211 1122  


Q ss_pred             hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHhhccchhhhhhe
Q 040646          112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWI--------YSVLRFINGFGRATIGTCAI  183 (509)
Q Consensus       112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~  183 (509)
                      +.++.++++.++++++|+++|| +|||+++.+++++++++++++++++|++.        +++.|+++|++.|+.++...
T Consensus        62 ~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~  140 (490)
T PRK10642         62 TFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGAS  140 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHH
Confidence            2577889999999999999999 99999999999999999999999999874        89999999999999999999


Q ss_pred             eeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-H--------hcCCcchHHHHHHHhhHHHHHHHhheeecCchHHH
Q 040646          184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-I--------NRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWL  254 (509)
Q Consensus       184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~  254 (509)
                      +++.|++|+++||++.++...+..+|.++++.+.. +        ..++|||+.|++.+++.++ .++.+..+||+|+|.
T Consensus       141 ~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~  219 (490)
T PRK10642        141 IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQ  219 (490)
T ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHH
Confidence            99999999999999999999888888888876532 2        1368999999997766664 445567889999875


Q ss_pred             HhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH----HHHHHhHhhhc
Q 040646          255 FIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV----TGFGIGMVYYG  330 (509)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~  330 (509)
                      ..+++.++.          ..  +   ..          ++++..++++++++..  +.......    ..+........
T Consensus       220 ~~~~~~~~~----------~~--~---~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  272 (490)
T PRK10642        220 QHVDKLEQG----------DR--E---GL----------QDGPKVSFKEIATKHW--RSLLTCIGLVIATNVTYYMLLTY  272 (490)
T ss_pred             HHHHhhhhh----------cc--c---cc----------cccccCCHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            322211110          00  0   00          0001123556665421  22221111    11222223334


Q ss_pred             ccccc-ccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHH-HHHhccchhHHHHHHHHHH
Q 040646          331 MPLGL-GSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVL-CVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       331 ~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  405 (509)
                      .|.++ +..|.+....   .....++.+++.++.|+++||+|||+.+..+.++..+..+. +...............++.
T Consensus       273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (490)
T PRK10642        273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML  352 (490)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            45555 4456654332   23344667788889999999999999887776544333222 2222222222222222333


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGLFVIGLPET  482 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (509)
                      ++..+...+....+.+|.+|++.|+++.|+.+....+++.++|.+.+...   .....++....+..+++.+..+++||+
T Consensus       353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes  432 (490)
T PRK10642        353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKET  432 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            33334445566777889999999999999876667777778888877321   122333344444455555555667887


Q ss_pred             CCCCC
Q 040646          483 RDTQL  487 (509)
Q Consensus       483 ~~~~~  487 (509)
                      +++..
T Consensus       433 ~~~~~  437 (490)
T PRK10642        433 ANRPL  437 (490)
T ss_pred             cCCCC
Confidence            65443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=9.4e-37  Score=306.78  Aligned_cols=420  Identities=18%  Similarity=0.251  Sum_probs=277.3

Q ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646           31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG  110 (509)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  110 (509)
                      .+++++.+++++++.+.+++|...++.....                         +.....+....++++   ++.+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~---~~~~~~   58 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVES-------------------------LNTVFVAPQNLSESA---ANSLLG   58 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHH-------------------------HHHHhcccccccccC---ChhHHH
Confidence            4688888899999999999988766664000                         000012233334476   455889


Q ss_pred             hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHhhccchh
Q 040646          111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS------------TNMWIYSVLRFINGFGRATI  178 (509)
Q Consensus       111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~  178 (509)
                      ++.+++.++..++++++|+++|| +|||++++++.++++++.++++++            ++++.+++.|+++|++.|..
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~  137 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA  137 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHH
Confidence            99999999999999999999999 999999999999999998888763            23678889999999999999


Q ss_pred             hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      .+...++++|++|+++|++++++.+.+..+|.++++.++...         .+.+||+.|++.+++.++.. +..+++||
T Consensus       138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~  216 (479)
T PRK10077        138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPE  216 (479)
T ss_pred             hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCC
Confidence            999999999999999999999999999999999988775422         35789999999888877754 44677999


Q ss_pred             chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH-HHHHH----HH
Q 040646          250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI-MVTGF----GI  324 (509)
Q Consensus       250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~----~~  324 (509)
                      +|+++..+++.+++.+..++.....+   .....++.....+.++    ...+..+...  ....... ....+    +.
T Consensus       217 s~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  287 (479)
T PRK10077        217 TPRYLMSRGKQEQAEGILRKIMGNTL---ATQALQEIKHSLDHGR----KTGGKLLMFG--VGVIVIGVMLSVFQQFVGI  287 (479)
T ss_pred             CcHHHHHcCCHHHHHHHHHHHcCChh---HHHHHHHHHHHHHHhh----hhhhhhcchh--HHHHHHHHHHHHHHHHhCh
Confidence            99998777777766555554432110   0000000000000000    0000011000  0011111 11111    11


Q ss_pred             hHhhhccccccccCCchH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc-chh-HHHH
Q 040646          325 GMVYYGMPLGLGSLSFNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK-IWT-SVEI  399 (509)
Q Consensus       325 ~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~  399 (509)
                      ....+..|.+.++.|.+.   .......++..+++.+++++++||+|||+.+..+.++.+++.+++..... +.. ....
T Consensus       288 ~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~  367 (479)
T PRK10077        288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL  367 (479)
T ss_pred             hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence            222344466556666542   33444566778899999999999999999999888888887766654321 111 1111


Q ss_pred             HHHHHHHHHHHH-HhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--------cccchhHHHHHHHHHH
Q 040646          400 GLELVAFFSACT-AFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--------RQNNFLSYGIFGLVIG  470 (509)
Q Consensus       400 ~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--------~~~~~~~~~~~~~~~~  470 (509)
                      ...++..++... ..+..+.++.|.+|++.|+++.|+.+....+|.++++.+....        ..+....+.+.+++.+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  447 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence            111122122222 2256788999999999999999999999988888876555421        2233345555565555


Q ss_pred             HHHHHH-hhccCCCCCCCcc
Q 040646          471 LCGLFV-IGLPETRDTQLSD  489 (509)
Q Consensus       471 ~~~~~~-~~~~~~~~~~~~~  489 (509)
                      +++++. ++.||+|+++.+|
T Consensus       448 ~~~~~~~~~~~e~~~~~~~~  467 (479)
T PRK10077        448 LAALFMWKFVPETKGKTLEE  467 (479)
T ss_pred             HHHHHHHhccccCCCCCHHH
Confidence            555544 4567887776544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2.1e-35  Score=294.65  Aligned_cols=397  Identities=14%  Similarity=0.100  Sum_probs=269.3

Q ss_pred             CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646           30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK  109 (509)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (509)
                      +.|.++.++.++++++++.+.|+...+..                                 .|.+++|||+   +..+.
T Consensus        23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~---------------------------------~~~i~~~~~~---s~~~~   66 (467)
T PRK09556         23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAA---------------------------------QNDMISTYGL---STTEL   66 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhh---------------------------------hHHHHHhcCC---CHHHH
Confidence            56778888899999999999898777664                                 8999999999   55589


Q ss_pred             chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHhhccchhhhhhee
Q 040646          110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-----STNMWIYSVLRFINGFGRATIGTCAIV  184 (509)
Q Consensus       110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~  184 (509)
                      |++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.++.++     ++|++.+++.|+++|++.+...+...+
T Consensus        67 g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  145 (467)
T PRK09556         67 GMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYS  145 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHH
Confidence            999999999999999999999999 99999999998888888777665     589999999999999999999999999


Q ss_pred             eeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC---CcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCH
Q 040646          185 LSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG---SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK  260 (509)
Q Consensus       185 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~---~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~  260 (509)
                      ++.||+|+++||++++++..+.++|.+++++++ ++...   .+||..|.+.+++.++.+++.+++.+|+|+..   +..
T Consensus       146 ~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~  222 (467)
T PRK09556        146 TITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWG  222 (467)
T ss_pred             HHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCC
Confidence            999999999999999999999999999998884 44332   26999999888888877666666777776421   110


Q ss_pred             HHHHHHHHHHHhhcCCccccccccCcccccccccccchhH-HHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-ccC
Q 040646          261 EEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GSL  338 (509)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  338 (509)
                      ++ ++.   .    ++ ....+    +.+.+.++...... .+..++++.++...+..++.........+..|.++ +..
T Consensus       223 ~~-~~~---~----~~-~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~  289 (467)
T PRK09556        223 KA-EEI---F----GE-PISEE----DKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQEL  289 (467)
T ss_pred             Ch-hhc---c----cC-ccchh----hhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            00 000   0    00 00000    00000000000111 22367777766555554444444333444456555 557


Q ss_pred             CchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHH
Q 040646          339 SFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSL  415 (509)
Q Consensus       339 g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (509)
                      |.+.....   ....++.+++.+++|+++||++||+.+.....+..+...++......+........++.++........
T Consensus       290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  369 (467)
T PRK09556        290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL  369 (467)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence            77765443   334477889999999999999998876654443333322222222222222222222222222222222


Q ss_pred             HHhhcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHhhc--------------ccchhHHHHHHHHHHHHHHHHhhc
Q 040646          416 LLIYTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAAGR--------------QNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       416 ~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ......|.+|++.++++.|+.+..+.+ |.+++|.+.+...              .++...+.+++++.+++.+..+++
T Consensus       370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            335667999999999999999999986 7689998888322              234455666666666655554433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=6.3e-35  Score=286.04  Aligned_cols=374  Identities=13%  Similarity=0.140  Sum_probs=260.6

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646           32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL  111 (509)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  111 (509)
                      |.+|++++++++++++++.|..+.++.                                 .|.+++|+|+   +..+.|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~l~~~~~~---s~~~~g~   47 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFA---------------------------------GLTMGKDLGL---SATMFGL   47 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHH---------------------------------HHhhHhhcCC---CHHHHHH
Confidence            567888899999999999999999886                                 7899999999   4558999


Q ss_pred             hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646          112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG  191 (509)
Q Consensus       112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~  191 (509)
                      +.+++.+++.+++++.|+++|| +|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|
T Consensus        48 ~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~  126 (412)
T TIGR02332        48 AATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP  126 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhhhhHHHHHHHHHHHHHHH-HHhc------CCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcC-CHHHH
Q 040646          192 KKRRGQVGSIGFFCFTLGFLSLPAIA-YINR------GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQG-RKEEA  263 (509)
Q Consensus       192 ~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~-~~~~~  263 (509)
                      +++|++++++++.+.++|.+++++++ ++..      ..|||+.|++.+++.++..++.++++||+|+..  +. ..++.
T Consensus       127 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~  204 (412)
T TIGR02332       127 AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDK  204 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHH
Confidence            99999999999999999999999984 4442      369999999999888877767778889998420  00 11111


Q ss_pred             HHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC--Cch
Q 040646          264 VSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL--SFN  341 (509)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~  341 (509)
                      +...+....  +..+.+++.+..    +.++......+++++ ++.++......++............|.++++.  +.+
T Consensus       205 ~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s  277 (412)
T TIGR02332       205 KALKEMIDN--DQLTLEQPEGAF----AHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSS  277 (412)
T ss_pred             HHHHHHHHh--cccccccccccc----ccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            111111111  100000000000    000111122344444 34444333333333333444445566667654  444


Q ss_pred             HHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHH
Q 040646          342 LYL---SVTFNALSELPASLITFFLIGKLKRKSSL-LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLL  417 (509)
Q Consensus       342 ~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (509)
                      ...   ......++.+++.++.++++||+++|+.. .....+..+.. ++...... ............++.....+..+
T Consensus       278 ~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~  355 (412)
T TIGR02332       278 NIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASATDH-NLIQLLGIIMASMGSFSAMAIFW  355 (412)
T ss_pred             HHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhcCC-HHHHHHHHHHHHHHhhhhhhHHH
Confidence            333   34455578889999999999999977753 33333333332 22222222 22211111122222222234445


Q ss_pred             hhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          418 IYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       418 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      ....|.+|++.|+++.|+.+....+|++++|.+.+.
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~  391 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI  391 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            666788999999999999999999999999999883

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.7e-35  Score=283.99  Aligned_cols=354  Identities=13%  Similarity=0.014  Sum_probs=250.2

Q ss_pred             ceecCCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040646           85 WSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIY  164 (509)
Q Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l  164 (509)
                      |....|.+|.+++|||+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+......+.+....++|++.+
T Consensus         7 ~~~~~~~lp~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             HHHHHhhHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44445569999999999   44589999999999999999999999999 999998766655554443333334799999


Q ss_pred             HHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646          165 SVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV  243 (509)
Q Consensus       165 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~  243 (509)
                      ++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++ +.+.++.|||+.|++.++++++..++.
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~  161 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV  161 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            9999999999986 45555666999999999999999999999999999998 466778899999999888888777777


Q ss_pred             heeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHH
Q 040646          244 RFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFG  323 (509)
Q Consensus       244 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  323 (509)
                      ++++||+|++.   ++..+.                               ++...++++++++|..+...+..++....
T Consensus       162 ~~~lp~~p~~~---~~~~~~-------------------------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  207 (368)
T TIGR00903       162 LAALPALPFQA---AEGFGF-------------------------------KDAVKEFGALAGRKDLWIIGAILGFGVAL  207 (368)
T ss_pred             HHHcCCCCCCC---CCCcch-------------------------------HHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            78899987531   000000                               00012467888888876666665555555


Q ss_pred             HhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCch---hHHH-HHHHHHHHHHHHHHHhccchhHHHH
Q 040646          324 IGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRK---SSLL-GFTIMSGVCSVLCVVMGKIWTSVEI  399 (509)
Q Consensus       324 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  399 (509)
                      ......++|.++++.+.+.. ......+..+.+.+..++++||..||   +... ....+.++....+....  ......
T Consensus       208 ~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~--~~~~~~  284 (368)
T TIGR00903       208 FDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL--NRLALF  284 (368)
T ss_pred             HHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc--ccHHHH
Confidence            55555566777777777643 44444455556666678888887654   2222 23333333333333221  222223


Q ss_pred             HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhc
Q 040646          400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ....+..++....++..+++.+|.+|++.|+++.|+.+..+++|+.++|.+.+....+....+.++++..+++++....+
T Consensus       285 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~  364 (368)
T TIGR00903       285 AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLL  364 (368)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence            33333444455566778889999999999999999999999999999998887333344556666777666666655433


Q ss_pred             c
Q 040646          480 P  480 (509)
Q Consensus       480 ~  480 (509)
                      +
T Consensus       365 ~  365 (368)
T TIGR00903       365 P  365 (368)
T ss_pred             C
Confidence            3

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.6e-34  Score=285.53  Aligned_cols=376  Identities=15%  Similarity=0.118  Sum_probs=246.9

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646           32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL  111 (509)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  111 (509)
                      +.+++.+...+++++++++|....++.                                 .|.+.+||+.+..+..+.+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~l~~~~~~~~~~~~~~~~   64 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFC---------------------------------SLYFAHIFFPSGNTTTQLLQ   64 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCCCCchHHHHH
Confidence            455667778888999999999998886                                 78888888632212223333


Q ss_pred             ---hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhccchhhh
Q 040646          112 ---PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGRATIGT  180 (509)
Q Consensus       112 ---~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~  180 (509)
                         +.+..+++..++++++|+++|| +|||+++..+.++++++++++++++++.        .+++.|+++|++.|..++
T Consensus        65 ~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~  143 (432)
T PRK10406         65 TAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG  143 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence               4444555556999999999999 9999999999999999999999988764        689999999999999999


Q ss_pred             hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      ...+++.|++|+++|+++.++...+...|.++++++...+         ..+|||++|++.+++.++. +..+..+||+|
T Consensus       144 ~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~  222 (432)
T PRK10406        144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS  222 (432)
T ss_pred             hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            9999999999999999999999888888888877664322         2579999999988877764 34556678876


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH-HHHHhHhhhc
Q 040646          252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT-GFGIGMVYYG  330 (509)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~  330 (509)
                      ++..      +.          .+                     +..+++++++++..+...+...+. ..........
T Consensus       223 ~~~~------~~----------~~---------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (432)
T PRK10406        223 QQET------RA----------LK---------------------EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTY  265 (432)
T ss_pred             hHHH------hh----------hc---------------------ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4210      00          00                     011366777776544333322221 2222222233


Q ss_pred             ccccc-ccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH-h-ccchhHHHHHHHHH
Q 040646          331 MPLGL-GSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV-M-GKIWTSVEIGLELV  404 (509)
Q Consensus       331 ~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  404 (509)
                      .|.++ +..|.+.....   .+..+...++.++.|+++||++||+.+.....+.++....+.. . ..........+..+
T Consensus       266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (432)
T PRK10406        266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC  345 (432)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            44444 44676654433   3334556677788899999999999877665544333322221 1 11122222222222


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHhhc-cc-chhHHHHHHHHHHHHHHHHhhc
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAAGR-QN-NFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ..+..+...+..+.+.+|.+|++.|+++.|+.+..+++ .+...|.+.+... .+ ....+...++..+++.+..+++
T Consensus       346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            22333333455678889999999999999999887654 2334666655221 12 2233444444444444444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.3e-34  Score=266.10  Aligned_cols=369  Identities=17%  Similarity=0.170  Sum_probs=284.7

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646           32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL  111 (509)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  111 (509)
                      +..+..++.+.++.|..+..-+.+.-+                                 +|++.+||++   +..+.|+
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gL---------------------------------Lp~iA~dl~v---s~~~aG~   52 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGL---------------------------------LPPIAADLGV---SEGAAGQ   52 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhc---------------------------------hHHHHHHcCC---CHHHHHH
Confidence            445666677888888888877777775                                 9999999999   4458999


Q ss_pred             hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646          112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG  191 (509)
Q Consensus       112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~  191 (509)
                      +.|.|.+++.+++|+...+.|| +.||++++..+.++.++++++++++||+.++++|++.|++.|..++...++..+..|
T Consensus        53 lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp  131 (394)
T COG2814          53 LITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVP  131 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHH
Q 040646          192 KKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI  270 (509)
Q Consensus       192 ~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~  270 (509)
                      +++|++++++...+.+++.++|.++| ++.+.+|||..|++.+.++++..+..+..+|  |+     ++.+         
T Consensus       132 p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~-----~~~~---------  195 (394)
T COG2814         132 PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PS-----EISG---------  195 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Cc-----cCCC---------
Confidence            99999999999999999999999995 7778899999999999999998888888888  21     0000         


Q ss_pred             HhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcc-ccccccCCchH---HHHH
Q 040646          271 STSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGM-PLGLGSLSFNL---YLSV  346 (509)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~---~~~~  346 (509)
                                            +.+....+..+++++|..+..+...++...+....|.++ |++.+..|++.   ....
T Consensus       196 ----------------------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~L  253 (394)
T COG2814         196 ----------------------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL  253 (394)
T ss_pred             ----------------------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHH
Confidence                                  000111235668889988887777777777666655554 66666677664   3455


Q ss_pred             HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch
Q 040646          347 TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT  426 (509)
Q Consensus       347 ~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  426 (509)
                      ...+++.++|++++|++.|| +.|+.+.....+.++..+.+.+...+. +......++.++..............+ .-+
T Consensus       254 l~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~-~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p  330 (394)
T COG2814         254 LAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP-ALALALLFLWGFAFSPALQGLQTRLAR-LAP  330 (394)
T ss_pred             HHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCC
Confidence            67789999999999999999 888888888777777777776655443 333333333444444444444555555 334


Q ss_pred             hhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHhh
Q 040646          427 CVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVIG  478 (509)
Q Consensus       427 ~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      +.++.+.+++....++|..+|..+.+.  ...+........+.+.+++.++.++
T Consensus       331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence            678899999888888888877777772  2234444445555555555544443

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=3.2e-34  Score=283.92  Aligned_cols=363  Identities=18%  Similarity=0.204  Sum_probs=261.8

Q ss_pred             CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccc
Q 040646           29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI  108 (509)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (509)
                      +-+++|+..+..+.++++.++++.....+.                                 .|.+++|+|++   +.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~i~~~~~~s---~~~   54 (426)
T PRK12307         11 EITRPQKNALFSAWLGYVFDGFDFMLIFYI---------------------------------MYLIKADLGLT---DME   54 (426)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------------------------HHHHHHHhCCC---HHH
Confidence            456899998899999999999999888775                                 88999999994   458


Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      .+++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+....++.|
T Consensus        55 ~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~  133 (426)
T PRK12307         55 GAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE  133 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHH
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSII  267 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~  267 (509)
                      ++|+++|+++.++...+..+|.++++.+ +.+.+..+||+.|++..+..++ .+......||++++...+.         
T Consensus       134 ~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~---------  203 (426)
T PRK12307        134 SWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKL---------  203 (426)
T ss_pred             hCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhh---------
Confidence            9999999999999999999999999887 5677778999999886544433 2233333455543211000         


Q ss_pred             HHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH---hHhhhccccccccCCchHHH
Q 040646          268 KSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI---GMVYYGMPLGLGSLSFNLYL  344 (509)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~  344 (509)
                         .. ++  +          +.+...+....+++++++++.++.........+...   .......|.++++.|.+...
T Consensus       204 ---~~-~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  267 (426)
T PRK12307        204 ---SG-KG--K----------HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGV  267 (426)
T ss_pred             ---hc-cc--c----------ccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence               00 00  0          000000111234677888776554333222221111   11233456666666776544


Q ss_pred             H---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HHHHHHhHHHHhhc
Q 040646          345 S---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF-FSACTAFSLLLIYT  420 (509)
Q Consensus       345 ~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  420 (509)
                      .   .....++.+++.++.+++.||++||+.+..+.++..+..+.+......... .......+. +......+....++
T Consensus       268 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  346 (426)
T PRK12307        268 VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYL-LLGACLFGLMATNVGVGGLVPKFL  346 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHHHHHhcccHhHHHHHHH
Confidence            3   344457788999999999999999999888777666555444433322221 111111111 11112234556778


Q ss_pred             ccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc
Q 040646          421 LELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR  455 (509)
Q Consensus       421 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~  455 (509)
                      .|.+|++.|++++|+.+....+|+.++|.+.+...
T Consensus       347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999988433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=5.2e-34  Score=280.61  Aligned_cols=351  Identities=18%  Similarity=0.172  Sum_probs=262.6

Q ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646           31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG  110 (509)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  110 (509)
                      .|++|.++.++.+..+.+++|.......                                 .|.+.+|+|+   ++.+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~---s~~~~g   53 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVA---------------------------------APRMAQEFGL---DVAQMG   53 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCC---CHHHHH
Confidence            4788999999999999999998777775                                 7899999999   445899


Q ss_pred             hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646          111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV  190 (509)
Q Consensus       111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~  190 (509)
                      ++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++
T Consensus        54 ~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  132 (406)
T PRK11551         54 WAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV  132 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHH
Q 040646          191 GKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKS  269 (509)
Q Consensus       191 ~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~  269 (509)
                      |+++|++++++.+.+..+|..+++.++ .+....+||+.|++.++..++..+....++||+|++...+++.++.++    
T Consensus       133 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----  208 (406)
T PRK11551        133 GPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP----  208 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh----
Confidence            999999999999999999999999985 566778999999998877666555566678998764322111000000    


Q ss_pred             HHhhcCCccccccccCcccccccccccchhHHHHHHhchH---HHHHHHHHHHHHHHHhHhhhccccccccCCchHHH--
Q 040646          270 ISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW---ALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL--  344 (509)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--  344 (509)
                                                    ..+..++++.   .+......+.............|.+.++.|.+...  
T Consensus       209 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~  258 (406)
T PRK11551        209 ------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAG  258 (406)
T ss_pred             ------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhh
Confidence                                          0111111111   11111111111122222333356666666766443  


Q ss_pred             -HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646          345 -SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL  423 (509)
Q Consensus       345 -~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (509)
                       ......++.+++.++.|++.||+|||+.+..+.+...++...+....  .........++.++......+...++..|.
T Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  336 (406)
T PRK11551        259 LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLLAGFAAGLFVVGGQSVLYALAPLF  336 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             33445577889999999999999999988876666555555444432  222222333333444445567778899999


Q ss_pred             cchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646          424 FPTCVRNSAISMVRQALVFGGVFSPVLVAAG  454 (509)
Q Consensus       424 ~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~  454 (509)
                      +|++.|+++.|+.+....+|..++|.+.+..
T Consensus       337 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  367 (406)
T PRK11551        337 YPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL  367 (406)
T ss_pred             cchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence            9999999999999999999999999999843

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=6.4e-34  Score=281.31  Aligned_cols=392  Identities=13%  Similarity=0.087  Sum_probs=262.8

Q ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646           31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG  110 (509)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  110 (509)
                      +++++.++..+.++++....+.......                                 .|.+.+++|+   +..+.|
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~g~---s~~~~g   61 (434)
T PRK11663         18 RYWRRHILITMYLGYALFYFTRKSFNAA---------------------------------MPEMLADLGL---SRSDIG   61 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHh---------------------------------hHHHHHhcCC---CHHHHH
Confidence            4567777777778888777777666554                                 7899999999   445899


Q ss_pred             hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646          111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV  190 (509)
Q Consensus       111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~  190 (509)
                      ++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++
T Consensus        62 ~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~  140 (434)
T PRK11663         62 LLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY  140 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHH
Q 040646          191 GKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKS  269 (509)
Q Consensus       191 ~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~  269 (509)
                      |+++|++++++++.+.++|..+++.+ +.+.+..|||+.|++.+++.++..+...+++||+|++...+...++.      
T Consensus       141 ~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------  214 (434)
T PRK11663        141 SRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR------  214 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc------
Confidence            99999999999999999999999988 67777889999999988877765555556778877532100000000      


Q ss_pred             HHhhcCCccccccccCcccccccccccchhH-HH-HHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-ccCCchHHHH-
Q 040646          270 ISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IK-ILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLYLS-  345 (509)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~-  345 (509)
                           +  +.    ++...+.+. ++.+..+ ++ ..++++..+....................|.++ ++.|.+.... 
T Consensus       215 -----~--~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~  282 (434)
T PRK11663        215 -----H--DA----LELAQQQEG-AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTAN  282 (434)
T ss_pred             -----c--cc----cccchhccc-cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence                 0  00    000000000 0001111 11 245566555444433333333333333445555 5567765444 


Q ss_pred             --HHHHHhhhhhHHHHHHHHhhhc--CchhHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q 040646          346 --VTFNALSELPASLITFFLIGKL--KRKSSL-LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYT  420 (509)
Q Consensus       346 --~~~~~~~~~~~~~~~g~l~dr~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (509)
                        .....++.+++.++.|+++||+  ++|+.. ........+....+...+...........+..++.............
T Consensus       283 ~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  362 (434)
T PRK11663        283 SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAA  362 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence              3445578889999999999998  333332 22222222222222222222222221222222221111222334567


Q ss_pred             ccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646          421 LELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       421 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      .|.+|++.|+++.|+.+....+|..++|.+.+..  ..+....+.+.+++.+++++..+
T Consensus       363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988832  23445566666666655555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.7e-34  Score=290.49  Aligned_cols=385  Identities=21%  Similarity=0.278  Sum_probs=280.4

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLST  187 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  187 (509)
                      +.+++.+...++..++++++|+++|+ +|||+.++++.+++.++++++++++|+++++++|++.|+|.|......+.|++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            45999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646          188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGS--SWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS  265 (509)
Q Consensus       188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~  265 (509)
                      |..|++.||...+..+....+|..++..++....+.  +||..+.+..+++++..+. .+++||+|+|+.++++.+++++
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~  247 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKR  247 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHH
Confidence            999999999999999999999999997777776654  8999999999999997766 8999999999999999999999


Q ss_pred             HHHHHHhhcCCccccccccCccc--ccccccccchhHHHHHHhchHHHHHHHHHH-HHHH----HHhHhhhccccccccC
Q 040646          266 IIKSISTSENQRSLIMDFNNVSF--EQETWNVDLYSAIKILVEKKWALRRLSAIM-VTGF----GIGMVYYGMPLGLGSL  338 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~  338 (509)
                      .+.++.... +.+...+.++.+.  ..+....+....++++++ |..++.....+ +..+    +.+...|+.+.+++..
T Consensus       248 ~l~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~  325 (513)
T KOG0254|consen  248 SLKRLRGLS-PEDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA  325 (513)
T ss_pred             HHHHHhCCC-CcchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc
Confidence            999987622 1222222221111  001111111113445554 33334333332 2222    3344445556667766


Q ss_pred             Cch-H-HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHH
Q 040646          339 SFN-L-YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI----------WTSVEIGLELVAF  406 (509)
Q Consensus       339 g~~-~-~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  406 (509)
                      |.+ . .....+.++..+++.+++.++.||+|||++++.+...+.++.+++......          ..+..+....+..
T Consensus       326 g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  405 (513)
T KOG0254|consen  326 GLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFI  405 (513)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHH
Confidence            665 3 556677778889999999999999999999999999999888877653211          0111111111111


Q ss_pred             -HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH-hhccc-chhHHHHHHHHHHHHHH--HHhhccC
Q 040646          407 -FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA-AGRQN-NFLSYGIFGLVIGLCGL--FVIGLPE  481 (509)
Q Consensus       407 -~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~-~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~  481 (509)
                       ....+..++.+.+.+|.+|.+.|+.+.++....+.+.+.+-..... ..... ....+..++.++.+...  +.+++||
T Consensus       406 ~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pE  485 (513)
T KOG0254|consen  406 FSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPE  485 (513)
T ss_pred             HHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEccc
Confidence             2222334677889999999999999999999888777665433332 11111 23445555554444444  4578899


Q ss_pred             CCCCCCcccHHHHHH
Q 040646          482 TRDTQLSDTMDEEEY  496 (509)
Q Consensus       482 ~~~~~~~~~~~~~~~  496 (509)
                      +|+++++|.++...+
T Consensus       486 Tkg~sleei~~~~~~  500 (513)
T KOG0254|consen  486 TKGLTLEEINELFEE  500 (513)
T ss_pred             CCCCcHHHHHHHHHc
Confidence            999998876654443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=3.6e-34  Score=288.48  Aligned_cols=394  Identities=21%  Similarity=0.265  Sum_probs=261.2

Q ss_pred             Ccceeeeecccc-----ccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---HHHH
Q 040646           92 HTSIISEWDLEC-----ASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---NMWI  163 (509)
Q Consensus        92 ~~~i~~~~~~~~-----~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~  163 (509)
                      .|.+..+++.+.     .+..+.+++.+++.++..++++++|+++|| +|||++++++.++++++.+++.+.+   +++.
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (481)
T TIGR00879        51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFALSVEM  129 (481)
T ss_pred             hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            566666766641     125689999999999999999999999999 9999999999999999999986644   4668


Q ss_pred             HHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH---HH-hcCCcchHHHHHHHhhHHHH
Q 040646          164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA---YI-NRGSSWRRIYLYTSIPTILY  239 (509)
Q Consensus       164 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~---~~-~~~~~wr~~f~~~~~~~~~~  239 (509)
                      +++.|++.|++.+...+...+++.|++|+++|++++++++.+..+|.++++.++   .. ....+||+.|++.++..++.
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~  209 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL  209 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987   33 35679999999966666554


Q ss_pred             HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCcccccc-ccCcccccccccccchhHHHHHHhch--HHHHHHHH
Q 040646          240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMD-FNNVSFEQETWNVDLYSAIKILVEKK--WALRRLSA  316 (509)
Q Consensus       240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~  316 (509)
                       ++..+++||+|++...+++.++..+..++.....+++....+ .+......+.+.+.....++++++..  ..+..++.
T Consensus       210 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (481)
T TIGR00879       210 -FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLG  288 (481)
T ss_pred             -HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHH
Confidence             455677899998876666655544443333221110000000 00000000000000011123333221  11222332


Q ss_pred             HHHHHHH----HhHhhhccccccccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646          317 IMVTGFG----IGMVYYGMPLGLGSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV  389 (509)
Q Consensus       317 ~~~~~~~----~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~  389 (509)
                      .++.++.    .....+..|.+.++.|.+..   .......++.+++.++.+++.||++||+.+..+.++.+++.+++.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  368 (481)
T TIGR00879       289 VVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI  368 (481)
T ss_pred             HHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            2222222    22234445666666777653   3344455778889999999999999999988887777777666552


Q ss_pred             h---ccch-----hHHHHHHHHHHHHHHH-HHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccc
Q 040646          390 M---GKIW-----TSVEIGLELVAFFSAC-TAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNN  458 (509)
Q Consensus       390 ~---~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~  458 (509)
                      .   ....     .........+...+.+ ...+....+..|.+|++.|+++.++.+....+|++++|.+.+..  ..+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~  448 (481)
T TIGR00879       369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV  448 (481)
T ss_pred             HhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            1   1111     1111111122222222 22355667789999999999999999999999999999888732  2344


Q ss_pred             hhHHHHHHHHHHHHHHHH-hhccCCCCCCC
Q 040646          459 FLSYGIFGLVIGLCGLFV-IGLPETRDTQL  487 (509)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  487 (509)
                      ...+.+.++++++++++. ++.||+++++.
T Consensus       449 ~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  478 (481)
T TIGR00879       449 GGVFIFFGGLNVLGLIFVYFFLPETKGRTL  478 (481)
T ss_pred             cceehhHHHHHHHHHHHHheecccCCCCCh
Confidence            455666666666666554 45577665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=6.9e-33  Score=273.91  Aligned_cols=381  Identities=17%  Similarity=0.138  Sum_probs=252.4

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCc-ceeeee--ccccccccc
Q 040646           32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHT-SIISEW--DLECASSLI  108 (509)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~-~i~~~~--~~~~~~~~~  108 (509)
                      .++++.+....++.+++++|.....+.                                 .| .+.+++  +++..    
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~~~~~~~~~~~~~~----   60 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGIT---------------------------------AALVFNREFFPQVSPA----   60 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhcCCCCCcH----
Confidence            355667788888999999999888874                                 33 234444  44322    


Q ss_pred             cchhH-----HHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhcc
Q 040646          109 KGLPA-----SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGR  175 (509)
Q Consensus       109 ~~~~~-----s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~  175 (509)
                      .+++.     ++.+++..+++++.|+++|| +|||+++..+.++++++++++++++|++        .+++.|+++|++.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~  139 (438)
T PRK09952         61 MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAV  139 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34443     35567788999999999999 9999999999999999999999999987        5889999999999


Q ss_pred             chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHh--------cCCcchHHHHHHHhhHHHHHHHhhee
Q 040646          176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YIN--------RGSSWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      |..++....++.|++|+++|++..+....+..+|.+++..+. .+.        .++|||++|++.+++.++ .+.....
T Consensus       140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~  218 (438)
T PRK09952        140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNG  218 (438)
T ss_pred             cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHh
Confidence            999999999999999999999999999999999998887663 332        257999999998877655 3445566


Q ss_pred             ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH-HHHHHHHh
Q 040646          247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI-MVTGFGIG  325 (509)
Q Consensus       247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~  325 (509)
                      +||+|+|...+++.++.           +                    ++....+.+++++..+...... +...+...
T Consensus       219 ~~es~~~~~~~~~~~~~-----------~--------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  267 (438)
T PRK09952        219 MEESAEFEQQQHEQAAA-----------K--------------------KRIPVIEALLRHPGAFLKIIALRLCELLTMY  267 (438)
T ss_pred             CCCChhHHHHHhhcccc-----------c--------------------ccCCHHHHHHHchHHHHHHHHHHHHHHHHHH
Confidence            78887653221110000           0                    0000122344555433332221 11122222


Q ss_pred             Hhhhccccc-cccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh--ccchhHHHH
Q 040646          326 MVYYGMPLG-LGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM--GKIWTSVEI  399 (509)
Q Consensus       326 ~~~~~~~~~-~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  399 (509)
                      ......|.+ .+..|.+...   ...+.++..+++.++.|+++||+|||+.+..+.++..++...+...  ..+.....+
T Consensus       268 ~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T PRK09952        268 IVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVF  347 (438)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            222223333 3445655442   2334456677788899999999999998887766555443333221  112222222


Q ss_pred             HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHHhh-c---ccchhHHHHHHHHHHHHHH
Q 040646          400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVAAG-R---QNNFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~~~-~---~~~~~~~~~~~~~~~~~~~  474 (509)
                      ...++..++.+...+..+++..|.+|++.|+++.++.+... .+|+.++|.+.+.. .   .++...+...+++.+++.+
T Consensus       348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v  427 (438)
T PRK09952        348 FSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM  427 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            22233334445556677889999999999999999976665 58888999888732 1   1233445555555566655


Q ss_pred             HHhhccCC
Q 040646          475 FVIGLPET  482 (509)
Q Consensus       475 ~~~~~~~~  482 (509)
                      ..+.++++
T Consensus       428 ~~~~~~~~  435 (438)
T PRK09952        428 TALLMKDN  435 (438)
T ss_pred             HHHHcccc
Confidence            55555553

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=5.5e-33  Score=271.41  Aligned_cols=341  Identities=13%  Similarity=0.049  Sum_probs=244.3

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+.+|+|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++++++++++|++.+++.|+++
T Consensus        32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~  107 (390)
T PRK03545         32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGI  107 (390)
T ss_pred             hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            7899999999   45589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|++|+++|+++++++..+.++|.+++|+++ .+.+..|||+.|++.++++++..+.....+||.
T Consensus       108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999998999999999999999999999999999999999999984 666778999999999988877655555556664


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH-hhh
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM-VYY  329 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~  329 (509)
                      |+     ++.+                                   ...+.++.+++|.++......++....... ..+
T Consensus       188 ~~-----~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (390)
T PRK03545        188 PS-----EHSG-----------------------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSY  227 (390)
T ss_pred             CC-----CCcc-----------------------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            32     0000                                   011345677787765544443333332222 223


Q ss_pred             ccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      ..++..+..|.+....   ....+++.+++.++.+++.||++||.... +..+..++...+..... +.+......++.+
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~g  305 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAAN-SEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhc-hHHHHHHHHHHHH
Confidence            3344444456654433   34455788999999999999999876544 33333333333322222 2222222333333


Q ss_pred             HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHhhc
Q 040646          407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ++.....+.......+..| +.|++++|+.+....+|..++|.+.+.  ...+....+.+.+++.+++.+.....
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333445566667766 578999999999999999999999883  33444556666666666655554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=6.8e-33  Score=275.47  Aligned_cols=410  Identities=13%  Similarity=0.078  Sum_probs=261.6

Q ss_pred             cccCCCChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCC
Q 040646           12 DLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQA   91 (509)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~   91 (509)
                      +|+..++.+|+.+.    +.|++|.++..+++.......+.....+.                                 
T Consensus         9 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------   51 (452)
T PRK11273          9 PHKARLPAAEIDPT----YRRLRWQIFLGIFFGYAAYYLVRKNFALA---------------------------------   51 (452)
T ss_pred             cCcccCChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------
Confidence            34555565555433    33566766666666666666666555553                                 


Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST----NMWIYSVL  167 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~  167 (509)
                      .|.+.++ |+   +..+.+++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.+++++++    +++.+++.
T Consensus        52 ~p~l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  126 (452)
T PRK11273         52 MPYLVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  126 (452)
T ss_pred             hHHHHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence            6778877 88   45589999999999999999999999999 9999999999999999999888764    78889999


Q ss_pred             HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHH-HHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646          168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGF-LSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRF  245 (509)
Q Consensus       168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~  245 (509)
                      |++.|++.+...+.....+.|++|+++|++++++++.+..+|. +.+++++ ......+||+.|++.+++.++..++..+
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888888999999999999999999999886 4556553 3333458999999998888776667777


Q ss_pred             eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhH-HHHHHhchHHHHHHHHHHHHHHHH
Q 040646          246 LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IKILVEKKWALRRLSAIMVTGFGI  324 (509)
Q Consensus       246 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~  324 (509)
                      ++||+|+....+ +.++.+       . +.    +.+.+   .+ +.++.+.... .+.+++++.++...+..++.....
T Consensus       207 ~~~~~~~~~~~~-~~~~~~-------~-~~----~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  269 (452)
T PRK11273        207 MMRDTPQSCGLP-PIEEYK-------N-DY----PDDYN---EK-HEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR  269 (452)
T ss_pred             HccCCHhhcCCC-Chhhhh-------h-cc----ccccc---cc-cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            889887531100 111100       0 00    00000   00 0000001111 123566777665555555555444


Q ss_pred             hHhhhcccccccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhc--CchhHH-HHHHHHHHHHHHHHHHhccchhHH
Q 040646          325 GMVYYGMPLGLGS-LSFNLYLS---VTFNALSELPASLITFFLIGKL--KRKSSL-LGFTIMSGVCSVLCVVMGKIWTSV  397 (509)
Q Consensus       325 ~~~~~~~~~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  397 (509)
                      .......|.++++ .+.+....   ..+..++.+++.++.|+++||+  +||... .....+..++...+..........
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  349 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV  349 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence            4444555666654 56654443   3344577788999999999999  455432 222222233332222222222222


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH-HHHHHHh--hcccchhHHHHHHHHHHHHHH
Q 040646          398 EIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF-SPVLVAA--GRQNNFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i-~p~~~~~--~~~~~~~~~~~~~~~~~~~~~  474 (509)
                      .....+..+............+..|.+|++.|+++.|+.+....+|+.+ +|.+.+.  ...++...|.+.+++++++++
T Consensus       350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~  429 (452)
T PRK11273        350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  429 (452)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            2111122222221222233456779999999999999999888887654 6877762  223455566666666666666


Q ss_pred             HHhhcc
Q 040646          475 FVIGLP  480 (509)
Q Consensus       475 ~~~~~~  480 (509)
                      +..++.
T Consensus       430 ~~~~~~  435 (452)
T PRK11273        430 LLIVVM  435 (452)
T ss_pred             HHHHHh
Confidence            554443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-34  Score=263.79  Aligned_cols=425  Identities=19%  Similarity=0.226  Sum_probs=294.8

Q ss_pred             CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646           30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK  109 (509)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (509)
                      ..+++...+.+.+.+.|.|++|.++++.+..                     ..++.|....    ...=+.   .+...
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~---------------------il~~lY~~~~----~~~g~~---ps~i~   86 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTK---------------------ILGYLYYHGD----ESGGHY---PSGVL   86 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHH---------------------HHHHHhcCCC----CCCCcC---CchHH
Confidence            4577778889999999999999999988611                     0111111110    000011   22356


Q ss_pred             chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHhhccchhhhhh
Q 040646          110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN-------MWIYSVLRFINGFGRATIGTCA  182 (509)
Q Consensus       110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~-------~~~l~~~r~l~G~~~g~~~~~~  182 (509)
                      +.+..+..+|..+||+++|++.|| +|||+++...+++..+++++++++..       .+++.+.|++.|+|.|+-+|..
T Consensus        87 ~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS  165 (538)
T KOG0252|consen   87 ALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS  165 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcch
Confidence            888899999999999999999999 99999999999999999998887532       6789999999999999999999


Q ss_pred             eeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc--------C--------CcchHHHHHHHhhHHHHHHHhhee
Q 040646          183 IVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR--------G--------SSWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       183 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~--------~--------~~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      .+..+|...+++||...+...+..+.|.+.|.+++.++.        .        .=||..+.+.++++++.. ..++.
T Consensus       166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-y~Rl~  244 (538)
T KOG0252|consen  166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-YFRLK  244 (538)
T ss_pred             HHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence            999999999999999999998888888888777653321        1        239999999999998854 67788


Q ss_pred             ecCchHHHHhcC-CHHHHHHHHHHHHhhcCCccccccccCcccccc--cccccchhHHHHHHhchHHHHHHHHHHHHHHH
Q 040646          247 VRESPRWLFIQG-RKEEAVSIIKSISTSENQRSLIMDFNNVSFEQE--TWNVDLYSAIKILVEKKWALRRLSAIMVTGFG  323 (509)
Q Consensus       247 ~~esp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  323 (509)
                      +|||++|..... +.+.+.   .+.     .+....+.++.+....  ..+++....+...+..+ .-+.++..+..|+.
T Consensus       245 M~Et~~Y~al~~~~~~~a~---~d~-----~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFl  315 (538)
T KOG0252|consen  245 MPETARYTALVSKKLKQAA---GDM-----KKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFL  315 (538)
T ss_pred             CCcchhHHHHhhcCHhhhh---hcc-----ccccccccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHh
Confidence            999998753322 222221   111     1111111111111110  11111112233344333 34677888888998


Q ss_pred             HhHhhhccccccc----cCCchH----H--------HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646          324 IGMVYYGMPLGLG----SLSFNL----Y--------LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC  387 (509)
Q Consensus       324 ~~~~~~~~~~~~~----~~g~~~----~--------~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~  387 (509)
                      ....+|...++..    ..|..+    .        ....+.....++|.++...++|++|||+..+.++.++.+..+.+
T Consensus       316 lDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~  395 (538)
T KOG0252|consen  316 LDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVI  395 (538)
T ss_pred             hhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHH
Confidence            8888877654432    233221    1        11233335566788888899999999999999999999888877


Q ss_pred             HHhccch---hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-------ccc
Q 040646          388 VVMGKIW---TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-------RQN  457 (509)
Q Consensus       388 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-------~~~  457 (509)
                      ....++.   ....+...+..+++..+.......+.+|.+|++.|+++.|+....+-.|++++.......       ..+
T Consensus       396 ~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g  475 (538)
T KOG0252|consen  396 AGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG  475 (538)
T ss_pred             cCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc
Confidence            7644321   111122222233333344445678899999999999999999999999999988887632       234


Q ss_pred             chhHHHHHHHHHHHHHHHHhhccCCCCCCCcccHHH
Q 040646          458 NFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDE  493 (509)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (509)
                      ....+.+++.+.+++.++.+++||+++++++|..++
T Consensus       476 ~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e  511 (538)
T KOG0252|consen  476 VRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNE  511 (538)
T ss_pred             chHHHHHHHHHHHHhHheeEEeecccccCHHHhcCh
Confidence            556788899999888888889999999998876433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=7.1e-33  Score=269.95  Aligned_cols=342  Identities=11%  Similarity=0.064  Sum_probs=247.3

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      .|.+.+|+|+   ++.+.|++.+++.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.
T Consensus        26 ~~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (377)
T TIGR00890        26 APPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA  101 (377)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999   55589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+.....+.|++| ++|+++.++...+.++|..+++.+ +.+.+..+||+.|++.+++.++..+..+++++|+
T Consensus       102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  180 (377)
T TIGR00890       102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP  180 (377)
T ss_pred             hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            99999888888888888887 679999999999999998765544 6777778999999999988888766666666665


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      |+.    .+.+            ++                 +.+++..+.++.++++..+......+...+........
T Consensus       181 ~~~----~~~~------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (377)
T TIGR00890       181 PGQ----LIKT------------NI-----------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGL  227 (377)
T ss_pred             chh----cccc------------Cc-----------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHH
Confidence            421    0000            00                 00001123456777776544433333332222222222


Q ss_pred             cccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      .+.+.++.+.+...   ...+..+..+++.++.+++.||++||+.+..+..+..++.+.+................+.++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  307 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFF  307 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Confidence            23344556655433   344555778889999999999999999988888777777666655433222222222233334


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHH
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGL  471 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~  471 (509)
                      ..+...+....+..|.+|+++|+++.|+.+....+|..++|.+.+..  ..++...+.+.+++.++
T Consensus       308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence            44444456677889999999999999999999999999999988833  23344445555544443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=7.4e-39  Score=319.42  Aligned_cols=380  Identities=28%  Similarity=0.460  Sum_probs=277.1

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhhccchhhhhhe
Q 040646          107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---NMWIYSVLRFINGFGRATIGTCAI  183 (509)
Q Consensus       107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~  183 (509)
                      .+.+++.+..++|..+|++++|+++|| +|||+.+.++.++..+++++.++++   |++.+.++|++.|++.|...+...
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            467899999999999999999999999 9999999999999999999999999   999999999999999999999999


Q ss_pred             eeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc----CCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCC
Q 040646          184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR----GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGR  259 (509)
Q Consensus       184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~  259 (509)
                      .++.|..|+++|++..++.+.++.+|.+++..+++...    +.+||..+.+.++++++.. +...++||||+|+..++|
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~wL~~~~~  203 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPRWLLSKGR  203 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccceeccccc
Confidence            99999999999999999999999999999888764332    2469999999999988754 556889999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHH-----HHhHhhhccccc
Q 040646          260 KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGF-----GIGMVYYGMPLG  334 (509)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  334 (509)
                      .+|+++.+++.++.+   ..+++.++...+.++.++. +.+++++++++..++.....+....     +.....+..+..
T Consensus       204 ~~~A~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i  279 (451)
T PF00083_consen  204 DEEAEKVLRKLRGKE---IEDEEIEEIKAEKKESQES-KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI  279 (451)
T ss_pred             ccccccccccccccc---ccccccccccccccccccc-ceeeeecccccccccccccccccccccccccccccccccccc
Confidence            999998888854421   1111111111111111111 1456677776543333333332222     223344455666


Q ss_pred             cccCCchHH-HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH--H-hccch----hHHHHHHHHHHH
Q 040646          335 LGSLSFNLY-LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCV--V-MGKIW----TSVEIGLELVAF  406 (509)
Q Consensus       335 ~~~~g~~~~-~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~~~~~  406 (509)
                      .+..+.+.. ....+.++..+++.+++.++.||+|||++++.+..+++++.+.+.  . ...+.    ....+....+..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  359 (451)
T PF00083_consen  280 FENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFF  359 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence            666666655 444555677788888889999999999999988888777776664  1 11111    111222222222


Q ss_pred             HHHH-HHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHH-HhhccCC
Q 040646          407 FSAC-TAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLF-VIGLPET  482 (509)
Q Consensus       407 ~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~  482 (509)
                      .... +..+..+.+..|.+|++.|+++.++....+.+++++.|.+.....  .+....+.++++++++..++ .+++|||
T Consensus       360 ~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  360 AFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            2222 334567789999999999999999999999999998887765322  22244556666555555544 4788999


Q ss_pred             CCCCCcccHH
Q 040646          483 RDTQLSDTMD  492 (509)
Q Consensus       483 ~~~~~~~~~~  492 (509)
                      |+++++|.++
T Consensus       440 ~g~~l~ei~~  449 (451)
T PF00083_consen  440 KGKTLEEIQE  449 (451)
T ss_pred             CCCCHHHHHh
Confidence            9999887654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.3e-31  Score=263.15  Aligned_cols=379  Identities=22%  Similarity=0.278  Sum_probs=267.3

Q ss_pred             CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646           30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK  109 (509)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (509)
                      .++++++.+..+.+..+..+.+.....+.                                 .|.+.+++|.   +..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~---~~~~~   54 (398)
T TIGR00895        11 LSRYQWRAIILSFLIMLMDGYDLAAMGFA---------------------------------APAISAEWGL---DPVQL   54 (398)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhh---------------------------------HHHHhhccCC---CHHHH
Confidence            45677777777777888888877666664                                 7899999999   44579


Q ss_pred             chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646          110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL  189 (509)
Q Consensus       110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~  189 (509)
                      +++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|+
T Consensus        55 ~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  133 (398)
T TIGR00895        55 GFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY  133 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH
Q 040646          190 VGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK  268 (509)
Q Consensus       190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~  268 (509)
                      +|+++|++++++...+..+|..+++.+ +.+.+..+||+.|++.++..++..++...++||+|++...+ +.++..+..+
T Consensus       134 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  212 (398)
T TIGR00895       134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVN  212 (398)
T ss_pred             cCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHH
Confidence            999999999999999999999999998 57778889999999987666665666677889988765444 3333333333


Q ss_pred             HHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHH---HHHHHHHHHhHhhhccccccccCCchHHHH
Q 040646          269 SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLS---AIMVTGFGIGMVYYGMPLGLGSLSFNLYLS  345 (509)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  345 (509)
                      +....... +.+.+.   . +++.+++......+.+++++..+....   ...+............|++.++.+.+....
T Consensus       213 ~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  287 (398)
T TIGR00895       213 AIAPQMQA-EAQSAL---P-EQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLA  287 (398)
T ss_pred             HHHHhccc-cccccc---c-ccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            33221111 110000   0 000011111112233333332222111   111222222333334466666667665443


Q ss_pred             ---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646          346 ---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE  422 (509)
Q Consensus       346 ---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (509)
                         .....++.+++.++.+++.||++||+...... +..+...++..... +........++.+++.+...+...++..|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  365 (398)
T TIGR00895       288 ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTLF-SPTLLLLLGAIAGFFVNGGQSGLYALMAL  365 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               34455778899999999999999995444333 33333333332112 22333333445556666677888899999


Q ss_pred             ccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .+|++.|+++.|+.+....+|..++|.+.+.
T Consensus       366 ~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       366 FYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999999999999999999998873

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=4.7e-32  Score=266.89  Aligned_cols=372  Identities=16%  Similarity=0.215  Sum_probs=256.7

Q ss_pred             CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646           30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK  109 (509)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (509)
                      ++++||+.+..+.++++.++++.......                                 .|.+++++|+   +..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~l~~~~~~---s~~~~   49 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV---------------------------------LAEVAGEFGL---TTVDA   49 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCC---ChhhH
Confidence            56789999999999999999999888885                                 8999999999   44589


Q ss_pred             chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646          110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL  189 (509)
Q Consensus       110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~  189 (509)
                      +++.+.+.++..+++++.|.++|| +|||+++.++.++.++++++++++++++.+++.|++.|++.+...+...+++.|+
T Consensus        50 g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~  128 (405)
T TIGR00891        50 ASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIES  128 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc--chHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHH
Q 040646          190 VGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS--WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSI  266 (509)
Q Consensus       190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~--wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~  266 (509)
                      +|+++|+++.++.+.+..+|..+++.++ .+....+  ||+.|++.+++.++. +.....+||++++...+++.++..+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (405)
T TIGR00891       129 WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTM  207 (405)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhH
Confidence            9999999999999999999999999984 5555444  999998876666553 44556778887543222211111111


Q ss_pred             HHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchH--HHHHHHHHHHHHHHHhHhhhcccccc-ccCCchHH
Q 040646          267 IKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW--ALRRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLY  343 (509)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~  343 (509)
                      .++..+  +++...           ...++.....++..+++.  +........+............|.+. ++.|.+..
T Consensus       208 ~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  274 (405)
T TIGR00891       208 VDILYG--GEHRIA-----------NIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPH  274 (405)
T ss_pred             HHHHhc--cchhhh-----------hhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHH
Confidence            111110  000000           000000001111111111  00011111111111112222233333 44666654


Q ss_pred             HH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q 040646          344 LS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYT  420 (509)
Q Consensus       344 ~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (509)
                      ..   .....++.+++.++.+++.||+|||+.+..+..+..+..+....... ..........+..+......+....+.
T Consensus       275 ~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (405)
T TIGR00891       275 TVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA-NVAVLGLGLFFQQMLVQGIWGILPKHL  353 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHccchhhHHHHH
Confidence            43   34455788899999999999999999888776655333332222222 222222221222233334456677888


Q ss_pred             ccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          421 LELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       421 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .|.+|++.|+++.|+.+....+|..++|.+.+.
T Consensus       354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~  386 (405)
T TIGR00891       354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL  386 (405)
T ss_pred             hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999884

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=6.3e-32  Score=270.16  Aligned_cols=417  Identities=17%  Similarity=0.123  Sum_probs=272.3

Q ss_pred             CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccc
Q 040646           29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI  108 (509)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (509)
                      .+++.++++..++++++...+.|+...++.......     +.+..+..|..      .+.+..+....|+++   ++.+
T Consensus        12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~---s~~~   77 (465)
T TIGR00894        12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVN-----KENSTDLACLS------AENELDNIKNPNFKW---SGAL   77 (465)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEccc-----CCCCCCccccc------cccccccccCCCCCC---CHHH
Confidence            356788889999999999999999888886332211     11111111110      011112233447888   5558


Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHhhccchhhhhheeee
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS--TNMWIYSVLRFINGFGRATIGTCAIVLS  186 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i  186 (509)
                      .|++.+.+.+++.+++++.|+++|| +|||+++..+.++++++++++.++  .+++.+++.|+++|++.+...+....++
T Consensus        78 ~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~  156 (465)
T TIGR00894        78 QGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKII  156 (465)
T ss_pred             hhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHH
Confidence            9999999999999999999999999 999999999999999999887654  4588999999999999999999999999


Q ss_pred             EeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHH
Q 040646          187 TELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAV  264 (509)
Q Consensus       187 ~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~  264 (509)
                      .|++|+++|++++++...+..+|.++++++ +.+... .+||+.|++.+++.++..++.+.+.+|+|+... +.+++|. 
T Consensus       157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~-  234 (465)
T TIGR00894       157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK-  234 (465)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH-
Confidence            999999999999999999999999999998 566666 499999999999888776666666777774210 1111111 


Q ss_pred             HHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccc-cCCchHH
Q 040646          265 SIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLG-SLSFNLY  343 (509)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~  343 (509)
                      +   .+....+              ++.++.+.+.+++++++++..+...+..+...........++|.+++ ..|.+..
T Consensus       235 ~---~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~  297 (465)
T TIGR00894       235 K---YINSSLQ--------------GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGK  297 (465)
T ss_pred             H---HHHhhcc--------------cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence            1   1100000              00000111235788888888766666555555555544445565554 4677654


Q ss_pred             HHH---HHHHhhhhhHHHHHHHHhhhcCchhHH--------HHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHH
Q 040646          344 LSV---TFNALSELPASLITFFLIGKLKRKSSL--------LGFTIMSGVCSVLCVVMG-KIWTSVEIGLELVAFFSACT  411 (509)
Q Consensus       344 ~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  411 (509)
                      ...   .+..++.+++.+++|+++||+++|+..        ..+..........+.... .......+....+.++..+.
T Consensus       298 ~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  377 (465)
T TIGR00894       298 ENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSG  377 (465)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhh
Confidence            443   334577888999999999997644211        111111111111111111 11222222223333333333


Q ss_pred             HhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc----c-chhHHHHHHHHHHHHHHHHhhcc
Q 040646          412 AFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ----N-NFLSYGIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       412 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~  480 (509)
                      ..+.......|..|. .+|.+.|+.+..+.+|++++|.+.+....    + ....+.+.++..+++.++.....
T Consensus       378 ~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       378 PLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             hhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            334444556677765 79999999999999999999999984221    1 33455666666666655544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=5.2e-32  Score=265.77  Aligned_cols=365  Identities=16%  Similarity=0.160  Sum_probs=254.3

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      .|.+++++|+   +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.
T Consensus        17 ~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   92 (399)
T TIGR00893        17 APMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLL   92 (399)
T ss_pred             HHHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            7889999999   45589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+....++.|++|+++|++++++.+....+|.++++.+ +.+....+||+.|++.+++.++..+...+..||+
T Consensus        93 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893        93 GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            999999999999999999999999999999999999999999998 5677888999999999888887666666677776


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      |+..  +...++.++...      +  ....+     .+.++++++...+.++.+++|.++......+............
T Consensus       173 ~~~~--~~~~~~~~~~~~------~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
T TIGR00893       173 PQKA--KWLTEEEKYIVV------G--GLLAE-----QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTW  237 (399)
T ss_pred             CCcc--ccCCHHHHhhcc------h--hhccc-----cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            5311  000111100000      0  00000     0011111222345677888887666555555555555544444


Q ss_pred             cccccc-cCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhH--HHHHHH--HHHH-HHHHHHHhc-cchhHHHHH
Q 040646          331 MPLGLG-SLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSS--LLGFTI--MSGV-CSVLCVVMG-KIWTSVEIG  400 (509)
Q Consensus       331 ~~~~~~-~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~--~~~~~~--~~~~-~~~~~~~~~-~~~~~~~~~  400 (509)
                      .|.+++ ..+.+....   .....++.+++.++.+++.||++||+.  ......  ...+ ..+...... .+.......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (399)
T TIGR00893       238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALA  317 (399)
T ss_pred             HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            555543 456654433   344457788899999999999999862  111111  1111 111111111 112222222


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc--c-chhHHHHHHHHHHHHHHHH
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ--N-NFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~  476 (509)
                      ...+..+..+ ..+....+..|.+|++.|+++.|+.+....+|..++|.+.+....  + ....+.+.+++.+++.+..
T Consensus       318 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       318 LVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            2233333333 567888999999999999999999999999999999999884322  2 3445555555555554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.8e-31  Score=260.33  Aligned_cols=347  Identities=12%  Similarity=0.061  Sum_probs=240.7

Q ss_pred             CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      .+|.+++|+|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+..+++++.+++++++|++.+++.|++
T Consensus        31 ~lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l  106 (393)
T PRK09705         31 LLPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYPQSALLLSSALL  106 (393)
T ss_pred             hHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence            38999999999   55589999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHHHHHHhheee-
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTILYCILVRFLV-  247 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~-  247 (509)
                      +|++.+...+....++.|++| ++|+++++++..+..+|..+++.+ +.+.++. +||+.+.+.++..++.. ..++.. 
T Consensus       107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~  184 (393)
T PRK09705        107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL-FAWWWQS  184 (393)
T ss_pred             HHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHh
Confidence            999999999999999999997 889999999999999999998888 4555554 89998877666554432 222211 


Q ss_pred             cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646          248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV  327 (509)
Q Consensus       248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (509)
                      ++.|+       .+            ++               +  +.    +.++.++++..+.......+........
T Consensus       185 ~~~~~-------~~------------~~---------------~--~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~  224 (393)
T PRK09705        185 AREVA-------SS------------HK---------------T--TT----TPVRVVFTPRAWTLGVYFGLINGGYASL  224 (393)
T ss_pred             cCCCc-------cc------------cC---------------C--Cc----CCcccccCHhHHHHHHHHHHHHHHHHHH
Confidence            11110       00            00               0  00    0112334444333333333333333333


Q ss_pred             hhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          328 YYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      ....|.++++.|.+....   ..+.+++.+++.++.+++.||++||+....+..+..++..++...+..... . . ..+
T Consensus       225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~-~~l  301 (393)
T PRK09705        225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-L-W-AMV  301 (393)
T ss_pred             HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH-H-H-HHH
Confidence            344455556677765443   445568889999999999999999998888877766665554433332211 1 1 223


Q ss_pred             HHHHHHHHhHHHHhhccccc-chhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHH-Hhhc
Q 040646          405 AFFSACTAFSLLLIYTLELF-PTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGLF-VIGL  479 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~  479 (509)
                      .+++.+..++.......+.. |++.+++..|+.+....++..++|.+.+...   .++...+.+.+++.++..+. ..+.
T Consensus       302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            33444445555555555666 4678999999999999999999999888322   22344455555544444444 3455


Q ss_pred             cCCCCCC
Q 040646          480 PETRDTQ  486 (509)
Q Consensus       480 ~~~~~~~  486 (509)
                      ||++.+.
T Consensus       382 ~~~~~~~  388 (393)
T PRK09705        382 PARFPQL  388 (393)
T ss_pred             cccccch
Confidence            6665544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.7e-31  Score=267.99  Aligned_cols=377  Identities=12%  Similarity=0.011  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchhH
Q 040646           34 QLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPA  113 (509)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  113 (509)
                      +|..+..++++.+....|..+.+..                                 +|++.+|+|.+   ..+.+|+.
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a---------------------------------~p~i~~~l~~s---~~~~~~~~   47 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA---------------------------------APTLSMTLGAS---GNELLWII   47 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCC---HhHHHHHH
Confidence            4667888999999999999888885                                 89999999994   44799999


Q ss_pred             HHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec-cC
Q 040646          114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV-GK  192 (509)
Q Consensus       114 s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~  192 (509)
                      +.|.+++.++++++|+++|| +|||+++..+.++++++++++++++|++.++++|+++|++.+...+.....+.+.+ |+
T Consensus        48 ~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~  126 (495)
T PRK14995         48 DIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEE  126 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999 99999999999999999999999999999999999999999998888888777765 67


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH---
Q 040646          193 KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK---  268 (509)
Q Consensus       193 ~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~---  268 (509)
                      ++|+++++++.....+|..++|.+ +.+.++.+||+.|++...++++..++..+++||+|+.  .+++.+.......   
T Consensus       127 ~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~  204 (495)
T PRK14995        127 KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVA  204 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHH
Confidence            999999999999999999999999 5777888999999998877777666666778876531  0111111110000   


Q ss_pred             ---HHHhhcCCccccccccCcc---------------cccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          269 ---SISTSENQRSLIMDFNNVS---------------FEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       269 ---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                         ......+...  .......               ...+.+.+++.. -.++++++.+.......+..........+.
T Consensus       205 ~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~-~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~  281 (495)
T PRK14995        205 ILLLVYSAKTALK--GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMI-DMRLFTHRIILSGVVMAMTAMITLVGFELL  281 (495)
T ss_pred             HHHHHHHHHhccc--cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-CHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence               0000000000  0000000               000111111111 145777877655555554444444444445


Q ss_pred             ccccccc-CCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHH
Q 040646          331 MPLGLGS-LSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK-IWTSVEIGLELVA  405 (509)
Q Consensus       331 ~~~~~~~-~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  405 (509)
                      .|.+++. .|.++...+.   ...++..++.++.|++.||+|+|+.+..+.++.+++.+.+..... ...+......++.
T Consensus       282 ~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  361 (495)
T PRK14995        282 MAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALL  361 (495)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            5655544 5777655543   344777888999999999999999888887777776655544322 2223333344555


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      +++.+...+.......+..|+++++.+.++.++...+|+.+++.+.+
T Consensus       362 G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g  408 (495)
T PRK14995        362 GFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG  408 (495)
T ss_pred             HHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666677778888999999999999999999999998888877

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=2.8e-31  Score=264.69  Aligned_cols=383  Identities=15%  Similarity=0.070  Sum_probs=245.8

Q ss_pred             CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccc
Q 040646           29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI  108 (509)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  108 (509)
                      .+.+.+++.+....+..+....+.+.....                                 .|.+.+|+|+   +..+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~l~~~~gl---s~~~   72 (476)
T PLN00028         29 SFARPHMRAFHLSWISFFTCFVSTFAAAPL---------------------------------LPIIRDNLNL---TKSD   72 (476)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHcCC---CHHH
Confidence            344556666666666666666655444432                                 7899999999   4457


Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      .+++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.++++++++++.+++.|++.|++.+... ....++.|
T Consensus        73 ~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~  150 (476)
T PLN00028         73 IGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMST  150 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence            8999999999999999999999999 999999999999999999999999999999999999999987643 45567899


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHHH----H-Hhc-----CCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcC
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIA----Y-INR-----GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQG  258 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~----~-~~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~  258 (509)
                      ++|+++|++++++......+|..+++.+.    . +..     ..|||+.|++.+++.++..++.+++.++.|+     +
T Consensus       151 ~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~  225 (476)
T PLN00028        151 MFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----G  225 (476)
T ss_pred             hcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----C
Confidence            99999999999998876666666654442    1 111     2589999999999888766555444444442     1


Q ss_pred             CHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-cc
Q 040646          259 RKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GS  337 (509)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  337 (509)
                      +.++.       .+ +.               +.++.+....+++.++++..+...+..+.............|.++ +.
T Consensus       226 ~~~~~-------~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~  282 (476)
T PLN00028        226 NYREL-------KK-SG---------------TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR  282 (476)
T ss_pred             chhhH-------Hh-cC---------------ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            10000       00 00               000001112355666776654433332222222222222334443 44


Q ss_pred             CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchh-------HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          338 LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKS-------SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       338 ~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      .|.+.....   .+..++.+++.+++|+++||++||+       .......+.++..+++..  ...........++..+
T Consensus       283 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~--~~~~~~~~~~~~l~~~  360 (476)
T PLN00028        283 FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR--ANSLGAAIVVMILFSI  360 (476)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHH
Confidence            577655443   4455788899999999999998652       222222222222222222  2222222222233333


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHhhcc
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR-QNNFLSYGIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  480 (509)
                      +.....+..+.+..+..| ++++++.|+.+..+.+|++++|.+.+... .++...+.+.+++.++++++.++.+
T Consensus       361 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        361 FVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            333444556666777655 68999999999988999999998876332 2345567777777777766655543

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.6e-30  Score=257.31  Aligned_cols=345  Identities=17%  Similarity=0.163  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc-hhH
Q 040646           35 LVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG-LPA  113 (509)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~  113 (509)
                      ++....+.++.+++++|....++.                                 .|.+.+|++.+..   +.+ +..
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~i~~~~~~~~~---~~~~~~~   57 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFY---------------------------------ATAIAKTFFPAGN---EFASLML   57 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCCCC---chHHHHH
Confidence            345677888999999999999986                                 8999999998543   333 333


Q ss_pred             HHH-----HHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhccchhhh
Q 040646          114 SSF-----FMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGRATIGT  180 (509)
Q Consensus       114 s~~-----~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~  180 (509)
                      +..     .++..+++++.|+++|| +|||+.++.+.+++++++++++++++++        .++++|+++|++.+...+
T Consensus        58 ~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~  136 (434)
T PRK15075         58 TFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELG  136 (434)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHH
Confidence            322     23335788999999999 9999999999999999999999999987        468999999999999999


Q ss_pred             hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHH---------hcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYI---------NRGSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      ....++.|++|+++|++++++...+..+|..+++.++..         .++.|||++|++..+...+ ........||++
T Consensus       137 ~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~  215 (434)
T PRK15075        137 GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETE  215 (434)
T ss_pred             HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCH
Confidence            889999999999999999999998888888877777432         2468999999875544322 222222334432


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHH-HHHHHHHHhHhhhc
Q 040646          252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSA-IMVTGFGIGMVYYG  330 (509)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~  330 (509)
                      ++...+                .+                   .+....+++..+++..+..... .+..........+.
T Consensus       216 ~~~~~~----------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (434)
T PRK15075        216 EFLARK----------------HR-------------------PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVY  260 (434)
T ss_pred             HHHHhh----------------hc-------------------cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            210000                00                   0000112233333322211111 11122223333444


Q ss_pred             ccccccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHH-HHHH-hccchhHHHHHHHHH
Q 040646          331 MPLGLGS-LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSV-LCVV-MGKIWTSVEIGLELV  404 (509)
Q Consensus       331 ~~~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  404 (509)
                      .|.++++ .|.+....   .....++.+++.++.|+++||+|||+.+..+..+..+... .+.. ..............+
T Consensus       261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
T PRK15075        261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW  340 (434)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            5665554 57765443   3344577788999999999999999987766544433221 1111 122222222222222


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHh-HhhHHHHHHHH
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALV-FGGVFSPVLVA  452 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~i~p~~~~  452 (509)
                      ..++.+...+..+.+..|.+|++.|+++.++.+.... +++.++|.+.+
T Consensus       341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g  389 (434)
T PRK15075        341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST  389 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence            2334444445566788999999999999998765554 45777888887

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=3.6e-30  Score=250.91  Aligned_cols=316  Identities=12%  Similarity=0.160  Sum_probs=227.6

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+.+|+|++   ..+.|+..+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|+++
T Consensus        43 l~~~~~~~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  118 (394)
T PRK10213         43 LTPMAQDLGIS---EGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACL  118 (394)
T ss_pred             HHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence            68899999994   4589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|++|+++|+++.++...+.++|.+++|++ +.+.+..+||+.|++.++++++..+.....+||+
T Consensus       119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999999999999999 4677778999999998877766444444445664


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH-hhh
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM-VYY  329 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~  329 (509)
                      |+.     + +                                  +.....++.+++|.++......+........ ..+
T Consensus       199 ~~~-----~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T PRK10213        199 PGE-----P-S----------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTY  238 (394)
T ss_pred             Ccc-----c-c----------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            310     0 0                                  0001234567777765544443333333222 233


Q ss_pred             ccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      ..|.+.++.|.+....   ....+++.+++.++.+++.||.++ +.+.....+..+....+..... ..+......++.+
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~G  316 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGS-DKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence            3466777777776443   334457788899999999999544 4433333333333222222222 2333333344444


Q ss_pred             HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646          407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG  454 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~  454 (509)
                      ++.+...+...+++.+..|+ .++...+.......+|..++|.+.+..
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l  363 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYA  363 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556666677777774 456667777777788888999888843

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=9.2e-31  Score=264.45  Aligned_cols=376  Identities=17%  Similarity=0.201  Sum_probs=251.0

Q ss_pred             CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646           30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK  109 (509)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (509)
                      ..+.+++.+..++++++.++++.......                                 .|.+.+++|++   ..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~i~~~~~~s---~~~~   57 (496)
T PRK03893         14 LNRAQWKAFSAAWLGYLLDGFDFVLITLV---------------------------------LTEVQGEFGLT---TVQA   57 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCC---HHHH
Confidence            34678888889999999999998777765                                 78999999994   4478


Q ss_pred             chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646          110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL  189 (509)
Q Consensus       110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~  189 (509)
                      +++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|+
T Consensus        58 ~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  136 (496)
T PRK03893         58 ASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIES  136 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH
Q 040646          190 VGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK  268 (509)
Q Consensus       190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~  268 (509)
                      +|+++|++++++...+..+|..+++.+ +.+.+..+||+.|++..++.++ .+.....+||++++...+++.++..+..+
T Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  215 (496)
T PRK03893        137 WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVD  215 (496)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHH
Confidence            999999999999999999999999998 5777888999999875554443 33444566776654221111110000000


Q ss_pred             HHHhhcCCccccccccCcccccccccccchhHHHHHHh---------------------------chHHHHHHHHHHHHH
Q 040646          269 SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE---------------------------KKWALRRLSAIMVTG  321 (509)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~~~~~~~~  321 (509)
                      .... .+.+..       .   ..............+.                           ++..+..........
T Consensus       216 ~~~~-~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (496)
T PRK03893        216 ILYR-GEHRII-------N---ILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVV  284 (496)
T ss_pred             HHhc-chhHHH-------H---HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            0000 000000       0   0000000000000000                           000000000000000


Q ss_pred             HHHh----Hhhhcccccc-ccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc
Q 040646          322 FGIG----MVYYGMPLGL-GSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI  393 (509)
Q Consensus       322 ~~~~----~~~~~~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~  393 (509)
                      +...    .....+|.++ ++.|.+....   .....++.+++.++.|++.||+|||+.+..+..+..+..+.+......
T Consensus       285 ~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  364 (496)
T PRK03893        285 LFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGA  364 (496)
T ss_pred             HHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccc
Confidence            1000    0112345555 4677765444   344457788899999999999999998887766555554433332222


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646          394 WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG  454 (509)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~  454 (509)
                      ..+......++..+......+....+..|.+|++.|++++|+.+....+|+.++|.+.+..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        365 NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence            2222222212211222223345667888999999999999999999999999999998843

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1.9e-31  Score=264.61  Aligned_cols=362  Identities=15%  Similarity=0.124  Sum_probs=237.3

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSV-LRFI  170 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l  170 (509)
                      +|++.+++|++   ..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++.++++++++++++++.+++ .|++
T Consensus        42 ~~~i~~~~g~s---~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  117 (455)
T TIGR00892        42 FKELQQIFQAT---YSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI  117 (455)
T ss_pred             HHHHHHHhCcc---hhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            78999999994   4479999999999999999999999999 99999999999999999999999999998865 5799


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      .|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+ +.+.+..|||+.|++.+++.++..+..++..++
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~  196 (455)
T TIGR00892       118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPV  196 (455)
T ss_pred             HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999877777788889996 789999999999999999999888 577777899999999998877654444333333


Q ss_pred             chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646          250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY  329 (509)
Q Consensus       250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  329 (509)
                      .+..   +...++..       . ..+++...  ++.+.....++..+..+ .+++++|.++......++..++......
T Consensus       197 ~~~~---~~~~~~~~-------~-~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~  262 (455)
T TIGR00892       197 GPSQ---RVSKSKSK-------E-GLPPDGST--KKLSKKSTAEKINRFLD-FSLFTHRGFLVYLSGNVIMFLGFFAPII  262 (455)
T ss_pred             Cccc---cccccccc-------c-cCCCCCcc--ccccccchhhhhhhhcc-hHHhcCchHHHHHHHHHHHHHHccchHH
Confidence            2210   00000000       0 00000000  00000000000000001 2467777766555544444444433344


Q ss_pred             ccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhc--CchhHHHHH--HHHHHHHHHHHHHhccchhHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKL--KRKSSLLGF--TIMSGVCSVLCVVMGKIWTSVEIGLE  402 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~--gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (509)
                      .++.+.++.+.+.....   .+.+++.+++.++.+++.||.  ++|+.....  .++.+++.++...  .++.+......
T Consensus       263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~~i~~  340 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL--AGDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHH
Confidence            44555566677655543   334566777888899999973  333333322  2222232223222  22233333334


Q ss_pred             HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--c-cchhHHHHHHHHHHHHHH
Q 040646          403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--Q-NNFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~-~~~~~~~~~~~~~~~~~~  474 (509)
                      ++.+++.+...+...++..|.+|++++++++|+.+....+|.+++|.+.+...  . ++...+.+.+++.+++.+
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            44445555666777888899999999999999999999999999999998322  1 234455555555444443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.98  E-value=5.2e-30  Score=251.50  Aligned_cols=347  Identities=15%  Similarity=0.089  Sum_probs=237.1

Q ss_pred             Ccc-eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH--------hHHH
Q 040646           92 HTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS--------TNMW  162 (509)
Q Consensus        92 ~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~--------~~~~  162 (509)
                      +|. +++++|+   +..+.|++.+++.+++.+++++.|+++|| +|||+++..+.++.+++++++.++        .+++
T Consensus        38 l~~~i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (399)
T PRK05122         38 LPGYVHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLL  113 (399)
T ss_pred             HHHHHHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Confidence            454 6789999   55589999999999999999999999999 999999999999988887766553        2577


Q ss_pred             HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHH
Q 040646          163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCI  241 (509)
Q Consensus       163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~  241 (509)
                      .+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+ +.+....|||..+++.++..++.. 
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~-  192 (399)
T PRK05122        114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL-  192 (399)
T ss_pred             HHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-
Confidence            899999999999999999999999999999999999999999999999999998 467788899999887666655432 


Q ss_pred             HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646          242 LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG  321 (509)
Q Consensus       242 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  321 (509)
                      ......|++++     .+ ++                                   +.++++.+++.  +.......+..
T Consensus       193 ~~~~~~~~~~~-----~~-~~-----------------------------------~~~~~~~~~~~--~~~~~~~~~~~  229 (399)
T PRK05122        193 LLARPRPAVPP-----VK-GE-----------------------------------RLPFRRVLGRV--WPYGMGLALAS  229 (399)
T ss_pred             HHHhcCCCCCC-----CC-cc-----------------------------------chhHHHHHHHH--HHHHHHHHHHH
Confidence            22222232210     00 00                                   00122222211  11111111111


Q ss_pred             HHHhHhhhccccccccCCch-HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646          322 FGIGMVYYGMPLGLGSLSFN-LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG  400 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (509)
                      ++........+.+..+.+.+ .........++.+++.++.+++.||+++|+.+..+..+.+++.+.+....  +.+....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  307 (399)
T PRK05122        230 IGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALI  307 (399)
T ss_pred             HHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHH
Confidence            22222222223333333432 22333455677788899999999999999988887777777666555532  2333333


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhh
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIG  478 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      ..++.+++.+..++.......|..|++.|+++.|+.+....+|..++|.+.+..  ..++...+.+.+++.+++.+..+.
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555556666666777889999999999999999999988888887732  234455566666666666655555


Q ss_pred             ccCCCCCCCc
Q 040646          479 LPETRDTQLS  488 (509)
Q Consensus       479 ~~~~~~~~~~  488 (509)
                      ++++++|+.+
T Consensus       388 ~~~~~~~~~~  397 (399)
T PRK05122        388 LYRRAPRAVP  397 (399)
T ss_pred             hcccccccCC
Confidence            6655554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=1.3e-30  Score=262.76  Aligned_cols=378  Identities=14%  Similarity=0.117  Sum_probs=269.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchhHHH
Q 040646           36 VQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASS  115 (509)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~  115 (509)
                      +++..++++.+...+|.......                                 .|.+.+++|.+   ..+.+++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~p~~~~~~g~s---~~~~~~~~~~   45 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVA---------------------------------IPTIAGDLGSS---LSQVQWVITS   45 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHhcCCC---hhhhhHHHHH
Confidence            34566777888888887666664                                 89999999994   4479999999


Q ss_pred             HHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCccc
Q 040646          116 FFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRR  195 (509)
Q Consensus       116 ~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r  195 (509)
                      +.++..++.++.|+++|| +|||++++.+.++.+++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|
T Consensus        46 ~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r  124 (485)
T TIGR00711        46 YMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKR  124 (485)
T ss_pred             HHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHH
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHH-------
Q 040646          196 GQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSII-------  267 (509)
Q Consensus       196 ~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~-------  267 (509)
                      +++.+++..+..+|..++|.+ +++.++.+||+.|++.+.+.++..+...+.+||+++.  .+++.+.....+       
T Consensus       125 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~  202 (485)
T TIGR00711       125 GRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGS  202 (485)
T ss_pred             HHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHH
Confidence            999999999999999999998 5777889999999998888777665666667765431  111111111000       


Q ss_pred             -HHHHhhcCCccccccccCcc------------cccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccc
Q 040646          268 -KSISTSENQRSLIMDFNNVS------------FEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLG  334 (509)
Q Consensus       268 -~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (509)
                       .......++.+...+.....            ...+.+++++. .-.++++++.++...+..++..+......+..|.+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  281 (485)
T TIGR00711       203 LLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPL-VDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLY  281 (485)
T ss_pred             HHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCc-cCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00000000000000000000            00000111111 12356777776666555555555555455556666


Q ss_pred             ccc-CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH-h-ccchhHHHHHHHHHHHHH
Q 040646          335 LGS-LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV-M-GKIWTSVEIGLELVAFFS  408 (509)
Q Consensus       335 ~~~-~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  408 (509)
                      +++ .|.++....   ....++.+++.++.+++.||+|||+.+..+..+.+++..++.+ . +...........++.+++
T Consensus       282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  361 (485)
T TIGR00711       282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFG  361 (485)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence            654 576655443   3345778889999999999999999988888777777666652 2 222222333334444555


Q ss_pred             HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .+..++.......+..|+++++++.|+.+....+|+.+++.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  406 (485)
T TIGR00711       362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT  406 (485)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555566667788899999999999999999999999988873

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=9.8e-30  Score=247.52  Aligned_cols=336  Identities=12%  Similarity=0.087  Sum_probs=230.9

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+++|+|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.
T Consensus        26 l~~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~  101 (382)
T PRK10091         26 LTELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVS  101 (382)
T ss_pred             hHHHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            7899999999   44579999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+....++.|++++++|++++++...+..+|..+++.+ +.+.+..+||+.|++.++..++..+..++.+||.
T Consensus       102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999888888899999999999999999999999999999988 4666778999999999888777655555667775


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh-Hhhh
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG-MVYY  329 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~  329 (509)
                      ++    +.+.+ .                                  + ...+.++++..+.......+...+.. ...+
T Consensus       182 ~~----~~~~~-~----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (382)
T PRK10091        182 RD----EAKGG-L----------------------------------R-EQFHFLRSPAPWLIFAATMFGNAGVFAWFSY  221 (382)
T ss_pred             Cc----ccccC-H----------------------------------H-HHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            32    00000 0                                  0 01123445443333222222222221 1223


Q ss_pred             ccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      ..+++.+..|.+.....   ...+++.+++.++.+++.||+++|+.+..+..+.+++.+++....... +......++..
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~  300 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMK-TASLIFAFICC  300 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence            33444445676655443   445577889999999999999999998887777666665544322222 22222222222


Q ss_pred             HHHHHHhH-HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHH
Q 040646          407 FSACTAFS-LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       407 ~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~  474 (509)
                      .+.....+ .......+..|++.++.+  ..+....+|..++|.+.+...   .++...+.+.+++..+...
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~  370 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS  370 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence            22222222 222344455555555544  345667899999999888322   2344455555444444333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=2.1e-29  Score=247.63  Aligned_cols=324  Identities=13%  Similarity=0.083  Sum_probs=233.4

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+.+|+|+   +..+.++..+.+.+++.+++++.|+++|| +|||+++..+..+.+++.+++.++++++.+++.|++.
T Consensus        36 ~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  111 (406)
T PRK15402         36 MLAVVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQ  111 (406)
T ss_pred             hHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            6889999999   44589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|++|+++|++..++......+|..++|.+ +.+.+..+||+.|++.++..++..+..+...||+
T Consensus       112 G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  191 (406)
T PRK15402        112 GIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPET  191 (406)
T ss_pred             HhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999998888889999999999999999999988888899999998 5666778999999998888777655555566775


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      ++..   ++ +.                              +.++...++++++++|.++.......+...........
T Consensus       192 ~~~~---~~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (406)
T PRK15402        192 AGRV---GE-KL------------------------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIAL  237 (406)
T ss_pred             Cccc---cc-cc------------------------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4210   00 00                              00011124567788887655444433333322222222


Q ss_pred             ccccc-ccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHH
Q 040646          331 MPLGL-GSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG---KIWTSVEIGLEL  403 (509)
Q Consensus       331 ~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  403 (509)
                      .|.++ +..+.+.....   ....++.+++.++.+++.||+++|+.+..+.++..++..++....   ...........+
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            34433 44566654433   223356778899999999999999998888776666665554422   122222222233


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG  454 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~  454 (509)
                      +.+++.+...+......... +++++++..+..+....+|..+++.+.+..
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344444444444443333 347899999999999999999999998843

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=5.1e-30  Score=257.06  Aligned_cols=353  Identities=15%  Similarity=0.150  Sum_probs=248.4

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      .|.+.+|+|.+   ..+.+++.+.+.++..++.+++|+++|| +|||++++.+.++.+++.++++++++++.+++.|+++
T Consensus        33 ~p~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  108 (471)
T PRK10504         33 LPSMAQSLGES---PLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQ  108 (471)
T ss_pred             HHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            78999999994   4478999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|++|+++|+++.++.....++|..++|.+ +.+.++.+||+.|++......+..+......|+.
T Consensus       109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        109 GVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999999999999999999999999999999998 5777788999999998877666555555555654


Q ss_pred             hHHHHhcCCHHHHHHHHHH------HHhhcCCccccccccCc-------------ccccccccccchhHHHHHHhchHHH
Q 040646          251 PRWLFIQGRKEEAVSIIKS------ISTSENQRSLIMDFNNV-------------SFEQETWNVDLYSAIKILVEKKWAL  311 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~  311 (509)
                      +.   .+.+.+........      .....+.+.........             ...++.+.+++..+. +++++|.++
T Consensus       189 ~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~  264 (471)
T PRK10504        189 TM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFS  264 (471)
T ss_pred             cc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchH
Confidence            32   11122211110000      00000000000000000             000011111111122 478888876


Q ss_pred             HHHHHHHHHHHHHhHhhhcccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646          312 RRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC  387 (509)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~  387 (509)
                      ......++.++......+..|++.+. .|.++......   ..++.+++.++.+++.||+|||+.+..+..+.++...++
T Consensus       265 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~  344 (471)
T PRK10504        265 LGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLF  344 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            66665666666555555666777663 67665544333   335566677889999999999999988887777766655


Q ss_pred             HHhccch-hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          388 VVMGKIW-TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       388 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .+..... ........++.+++.+..++....+..+..|++.++.+.++.++...+|..++|.+.+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  410 (471)
T PRK10504        345 MLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG  410 (471)
T ss_pred             HhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            5543222 2222222333335555566677788888999999999999999999899888888876

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.2e-30  Score=251.83  Aligned_cols=367  Identities=15%  Similarity=0.148  Sum_probs=264.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchh
Q 040646           33 AQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLP  112 (509)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  112 (509)
                      ..+.++..+++.++....|..+++..                                .+..+.+|.+.   ...+.+.+
T Consensus        42 ~dl~i~~~~~~~y~~~~~d~~si~~a--------------------------------~l~g~~edl~~---~~~~l~~~   86 (495)
T KOG2533|consen   42 LDLFILPFLCYLYFHAYLDKSSIVNA--------------------------------SLSGLKEDLKL---VGNQLGVL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHhcchhcchhH--------------------------------HHcCCccccch---hhhhhhhH
Confidence            33444556677777777777666553                                24456788888   44589999


Q ss_pred             HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccC
Q 040646          113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGK  192 (509)
Q Consensus       113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~  192 (509)
                      .++|+++++++++++|.+.|| ++..+.+....+++++.+++....+|++.+++.|++.|+.++..+|....+++.|+.+
T Consensus        87 ~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~  165 (495)
T KOG2533|consen   87 DTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGK  165 (495)
T ss_pred             HHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh
Confidence            999999999999999999999 9999999999999999998988899999999999999999999999999999999999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646          193 KRRGQVGSIGFFCFTLGFLSLPAIAYI-------NRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS  265 (509)
Q Consensus       193 ~~r~~~~~~~~~~~~~G~~~~~~~~~~-------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~  265 (509)
                      ++|++.++++.+..++|.++|+++++.       ....||||.|++.+++.++.+++.++++|+.|....- .+.+|..-
T Consensus       166 ~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f-l~~~ek~~  244 (495)
T KOG2533|consen  166 SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF-LTDEEKEL  244 (495)
T ss_pred             hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc-cchHHHHH
Confidence            999999999999999999999999755       4567999999999999999999999999999861100 11111111


Q ss_pred             HHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHHH
Q 040646          266 IIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYL  344 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~  344 (509)
                      ..++.+. .+.            . ...++.++..+++.+++|..|...+..++.....+...+.+|+++++ .+++...
T Consensus       245 ~~~~~~~-~~~------------~-~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~  310 (495)
T KOG2533|consen  245 VVERLRE-SPS------------G-GIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ  310 (495)
T ss_pred             HHHHHHh-ccC------------C-CcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH
Confidence            1111211 110            0 00111455678999999998888888888877777777888888887 4465443


Q ss_pred             ---HHHHHHhhhhhHHHHHHHHhhh----cCchhHHHHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHHhHHH
Q 040646          345 ---SVTFNALSELPASLITFFLIGK----LKRKSSLLGFTIMSGVCS-VLCVVMGKIWTSVEIGLELVAFFSACTAFSLL  416 (509)
Q Consensus       345 ---~~~~~~~~~~~~~~~~g~l~dr----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (509)
                         ......++++++.+++|+++||    ..+|........+..+.. +.+...  ..........+.+..+.....+..
T Consensus       311 a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~  388 (495)
T KOG2533|consen  311 ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIA  388 (495)
T ss_pred             hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHH
Confidence               3455668999999999999999    555655555555444443 333332  222222222333334444555566


Q ss_pred             Hhhcccccchhhhhh-HHHHHHHHHhHhhHHHHHHHH
Q 040646          417 LIYTLELFPTCVRNS-AISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       417 ~~~~~~~~p~~~r~~-~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      ....++....+.|.. ..+........+++++|.+..
T Consensus       389 ~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~  425 (495)
T KOG2533|consen  389 LSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR  425 (495)
T ss_pred             HhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc
Confidence            666777665554444 444445555677777766664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=1.9e-29  Score=246.68  Aligned_cols=339  Identities=21%  Similarity=0.242  Sum_probs=243.1

Q ss_pred             CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      ..|.+.+|+|.   +..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|++
T Consensus        27 ~~p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  102 (385)
T TIGR00710        27 AFPEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFV  102 (385)
T ss_pred             cHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            37899999999   44589999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      .|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+ +.+.+..+||+.|++.++..++..+...+..||
T Consensus       103 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             HHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999998 566777899999999888877766566566777


Q ss_pred             chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646          250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY  329 (509)
Q Consensus       250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  329 (509)
                      +++.    ++++                               +.++...+.+++++++.++...+...+..........
T Consensus       183 ~~~~----~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (385)
T TIGR00710       183 TLPY----EARI-------------------------------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFS  227 (385)
T ss_pred             CCCC----cccC-------------------------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            5421    0000                               0001112456677777765554444443333333333


Q ss_pred             ccccccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc--c-chhHHHHHHH
Q 040646          330 GMPLGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG--K-IWTSVEIGLE  402 (509)
Q Consensus       330 ~~~~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~  402 (509)
                      ..|.+.+ ..+.++....   ....++.+++.++.+++.||+++|+.+..+..+..++.+++....  . ..........
T Consensus       228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (385)
T TIGR00710       228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM  307 (385)
T ss_pred             cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3454443 5666654443   344577888999999999999999988877766666655544422  1 1122222223


Q ss_pred             HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHH
Q 040646          403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVI  469 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~  469 (509)
                      .+.+++.+...+.......|..| +.++++.++.+.....++.+.+.+.+.........+.......
T Consensus       308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~  373 (385)
T TIGR00710       308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSCLVL  373 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHH
Confidence            33445555566677778888887 5689999998888765444444444433333334444433333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=2.7e-29  Score=242.13  Aligned_cols=344  Identities=11%  Similarity=0.008  Sum_probs=237.7

Q ss_pred             Ccceee-eeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----hHHHHHH
Q 040646           92 HTSIIS-EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-----TNMWIYS  165 (509)
Q Consensus        92 ~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~  165 (509)
                      .+.+.+ |+|+   +..|.+++.+++.+++.++.++.|++.|| +|.|+++.++.+++++.+++.+++     ++++.++
T Consensus        57 ~~~~~~~~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~ll  132 (462)
T PRK15034         57 TVNLNKIGFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFI  132 (462)
T ss_pred             HHHhhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH
Confidence            466655 8999   44589999999999999999999999999 999999999999999999999987     8999999


Q ss_pred             HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-----H-Hhc-------------CCcch
Q 040646          166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-----Y-INR-------------GSSWR  226 (509)
Q Consensus       166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-----~-~~~-------------~~~wr  226 (509)
                      +.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++.     . +..             ..+||
T Consensus       133 i~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~  211 (462)
T PRK15034        133 VIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLA  211 (462)
T ss_pred             HHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHH
Confidence            999999998 778999999999999999999999999766666655444332     1 111             33488


Q ss_pred             HHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHh
Q 040646          227 RIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE  306 (509)
Q Consensus       227 ~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  306 (509)
                      .+.++..++.++..++.+++.++.|.     .                                    +......++.+|
T Consensus       212 ~~~~~~~~~~iv~~i~~~~~~~~~~~-----~------------------------------------~~~~~~~~~vlk  250 (462)
T PRK15034        212 NAAWIWVPLLAIATIAAWSGMNDIAS-----S------------------------------------RASIADQLPVLQ  250 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccc-----c------------------------------------ccCHHHHHHHhC
Confidence            88888777777766666665554331     0                                    001123566888


Q ss_pred             chHHHHHHHHHHHHHHHHhHhhhccccccccCC-c-hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 040646          307 KKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLS-F-NLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCS  384 (509)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~  384 (509)
                      +|..|...+..+..+.+.....+.+|++.++.- . +......+..+...+.++++|+++||+|+++++.++.+.+.++.
T Consensus       251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence            888776666665554444444445565554411 1 11222334456778888999999999999999988887666665


Q ss_pred             HHHH-Hhccc---hhHHHHHHHHHHHHHHHHHhHHHHhhcccccch---------------------hhhhhHHHHHHHH
Q 040646          385 VLCV-VMGKI---WTSVEIGLELVAFFSACTAFSLLLIYTLELFPT---------------------CVRNSAISMVRQA  439 (509)
Q Consensus       385 ~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~  439 (509)
                      ..+. ..+..   ........++..++..+......+-++++.+|+                     ++-|.+.|+....
T Consensus       331 ~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~  410 (462)
T PRK15034        331 ALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAI  410 (462)
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHH
Confidence            4332 22221   222222222233334444445566666676664                     1467788999999


Q ss_pred             HhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHhhccC
Q 040646          440 LVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGLFVIGLPE  481 (509)
Q Consensus       440 ~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (509)
                      +.+|+++.|.+.+...   ..+...+..+.+..+++.++.++...
T Consensus       411 G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        411 GAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             HHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998877322   33444566666666666666554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.97  E-value=1.3e-29  Score=251.17  Aligned_cols=397  Identities=14%  Similarity=0.063  Sum_probs=250.0

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646           32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL  111 (509)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  111 (509)
                      +.++..+..+.+.+...+.+.....+.                                 .|.+++ +|+   +..+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~p~~~~-~g~---s~~~~g~   65 (438)
T TIGR00712        23 RLRWQVFLGIFFGYAAYYLVRKNFALA---------------------------------MPYLVE-QGF---SKGELGF   65 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHhh---------------------------------hHHHHH-cCC---CHhHhHH
Confidence            345555666666666666666555553                                 566665 588   4558999


Q ss_pred             hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646          112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----TNMWIYSVLRFINGFGRATIGTCAIVLST  187 (509)
Q Consensus       112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  187 (509)
                      +.+++.++..+++++.|+++|| +|||+++..+.++.+++.++.++.    ++++.+.+.|++.|++.+..++.....+.
T Consensus        66 ~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~  144 (438)
T TIGR00712        66 ALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMV  144 (438)
T ss_pred             HHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            9999999999999999999999 999999999999999998887764    46788889999999999998888889999


Q ss_pred             eeccCcccchhhhhhHHHHHHHHHHHHHH-HHHh-cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646          188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYIN-RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS  265 (509)
Q Consensus       188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~  265 (509)
                      |++|+++|++++++++.+..+|..+++.+ +... ...+||..|++.+++.++..+..++++||+|+....  +..+.  
T Consensus       145 ~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~--  220 (438)
T TIGR00712       145 HWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL--PPIEE--  220 (438)
T ss_pred             HhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC--CCchh--
Confidence            99999999999999999999999888776 4433 346899999999988887666667778887753100  00000  


Q ss_pred             HHHHHHhhcCCccccccccCcccccccccccchhH-HHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHH
Q 040646          266 IIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLY  343 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~  343 (509)
                          .   +++  ...+.   ..+.+. +.+.+.. .+.+++++.++...+...+.+..........|.++++ .|.+..
T Consensus       221 ----~---~~~--~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~  287 (438)
T TIGR00712       221 ----Y---RND--YPDDY---NEKAEQ-ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALD  287 (438)
T ss_pred             ----c---ccc--ccccc---cccccc-ccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChh
Confidence                0   000  00000   000000 0011111 2246677766655554444444433344445666554 566654


Q ss_pred             HH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHH---HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHH
Q 040646          344 LS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSG---VCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLL  417 (509)
Q Consensus       344 ~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (509)
                      ..   .....+.++++.++++++.||+++++....+.....   ++...+......+.+......+..++..........
T Consensus       288 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  367 (438)
T TIGR00712       288 KSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIG  367 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHH
Confidence            33   344557788999999999999964432222222211   111111221111222211111111121111112223


Q ss_pred             hhcccccchhhhhhHHHHHHHHHhHhh-HHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646          418 IYTLELFPTCVRNSAISMVRQALVFGG-VFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV-IGLPETR  483 (509)
Q Consensus       418 ~~~~~~~p~~~r~~~~g~~~~~~~~g~-~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  483 (509)
                      ....|.+|++.|+++.|+.+....+|+ .++|.+.+..  ..++...+.+.+++.+++.+.. +..+|.|
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            457799999999999999998887764 5788887732  2334455555555554444443 4445543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=1.2e-29  Score=247.93  Aligned_cols=369  Identities=14%  Similarity=0.094  Sum_probs=252.5

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchh
Q 040646           33 AQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLP  112 (509)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  112 (509)
                      .|+++...+++++++.+.+.......                                 +|++.+++|+   +..+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------------------------------~~~i~~~~~~---s~~~~g~~   47 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMV---------------------------------MGPIAEYFNL---PVSSMSNT   47 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhh---------------------------------hHHHHHHhCC---CHHHHHHH
Confidence            34566667777888888876656554                                 7999999999   55589999


Q ss_pred             HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccC
Q 040646          113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGK  192 (509)
Q Consensus       113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~  192 (509)
                      .+.+.+++.+++++.|++.|| +|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+
T Consensus        48 ~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~  126 (394)
T PRK03699         48 FTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG  126 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhccc
Confidence            999999999999999999999 9999999999999999999999999999999999999999999998899999999999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHH-HHHh-cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHH
Q 040646          193 KRRGQVGSIGFFCFTLGFLSLPAI-AYIN-RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI  270 (509)
Q Consensus       193 ~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~  270 (509)
                      ++|+++++..+....+|..++|.+ +.+. ...+||+.|.+.+++.++..++.++  ++.|+.    ++.          
T Consensus       127 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~----~~~----------  190 (394)
T PRK03699        127 KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPAL----GKH----------  190 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccc----ccc----------
Confidence            999999999988899998888887 5554 4579999999888877765433321  222210    000          


Q ss_pred             HhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-ccCCchHHHHHH--
Q 040646          271 STSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLYLSVT--  347 (509)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~--  347 (509)
                         ++     ++      +++. .       ++.+ ++..+...+..++............|.++ +..|.+......  
T Consensus       191 ---~~-----~~------~~~~-~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~  247 (394)
T PRK03699        191 ---AP-----KA------DKPV-A-------KEKW-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLV  247 (394)
T ss_pred             ---Cc-----cc------cCcc-c-------cccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHH
Confidence               00     00      0000 0       0001 12222222222222223333334456555 456777655433  


Q ss_pred             -HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch
Q 040646          348 -FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT  426 (509)
Q Consensus       348 -~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  426 (509)
                       ...++.+++.++.++++||+++|+.+.....+..+...++....  +........++.++..+..++...++..|..|.
T Consensus       248 ~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  325 (394)
T PRK03699        248 SNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD--DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV  325 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence             34467889999999999999999988877666555544443322  222222233334444455566666667776664


Q ss_pred             hhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhcc
Q 040646          427 CVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       427 ~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (509)
                      + ++...+.......+|..++|.+.+..  ..+....+...+++.+++.+..+..+
T Consensus       326 ~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        326 A-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             C-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            3 56778888888899999999998832  23444555555555555544444443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=2.1e-30  Score=250.12  Aligned_cols=325  Identities=21%  Similarity=0.286  Sum_probs=237.6

Q ss_pred             Cc-ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           92 HT-SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        92 ~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      .| .+.+++|.   +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++..+++|++.+++.|++
T Consensus        19 ~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (352)
T PF07690_consen   19 LPLYLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFL   94 (352)
T ss_dssp             HH-HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccc
Confidence            56 78899999   55589999999999999999999999999 999999999999999997777777888899999999


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      .|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.++ .+.+..+||+.|++.+++.++..++...++++
T Consensus        95 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen   95 LGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             cccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence            99999999999999999999999999999999999999999999995 55567899999999999998876654455655


Q ss_pred             chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchh-HHHHHHhchHHHHHHHHHHHHHHHHhHhh
Q 040646          250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYS-AIKILVEKKWALRRLSAIMVTGFGIGMVY  328 (509)
Q Consensus       250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  328 (509)
                      +|+.     +.++           ++   .+++         .+++++.. .++.+++++..+......+...+......
T Consensus       175 ~~~~-----~~~~-----------~~---~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (352)
T PF07690_consen  175 PPPP-----RERE-----------SP---KESE---------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFS  226 (352)
T ss_dssp             -STT-----TT-------------SS---TTTT-----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccc-----cccc-----------cc---cccc---------cccccccccccccccccchhhhhhhhhhHHHHHHHHhh
Confidence            4321     0000           00   0000         00011111 24556666654423333333333444444


Q ss_pred             hccccc-cccCCch-HHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHH
Q 040646          329 YGMPLG-LGSLSFN-LYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI-WTSVEIGLE  402 (509)
Q Consensus       329 ~~~~~~-~~~~g~~-~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  402 (509)
                      ...|.+ .+..+.+ .....   .+..+..+++.++.+++.||+++|+..........+..+.+...... +........
T Consensus       227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (352)
T PF07690_consen  227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIAL  306 (352)
T ss_dssp             HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHH
T ss_pred             cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            555554 5556666 44444   44456667778999999999999887777666666665555443222 223333334


Q ss_pred             HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHH
Q 040646          403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSP  448 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p  448 (509)
                      ++.+++.+...+....+..|..|+++++++.|+.+....+|..++|
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4455566677888999999999999999999999999999999988

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.7e-29  Score=244.00  Aligned_cols=360  Identities=17%  Similarity=0.179  Sum_probs=262.2

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhh
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--MWIYSVLRFINGF  173 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~  173 (509)
                      ..+|++   ++.+.+++.++++.|+.+++++.|+++|| +|-|+++..+.++.++++++..++.+  ++.+++.|+++|+
T Consensus        65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL  140 (466)
T ss_pred             CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence            678999   44588999999999999999999999999 99999999999999999999998764  5688999999999


Q ss_pred             ccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-SSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       174 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      +.|..+|....+.++|.|++||++..++..++..+|.+++.++ |++.+. .||+.+|++.++.+++..++..++..|+|
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P  220 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP  220 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999999999998877 677777 89999999999999998888778888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcc
Q 040646          252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGM  331 (509)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (509)
                      ..   ++..  ..++++++.+...              ++..+++...+++++++++.+|...+..+....+......+.
T Consensus       221 ~~---h~~i--s~~El~~I~~~k~--------------~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~  281 (466)
T KOG2532|consen  221 SK---HPNI--SEKELKYIEKGKS--------------EAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL  281 (466)
T ss_pred             cc---CCCC--CHHHHHHHHhccc--------------ccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            52   1111  1122223322111              000111145689999999987776666665555555555555


Q ss_pred             ccccc-cCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCc---------hhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646          332 PLGLG-SLSFNLYLSVTFNA---LSELPASLITFFLIGKLKR---------KSSLLGFTIMSGVCSVLCVVMGKIWTSVE  398 (509)
Q Consensus       332 ~~~~~-~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (509)
                      |.|++ .++++....+.+.+   +...+..+++|.++||+.+         |..-.++....+++++.+.+.+.......
T Consensus       282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a  361 (466)
T KOG2532|consen  282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA  361 (466)
T ss_pred             hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH
Confidence            66665 47887666655544   6777888899999998755         22334566666666666666655444333


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc-c----cchhHHHHHHHHHHHHH
Q 040646          399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR-Q----NNFLSYGIFGLVIGLCG  473 (509)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~-~----~~~~~~~~~~~~~~~~~  473 (509)
                      +.+..+.....+...+....-..+. .+++.+..+|+.+....+.++++|.+.+... .    .+...|.+.+++.+++.
T Consensus       362 ~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~  440 (466)
T KOG2532|consen  362 VILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGN  440 (466)
T ss_pred             HHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3333332222222222222222232 4577899999999999999999999998332 2    34456777777777776


Q ss_pred             HHHhhc
Q 040646          474 LFVIGL  479 (509)
Q Consensus       474 ~~~~~~  479 (509)
                      +++.+.
T Consensus       441 i~f~~f  446 (466)
T KOG2532|consen  441 IIFLFF  446 (466)
T ss_pred             hheeEe
Confidence            655444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=9.6e-30  Score=248.07  Aligned_cols=342  Identities=18%  Similarity=0.156  Sum_probs=236.1

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      .|.+.+++|+   +..+.|++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|++.
T Consensus        18 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (379)
T TIGR00881        18 MPYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALN   93 (379)
T ss_pred             hHHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            7899999999   44589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHH-H-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPA-I-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~-~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      |++.+...+...+++.|++|+++|++++++.+.+..+|..+++. + +.+....+||+.|++.+++.++..+...++.||
T Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T TIGR00881        94 GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD  173 (379)
T ss_pred             HhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence            99999999999999999999999999999999999999999994 5 455667899999999888887766677778888


Q ss_pred             chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646          250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY  329 (509)
Q Consensus       250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  329 (509)
                      +|+..   +..++           ++  ...++.++.+.+++++.+......+++++++..+...+..++..........
T Consensus       174 ~~~~~---~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (379)
T TIGR00881       174 SPQSC---GLPPA-----------EE--MPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILD  237 (379)
T ss_pred             Ccccc---ccCcc-----------cc--CcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            76411   00000           00  0000000000001111112223456677888766555555544444443333


Q ss_pred             cccccc-ccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCc-hhHHHH-HHHH-HHHHHHHHHHhccchhHHHHHHH
Q 040646          330 GMPLGL-GSLSFNLYLS---VTFNALSELPASLITFFLIGKLKR-KSSLLG-FTIM-SGVCSVLCVVMGKIWTSVEIGLE  402 (509)
Q Consensus       330 ~~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr-~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~  402 (509)
                      ..|.+. +..+.+....   .....++.+++.++.+++.||..+ |+.... .... ..++...................
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL  317 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence            444444 4456654433   344557788999999999998643 332222 1111 11221222121122222222222


Q ss_pred             HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      +..++......+....+..|..|++.|+++.|+.+....+|+.++|.+.+.
T Consensus       318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~  368 (379)
T TIGR00881       318 FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGY  368 (379)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence            222222333344556788999999999999999999999999999998873

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=1.4e-28  Score=239.50  Aligned_cols=331  Identities=14%  Similarity=0.136  Sum_probs=228.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+.+|+|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++
T Consensus        29 lp~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  104 (381)
T PRK03633         29 VPLWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVA  104 (381)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            7899999999   45589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+.....+.+..++++|+++++++..+.++|..+++.++. +.....|+.. +..+..............+++
T Consensus       105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  183 (381)
T PRK03633        105 GIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLP-WVTGLVLAAILPLLFTRILNQ  183 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH-HHHHHHHHHHHHHHHhcccCC
Confidence            99999988888777888899999999999999999999999999954 4333223332 222222222111111111111


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      +      .                +               ++    +..+.++.+++|.++......+.........+..
T Consensus       184 ~------~----------------~---------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (381)
T PRK03633        184 Q------A----------------E---------------NH----DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGL  222 (381)
T ss_pred             C------C----------------C---------------CC----CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            0      0                0               00    0012455667766543332233333333334445


Q ss_pred             cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      +|.+.++.|.+.....   ....++.+++.+..+++.||+++|+.+..+..+..++.+.+.  ..  ....... .+.+.
T Consensus       223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~--~~~~~~~-~l~g~  297 (381)
T PRK03633        223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ--AAMAPAL-FILGA  297 (381)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh--HHHHHHH-HHHHH
Confidence            6777777777655443   344467788999999999999999988877766666554332  11  1111122 22223


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHH
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCG  473 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~  473 (509)
                      +....++...+...|..|+++++...+..+....+|..++|.+.+..  ..+....+.+.+.+.++..
T Consensus       298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            33345677778888999988888888888888899999999998833  3344455566555555443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=3.4e-29  Score=242.92  Aligned_cols=326  Identities=13%  Similarity=0.049  Sum_probs=242.6

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-----HHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-----NMWIYSV  166 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-----~~~~l~~  166 (509)
                      +|.+..|++.   +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++..+.+     +++.+++
T Consensus        22 ~~~~~~~~~~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (365)
T TIGR00900        22 LPLYVLAGTG---SASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYV   97 (365)
T ss_pred             HHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            4566667777   55589999999999999999999999999 9999999999999999999988888     9999999


Q ss_pred             HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646          167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF  245 (509)
Q Consensus       167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  245 (509)
                      .|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+ +.+.+..+||+.|++.++..++..+....
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999 56667789999999887766654433322


Q ss_pred             e-ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646          246 L-VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI  324 (509)
Q Consensus       246 ~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  324 (509)
                      . .||.++    +++.+..+                           +..++....++.++++|..+......++.....
T Consensus       178 ~~~~~~~~----~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (365)
T TIGR00900       178 VRIPELAA----SEIQALSN---------------------------AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVF  226 (365)
T ss_pred             cccccCCC----ccccccch---------------------------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            2 232211    00000000                           000011224566778887665555555444444


Q ss_pred             hHhh-hcccccccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646          325 GMVY-YGMPLGLGS-LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI  399 (509)
Q Consensus       325 ~~~~-~~~~~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (509)
                      .... ...|++.++ .+.+....   .....++.+++.++.+++.||.+||+.+..+..+.+++...+.+... +.+...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  305 (365)
T TIGR00900       227 APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-NFPLFL  305 (365)
T ss_pred             HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHH
Confidence            3333 455666654 56654433   34445777888999999999999999888777666666665555332 233333


Q ss_pred             HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      ...++.+++.+...+...++..|..|++.|+++.|+.+....++..++|.+.+.
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~  359 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP  359 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555666667788899999999999999999999999999999998873

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=2.5e-29  Score=247.87  Aligned_cols=361  Identities=15%  Similarity=0.054  Sum_probs=250.0

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-----HhHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-----STNMWIYSV  166 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~  166 (509)
                      .|.+.++++.   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+..+.     .++++.+++
T Consensus        40 ~~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  115 (417)
T PRK10489         40 VPVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYL  115 (417)
T ss_pred             HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            4666677776   55589999999999999999999999999 99999999988887777665543     467899999


Q ss_pred             HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646          167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF  245 (509)
Q Consensus       167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  245 (509)
                      .|++.|++.+...+...+++.|++|+++|+++.++......+|..++|.+ +.+.+..+|++.|++.++..++.. +..+
T Consensus       116 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~  194 (417)
T PRK10489        116 LGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-LPLL  194 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHH
Confidence            99999999888888889999999999999999999999999999999998 466666789999988777766644 3445


Q ss_pred             eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh
Q 040646          246 LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG  325 (509)
Q Consensus       246 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (509)
                      .+||+++.   +.+.++                              ..++....++.++++|.++...+..+..... .
T Consensus       195 ~l~~~~~~---~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (417)
T PRK10489        195 RLPALPPP---PQPREH------------------------------PLRSLLAGFRFLLASPVVGGIALLGGLLTMA-S  240 (417)
T ss_pred             hCCCCCCC---Cccccc------------------------------chHHHHHHHHHHHcChHHHHHHHHHHHHHHH-H
Confidence            66765321   000000                              0001112345566777654444333332222 2


Q ss_pred             Hhhhcccccccc-CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 040646          326 MVYYGMPLGLGS-LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGL  401 (509)
Q Consensus       326 ~~~~~~~~~~~~-~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (509)
                      ......|.+.++ .|.+.....   ...+++.+++.++.+++.||.++++.+..+.++.+++.+.+...  ++.......
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~  318 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLC  318 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHH
Confidence            223334555555 676654443   34457788889999999999777777777766666665554442  222222233


Q ss_pred             HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHH-HHHHHhh
Q 040646          402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGL-CGLFVIG  478 (509)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~  478 (509)
                      .++.+++.+...+...++..|..|++.|++++|+.+....+|..++|.+.+...  .+....+.+.+++.++ +.+....
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            333334444444566788899999999999999999999999999999988332  2334445555544444 3444466


Q ss_pred             ccCCCCCCCcccHHH
Q 040646          479 LPETRDTQLSDTMDE  493 (509)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (509)
                      +++.|+++.+|.+++
T Consensus       399 ~~~~~~~~~~~~~~~  413 (417)
T PRK10489        399 LGELRRFRQTPPEVD  413 (417)
T ss_pred             cccccccccccccCC
Confidence            688777776665443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.4e-31  Score=244.40  Aligned_cols=359  Identities=17%  Similarity=0.214  Sum_probs=252.3

Q ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646           31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG  110 (509)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  110 (509)
                      ++..++.+.++++..+++..|...+..+                                 .+.+++.||++   ....|
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv---------------------------------~~~v~~~fni~---~s~~G   71 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGV---------------------------------LKEVQTYFNIS---DSELG   71 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhh---------------------------------hHHHHHhcCCC---chhcc
Confidence            3567788889999999999999888775                                 89999999994   44789


Q ss_pred             hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646          111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV  190 (509)
Q Consensus       111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~  190 (509)
                      ++.+.+.+.+.+++|++|+++|| |+||+++.+|..+|.++.++++++..||+++++|.+.|+|.+...++++++++|.+
T Consensus        72 ll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f  150 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF  150 (493)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc-chHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH
Q 040646          191 GKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS-WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK  268 (509)
Q Consensus       191 ~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~  268 (509)
                      |..+|++.+++++.+.++|..+|.+.+ .+....+ |||.|+..+++.++.+++..++.+|+++     +..++.     
T Consensus       151 ~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~-----  220 (493)
T KOG1330|consen  151 PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV-----  220 (493)
T ss_pred             cchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccc-----
Confidence            999999999999999999999988885 3434333 9999999999999999999899998753     111110     


Q ss_pred             HHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccc----ccccCCch---
Q 040646          269 SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPL----GLGSLSFN---  341 (509)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~---  341 (509)
                           ++      +.     +...+......+.+.+.+++.+....+......+..+...|..|.    ..+-.+++   
T Consensus       221 -----~~------~~-----~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~  284 (493)
T KOG1330|consen  221 -----DG------EN-----KMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNA  284 (493)
T ss_pred             -----cc------CC-----cCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcccc
Confidence                 00      00     001111122334555566565544444444444433333333222    11222222   


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHhhhcCch----hHHHH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 040646          342 LYLSVTFNALSELPASLITFFLIGKLKRK----SSLLG-------FTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSAC  410 (509)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (509)
                      ....+.++..++.+|.+++|.++||+.|+    .....       +..+.+....+.........+..+++++++.....
T Consensus       285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~  364 (493)
T KOG1330|consen  285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW  364 (493)
T ss_pred             chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            23345566688889999999999995321    11111       11122222222222223233333333444434444


Q ss_pred             HHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHH
Q 040646          411 TAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVA  452 (509)
Q Consensus       411 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~  452 (509)
                      ..++....+..|+.|++.|.++.++...+. .+|.+-+|.+.|
T Consensus       365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG  407 (493)
T KOG1330|consen  365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG  407 (493)
T ss_pred             cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence            445566678889999999999999988766 556556665555

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=8.6e-29  Score=241.13  Aligned_cols=328  Identities=17%  Similarity=0.164  Sum_probs=230.7

Q ss_pred             CCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040646           89 LQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR  168 (509)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  168 (509)
                      .|.+|.+.+++|+   +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|
T Consensus        11 ~p~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   86 (377)
T PRK11102         11 LPALPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQTIDQLIYMR   86 (377)
T ss_pred             hccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            4568999999999   45589999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      ++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+ +.+.+..+||+.|++.+++.++..+...+++
T Consensus        87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (377)
T PRK11102         87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI  166 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999998 4666778999999998888777665666667


Q ss_pred             cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646          248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV  327 (509)
Q Consensus       248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (509)
                      ||+++.    +++++                             .+.++...++++.++++..+...+...+...+....
T Consensus       167 ~~~~~~----~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (377)
T PRK11102        167 PETLPK----ERRQP-----------------------------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF  213 (377)
T ss_pred             CccCcc----cccCC-----------------------------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            775320    00000                             000011124566777776554444333333333222


Q ss_pred             hhccc-cccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc--cchhHHHHHH
Q 040646          328 YYGMP-LGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG--KIWTSVEIGL  401 (509)
Q Consensus       328 ~~~~~-~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  401 (509)
                      ....| ++.+..|.+.....   ....+..+++.++.+++.||+|||+.+..+..+..+..+.+....  ....+.....
T Consensus       214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVG  293 (377)
T ss_pred             HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            22233 33444566655443   344577788899999999999999988877765444333322211  1111211111


Q ss_pred             HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHHhh
Q 040646          402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVAAG  454 (509)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~~~  454 (509)
                      ..+.........+.......|..| +.++++.++.+... .+|..+++.+....
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~  346 (377)
T PRK11102        294 VAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAP  346 (377)
T ss_pred             HHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            112222222333344556677776 77899999877664 56777777776533

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=4.4e-28  Score=237.17  Aligned_cols=336  Identities=15%  Similarity=0.098  Sum_probs=227.8

Q ss_pred             Ccc-eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH--------HhHHH
Q 040646           92 HTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF--------STNMW  162 (509)
Q Consensus        92 ~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~--------~~~~~  162 (509)
                      +|. +++|+|+   +..+.|++.+++.+++.++++++|+++|| +|||++++.+.+...++.+....        .++++
T Consensus        38 l~~~l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
T PRK12382         38 IPLFVHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFA  113 (392)
T ss_pred             hhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence            454 6789999   55689999999999999999999999999 99999999998887776553322        36889


Q ss_pred             HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHH
Q 040646          163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCI  241 (509)
Q Consensus       163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~  241 (509)
                      .+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|+++ .+....|||..+.+..+..++.. 
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~-  192 (392)
T PRK12382        114 LLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW-  192 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-
Confidence            9999999999999998888889999999999999999999999999999999994 66677899988776555443322 


Q ss_pred             HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646          242 LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG  321 (509)
Q Consensus       242 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  321 (509)
                      ......||.++      +++                               ++    .+.++.++.  .+.......+..
T Consensus       193 ~~~~~~~~~~~------~~~-------------------------------~~----~~~~~~~~~--~~~~~~~~~l~~  229 (392)
T PRK12382        193 AFNGTVRKVPA------HAG-------------------------------ER----PSLWSVVGL--IWKPGLGLALQG  229 (392)
T ss_pred             HHHHhccCCCC------Ccc-------------------------------cC----chHHHHHHH--HHHhHHHHHHHH
Confidence            11122222210      000                               00    011111111  011111111111


Q ss_pred             HHHhHhhhccccccccCCchH-HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646          322 FGIGMVYYGMPLGLGSLSFNL-YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG  400 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (509)
                      ..........+.++++.+.+. .......+++.+++.++.+++.||+|+|+.+..+..+.+++.+++...+  +......
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  307 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALA  307 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHH
Confidence            222222222233344444432 2233344566788899999999999999998888777777766555532  2223333


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHh
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ..++.+++.+...+.......|.+|+++|+++.|+.+....+|..++|.+.+.  ...++...+.+.+++.+++.++.+
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            33344455555566667778889999999999999999999999999998883  233455566666666665555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=3.4e-28  Score=238.39  Aligned_cols=343  Identities=13%  Similarity=0.111  Sum_probs=226.0

Q ss_pred             CCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040646           89 LQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR  168 (509)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  168 (509)
                      .|.+|.+.++++.   +..+.++..+++.+++.++++++|+++|| +|||++++.+.++++++++++++++|++.++++|
T Consensus        36 ~p~l~~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r  111 (413)
T PRK15403         36 QPGIINVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTTSMTQFLIAR  111 (413)
T ss_pred             ccCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3458899999999   44578999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      +++|++.+...+....++.|++|+++|++++++...+..+|..++|.++ .+.+..|||+.|++.++..++..+..++.+
T Consensus       112 ~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~l  191 (413)
T PRK15403        112 FIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAM  191 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998877777778899999999999999999999999999999995 566677999999999888777655555667


Q ss_pred             cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646          248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV  327 (509)
Q Consensus       248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (509)
                      ||+++.   +++..                               ..+....++++++++|.++...+...+........
T Consensus       192 p~~~~~---~~~~~-------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  237 (413)
T PRK15403        192 PETVKR---GAVPF-------------------------------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSW  237 (413)
T ss_pred             CCCccc---cCCCC-------------------------------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            886420   00000                               00011234677888888776655555544444444


Q ss_pred             hhcccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH---hccchhHHHHH
Q 040646          328 YYGMPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV---MGKIWTSVEIG  400 (509)
Q Consensus       328 ~~~~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  400 (509)
                      ....|.++++ .|.+.......   ...+.+++..+.+.+.++..+++.......+..++..++..   ...+.......
T Consensus       238 ~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~  317 (413)
T PRK15403        238 VAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVL  317 (413)
T ss_pred             HHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            4455666655 46766554433   23455566666666554444433332222222222222211   11222211222


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHHHHHH
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFGLVIG  470 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~~~~~  470 (509)
                      ...+..++.+...+......-... +..+|++.++.+.....+..+++...+.. ..+....+...+++..
T Consensus       318 ~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  387 (413)
T PRK15403        318 GTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            233333444445455442222111 12368888888887777766766666632 2334444444444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=2.7e-28  Score=237.51  Aligned_cols=340  Identities=17%  Similarity=0.157  Sum_probs=234.0

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFL-SCLMMSVSCLLTIFSTNMWIYSVLRFINGF  173 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~-~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  173 (509)
                      +++++|.   +..+.|++.+.+.++..+.+++.|+++|| +||||.++. +.++..++.++++++++++.+++.|++.|.
T Consensus        24 l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~   99 (375)
T TIGR00899        24 LSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSS   99 (375)
T ss_pred             HHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            6788999   45589999999999999999999999999 999887654 566667778888999999999999999998


Q ss_pred             ccchhhhhheeeeEeeccCcccchh--hhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          174 GRATIGTCAIVLSTELVGKKRRGQV--GSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       174 ~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      +.+...|...+++.|+.|+++|++.  .+....+.++|.+++|.+ +.+.+..+||+.|++.+++.++..+..++++||+
T Consensus       100 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  179 (375)
T TIGR00899       100 FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSY  179 (375)
T ss_pred             hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            8888888888888898887777654  577888889999999998 5666778999999999888777666666668886


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      |+..    + ++           .+                      ..+.++.++++..+......++.+.........
T Consensus       180 ~~~~----~-~~-----------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (375)
T TIGR00899       180 PRGA----P-GA-----------LT----------------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIIN  221 (375)
T ss_pred             ccCc----c-cc-----------cC----------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhh
Confidence            5310    0 00           00                      001223445555443333333333333333333


Q ss_pred             ccccc-ccCCchHHHHHHHH---HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          331 MPLGL-GSLSFNLYLSVTFN---ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       331 ~~~~~-~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      .|.+. ++.|.+......+.   ....+++.++.+++.||+|||+.+..+.++..+....+...  ++.+......++.+
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g  299 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNA  299 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            34443 45666655444333   24456677889999999999998877666555444333332  22333333333444


Q ss_pred             HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhc
Q 040646          407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      ++.+...+....+..|..|++ ++++.++.+....+|..++|.+.+..  ..+....+.+.+++.+++.++..++
T Consensus       300 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            445555666777888888865 56999999999999999999998832  2344555666666666665555444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=8.9e-28  Score=236.55  Aligned_cols=347  Identities=11%  Similarity=0.077  Sum_probs=242.6

Q ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646           31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG  110 (509)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  110 (509)
                      ++.....+.++.+..+..+++.......                                 .|.+++++|+   +..+.|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~p~i~~~~~~---s~~~~g   64 (438)
T PRK10133         21 SRSYIIPFALLCSLFFLWAVANNLNDIL---------------------------------LPQFQQAFTL---TNFQAG   64 (438)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCC---CHHHHH
Confidence            3445555666667777777777766665                                 8999999999   455899


Q ss_pred             hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646          111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT---IFSTNMWIYSVLRFINGFGRATIGTCAIVLST  187 (509)
Q Consensus       111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  187 (509)
                      ++.+.+.+++.+++++.|+++|| +|||+++..+.++++++++++   .++++++.++++|+++|+|.|...+....++.
T Consensus        65 l~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~  143 (438)
T PRK10133         65 LIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT  143 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999 999999999999999999886   46789999999999999999999999999999


Q ss_pred             eeccCcccchhhhhhHHHHHHHHHHHHHHH-HHh-cC-------------------------CcchHHHHHHH-hhHHHH
Q 040646          188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YIN-RG-------------------------SSWRRIYLYTS-IPTILY  239 (509)
Q Consensus       188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~-~~-------------------------~~wr~~f~~~~-~~~~~~  239 (509)
                      |+.++++|.+.+++.+..+.+|..+++.++ .+. ..                         .+||++|+... +..++.
T Consensus       144 ~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~  223 (438)
T PRK10133        144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA  223 (438)
T ss_pred             HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987777777789999999999999999884 222 00                         24666665433 333332


Q ss_pred             HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH
Q 040646          240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV  319 (509)
Q Consensus       240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  319 (509)
                      .+......||.|.     ++.+                             +++..+...+.++++++|.++...+..++
T Consensus       224 ~~~~~~~~p~~~~-----~~~~-----------------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~  269 (438)
T PRK10133        224 LLIMLTKFPALQS-----DNHS-----------------------------DAKQGSFSASLSRLARIRHWRWAVLAQFC  269 (438)
T ss_pred             HHHHHhcCCCCCc-----cccc-----------------------------cccccchhhhHHHHHhCchHHHHHHHHHH
Confidence            2222333443211     0000                             00000111235678888876654444433


Q ss_pred             HHHHHhHhhhccc-cccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646          320 TGFGIGMVYYGMP-LGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW  394 (509)
Q Consensus       320 ~~~~~~~~~~~~~-~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~  394 (509)
                      ........+.+.+ +..+ ..|.++....   ....++.++|+++++++.||+++|+++..+..+..+.+.+..+.+.  
T Consensus       270 ~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--  347 (438)
T PRK10133        270 YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--  347 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence            3333332222333 3333 4677765544   5556888899999999999999999988887776665555444332  


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .. ......+.+++.+..+|...+...+..|++ .+++.++..+ ..+|+.++|.+.+.
T Consensus       348 ~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~  403 (438)
T PRK10133        348 HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGF  403 (438)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHH
Confidence            22 233345566777888899999999998764 5677777753 45677788877773

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=1e-27  Score=235.29  Aligned_cols=318  Identities=16%  Similarity=0.142  Sum_probs=228.9

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+++++|+   +..+.+++.+++.+++.++++++|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus        29 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  104 (401)
T PRK11043         29 FKAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQ  104 (401)
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            6788999999   45589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|+++++++++..+.......+|..++|.+ +++.+..+||+.|++.++..++..+.. ++++|+
T Consensus       105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  183 (401)
T PRK11043        105 AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT-LRLKPS  183 (401)
T ss_pred             HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH-HHcCCC
Confidence            999888888888899999999999999999888889999999998 577777899999999888877755443 344443


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      ++     +++++                                 ++..+++++++++..+...+...............
T Consensus       184 ~~-----~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (401)
T PRK11043        184 KK-----ARKQS---------------------------------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTG  225 (401)
T ss_pred             CC-----ccccc---------------------------------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence            21     00000                                 01124566777776554433333322222222334


Q ss_pred             cccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCV---VMGKIWTSVEIGLELV  404 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  404 (509)
                      .|.+.++.|.+.......   ..++.++|.++.+++.||+++|+.........+++.+.+.   ....+..........+
T Consensus       226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (401)
T PRK11043        226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV  305 (401)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            566666677776554432   3466778888899999999998876555444444333222   2112222222222333


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .+++.+..++.......+..| ++++++.|+.+.....++..++.+.+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~  353 (401)
T PRK11043        306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA  353 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666766666667776 569999999999888888888887773

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=1.2e-27  Score=234.27  Aligned_cols=323  Identities=14%  Similarity=0.137  Sum_probs=227.0

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+.+++|+   +..+.+++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|++.
T Consensus        31 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  106 (394)
T PRK11652         31 IADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQ  106 (394)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            7889999999   45589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+....+..|.+++++|+++.++...+..+|..++|.+ +.+.+..+||+.|++.++..++..+...+++||+
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (394)
T PRK11652        107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPET  186 (394)
T ss_pred             HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999988888888888999999999999999999999999999998 4666778999999998877776555555667776


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      ++.    .+.++                                 +....+++.+++|.++......+............
T Consensus       187 ~~~----~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (394)
T PRK11652        187 RPA----DARRT---------------------------------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEAC  229 (394)
T ss_pred             Ccc----ccchh---------------------------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHh
Confidence            421    00000                                 01123566777776554444433333333332333


Q ss_pred             ccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHH
Q 040646          331 MPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSG-VCSVLCVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       331 ~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  405 (509)
                      .+.+.++ .|.+......+   ..++.+++.++.+++.||.+++........... +.............+.......+.
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (394)
T PRK11652        230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALF  309 (394)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            3444443 66665544332   335556667777777777763332222221111 111111111112223333333444


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ  456 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~  456 (509)
                      +++.+...+....+..|..| ++++++.++.+....+|..+++.+.+....
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            45556667778888888887 568999999999999999999999885443

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=1.1e-27  Score=234.57  Aligned_cols=350  Identities=11%  Similarity=0.050  Sum_probs=230.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---H-HhHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---F-STNMWIYSVL  167 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~-~~~~~~l~~~  167 (509)
                      +|.+.+|+|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++++++.   + .++++.+++.
T Consensus        36 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  111 (402)
T TIGR00897        36 LSPFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF  111 (402)
T ss_pred             HHHHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence            4556678898   44589999999999999999999999999 9999999999999998877653   3 3578899999


Q ss_pred             HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHH-HHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646          168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGF-LSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF  245 (509)
Q Consensus       168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  245 (509)
                      |++.|++.+...+.....+.+++|+++|++++|+.+.+.++|. +++|++ +++.+..||+..++......++..++..+
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  191 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF  191 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888888888888999999999999999999999996 578888 46777788766555444333332333334


Q ss_pred             eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh
Q 040646          246 LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG  325 (509)
Q Consensus       246 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (509)
                      +.+|.++    +++.++            +                .+.++....++.++++|..+......++......
T Consensus       192 ~~~~~~~----~~~~~~------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (402)
T TIGR00897       192 SNKDIFT----PQHMQT------------R----------------EKFSELGKAATILFTNPNVLLGGMVRIINTIGLF  239 (402)
T ss_pred             ccCCCCC----cccccC------------C----------------cchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            4444321    000000            0                0000111235667888876655444444434433


Q ss_pred             HhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHhc---cchhHHH
Q 040646          326 MVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLL-GFTIMSGVCSVLCVVMG---KIWTSVE  398 (509)
Q Consensus       326 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~  398 (509)
                      ......|.+.++.|.+.....   ....++.+++.++.|+++||++||+.+. .+.+...++...+...+   .+..+..
T Consensus       240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  319 (402)
T TIGR00897       240 GFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA  319 (402)
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence            344455777777787765443   3345778899999999999999888764 23333333322222211   1222222


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHH
Q 040646          399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ....++.+++.....+ ......|..| ++|+++.|+.+....+|+.++|.+.+.  ...+....+.+.+++.+++.+..
T Consensus       320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       320 LIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            2223333333333323 3345566555 589999999999999999999999883  23344556666666666655554


Q ss_pred             hhc
Q 040646          477 IGL  479 (509)
Q Consensus       477 ~~~  479 (509)
                      .++
T Consensus       398 ~~~  400 (402)
T TIGR00897       398 AFI  400 (402)
T ss_pred             HHh
Confidence            443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.96  E-value=7.1e-28  Score=237.35  Aligned_cols=346  Identities=16%  Similarity=0.099  Sum_probs=238.8

Q ss_pred             Ccceeeeeccccccc--cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASS--LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF  169 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  169 (509)
                      +|.+.+|+|++..+.  ...|++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+
T Consensus        37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (408)
T PRK09874         37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRA  115 (408)
T ss_pred             HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            678888888864321  235889999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeec
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVR  248 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  248 (509)
                      +.|++.+ ..+....++.|++|+++|+++.++...+..+|..++|.+ +.+.+..+||+.|++.++..++..+...+++|
T Consensus       116 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        116 LLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999855 567777888999999999999999999999999999998 56667789999999988887776655556666


Q ss_pred             CchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH-HHHHHHHhHh
Q 040646          249 ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI-MVTGFGIGMV  327 (509)
Q Consensus       249 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~  327 (509)
                      |+++.    .++++..+                                ..+..+.++++..+...... ..........
T Consensus       195 ~~~~~----~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (408)
T PRK09874        195 ENFQP----VSKKEMLH--------------------------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSI  238 (408)
T ss_pred             cCccc----ccchhhhH--------------------------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHH
Confidence            65321    00000000                                00122234444433322221 1222221111


Q ss_pred             hhccccccccCCchH-------HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646          328 YYGMPLGLGSLSFNL-------YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG  400 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (509)
                      ....+.+..+.+.+.       .......+++.+++.+..+++.||++||+.+..+..+..++.+......  ..+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  316 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQLGI  316 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHHHHH
Confidence            112233323221111       1122233466677888899999999999998888777666655544432  2233333


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ..++.+++.+...+...+...+..|++.+++.+++.+....+|..++|.+.+..  ..++...+.+.+++.+++.++.+
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            334444555566677777778888999999999999999999999999998833  23455666767766666655543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=2.7e-27  Score=231.62  Aligned_cols=318  Identities=18%  Similarity=0.174  Sum_probs=222.0

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+.+++|.   ++.+.++..+.+.++..+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus        26 lp~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~  101 (392)
T PRK10473         26 LPRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQ  101 (392)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            6899999999   45589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|++|+++|+++.++.+....+|..++|.++ .+.+..+||+.|++.++..++..++....+||+
T Consensus       102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999985 555678999999998888777666666667775


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      ++.     +.++                               +.......++.++++.++.......+...........
T Consensus       182 ~~~-----~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (392)
T PRK10473        182 RPA-----RAPA-------------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNT  225 (392)
T ss_pred             CCc-----ccCC-------------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            320     0000                               0000112345566666554444333332222222222


Q ss_pred             cccc-cccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          331 MPLG-LGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       331 ~~~~-~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      .|.+ .++.|.+....   ....+++.+++.++.+++.||+|||+.+..+..+..++.+.+.......  .......+..
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  303 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHA--VSLFGITLIC  303 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            3333 34556665443   3345577788999999999999999998888877777666655533222  1111122222


Q ss_pred             HHHHHHhHHHHhhcccccchhhh-hhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          407 FSACTAFSLLLIYTLELFPTCVR-NSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r-~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .+.+..++.  ....+..|.+.| +.+.++......+|..+++.+.+.
T Consensus       304 ~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~  349 (392)
T PRK10473        304 AGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAV  349 (392)
T ss_pred             HHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222  222334443333 455555555556777777777763

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=1.4e-27  Score=232.58  Aligned_cols=342  Identities=11%  Similarity=0.041  Sum_probs=228.1

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING  172 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G  172 (509)
                      +.+.+|++.   +..+.+++.+.+.+++.++++++|+++|| +|||++++++.++.+++++++.++++.   ++.|+++|
T Consensus        27 ~~~~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G   99 (393)
T PRK11195         27 IALLKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVG   99 (393)
T ss_pred             HHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            455678887   44578999999999999999999999999 999999999999999999888887764   78899999


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      ++.+...|...+++.|++|+++|++++++.+....+|.++||.++ .+.+ ..|+..+.+.+...++. ++..+.+||+|
T Consensus       100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-PHAEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999995 4444 45777777766554443 34456788865


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcc
Q 040646          252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGM  331 (509)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (509)
                      +..  ++++++.....++                           .....+.++++|..+...+...+.+.......+..
T Consensus       178 ~~~--~~~~~~~~~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (393)
T PRK11195        178 ARR--PGQSWNPIALLRD---------------------------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLV  228 (393)
T ss_pred             ccc--cccCCCHHHHHHH---------------------------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            311  0000000000000                           01124567777776555444444444433444444


Q ss_pred             ccccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          332 PLGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       332 ~~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      +.+.+ .+|.++...+   ...+++.+++.++.+++.||.++++.+..+.. .++....+..  .++.+......++.++
T Consensus       229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~--~~~~~~~~~~~~~~G~  305 (393)
T PRK11195        229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL--QHSLLPAYPLLILIGA  305 (393)
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH--HhHHHHHHHHHHHHHH
Confidence            44433 3566554443   44457788899999999999888887766643 3333323332  2222322233333444


Q ss_pred             HHHHHhHHHHhhcccccchhh-hhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHHHHHHHHHHH
Q 040646          408 SACTAFSLLLIYTLELFPTCV-RNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFGLVIGLCGLF  475 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      +.+...+...+...+..|++. +|++.++.+....++..++..+.+.. ..+....+.+.+...+++..+
T Consensus       306 ~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        306 LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            444444556666777766654 79999999999999998888887733 233333444444433333333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.9e-27  Score=218.12  Aligned_cols=345  Identities=15%  Similarity=0.132  Sum_probs=253.2

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN---MWIYSVLR  168 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~---~~~l~~~r  168 (509)
                      .+.|.+||++   ++.|.+++.++..+...+..++.|.+.|| ||.|++..+++++..+.++..+++.+   ++++++.+
T Consensus        37 ~~~i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g  112 (417)
T COG2223          37 GVFIKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG  112 (417)
T ss_pred             HhhhccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence            5778899999   45589999999999999999999999999 99999999999999999999999865   45999999


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc---chHHHHHHHhhHHHHHHHhh
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS---WRRIYLYTSIPTILYCILVR  244 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~---wr~~f~~~~~~~~~~~~~~~  244 (509)
                      ++.|++ |..+.+...++++|+||+++|.++|++. ..++|..+...++ .+....+   ||....+..++.++..+..+
T Consensus       113 ll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~  190 (417)
T COG2223         113 LLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW  190 (417)
T ss_pred             HHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 6689999999999999999999999999 8888877766663 4445556   99999888888888777888


Q ss_pred             eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646          245 FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI  324 (509)
Q Consensus       245 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  324 (509)
                      +...|.|......++.                                    ...+++.+++++..|...+..+..+-+.
T Consensus       191 ~~~~d~p~~r~~~~~~------------------------------------~~~~~~~v~~~~~~W~lsllY~~tFG~F  234 (417)
T COG2223         191 LGMNDVPEHRASVKPQ------------------------------------LPAQLKAVFSNKDTWLLSLLYFATFGGF  234 (417)
T ss_pred             HHhCCChhhhcccccc------------------------------------chhHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            8888776421000000                                    0024667787887776666655544433


Q ss_pred             hHhhhcccc-ccccCCchHHHHHHHH---HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc-----chh
Q 040646          325 GMVYYGMPL-GLGSLSFNLYLSVTFN---ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK-----IWT  395 (509)
Q Consensus       325 ~~~~~~~~~-~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~-----~~~  395 (509)
                      ......+|. +..+++.+...+....   .+.+.+.+.++|+++||+|.++.+......++++.........     ...
T Consensus       235 vgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~  314 (417)
T COG2223         235 VGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF  314 (417)
T ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence            333333444 4455777765554433   3555667788999999999999988888888888777766431     122


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc---cchhHHHHHHHHHHHH
Q 040646          396 SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ---NNFLSYGIFGLVIGLC  472 (509)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~---~~~~~~~~~~~~~~~~  472 (509)
                      ......++..+...+......+.+++..+|. +.|.+.|+....+.+|++.-|...+....   .....+.++..+.+++
T Consensus       315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a  393 (417)
T COG2223         315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVA  393 (417)
T ss_pred             HHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            3333333334444555556677778888876 56889999999999999999998883322   2344556666666666


Q ss_pred             HHHHhhc
Q 040646          473 GLFVIGL  479 (509)
Q Consensus       473 ~~~~~~~  479 (509)
                      .+..+..
T Consensus       394 ~v~~~~~  400 (417)
T COG2223         394 LVLTWAL  400 (417)
T ss_pred             HHHHHHH
Confidence            5554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=1.5e-27  Score=233.96  Aligned_cols=301  Identities=20%  Similarity=0.244  Sum_probs=205.0

Q ss_pred             HHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhccchhhhhheeeeEe
Q 040646          117 FMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       117 ~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      +++..+++++.|+++|| +|||+++..+.++.+++.++++++++++        .+++.|+++|++.+...+....++.|
T Consensus        45 ~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  123 (394)
T TIGR00883        45 FLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE  123 (394)
T ss_pred             HHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence            34445789999999999 9999999999999999999999998875        58899999999999999999999999


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCC
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGR  259 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~  259 (509)
                      ++|+++|++..++...+..+|.++++.++...         ...+||+.|++.+++.++. +.....+||+|++...++ 
T Consensus       124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-  201 (394)
T TIGR00883       124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETPVFEKAQE-  201 (394)
T ss_pred             cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHHHHh-
Confidence            99999999999999999999999998874322         3578999998877766553 344455677653211000 


Q ss_pred             HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchH--HHHHHHHHHHHHHHHhHhhhcccccc-c
Q 040646          260 KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW--ALRRLSAIMVTGFGIGMVYYGMPLGL-G  336 (509)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~  336 (509)
                                    ++                   ++...+.++.++++.  ++......+.............|.+. +
T Consensus       202 --------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (394)
T TIGR00883       202 --------------KH-------------------KKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQ  248 (394)
T ss_pred             --------------cc-------------------ccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          00                   000113455555543  22222222222233333333345554 4


Q ss_pred             cCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHH-HHHH-HhccchhHHHHHHHHHHHHHHHH
Q 040646          337 SLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCS-VLCV-VMGKIWTSVEIGLELVAFFSACT  411 (509)
Q Consensus       337 ~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~  411 (509)
                      +.+.+....   .....+..+++.++.+++.||+|||+.+.....+..+.. ..+. ..............++.+++.+.
T Consensus       249 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  328 (394)
T TIGR00883       249 TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGM  328 (394)
T ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            556554433   344457788888999999999999998775544443332 2222 22222233333333444455556


Q ss_pred             HhHHHHhhcccccchhhhhhHHHHHH-HHHhHhhHHHHHHHHh
Q 040646          412 AFSLLLIYTLELFPTCVRNSAISMVR-QALVFGGVFSPVLVAA  453 (509)
Q Consensus       412 ~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~~~  453 (509)
                      ..+...++..|.+|++.|+++.++.+ ....+|..++|.+.+.
T Consensus       329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~  371 (394)
T TIGR00883       329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA  371 (394)
T ss_pred             HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence            66778899999999999999999854 4456788888888873

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.96  E-value=4.7e-27  Score=229.51  Aligned_cols=314  Identities=11%  Similarity=0.105  Sum_probs=223.3

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF  173 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  173 (509)
                      .+++++|+   +..+.|++.+.+.++..+.+++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++|+
T Consensus        36 ~~~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  111 (400)
T PRK11646         36 RFVDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGL  111 (400)
T ss_pred             HHHHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45678888   55689999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             ccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchH
Q 040646          174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPR  252 (509)
Q Consensus       174 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~  252 (509)
                      +.+...+...+++.|++|+++|++++++......+|..++|.++ .+. +.+||+.|++.++..++..+...+++||.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~  190 (400)
T PRK11646        112 GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL  190 (400)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            99888898999999999999999999999999999999999994 555 7899999999887776655444445554210


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccc
Q 040646          253 WLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMP  332 (509)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (509)
                           .+.+                                 ++...+++++++++.++....................|
T Consensus       191 -----~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  232 (400)
T PRK11646        191 -----STVR---------------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLP  232 (400)
T ss_pred             -----cccc---------------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence                 0000                                 00012356677777654433332222222222233457


Q ss_pred             cccccCCchHHHHHHHH---HhhhhhHHHHHHHHh-hhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 040646          333 LGLGSLSFNLYLSVTFN---ALSELPASLITFFLI-GKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFS  408 (509)
Q Consensus       333 ~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~-dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (509)
                      .+.++.+.++.....+.   ++....+....+++. ||++.++.+..+..+.+++..++...++  .........+.+.+
T Consensus       233 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~~g  310 (400)
T PRK11646        233 IMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--LQQLFTLICLFYIG  310 (400)
T ss_pred             hhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHH
Confidence            77666555544433332   233333333334444 5566666666666666666555544322  22222222333344


Q ss_pred             HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .....+...++..+..|+++|++++|+.+....+|..++|.+.+
T Consensus       311 ~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G  354 (400)
T PRK11646        311 SIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGG  354 (400)
T ss_pred             HHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchH
Confidence            44555677788999999999999999999999999999998887

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.96  E-value=4.8e-27  Score=226.52  Aligned_cols=320  Identities=23%  Similarity=0.338  Sum_probs=250.2

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      .|.+.++++.   +..+.+++.+.+.++..+++++.|+++|| +|||+.+..+.++..++.++..+.++++.+++.|++.
T Consensus        22 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (352)
T cd06174          22 LPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLL   97 (352)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            6777788887   55589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|++|+++|++.+++...+..+|..+++.+ +.+.+..+||+.+++.+++.++..+.. .+++  
T Consensus        98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--  174 (352)
T cd06174          98 GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-LFLL--  174 (352)
T ss_pred             HcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHH--
Confidence            999999999999999999999999999999999999999999999 566677789999999888777654333 2211  


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                                                                               |..+......+............
T Consensus       175 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  197 (352)
T cd06174         175 ---------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTY  197 (352)
T ss_pred             ---------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence                                                                     11122233333333444444444


Q ss_pred             cccccccC-CchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchh-HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646          331 MPLGLGSL-SFNLYL---SVTFNALSELPASLITFFLIGKLKRKS-SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       331 ~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (509)
                      .+.+.++. +.+...   ......++.+++.++.+++.||++||+ .+..+..+..++.+.+.....  .+.......+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~  275 (352)
T cd06174         198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS--LALLLVALLLL  275 (352)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence            44444443 554433   345556888899999999999999999 888888888887777666432  33334444555


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +++.+...+....+..|..|+++|++..|+.+....+|..++|.+.+..  ..+....+.+.+++.+++.+..+
T Consensus       276 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            5666677788899999999999999999999999999999999999843  34555666777776666655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=1.8e-27  Score=230.96  Aligned_cols=323  Identities=14%  Similarity=0.076  Sum_probs=216.8

Q ss_pred             Ccc-eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Q 040646           92 HTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRF  169 (509)
Q Consensus        92 ~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~  169 (509)
                      .|. +++++|+   +..+.+++.+.+.+++.+++++.|+++|| +|||+.+.++.++.+++.+++++++ +++.+++.|+
T Consensus        24 ~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   99 (366)
T TIGR00886        24 AVQMIKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRL   99 (366)
T ss_pred             hhHHHHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            674 8999999   55589999999999999999999999999 9999999999999999999999999 9999999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc----------CCcchHHH-HHHHhhHH
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR----------GSSWRRIY-LYTSIPTI  237 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~----------~~~wr~~f-~~~~~~~~  237 (509)
                      ++|++.+. .+....++.|++|+++|+++.++.....++|..+++.++ .+..          ..+||+.| +..++...
T Consensus       100 ~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       100 FIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            99999654 566788999999999999999999877777766666553 2221          34899999 44455555


Q ss_pred             HHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH
Q 040646          238 LYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI  317 (509)
Q Consensus       238 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  317 (509)
                      +..++...+.+|+|+.     +.++.+         .+.+....          ..+++...+.++.++++..+...+..
T Consensus       179 ~~~~~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (366)
T TIGR00886       179 LPALLIFFVGADTPPG-----KPATGK---------LSFKGARW----------SVGTGALGDQLKVFRDRHTWILALLY  234 (366)
T ss_pred             HHHHHHHHhcccCCcc-----cccchh---------cccccccc----------cccchhHHHHHHHHhccchhhHHHHH
Confidence            5444555666776531     100000         00000000          00001112456677777655544444


Q ss_pred             HHHHHHHhHhhhccccccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc
Q 040646          318 MVTGFGIGMVYYGMPLGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI  393 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~  393 (509)
                      ..............+.+.+ ..+.+.....   .+..+..+++.++++++.||+|+|+.+..+......+..++.+....
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  314 (366)
T TIGR00886       235 SVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS  314 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC
Confidence            4333333333333444443 4566654443   33446778888999999999999887776666555555444443221


Q ss_pred             --hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhh
Q 040646          394 --WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGG  444 (509)
Q Consensus       394 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~  444 (509)
                        ..........+..+..+...+..+.+.++..| ++++++.|+.+....+|+
T Consensus       315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       315 PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence              23222233333334444555667778888887 589999999998887763

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=1.1e-26  Score=226.38  Aligned_cols=334  Identities=12%  Similarity=0.059  Sum_probs=230.3

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING  172 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G  172 (509)
                      +.+++++|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|
T Consensus        32 ~~l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  107 (395)
T PRK10054         32 IYLSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALIN  107 (395)
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            456678999   55589999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchH
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPR  252 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~  252 (509)
                      .+.+...+...++..|..|+++|++++++.....++|.+++|.++..+.+.+||..|++.++..++..+...+++||+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~  187 (395)
T PRK10054        108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEK  187 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888889999999999999999999999999999999999544335789999998887777654444454555421


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccc
Q 040646          253 WLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMP  332 (509)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (509)
                          +++.++ .                                +..+.++.+++|.++......++..+.........+
T Consensus       188 ----~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (395)
T PRK10054        188 ----AIATET-G--------------------------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCIS  230 (395)
T ss_pred             ----ccccch-h--------------------------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHH
Confidence                000000 0                                001134566777665555544443333222211222


Q ss_pred             ccc---ccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          333 LGL---GSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       333 ~~~---~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      .+.   .+.+.+......+   .++.........+++.||.++|+.+..+..+..++...+.... ++.+.......+.+
T Consensus       231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  309 (395)
T PRK10054        231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-NSLLLWGMSAAVFT  309 (395)
T ss_pred             HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHHHHH
Confidence            221   3334443333222   2244445567788999999999998888777777665554422 22222233334444


Q ss_pred             HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHH
Q 040646          407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVI  469 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~  469 (509)
                      ++.....+.....+.+..|++.++++.+..+ ...+|..++|.+.+..  ..+....+.+.+++.
T Consensus       310 ~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~  373 (395)
T PRK10054        310 VGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAI  373 (395)
T ss_pred             HHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence            5555555667778889999999999988654 5668899999988832  223333444444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=2e-26  Score=230.13  Aligned_cols=350  Identities=13%  Similarity=0.120  Sum_probs=232.1

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchHH-HHHHHHHHHHHHHHHHHH---hHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKNM-LFLSCLMMSVSCLLTIFS---TNMW  162 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~  162 (509)
                      +|...++.|.+   ..++|.. +.....+ ++.+++|+++|| +     ||||. +..+.+..+++..++++.   ++++
T Consensus        35 l~~~l~~~g~~---~~~ig~~-~~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~  108 (491)
T PRK11010         35 LQAWMTVENID---LKTIGFF-SLVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLR  108 (491)
T ss_pred             HHHHHHhCCCC---HHHHHHH-HHHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence            56777777773   3356665 3344444 688999999999 9     99885 667777777777777775   4788


Q ss_pred             HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc-CCcchHHHHHHHhhHHHHH
Q 040646          163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR-GSSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~-~~~wr~~f~~~~~~~~~~~  240 (509)
                      .+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++ ++.+ ..|||..|++.++..++..
T Consensus       109 ~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~  188 (491)
T PRK11010        109 WLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCI  188 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998884 5656 4699999999888777654


Q ss_pred             HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646          241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT  320 (509)
Q Consensus       241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  320 (509)
                      +. .+++||+++..   +++++                              .+++...+++++++++..+......++.
T Consensus       189 l~-~~~~~e~~~~~---~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~ll~~~l~  234 (491)
T PRK11010        189 IA-TLLAPEPTDTI---PVPKT------------------------------LEQAVVAPLRDFFGRNNAWLILLLIVLY  234 (491)
T ss_pred             HH-HHhcCCCcccc---ccccc------------------------------hhhhHHHHHHHHHcCcCHHHHHHHHHHH
Confidence            33 34578764210   00000                              0000112466777766655444444333


Q ss_pred             HHHHhHhh-hccccccccCCchHHHHHHHH----HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH--hccc
Q 040646          321 GFGIGMVY-YGMPLGLGSLSFNLYLSVTFN----ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV--MGKI  393 (509)
Q Consensus       321 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~--~~~~  393 (509)
                      .......+ +..+++.+..|.+......+.    .++.++|.+++|+++||+|+|+.+.++.++.++..+.+..  ...+
T Consensus       235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~  314 (491)
T PRK11010        235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK  314 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33333322 334444556787766554432    3577899999999999999988877665554444333221  1112


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHH
Q 040646          394 WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGL  471 (509)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~  471 (509)
                      +........++..+..+...+..+++..+..|++.+++..++.+....+|..+++.+.+.  ...++...|.+.+++.++
T Consensus       315 ~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~  394 (491)
T PRK11010        315 NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP  394 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            222222222222233334445567788888888888999999999889998877777762  223444556666666666


Q ss_pred             HHHHHhhccC
Q 040646          472 CGLFVIGLPE  481 (509)
Q Consensus       472 ~~~~~~~~~~  481 (509)
                      +.+.....++
T Consensus       395 ~l~~~~~~~~  404 (491)
T PRK11010        395 GLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHh
Confidence            6555555544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=6.6e-26  Score=220.54  Aligned_cols=337  Identities=11%  Similarity=-0.006  Sum_probs=238.6

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHH----HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNML----FLSCLMMSVSCLLTIFSTNMWIYSVL  167 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l----~~~~~~~~i~~~~~~~~~~~~~l~~~  167 (509)
                      +|.+.+|+|+   +..+.|++.+++.+...++++++|+++|| +|||...    ..+..+..+  ..+..+++++.+++.
T Consensus        27 l~~~l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~  100 (382)
T TIGR00902        27 FPAWLKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIA  100 (382)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence            6788899999   55689999999999999999999999999 9985433    222222222  244567899999999


Q ss_pred             HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhee
Q 040646          168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      |+++|.+.+...|...++..++  +++|++..+....+.++|.+++|++ +.+.+..|||..|++.++...+ .+.... 
T Consensus       101 ~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~~~~-  176 (382)
T TIGR00902       101 IGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAF-MLIGFL-  176 (382)
T ss_pred             HHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHHHHH-
Confidence            9999999888888888877654  4788999999999999999999998 6788888999999887655333 223222 


Q ss_pred             ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646          247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM  326 (509)
Q Consensus       247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (509)
                      ++|+++    +++.++                             +++.+...+.++++|+|.++...+..++.......
T Consensus       177 ~~~~~~----~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~  223 (382)
T TIGR00902       177 IKPTIP----PKDAIP-----------------------------EDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA  223 (382)
T ss_pred             cCCCCC----CCcccc-----------------------------ccccccchhHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            333211    000000                             00001122467888998877776666666665555


Q ss_pred             hhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646          327 VYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL  403 (509)
Q Consensus       327 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (509)
                      .+...+.+.++.|.+....+.+   ..+..+++.++.+++.||+|+|+.+.++.+...+....+.+  .++.+..+...+
T Consensus       224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~q~  301 (382)
T TIGR00902       224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA--IEAFPLIFLLQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh--HhhHHHHHHHHH
Confidence            5555566667788876555443   34667778888999999999999999998888888777665  333444445556


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHH-HHhHhhHHHHHHHHhhccc-chhHHHHHHHHHHHHHH
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQ-ALVFGGVFSPVLVAAGRQN-NFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~g~~i~p~~~~~~~~~-~~~~~~~~~~~~~~~~~  474 (509)
                      +.++..+...+....++.+. |++++++++++.+. ...+|..++|.+.|...+. ....+...+++.+++.+
T Consensus       302 l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       302 LHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            66666677777788888888 99999999999864 4578888888888833222 23446666666554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=8.1e-26  Score=220.70  Aligned_cols=316  Identities=13%  Similarity=0.067  Sum_probs=226.0

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF---STNMWIYSVLR  168 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~r  168 (509)
                      .|.+++++|+   +..+.|++.+.+++++.+++++.|++.|| +|||+++..+.++++++.+++..   .++++.+++.|
T Consensus        26 ~~~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~  101 (410)
T TIGR00885        26 VPQFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGL  101 (410)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            7899999999   55589999999999999999999999999 99999999999999999988654   35899999999


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC-------------------------
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG-------------------------  222 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~-------------------------  222 (509)
                      ++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|.++ .+...                         
T Consensus       102 ~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (410)
T TIGR00885       102 FILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSD  181 (410)
T ss_pred             HHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999984 33211                         


Q ss_pred             -CcchHHHHHHHhhHHHHHHHhh-eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhH
Q 040646          223 -SSWRRIYLYTSIPTILYCILVR-FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA  300 (509)
Q Consensus       223 -~~wr~~f~~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (509)
                       .+||++|++.+++.++..++.. ...||.++       .++                              ++.+...+
T Consensus       182 ~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-------~~~------------------------------~~~~~~~~  224 (410)
T TIGR00885       182 LASVQTPYMIIGAVVLAVALLIMLTKMPALNH-------SDA------------------------------KQISFSAS  224 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------ccc------------------------------ccccchhh
Confidence             3599999988887776543332 11332110       000                              00000113


Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC--CchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHH
Q 040646          301 IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL--SFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLG  375 (509)
Q Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~  375 (509)
                      .++++++|.++...+..++...........++.+.++.  +.+...   ..........+|+++++++.||+++|+.+.+
T Consensus       225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i  304 (410)
T TIGR00885       225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMA  304 (410)
T ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            45677777766545444443333322333334433332  222221   2222235667899999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          376 FTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      ...+.++..++......  ...... ..+.+++.+..+|..++...+..+++.+..+.++...  .+|+.+.|.+.+.
T Consensus       305 ~~~~~~~~~ll~~~~~~--~~~~~~-l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~  377 (410)
T TIGR00885       305 YAIIGMALCLGSIFAGG--HVGLYC-LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGF  377 (410)
T ss_pred             HHHHHHHHHHHHHHcCC--hHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHH
Confidence            87777777666666333  222233 3444466667779999999999987765545555443  3999999999883

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=2.3e-25  Score=217.62  Aligned_cols=341  Identities=15%  Similarity=0.164  Sum_probs=213.2

Q ss_pred             cceeeeeccccccccccchhHHHHHH-HHHHHHhhhhhccccCCCchHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFM-GCLAGGLILATLADSSLGRKNML-FLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      +.+.+|+|+   +..+.|++.+...+ ++.++.+++|+ +|| +||||.+ ..+.++.+++..+.+++++++.+++.+.+
T Consensus        40 ~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  114 (393)
T PRK15011         40 IFLTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVF  114 (393)
T ss_pred             HHHHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            346788999   55589999776544 66666655566 999 9999875 55666667888888899999988766655


Q ss_pred             HhhccchhhhhheeeeEeeccCccc--chhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRR--GQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      .|...+...+....++.|+.++++|  +...++.+.+.++|.+++|+++ .+.++.|||..|++.++..++..+..++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  194 (393)
T PRK15011        115 LSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFL  194 (393)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhc
Confidence            5555567788888888888776655  3445788889999999999995 666778999999999888877766666778


Q ss_pred             cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646          248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV  327 (509)
Q Consensus       248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (509)
                      ||.|+.     +.++           .+      +.       +.        .++  +++..+.........+......
T Consensus       195 ~~~~~~-----~~~~-----------~~------~~-------~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~  235 (393)
T PRK15011        195 PSMRKE-----LPLA-----------TG------TL-------EA--------PRR--NRRDTLLLFVICTLMWGTNSLY  235 (393)
T ss_pred             CccCCC-----Cccc-----------cc------cc-------cc--------ccc--ccccHHHHHHHHHHHHHHHHHH
Confidence            876420     0000           00      00       00        000  0011111222222222222222


Q ss_pred             hhcccccc-ccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646          328 YYGMPLGL-GSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL  403 (509)
Q Consensus       328 ~~~~~~~~-~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (509)
                      ....|.+. ++.+.+......+   ..+..+++.++.|+++||++||+.+..+.....+....+..  .++.........
T Consensus       236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~  313 (393)
T PRK15011        236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM--AHSPAILLGLQL  313 (393)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHH
Confidence            23345444 4466665544333   33556678899999999999999877665554444333322  222222222223


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHhhcc
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  480 (509)
                      +..+..+...+....+..|..|+ .++++.++.+....+|..++|.+.+...  .+....+.+.+++.+++.+.++..|
T Consensus       314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333334444556677888886 4899999998888999999998888332  2344455555555555555555554

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=5e-26  Score=219.54  Aligned_cols=316  Identities=14%  Similarity=0.064  Sum_probs=222.1

Q ss_pred             CCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646           90 QAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF  169 (509)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  169 (509)
                      |.+|.+++|+|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+++.++.++..++.+.+ .+++++.+++.|+
T Consensus        21 ~~lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        21 PLLPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            568999999999   45589999999999999999999999999 999999999999988888877 7789999999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC--cchHHHHHHHhhHHHHHHHhhee
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS--SWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      +.|++.+...+....++.|+++ ++|++++++++.+..+|..+++.+ +.+.+..  +||+.|.+.++..++.. .  .+
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~-~--~~  171 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL-L--AW  171 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-H--HH
Confidence            9999999888888888889886 689999999999999999999888 4454443  39999887766544322 1  22


Q ss_pred             ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646          247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM  326 (509)
Q Consensus       247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (509)
                      +|+.++      +++            .++              +    ....+.++++++|..+...+...+.......
T Consensus       172 ~~~~~~------~~~------------~~~--------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (355)
T TIGR00896       172 IPQVRR------RVA------------ANQ--------------T----TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYS  215 (355)
T ss_pred             hhhhcc------ccC------------CCC--------------C----CCCCCCchhhcCHhHHHHHHHHHHHHHHHHH
Confidence            343321      000            000              0    0001234566777655444433333333333


Q ss_pred             hhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040646          327 VYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLE  402 (509)
Q Consensus       327 ~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (509)
                      .....|.++++.|.+....   .....++.++++++.+++.||+ +||+.+..+..+.+++.+.+.+.......  . ..
T Consensus       216 ~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~  292 (355)
T TIGR00896       216 LIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW--A-WA  292 (355)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH--H-HH
Confidence            3344566666677765443   3445578889999999999999 45666666666666666555553332221  1 22


Q ss_pred             HHHHHHHHHHhHHHHhhcccc-cchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          403 LVAFFSACTAFSLLLIYTLEL-FPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .+.+++.+..++.......+. .+++.++...++.+....++..++|.+.+.
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566655555444 446677888999888889999999988873

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.9e-26  Score=227.01  Aligned_cols=379  Identities=16%  Similarity=0.161  Sum_probs=268.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR-FI  170 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r-~l  170 (509)
                      .+.++++|+-+   ..+.+|+.++....+.+..|+.+.+.|| ||.|++.+.|.++..++.++.++++++|++++.. ++
T Consensus        69 ~~~~~~~f~~s---~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi  144 (509)
T KOG2504|consen   69 FEELMDYFGSS---SSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVI  144 (509)
T ss_pred             HHHHHHHhCCC---ccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            68999999984   4479999999999999999999999999 9999999999999999999999999999887765 88


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      .|+|.|+.+......+..+++ |+|+.+.|+...+.++|.++-|.+ .++.+.+|||+.+++.+.+.+-..+.....-|.
T Consensus       145 ~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~  223 (509)
T KOG2504|consen  145 GGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL  223 (509)
T ss_pred             hhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999998775 899999999999999998777766 789999999999999988887766555555554


Q ss_pred             chHHHHhcCCHHHHHHHHHHHHhhcC--------Ccccccc------ccCccccccccc--ccchhHH---HHHHhchHH
Q 040646          250 SPRWLFIQGRKEEAVSIIKSISTSEN--------QRSLIMD------FNNVSFEQETWN--VDLYSAI---KILVEKKWA  310 (509)
Q Consensus       250 sp~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~~~~~~~--~~~~~~~---~~l~~~~~~  310 (509)
                      ++...   .+.++..+...+......        .++....      .+..+..++...  ..+....   .++++++.+
T Consensus       224 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~f  300 (509)
T KOG2504|consen  224 SPPKK---PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKF  300 (509)
T ss_pred             CcCCC---chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchH
Confidence            43210   000000000000000000        0000000      000000000000  1111112   578888877


Q ss_pred             HHHHHHHHHHHHHHhHhhhccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchh--HHHHHHHHHHHHHH
Q 040646          311 LRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKS--SLLGFTIMSGVCSV  385 (509)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~--~~~~~~~~~~~~~~  385 (509)
                      +...+...+..++....+..++.+..+.+.+...   ...+.++..++++++.|++.|+...++  ...++.+..+++.+
T Consensus       301 l~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~  380 (509)
T KOG2504|consen  301 LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL  380 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence            7666666677777777777777777788877544   455566889999999999999987433  34455555555554


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHH
Q 040646          386 LCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSY  462 (509)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~  462 (509)
                      .+.+  .......+...++.++..+.........+.|+.+.++-..+.|+...+..++.+++|.+.+..   ..++...+
T Consensus       381 ~~p~--~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f  458 (509)
T KOG2504|consen  381 FLPF--ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF  458 (509)
T ss_pred             HHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence            4444  333455555566666666666666667899999999999999999999999999999999832   22355567


Q ss_pred             HHHHHHHHHHHHHHhhcc
Q 040646          463 GIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~  480 (509)
                      ...++..+++.++.+..+
T Consensus       459 ~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  459 YFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhcChHHHHHHHHHHHhH
Confidence            777777777776665555

>TIGR00889 2A0110 nucleoside transporter

Probab=99.94  E-value=6.3e-25  Score=215.36  Aligned_cols=350  Identities=13%  Similarity=0.017  Sum_probs=224.0

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCc-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGR-KNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      .+.+.+++|+   +..|.|++.+++.++..++++++|.++|| +|| |+++.++.++.+++..+..+.++++.+++.|++
T Consensus        26 ~~~l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  101 (418)
T TIGR00889        26 GSYMSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLA  101 (418)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4566678898   55589999999999999999999999999 965 788888888888888888999999999999999


Q ss_pred             Hhhccchhhhhheeee----E----eeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHH
Q 040646          171 NGFGRATIGTCAIVLS----T----ELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCI  241 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i----~----e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~  241 (509)
                      .|++.+...+...++.    .    |......|.+..|      .+|.+++|.++ .+.....|+ +|++.++..++.. 
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~-  173 (418)
T TIGR00889       102 NSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG-  173 (418)
T ss_pred             HHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH-
Confidence            9998776666554432    1    2233334445544      36777777774 342222354 3555555555544 


Q ss_pred             HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646          242 LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG  321 (509)
Q Consensus       242 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  321 (509)
                      +..+++||+|+-   ++++++.                             .++....+.++++|+|.++..++..++..
T Consensus       174 ~~~~~~~e~~~~---~~~~~~~-----------------------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  221 (418)
T TIGR00889       174 VFALTLPDIPVA---KSTAKMS-----------------------------IKVMLGLDAFILFKNKRMAIFFFFSMLLG  221 (418)
T ss_pred             HHHhcCCCCCCC---ccccccC-----------------------------HHHHhhhhHHHHhcCCCeeeHHHHHHHHH
Confidence            345678887520   0000000                             00000112455777777655555544444


Q ss_pred             HHHhHhhhccccccccCCchH-----------HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh
Q 040646          322 FGIGMVYYGMPLGLGSLSFNL-----------YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM  390 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~  390 (509)
                      ......+...+.+.++.|.++           .....+..+..+++.+..+++.||+|+|+++..+.++.++...++...
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~  301 (418)
T TIGR00889       222 APLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG  301 (418)
T ss_pred             hHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence            333333333344444444322           233444556778889999999999999999999988887776555553


Q ss_pred             ccch--hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHH-HHHhHhhHHHHHHHHhhc--------ccch
Q 040646          391 GKIW--TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVR-QALVFGGVFSPVLVAAGR--------QNNF  459 (509)
Q Consensus       391 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~~~~~--------~~~~  459 (509)
                      ....  ....+...++.+++.+...+....++.|.+|++.|++++|+.+ ....+|..++|.+.+...        .++.
T Consensus       302 ~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~  381 (418)
T TIGR00889       302 DPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ  381 (418)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence            2211  1222223334444444555667788999999999999999997 567889999999888321        1234


Q ss_pred             hHHHHHHHHHHHHHHH-HhhccCCCCC
Q 040646          460 LSYGIFGLVIGLCGLF-VIGLPETRDT  485 (509)
Q Consensus       460 ~~~~~~~~~~~~~~~~-~~~~~~~~~~  485 (509)
                      ..|.+.+++.++.+++ .++++|+++.
T Consensus       382 ~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       382 TMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5566666665555544 3556665443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.94  E-value=2.1e-24  Score=214.63  Aligned_cols=324  Identities=14%  Similarity=0.080  Sum_probs=226.1

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHhH------H
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFSTN------M  161 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~  161 (509)
                      .+.+.+++|+   +..+.|++.++..+..++.+|+.|+++||   |+|| |+.++.+....+++.+++.+.++      .
T Consensus        23 ~~~~~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        23 LFFYTDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            3456677888   55589999999999999999999999998   4787 45677888888888888877653      4


Q ss_pred             HHHHHHHHHHhhccchhhhhheeeeEeec-cCcccchhhhhhHHHHHHHHHHHHHH-HHHh-------cCCcchHHHHHH
Q 040646          162 WIYSVLRFINGFGRATIGTCAIVLSTELV-GKKRRGQVGSIGFFCFTLGFLSLPAI-AYIN-------RGSSWRRIYLYT  232 (509)
Q Consensus       162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-------~~~~wr~~f~~~  232 (509)
                      ..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+ +.+.       +..+||+.+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            67778889999998888888888899987 46899999999988888887666554 2222       246899999999


Q ss_pred             HhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHH
Q 040646          233 SIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALR  312 (509)
Q Consensus       233 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  312 (509)
                      +++.++..+...+.+||+++.     +.++                            ++++.+....+++++++|.++.
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~-----~~~~----------------------------~~~~~~~~~~~~~l~~~~~~~~  226 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSE-----IPKN----------------------------IEKKLSLKQIFKALFKNDQLLI  226 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCC-----CCcc----------------------------cccCCCHHHHHHHHhCCHHHHH
Confidence            988887766666777775310     0000                            0000112235677888888766


Q ss_pred             HHHHHHHHHHHHhHhhhcccccccc-CCch--HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646          313 RLSAIMVTGFGIGMVYYGMPLGLGS-LSFN--LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV  389 (509)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~  389 (509)
                      .....++.+..........+++.+. .+.+  ......+..++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  306 (437)
T TIGR00792       227 LCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF  306 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            5555555554444333333444332 2211  122233445778888999999999999999998888777777666555


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .. ++.+......++.+++.+...+..+++.+|..|       ++.+|.+.|+.+....+|..+++.+.+
T Consensus       307 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g  375 (437)
T TIGR00792       307 AG-SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG  375 (437)
T ss_pred             cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 222333333444555566666777888888765       456789999999999888888888776

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.94  E-value=3e-25  Score=214.33  Aligned_cols=312  Identities=15%  Similarity=0.149  Sum_probs=219.2

Q ss_pred             CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchHH-HHHHHHHHHHHHHHHHHH---hHH
Q 040646           91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKNM-LFLSCLMMSVSCLLTIFS---TNM  161 (509)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~  161 (509)
                      ..|.+.+|+|+   +..+.|+..+. .+...+ .+++|+++|| +     ||||. ++.+.++.++.....++.   .+.
T Consensus        10 ~~~~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr-~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901        10 TLPYWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDT-VYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhc-ccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            47899999999   44588888655 455554 8999999999 7     89886 567777777777777776   466


Q ss_pred             HHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc--------chHHHHHH
Q 040646          162 WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS--------WRRIYLYT  232 (509)
Q Consensus       162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~--------wr~~f~~~  232 (509)
                      +.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++ .+....+        ||..|++.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~  163 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT  163 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence            77778888889988989999999999999999999999999999999999999884 6666667        99999998


Q ss_pred             HhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchH---
Q 040646          233 SIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW---  309 (509)
Q Consensus       233 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---  309 (509)
                      ++..++..+..++..||+++.   +.+.++.                              +++...+++++++++.   
T Consensus       164 ai~~l~~~~~~~~~~~e~~~~---~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~  210 (356)
T TIGR00901       164 ALLILPGLLVTLFLAKEPQED---ASVPKPL------------------------------TQAVLKPIREFFQRKNMIQ  210 (356)
T ss_pred             HHHHHHHHHHHHHhccCCCcc---cccchhH------------------------------HHHHHHHHHHHHHhcCchH
Confidence            887777554444445664220   0000000                              0001124566777664   


Q ss_pred             HHHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHH----hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 040646          310 ALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNA----LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSV  385 (509)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~  385 (509)
                      .+......++..+.........+.+.++.|.+......+..    +..+++.++++++.||+|||+.+..+.++.++...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~  290 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA  290 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444456666667877666543332    45678899999999999999998888777776655


Q ss_pred             HHHHhc-c--------chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHh
Q 040646          386 LCVVMG-K--------IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALV  441 (509)
Q Consensus       386 ~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  441 (509)
                      ++.+.. .        +..+......++..++.+...+...++..|.+|+++|++.+|+.+...+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       291 GFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            544431 1        1223333334444566667778899999999999999999999876653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.94  E-value=9.2e-25  Score=242.66  Aligned_cols=327  Identities=13%  Similarity=0.054  Sum_probs=225.4

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMWIYSVLRFI  170 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l  170 (509)
                      .+..+++.+. +....+++.+++.+++.++++++|+++|| +|||++++++.++.+++.++..   .+++++.+++.|++
T Consensus        35 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  112 (1146)
T PRK08633         35 TLIKAYDGSE-QVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFL  112 (1146)
T ss_pred             HHHHHcCccc-HHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            3334454432 23457999999999999999999999999 9999999998877666655544   45789999999999


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC---------CcchHHHHHHHhhHHHHH
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG---------SSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~---------~~wr~~f~~~~~~~~~~~  240 (509)
                      +|++.+...+...+++.|++|+++|++++++...+..+|.+++++++ ++...         .+|++.+.+..+...++.
T Consensus       113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (1146)
T PRK08633        113 LGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLG  192 (1146)
T ss_pred             HHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999995 44443         235555544444444444


Q ss_pred             HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646          241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT  320 (509)
Q Consensus       241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  320 (509)
                      ++..+.+||+|+....+.+ ++                           ...........++.+++++.++..++...+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~-~~---------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  244 (1146)
T PRK08633        193 LIFAYRLPKVPAAAPEVFD-KK---------------------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYF  244 (1146)
T ss_pred             HHHHhcCcCCCCCCccccc-cc---------------------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            4555667877532100000 00                           0000011123466677777766555555555


Q ss_pred             HHHHhHhhhcccccc-ccCCchHH-HH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchh
Q 040646          321 GFGIGMVYYGMPLGL-GSLSFNLY-LS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWT  395 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~-~~~g~~~~-~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (509)
                      ++........+|.++ +..|.+.. ..   ....+++.+++.++.+++.||+++++.+.++.++.+++.+++.+..  +.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~  322 (1146)
T PRK08633        245 WFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SL  322 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hH
Confidence            444433333344443 44566544 33   3444577788999999999999998888877777776666655533  23


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          396 SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      +..+...++.+++.+...+...+++.+..|++.|++++|+.+++..+|.++++.+.+
T Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        323 ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            333333344445555556677888999999999999999999998888877766655

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.94  E-value=1.2e-24  Score=211.74  Aligned_cols=335  Identities=12%  Similarity=0.003  Sum_probs=223.5

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCch----HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRK----NMLFLSCLMMSVSCLLTIFSTNMWIYSVL  167 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr----~~l~~~~~~~~i~~~~~~~~~~~~~l~~~  167 (509)
                      +|.+.+|+|.   +..+.|++.+++.++..++++++|+++|| +|||    +.+.+...+.  .......++++|.+++.
T Consensus        27 l~~~l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~  100 (382)
T PRK11128         27 WSVWLKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVA  100 (382)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHH
Confidence            6778889999   55689999999999999999999999999 9984    3333222221  22233446889999999


Q ss_pred             HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhee
Q 040646          168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      |++.|++.+...+...+++.++  +++|+++.+....+.++|.+++|++ +.+.+++|||..|++.++..++.. +..+.
T Consensus       101 ~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~  177 (382)
T PRK11128        101 IGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQLL  177 (382)
T ss_pred             HHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHc
Confidence            9999999888888877777766  4678899999999999999999999 467777899999988776544433 33334


Q ss_pred             ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646          247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM  326 (509)
Q Consensus       247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (509)
                      .||.++    +++.+                              ++.++...++++++++|.++......++.......
T Consensus       178 ~~~~~~----~~~~~------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~  223 (382)
T PRK11128        178 RPTIMP----QGESR------------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA  223 (382)
T ss_pred             cCCCCC----ccccc------------------------------cccccccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence            454311    00000                              00000123578889998877666655555554443


Q ss_pred             hhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646          327 VYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL  403 (509)
Q Consensus       327 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (509)
                      .+...+.+.++.|.+......+   ..+..++..++.+++.||+++|+.+..+.+..++..+.+...  ++.+..+...+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Confidence            3334455556677765544433   335666777889999999999999888888777766555442  33343344444


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHH-HhHhhHHHHHHHHhhccc-chhHHHHHHHHHHHH
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQA-LVFGGVFSPVLVAAGRQN-NFLSYGIFGLVIGLC  472 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~i~p~~~~~~~~~-~~~~~~~~~~~~~~~  472 (509)
                      +.++..+...+....+..+. +++++++.++..+.. ..+|..++|.+.|...+. ....+...+++.+++
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~  371 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            55555555556666777776 555678888887643 466778888888833222 223444444444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.94  E-value=2.5e-24  Score=238.19  Aligned_cols=315  Identities=10%  Similarity=-0.028  Sum_probs=220.0

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhe
Q 040646          107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFL---SCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAI  183 (509)
Q Consensus       107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~  183 (509)
                      ...++..+++.++++++++++|+++|| +|||+++..   ..++..+..+.....++++.++++|+++|++.+...|+..
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~  130 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY  130 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence            357889999999999999999999999 999997533   2233333333344458999999999999999999999999


Q ss_pred             eeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHH
Q 040646          184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEE  262 (509)
Q Consensus       184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~  262 (509)
                      +++.+++++++|++++++.+++.++|.++||++ +++....+|++.|...++..++ +++..+++|+++.-   +...+.
T Consensus       131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~  206 (1140)
T PRK06814        131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNA---APDLKI  206 (1140)
T ss_pred             HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCC---CCCCee
Confidence            999999999999999999999999999999999 5777888999999554444444 44555667765320   000000


Q ss_pred             HHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCch
Q 040646          263 AVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFN  341 (509)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~  341 (509)
                      ..                           ...++....++.+.+++.++...+..++.++.........|.++++ +|.+
T Consensus       207 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~  259 (1140)
T PRK06814        207 DR---------------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD  259 (1140)
T ss_pred             cc---------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc
Confidence            00                           0000111246777888887776666666655554444445555544 5666


Q ss_pred             HHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh------------------ccchhHHHHH
Q 040646          342 LYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM------------------GKIWTSVEIG  400 (509)
Q Consensus       342 ~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~  400 (509)
                      ....   ....+++.++|.++.+++.++.++++.+..+.++.+++.+.+.+.                  .....+....
T Consensus       260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (1140)
T PRK06814        260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI  339 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence            5443   344557888999999999988777666555554444444333321                  0122223333


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      ..++.+++.+...+...+++.+..|++.+|+++|+.++...+|..+++++.+.
T Consensus       340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~  392 (1140)
T PRK06814        340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILAL  392 (1140)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555566788899999999999999999999999999999988873

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=8.8e-25  Score=206.38  Aligned_cols=344  Identities=13%  Similarity=0.038  Sum_probs=216.1

Q ss_pred             Ccceeeeeccccccccc-cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLI-KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      .|.+.+|+|++.   .+ .|.+.++++.+|++++++.|.++|| +|.|+++.++.+.+++.+++.+++++++.+.+.|++
T Consensus        49 ~p~L~~elglT~---~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~l  124 (511)
T TIGR00806        49 TPYLLTVLNFTE---ETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVF  124 (511)
T ss_pred             HHHHHHHcCCCH---HHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578889999954   47 9999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH--HhhHHHHHHHhheeec
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYT--SIPTILYCILVRFLVR  248 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~--~~~~~~~~~~~~~~~~  248 (509)
                      .|+++|..+ ....++..|+|+++|+++.++..++..+|.+++++++.++..+|||+.+.+.  .+.+..++++..+++|
T Consensus       125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999 9999999999999999999999999999999999995336678999865443  3344445566678888


Q ss_pred             CchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCccccccccc----ccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646          249 ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWN----VDLYSAIKILVEKKWALRRLSAIMVTGFGI  324 (509)
Q Consensus       249 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  324 (509)
                      ..++-+.-+++.+....    ... +.+...+.+..+.....+...    +.-...+++..+++......+-..+...+.
T Consensus       204 ~~~~sl~f~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~  278 (511)
T TIGR00806       204 RPKRSLFFNRLEDVRGA----LPC-ELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGY  278 (511)
T ss_pred             CCchhhhhccccccccc----ccc-ccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHH
Confidence            65553333322111000    000 000000000000000000000    112334555666666544433333333433


Q ss_pred             hHhhhccccccccC-----CchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646          325 GMVYYGMPLGLGSL-----SFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI  399 (509)
Q Consensus       325 ~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (509)
                      ....++...+-+..     ..| ...-.+..+.+.++.+..|++-.++.+.-.+.++.....-+.+++.....++.+...
T Consensus       279 ~qv~~Y~Q~LW~~v~~~~~~yN-G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y  357 (511)
T TIGR00806       279 YLITYYVHTLWGTLDESLNKYN-GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLY  357 (511)
T ss_pred             HHHHHHHHHHHHHcCCCccccC-CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHH
Confidence            33322221111111     122 112223335555677888888655544333333333222222233332244455555


Q ss_pred             HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH
Q 040646          400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF  446 (509)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i  446 (509)
                      ...++....+....++...-+++....+.-|..+|+++++..+-..+
T Consensus       358 ~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQti  404 (511)
T TIGR00806       358 VTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTI  404 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHh
Confidence            55555555555555666666666677677788899888776554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.93  E-value=9.8e-24  Score=206.86  Aligned_cols=345  Identities=14%  Similarity=0.093  Sum_probs=224.3

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchH-HHHHHHHHHHHHHHHHHHH---hHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKN-MLFLSCLMMSVSCLLTIFS---TNMW  162 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~-~l~~~~~~~~i~~~~~~~~---~~~~  162 (509)
                      +|..-+|-|+   +..++|++..+...  .+..+++|+++|| +     |||| ++.++.++.+++..+.++.   .+++
T Consensus        22 ~~~~l~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~   95 (402)
T PRK11902         22 LQAWMTVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALW   95 (402)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHH
Confidence            6777778899   45589999776665  5889999999999 9     8865 7888888888888887776   3578


Q ss_pred             HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC-CcchHHHHHHHhhHHHHH
Q 040646          163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG-SSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~-~~wr~~f~~~~~~~~~~~  240 (509)
                      .+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++ .+.+. .|||..|++.++..++..
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~  175 (402)
T PRK11902         96 PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA  175 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            8888888888888999999999999999999999999999999999999998884 55554 599999999888776644


Q ss_pred             HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646          241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT  320 (509)
Q Consensus       241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  320 (509)
                      + ..+++||+++.   +++.++.                              +++...++++++++|.++......++.
T Consensus       176 l-~~~~~~e~~~~---~~~~~~~------------------------------~~~~~~~~~~l~~~~~~~~~l~~~~l~  221 (402)
T PRK11902        176 L-TTLWAPEPEVP---ARPPRSL------------------------------GEAVVGPLRDFFSRRGAWALLLLIVLY  221 (402)
T ss_pred             H-HHHhcCCCccc---ccccchh------------------------------HHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            3 34566775431   0000000                              000122467788888766555544444


Q ss_pred             HHHHhHh-hhccccccccCCchHHHHHHHHH----hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH--hccc
Q 040646          321 GFGIGMV-YYGMPLGLGSLSFNLYLSVTFNA----LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV--MGKI  393 (509)
Q Consensus       321 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~--~~~~  393 (509)
                      ....... .+..+++.++.|.+......+..    ++.+++.++++++.||+++|+.+..+..+..+..+.+..  ...+
T Consensus       222 ~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~  301 (402)
T PRK11902        222 KLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK  301 (402)
T ss_pred             HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3332222 23334455667877665554432    346788999999999999999877666665554433322  1112


Q ss_pred             hhHHHHHHH----HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHH
Q 040646          394 WTSVEIGLE----LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGL  467 (509)
Q Consensus       394 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~  467 (509)
                      +.+......    +..++...........++.+.+|.+.++.    .+....+|..+++.+.+  ....++...+.+.++
T Consensus       302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~  377 (402)
T PRK11902        302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVV  377 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            222222222    12233344455667778888888776544    33333444443333333  122344555666666


Q ss_pred             HHHHHHHHHhhcc
Q 040646          468 VIGLCGLFVIGLP  480 (509)
Q Consensus       468 ~~~~~~~~~~~~~  480 (509)
                      +++++.++....+
T Consensus       378 ~~~~~~~~~~~~~  390 (402)
T PRK11902        378 IALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHHHHHh
Confidence            6655555444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.93  E-value=3.4e-24  Score=211.48  Aligned_cols=349  Identities=14%  Similarity=0.018  Sum_probs=205.7

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHH-HHHHHHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMW-IYSVLRF  169 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~-~l~~~r~  169 (509)
                      .+++++|+   +..+.|++.+++.++..+++++.|+++|| +|||++++++..+.+++.....   .++... ......+
T Consensus        36 ~l~~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (420)
T PRK09528         36 WLHDINGL---SGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAI  111 (420)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566888   55589999999999999999999999999 9999999887666554433221   111111 0111222


Q ss_pred             HHhhccchhhhhheeeeEeecc--CcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646          170 INGFGRATIGTCAIVLSTELVG--KKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      +.++..+.........+.++.+  .+++++.++......++|..++|.++..+.+.+|+..|++.++++++..+..+...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        112 VGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccc
Confidence            2233223223322223333333  34667788888888999999999985443346899999998888776554544444


Q ss_pred             cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646          248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV  327 (509)
Q Consensus       248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (509)
                      +|.++.      .+.. +        ++  +            +++++......++.+++|.++...+..+.........
T Consensus       192 ~~~~~~------~~~~-~--------~~--~------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~  242 (420)
T PRK09528        192 PDAPST------AKVA-N--------AL--G------------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF  242 (420)
T ss_pred             ccccch------hhhc-c--------ch--h------------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH
Confidence            443320      0000 0        00  0            0000111223556777776544333332222222111


Q ss_pred             hhcccccc----ccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646          328 YYGMPLGL----GSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG  400 (509)
Q Consensus       328 ~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (509)
                      ....|.+.    .+.+.+..   ....+..+..+++.++.+++.||+|+|+.+..+.++..+...++.+..  +.+..+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~  320 (420)
T PRK09528        243 DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSI  320 (420)
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHH
Confidence            11122222    22233332   233344566778899999999999999998888887777766665533  2333333


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHH-HHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISM-VRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ...+.+.......+....+..|.+|++.+++..+. .+....+|.+++|.+.+..  ..++...+.+.+++.++..++.+
T Consensus       321 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        321 LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            33333344444445556788899999999888765 5667788999999888832  23455566666666655554443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.93  E-value=1e-23  Score=209.55  Aligned_cols=374  Identities=12%  Similarity=0.007  Sum_probs=228.6

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHh
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWI-YSVLRFING  172 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G  172 (509)
                      .+++++|++   ..+.+++.+.+.....+..+++|+++||++||||+++++.+++++++++++++++... ++++|+++|
T Consensus        40 yl~~~lg~~---~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~  116 (489)
T PRK10207         40 FFVKQLGFS---QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA  116 (489)
T ss_pred             HHHHHcCCC---HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            445678884   4467899999998888888999999997589999999999999999999999876444 558999999


Q ss_pred             hccchhhhhheeeeEeeccCc--ccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          173 FGRATIGTCAIVLSTELVGKK--RRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      +|.|...+...+++.|.+|++  +|+++++++..+.++|.+++|.+ +++.++.|||+.|++.++. ++..++.+...++
T Consensus       117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~-~~~~~~~~~~~~~  195 (489)
T PRK10207        117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG-LIIALLVYFACRG  195 (489)
T ss_pred             hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HHHHHHHHHHcch
Confidence            999999999999999999877  45789999999999999999998 6788889999999986543 3333333333332


Q ss_pred             chHHHH--hcCCHHHHHHHHH----------HHHhhcCCccccccc-cCccc------ccccccccchhHHHHHHhchHH
Q 040646          250 SPRWLF--IQGRKEEAVSIIK----------SISTSENQRSLIMDF-NNVSF------EQETWNVDLYSAIKILVEKKWA  310 (509)
Q Consensus       250 sp~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~l~~~~~~  310 (509)
                      ..+...  .+++..+......          ......+........ .....      -.+..+.      .+.+|+|.+
T Consensus       196 ~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~------~~~~r~r~~  269 (489)
T PRK10207        196 MVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL------DKTGRNKMF  269 (489)
T ss_pred             hhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHH
Confidence            111000  0000001000000          000000000000000 00000      0000000      134444432


Q ss_pred             HHHHHH--HHHHHHHHhHhhhcccccccc------CCc--hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhH-------H
Q 040646          311 LRRLSA--IMVTGFGIGMVYYGMPLGLGS------LSF--NLYLSVTFNALSELPASLITFFLIGKLKRKSS-------L  373 (509)
Q Consensus       311 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~g~--~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~-------~  373 (509)
                      ....+.  ..+.+.......+.++.+.++      .|+  .+.....+..+..++..++.+++.||+++|+.       +
T Consensus       270 ~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~  349 (489)
T PRK10207        270 VAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            222211  222333333333333333331      122  23334444445566677778899999998863       5


Q ss_pred             HHHHHHHHHHHHHHH-----Hhc---cchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhH
Q 040646          374 LGFTIMSGVCSVLCV-----VMG---KIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGV  445 (509)
Q Consensus       374 ~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~  445 (509)
                      .++.++.+++++.+.     ...   ..+.++.+...++.+++.....+....++.+..|++.++.++|+.+....+|+.
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~  429 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL  429 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            566666666654331     111   112344444555666777778888899999999999999999999999999998


Q ss_pred             HHHHHHHhhc------------ccchhHHHHHHHHHHHHHHHHh
Q 040646          446 FSPVLVAAGR------------QNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       446 i~p~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ++..+.....            ......|...++..++..++++
T Consensus       430 lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~  473 (489)
T PRK10207        430 LGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMA  473 (489)
T ss_pred             HHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8887764221            1123455555655555554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.92  E-value=8e-23  Score=200.20  Aligned_cols=344  Identities=12%  Similarity=0.013  Sum_probs=216.9

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HH-----hHHHHHHH
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FS-----TNMWIYSV  166 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~-----~~~~~l~~  166 (509)
                      +.+++|+   +..+.|++.+.+.+++.+++++.|+++|| +|||+.++.+....+++.....   +.     +.+..+++
T Consensus        29 ~~~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (396)
T TIGR00882        29 LHDVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIV  104 (396)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4556888   55589999999999999999999999999 9999999887766655443321   11     22345567


Q ss_pred             HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhhee
Q 040646          167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      .|++.|++.+...+....+..|..  ++++...+......++|.+++|.++.++.+.+||.+|++.+++.++..++.+..
T Consensus       105 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       105 GGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             HHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHh
Confidence            788899888888887777665543  334566778888889999999999655556799999999888877765444444


Q ss_pred             ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646          247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM  326 (509)
Q Consensus       247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (509)
                      .||+|+.       ++..+        ..           +   .++++++..+.++++++|.++...+..+........
T Consensus       183 ~~~~~~~-------~~~~~--------~~-----------~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~  233 (396)
T TIGR00882       183 KPKAPSS-------ATVAN--------AL-----------G---ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDV  233 (396)
T ss_pred             CCCCchh-------hhhhc--------cc-----------c---cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            4554320       00000        00           0   000111223577888888765544444333332222


Q ss_pred             hhhcccccc----ccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646          327 VYYGMPLGL----GSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI  399 (509)
Q Consensus       327 ~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (509)
                      .....+.+.    .+.+.+...   ...+..+...++.+..+++.||+|+|+.+.++..+.++...+....  .+.+...
T Consensus       234 ~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~  311 (396)
T TIGR00882       234 FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVV  311 (396)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHH
Confidence            211222222    222333222   2333446677778889999999999999888887777766554442  2233323


Q ss_pred             HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHH-HHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH
Q 040646          400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISM-VRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF  475 (509)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      ...++.+.+..........+..+..|++.++++.+. .+....+|+.++|.+.+..  ..++...+.+.+++.++..+.
T Consensus       312 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       312 ILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            333333333333333445567777888888887766 5677899999999888833  234556677766666555544

>PTZ00207 hypothetical protein; Provisional

Probab=99.92  E-value=2.6e-23  Score=206.26  Aligned_cols=377  Identities=11%  Similarity=0.009  Sum_probs=237.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH------hHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS------TNMWIYS  165 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~l~  165 (509)
                      .|.+++++|+   +..+.+++.++. ....+++++.|++.|| +|||+++.++.++++++.++++++      ++++.+.
T Consensus        50 s~~L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~  124 (591)
T PTZ00207         50 SGAMQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS  124 (591)
T ss_pred             HHHHHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence            5789999999   455788888764 4456678889999999 999999999999999999999997      6899999


Q ss_pred             HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHH-HHHHHHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646          166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLS-LPAIAYINRGSSWRRIYLYTSIPTILYCILVR  244 (509)
Q Consensus       166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~  244 (509)
                      +.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++...+.. .+|+..|++.+++.++..++..
T Consensus       125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999996 78999999999999999876 444443333 3599999988888888777776


Q ss_pred             eeecCch--HHHHhcCCHHHHHHHHHHHH---------------------------------------------------
Q 040646          245 FLVRESP--RWLFIQGRKEEAVSIIKSIS---------------------------------------------------  271 (509)
Q Consensus       245 ~~~~esp--~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  271 (509)
                      .++++.|  ++...+++.++.++..++..                                                   
T Consensus       203 ~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v  282 (591)
T PTZ00207        203 VFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVT  282 (591)
T ss_pred             hheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            6666554  33322221111111100000                                                   


Q ss_pred             ------------------hhcCCc-cccc-cccCcc-----cccc--------c-ccccchhHHHHHHhchHHHHHHHHH
Q 040646          272 ------------------TSENQR-SLIM-DFNNVS-----FEQE--------T-WNVDLYSAIKILVEKKWALRRLSAI  317 (509)
Q Consensus       272 ------------------~~~~~~-~~~~-~~~~~~-----~~~~--------~-~~~~~~~~~~~l~~~~~~~~~~~~~  317 (509)
                                        +..+++ +.+. +.++.+     .+.+        + ..++...++++.+++..+|..++..
T Consensus       283 ~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~  362 (591)
T PTZ00207        283 VIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSI  362 (591)
T ss_pred             HHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHH
Confidence                              000000 0000 000000     0000        0 0011112778888887766555554


Q ss_pred             HHHHHHHhHhhhccccccccC-Cc--hH--HH-HHHHHHhhhhhHHHHHHHHhhhcCch--------h-HHHHHHHHHHH
Q 040646          318 MVTGFGIGMVYYGMPLGLGSL-SF--NL--YL-SVTFNALSELPASLITFFLIGKLKRK--------S-SLLGFTIMSGV  382 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~-g~--~~--~~-~~~~~~~~~~~~~~~~g~l~dr~gr~--------~-~~~~~~~~~~~  382 (509)
                      ++.+.......+.+..+.+.+ |.  +.  .. ...+.++.+.+|++..|++.....+|        . .+.+..+ +.+
T Consensus       363 ~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~  441 (591)
T PTZ00207        363 FCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CII  441 (591)
T ss_pred             HHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHH
Confidence            444333333333334444445 43  11  11 45777899999999999877222221        2 2333333 444


Q ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHH-HHHHHhh-------
Q 040646          383 CSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFS-PVLVAAG-------  454 (509)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~-p~~~~~~-------  454 (509)
                      +.+++.+.. +.. ...+-.++.+++.+..+++....++|+|. ++-|+-.-+.....-+|..+. ..+.|..       
T Consensus       442 ~~lll~~~~-p~~-~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k  518 (591)
T PTZ00207        442 TMLTLFLTL-PKA-ALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADK  518 (591)
T ss_pred             HHHHHHHHC-Ccc-HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444444422 212 23334456667888888999999999999 777877777776666666654 3343311       


Q ss_pred             --------cccchhHHHHHHHHHHHHHHHHhhc
Q 040646          455 --------RQNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       455 --------~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                              ..-...++++++++++++.+....+
T Consensus       519 ~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        519 LGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             CCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence                    1113457888888887777765433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.92  E-value=6.5e-23  Score=203.07  Aligned_cols=337  Identities=16%  Similarity=0.125  Sum_probs=235.0

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhhccchhh
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-----TNMWIYSVLRFINGFGRATIG  179 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~  179 (509)
                      |...++++..+..+...+.++++|.++|| ++||++++.+.++.++..++.++.     .+.+.+++.-++.|++.+...
T Consensus        43 S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   43 SPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            56689999999999999999999999999 999999999998877665555432     368899999999999999999


Q ss_pred             hhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcC
Q 040646          180 TCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQG  258 (509)
Q Consensus       180 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~  258 (509)
                      |...+++.|..|+++...+.++.+...++..++||.+| .++...|-.+.|.+.++..++.. .....++..++    + 
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i-~~l~~~~~~~~----~-  195 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI-LALLRWKPPPP----P-  195 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcccccc----c-
Confidence            99999999999999999999999999999999999994 56666778888988877666543 32233332110    0 


Q ss_pred             CHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccc-c
Q 040646          259 RKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLG-S  337 (509)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  337 (509)
                      +....++..+.+                           ...++-+.++|..+..+...++..+........+|++.+ .
T Consensus       196 ~~~~~e~~~~~l---------------------------~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~  248 (524)
T PF05977_consen  196 SSLPRERFFSAL---------------------------REGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV  248 (524)
T ss_pred             cccchhhhhhhH---------------------------HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence            000000111111                           123455555666554444444444433333344566654 3


Q ss_pred             CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhH
Q 040646          338 LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFS  414 (509)
Q Consensus       338 ~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (509)
                      ++.++...+   ...+++.++|.++.+++.+|+++++++..+.++.+++.+.+.+.  ++.+......++.+++......
T Consensus       249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l~l~G~~~~~~~~  326 (524)
T PF05977_consen  249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIALFLAGAAWIIANS  326 (524)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence            566554443   44558888999999999999999888888887777776666663  3334444444455555555556


Q ss_pred             HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHh
Q 040646          415 LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       415 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ...+...+..|++.||+++++..+....+..+|.++.|...  .+....+.+.++..+++.++..
T Consensus       327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  327 SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            67788999999999999999999888777777777777322  2333444444544444444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.91  E-value=4e-22  Score=198.31  Aligned_cols=371  Identities=11%  Similarity=0.021  Sum_probs=222.7

Q ss_pred             eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchh
Q 040646           99 WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATI  178 (509)
Q Consensus        99 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~  178 (509)
                      +|+   +..+.+++.+.+.++..++++++|+++||++|||+++.++.++.+++.++.+++++++.+.++|++.|++.|..
T Consensus        43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~  119 (475)
T TIGR00924        43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF  119 (475)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence            788   45589999999999999999999999998459999999999999999999999999999999999999999999


Q ss_pred             hhhheeeeEeeccCcc---cchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeec----Cc
Q 040646          179 GTCAIVLSTELVGKKR---RGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVR----ES  250 (509)
Q Consensus       179 ~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~----es  250 (509)
                      .+...++++|++|+++   |+++.+++..+.++|.+++|++ +++.++.|||+.|.+.++..++.. +.+.+.+    +.
T Consensus       120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~  198 (475)
T TIGR00924       120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDI  198 (475)
T ss_pred             cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHcccccccC
Confidence            9999999999998754   8889999999999999999999 567777899999998776544432 2222222    22


Q ss_pred             hHHHHhcCCHHHHHHHHHHH----------Hh-hcCCcccccccc-C-------cccccccccccchhHHHHHHhchHHH
Q 040646          251 PRWLFIQGRKEEAVSIIKSI----------ST-SENQRSLIMDFN-N-------VSFEQETWNVDLYSAIKILVEKKWAL  311 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~~~~~~  311 (509)
                      |+. ..+.+.++........          .. ....+....... .       ........++  ..+..+-.|.....
T Consensus       199 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  275 (475)
T TIGR00924       199 GSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP--RLDAVARNKMYAYI  275 (475)
T ss_pred             CCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHhHHHHHH
Confidence            210 0000001100000000          00 000000000000 0       0000000000  00000000111111


Q ss_pred             HHHHHHHHHHHHHhHhhhcccccccc--------CCchHHHHHHHHHhhhhhHHHHHHHHhhhcCc-----hhHH--HHH
Q 040646          312 RRLSAIMVTGFGIGMVYYGMPLGLGS--------LSFNLYLSVTFNALSELPASLITFFLIGKLKR-----KSSL--LGF  376 (509)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----~~~~--~~~  376 (509)
                      ..++...+.+.........++.+.++        ...++.....+.++..++..++..++..|++|     +...  .++
T Consensus       276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G  355 (475)
T TIGR00924       276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG  355 (475)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence            22222223333333333333332221        11224444445555444444443333333332     3333  566


Q ss_pred             HHHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646          377 TIMSGVCSVLCVVM-------GKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV  449 (509)
Q Consensus       377 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~  449 (509)
                      .++.++++..+.+.       ...+.++.+...++..++.....|....+..+..|++.|++.+|+......+|..+++.
T Consensus       356 ~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~  435 (475)
T TIGR00924       356 MLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY  435 (475)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776666655431       11234444555556667777888999999999999999999999999999999999888


Q ss_pred             HHHhh--cccchhHHHHHHHHHHHHHHHH
Q 040646          450 LVAAG--RQNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       450 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +....  ..+....+...++..++..++.
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       436 LATFGAVPQGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence            87632  2223344555555555444444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.91  E-value=2e-23  Score=213.18  Aligned_cols=279  Identities=16%  Similarity=0.126  Sum_probs=197.5

Q ss_pred             CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-----------
Q 040646           91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-----------  159 (509)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-----------  159 (509)
                      .+|+++++|++   ++.+.|++.+.+.++++++.++.|+++|| +|||+++.+++++++++++++++.+           
T Consensus        55 ~l~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~  130 (633)
T TIGR00805        55 SLTTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT  130 (633)
T ss_pred             hchhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence            38999999999   55589999999999999999999999999 9999999999999999999998764           


Q ss_pred             ----------------------------------------HHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhh
Q 040646          160 ----------------------------------------NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVG  199 (509)
Q Consensus       160 ----------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~  199 (509)
                                                              .+..++++|+++|+|.+..++...+++.|++|+++|++++
T Consensus       131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~  210 (633)
T TIGR00805       131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI  210 (633)
T ss_pred             ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence                                                    2557889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHH-HHhcCC----------------------cchHHHHHHHhhHHHHHHHhheeecCc-hHHHH
Q 040646          200 SIGFFCFTLGFLSLPAIA-YINRGS----------------------SWRRIYLYTSIPTILYCILVRFLVRES-PRWLF  255 (509)
Q Consensus       200 ~~~~~~~~~G~~~~~~~~-~~~~~~----------------------~wr~~f~~~~~~~~~~~~~~~~~~~es-p~~~~  255 (509)
                      +++..+..+|.++|++++ ++...+                      +||..|++.+++.++.+++. +++|+. |+.. 
T Consensus       211 ~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~lp~~~-  288 (633)
T TIGR00805       211 GILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKALPKEG-  288 (633)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccccCCcc-
Confidence            999999999999999984 443221                      27778888888888766544 455543 3210 


Q ss_pred             hcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc
Q 040646          256 IQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL  335 (509)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (509)
                      .+.+.++.+    +..  .+. ..    ++...+.....++....++.++++|.++...+..++...........+|.++
T Consensus       289 ~~~~~~~~~----~~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl  357 (633)
T TIGR00805       289 KRVNVDVHE----TEK--LEK-SE----DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYL  357 (633)
T ss_pred             cccchhhhh----hhc--ccc-cc----cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000000    000  000 00    0000000001112234577899999877777776666666655555566666


Q ss_pred             c-cCCchHHHHHHHHHh----hhhhHHHHHHHHhhhcCc--hhHHHHHHHHHHHHHHH
Q 040646          336 G-SLSFNLYLSVTFNAL----SELPASLITFFLIGKLKR--KSSLLGFTIMSGVCSVL  386 (509)
Q Consensus       336 ~-~~g~~~~~~~~~~~~----~~~~~~~~~g~l~dr~gr--~~~~~~~~~~~~~~~~~  386 (509)
                      + .++.++..+..+.++    +.++|.+++|+++||+++  |+.+..+.++..++.+.
T Consensus       358 ~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       358 ENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            5 578887776655442    456788999999999984  45555555555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.4e-23  Score=189.95  Aligned_cols=332  Identities=17%  Similarity=0.125  Sum_probs=226.1

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV  184 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  184 (509)
                      ++.++|++.+++.+...+.+++.|.+.|| +|+|-.+++|+.+...+++++++..+|++++++|.++|+|.+...+...+
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            45699999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeccCc-ccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHH
Q 040646          185 LSTELVGKK-RRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEE  262 (509)
Q Consensus       185 ~i~e~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~  262 (509)
                      +++|.+|++ +|++++|+.-.+.++|.++||.+| .+-+..|.+.+|++.++++++-..+.++.++.+..      +.+ 
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~------~~~-  255 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM------DPD-  255 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc------Ccc-
Confidence            999999865 589999999999999999999995 66677899999999999999977676666654311      000 


Q ss_pred             HHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccc-cCC--
Q 040646          263 AVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLG-SLS--  339 (509)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g--  339 (509)
                                                     +.++..++++++++|..+...........+..+.-=.++.+.. ...  
T Consensus       256 -------------------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p  304 (464)
T KOG3764|consen  256 -------------------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTP  304 (464)
T ss_pred             -------------------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCC
Confidence                                           1112235788999987544433333333333333222333222 222  


Q ss_pred             -chHHHHHHHHHhhhhhHHHHHHHHhhhcCchhH--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHH
Q 040646          340 -FNLYLSVTFNALSELPASLITFFLIGKLKRKSS--LLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLL  416 (509)
Q Consensus       340 -~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (509)
                       +....+....++...++..+.|.+.||++..+.  ...+.+..+.++....+...... .++....++ ++.....+..
T Consensus       305 ~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~-L~vp~~~l~-~~i~~~dasl  382 (464)
T KOG3764|consen  305 GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ-LWVPNFGLG-FGIGLADASL  382 (464)
T ss_pred             CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH-HhhhhHHHH-HHHHHHHHHH
Confidence             222334444557788899999999999994433  33444444443333333222111 111111111 2222222222


Q ss_pred             ---Hhhcccccchh---hhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHh
Q 040646          417 ---LIYTLELFPTC---VRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       417 ---~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                         ..+..|.-..+   ..|...++......+|.+++|.+.+...  .+..+...+.+...++-+-++.
T Consensus       383 ~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~  451 (464)
T KOG3764|consen  383 IPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL  451 (464)
T ss_pred             hhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence               23333332223   5577888888888999999999998433  3344445555555555444433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=8.5e-22  Score=179.82  Aligned_cols=319  Identities=17%  Similarity=0.103  Sum_probs=236.4

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMWIYSVLR  168 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r  168 (509)
                      .|++++.|++   +..+.+++...++.|+.+++++.|++.+| +|+|+.+++++.++++++.++.   ...+|..++++-
T Consensus        36 ip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~l  111 (422)
T COG0738          36 IPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVAL  111 (422)
T ss_pred             HHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            8999999999   55589999999999999999999999999 9999999999999999999985   556899999999


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-------------------CcchHH
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-------------------SSWRRI  228 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-------------------~~wr~~  228 (509)
                      ++.|.|.+...+.+..++....++++..+.+.+.+...++|.+++|++ ++++.+                   ..||++
T Consensus       112 Fila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~p  191 (422)
T COG0738         112 FILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFP  191 (422)
T ss_pred             HHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhH
Confidence            999999999999999999999999888999999999999999999999 454431                   247888


Q ss_pred             HHHHHhhHHHHHHHhhe-eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhc
Q 040646          229 YLYTSIPTILYCILVRF-LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEK  307 (509)
Q Consensus       229 f~~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  307 (509)
                      |...+...+++.+.... -.|+.+.        +                            .++..+.+.....+++++
T Consensus       192 Yl~~~~~lvll~v~~~~~k~p~~~~--------~----------------------------~~~~~~~~~~~~~~l~~~  235 (422)
T COG0738         192 YLILAGLLVLLAVLILLSKLPDLQV--------A----------------------------APSLGASGSAGLSSLFQN  235 (422)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcCCc--------c----------------------------cccccccccchHHHHHhC
Confidence            88877776665543321 1122110        0                            000001111146788999


Q ss_pred             hHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 040646          308 KWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVC  383 (509)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~  383 (509)
                      |..+...+..++...........++.++.+ .|.+...   .......+.++|++++.++..|+...|.+....++..+.
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            987776666665555444444444444444 5655433   334445778899999999999999999988887777766


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc
Q 040646          384 SVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR  455 (509)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~  455 (509)
                      ++...+.+.  ...... ..+.++..+..+|...+...+..| ++. ...|..-....+|+.+-|.+.|...
T Consensus       316 ~~~~~l~~g--~v~~~~-l~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i~  382 (422)
T COG0738         316 LLAVALIGG--VVALYA-LFLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVIA  382 (422)
T ss_pred             HHHHHHhcC--hHHHHH-HHHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHHH
Confidence            666666443  333333 344556677889999999999999 433 3334444566788889999988443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.90  E-value=1e-22  Score=183.16  Aligned_cols=324  Identities=16%  Similarity=0.141  Sum_probs=202.5

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV  184 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  184 (509)
                      +....|.+.|.|+++..+.++.+|.++|| +|||++++++++..++..++.+.+.|+..+++.|++.|+.-| ...+..+
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA  143 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA  143 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence            45578999999999999999999999999 999999999999999999999999999777788999999977 4667789


Q ss_pred             eeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc--CCcchHHHHHHHhh----HHHHHHHhheeecCchHHHHhc
Q 040646          185 LSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR--GSSWRRIYLYTSIP----TILYCILVRFLVRESPRWLFIQ  257 (509)
Q Consensus       185 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~--~~~wr~~f~~~~~~----~~~~~~~~~~~~~esp~~~~~~  257 (509)
                      +++|.+++|+|++.++.....+++|.++||.+| ++..  +..-+++|.....+    ...-.....+++||+-+   .+
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~r  220 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LR  220 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---ch
Confidence            999999999999999999999999999999995 4443  11122333332222    22212234577899832   11


Q ss_pred             CCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHH-------HHHHHHHHHHHHhHhhhc
Q 040646          258 GRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALR-------RLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~  330 (509)
                      ++.++... ..+.   .+++   .+....+          ...-....+++....       ..+..+...+.....-+.
T Consensus       221 k~~~~~~~-~~~~---~~~~---~~~~~~~----------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t  283 (451)
T KOG2615|consen  221 KRNDEHST-LQEA---ADDR---LALLKFA----------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENT  283 (451)
T ss_pred             hhcccccc-hhhh---hhhh---hhhcchh----------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11111100 0000   0000   0000000          000111222322211       111111122222222222


Q ss_pred             cccc-cccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchh-----HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          331 MPLG-LGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKS-----SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       331 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      .+.+ -+.+|+++...+-+....++.+.++.+.+..+..|.+     .+.....++.-..+++...  ..+........+
T Consensus       284 ~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l  361 (451)
T KOG2615|consen  284 VLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTL  361 (451)
T ss_pred             HHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHH
Confidence            2222 3567888777776666667777777777766665544     3333333333333333322  222222222233


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      -.+......+....+.....|+++||+..|+....+.++-++||.+.|
T Consensus       362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g  409 (451)
T KOG2615|consen  362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG  409 (451)
T ss_pred             HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence            334444455667788889999999999999999999999999999997

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.90  E-value=4.2e-21  Score=187.64  Aligned_cols=341  Identities=9%  Similarity=-0.028  Sum_probs=218.8

Q ss_pred             Ccceeeeeccccccccccchh--HHHHHHHHHHHHhhh-hhccccCCCchHHHHHHHHHH-HHHHHHHH---HHhH-HHH
Q 040646           92 HTSIISEWDLECASSLIKGLP--ASSFFMGCLAGGLIL-ATLADSSLGRKNMLFLSCLMM-SVSCLLTI---FSTN-MWI  163 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~--~s~~~~~~~i~~~~~-g~l~dr~~Grr~~l~~~~~~~-~i~~~~~~---~~~~-~~~  163 (509)
                      +|.+.+|.|.   +..++|++  .+.+.+...+.+|+. ++..|| +||||..++...+. ++.....+   ...+ ..+
T Consensus        24 lp~~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (390)
T TIGR02718        24 LPTLLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGW   99 (390)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHH
Confidence            7888899998   55589997  467788888888888 457999 99998875555332 21222222   1222 334


Q ss_pred             HHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646          164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       164 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~  242 (509)
                      ++..-++.++..+...+...++..|..++++++...+....+..+|.++++.. +++.+..|||..|++.++..++..+.
T Consensus       100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~  179 (390)
T TIGR02718       100 AVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVC  179 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            44555666677777888888888888888888888888888889999999877 57778889999999999887765544


Q ss_pred             hheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHH
Q 040646          243 VRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGF  322 (509)
Q Consensus       243 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  322 (509)
                      ..+..|++|+    +.+.+                                 ++...++++++|+|..+......++...
T Consensus       180 ~~~~~~~~~~----~~~~~---------------------------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~  222 (390)
T TIGR02718       180 VLWLKDRAVA----SPEAP---------------------------------LARRASLFRFFRRPLAWSLLALALLSAM  222 (390)
T ss_pred             HHHcCCCCcC----ccccc---------------------------------hhhHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence            4333333221    00000                                 0011246778888876655555555544


Q ss_pred             HHhHhhhccccccccCCchHHHHHHHHH----hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc----cch
Q 040646          323 GIGMVYYGMPLGLGSLSFNLYLSVTFNA----LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG----KIW  394 (509)
Q Consensus       323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~----~~~  394 (509)
                      .....+...+.+.++.|.+......+..    ...+++.++.|++.||+|+|+.+..+..+.++..+......    ...
T Consensus       223 ~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  302 (390)
T TIGR02718       223 TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPG  302 (390)
T ss_pred             HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCc
Confidence            4444444456666778888777665543    34556788999999999999998877665533322222111    111


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhcccccch-hhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHH
Q 040646          395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPT-CVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGL  471 (509)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~  471 (509)
                      .........+..+..+...+.......+..++ +.+++.+++.+....+|..++|.+.+...  .++...+...+++.++
T Consensus       303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~  382 (390)
T TIGR02718       303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL  382 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            12222222233333445555556665566665 78999999999999999999999988332  2333455555554444


Q ss_pred             HH
Q 040646          472 CG  473 (509)
Q Consensus       472 ~~  473 (509)
                      +.
T Consensus       383 a~  384 (390)
T TIGR02718       383 AI  384 (390)
T ss_pred             HH
Confidence            43

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.89  E-value=2.3e-20  Score=184.05  Aligned_cols=351  Identities=14%  Similarity=0.107  Sum_probs=215.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      ++.|..|+|-+.    ...|+.+...++.+++.++.|.++|. ||||.+++.+.++..+|+++++.++|...++++..+.
T Consensus        67 l~~I~~diG~~~----~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   67 LPYINADIGGSD----NWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHhcCCCc----cchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence            678888888643    47899999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhh-eeecC
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVR-FLVRE  249 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~~e  249 (509)
                      |+|.|..... ...++|..|.|.|+...++......+....++.++ .+..+.+|||.|++.++...+..++.. ++.|.
T Consensus       142 GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  142 GVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             HHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9998776654 55589999999998877766655555555677775 445567899999998887666443333 33332


Q ss_pred             chHHHHhcCC---HHHHHHHHHHHHh-------------hcCCccccccccCccc-----------------cccccccc
Q 040646          250 SPRWLFIQGR---KEEAVSIIKSIST-------------SENQRSLIMDFNNVSF-----------------EQETWNVD  296 (509)
Q Consensus       250 sp~~~~~~~~---~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-----------------~~~~~~~~  296 (509)
                      +  +...+++   ..+..+.++.+..             -.-......+.+..+.                 |..... +
T Consensus       221 ~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~-~  297 (599)
T PF06609_consen  221 P--RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAP-K  297 (599)
T ss_pred             c--hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccC-C
Confidence            2  2111221   1121222211100             0000000111111111                 100111 1


Q ss_pred             chhHHHHHHhchHHHHHH-HHHHHHHHHH-hHhhhccccccccCCch------HHHHHHHHHhhhhhHHHHHHHHhhhcC
Q 040646          297 LYSAIKILVEKKWALRRL-SAIMVTGFGI-GMVYYGMPLGLGSLSFN------LYLSVTFNALSELPASLITFFLIGKLK  368 (509)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g  368 (509)
                      .+--..++|++++..... ++.++..... ...+++.......++.+      ........+++..+|.++.+.+..+++
T Consensus       298 ~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir  377 (599)
T PF06609_consen  298 DPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIR  377 (599)
T ss_pred             CCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHcc
Confidence            111234577764322222 2222211111 11111111111111221      223344456677788888889988888


Q ss_pred             chhHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHH
Q 040646          369 RKSSL-LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFS  447 (509)
Q Consensus       369 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~  447 (509)
                      |-|.. +++.+++.+++.++.....++....+.+.++.+++.+.........+.-..|++.-+++.|+...+..+|+.++
T Consensus       378 ~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg  457 (599)
T PF06609_consen  378 HIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIG  457 (599)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHH
Confidence            76654 46666666555555554444444445556666666666655666777778899999999999988888877766


Q ss_pred             HHHH
Q 040646          448 PVLV  451 (509)
Q Consensus       448 p~~~  451 (509)
                      ..+.
T Consensus       458 ~aIy  461 (599)
T PF06609_consen  458 YAIY  461 (599)
T ss_pred             HHHH
Confidence            5543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.88  E-value=1.2e-19  Score=176.78  Aligned_cols=362  Identities=12%  Similarity=0.077  Sum_probs=233.3

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCchHHHHHH-HHHHHHHHHHHHHHhHHH------
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRKNMLFLS-CLMMSVSCLLTIFSTNMW------  162 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr~~l~~~-~~~~~i~~~~~~~~~~~~------  162 (509)
                      +.+.+++|.   +..+.+++..+..+...+.+|+.|+++||   |+||||.++++ .....++.++.+++++.+      
T Consensus        28 ~~yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~  104 (477)
T TIGR01301        28 TPYVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN  104 (477)
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc
Confidence            445667888   55589999999999999999999999994   49999998775 666666667777766643      


Q ss_pred             -----------HHHHHHHHHhhccchhhhhheeeeEeeccCccc--chhhhhhHHHHHHHHHHHHHHHHHh---cC----
Q 040646          163 -----------IYSVLRFINGFGRATIGTCAIVLSTELVGKKRR--GQVGSIGFFCFTLGFLSLPAIAYIN---RG----  222 (509)
Q Consensus       163 -----------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~~---~~----  222 (509)
                                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+.+.++|.++++.++.+.   ..    
T Consensus       105 ~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~  184 (477)
T TIGR01301       105 LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT  184 (477)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence                       233333445557787888889999999998865  5799999999999999999986442   11    


Q ss_pred             ---------CcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccc
Q 040646          223 ---------SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETW  293 (509)
Q Consensus       223 ---------~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (509)
                               .+.|..|++.++..++..++..+..+|.|..     ..++..+               ++.+   ..++. 
T Consensus       185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~-----~~~~~~~---------------~~~~---~~~~~-  240 (477)
T TIGR01301       185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI-----GSDDFIN---------------SEAA---PPSKH-  240 (477)
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC-----ccccchh---------------hhcc---ccccc-
Confidence                     1568899998888888777888889997531     0000000               0000   00000 


Q ss_pred             cccchhHHHHHHh-----chHHHHHHHHHHHHHHHHhHhhhccccccc-c-CC--------chH-----HHHHHHHHhhh
Q 040646          294 NVDLYSAIKILVE-----KKWALRRLSAIMVTGFGIGMVYYGMPLGLG-S-LS--------FNL-----YLSVTFNALSE  353 (509)
Q Consensus       294 ~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g--------~~~-----~~~~~~~~~~~  353 (509)
                        +....++++++     .+.+++..++.++.|++.....++.+.+.. + ++        ++.     .....+.++..
T Consensus       241 --~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~  318 (477)
T TIGR01301       241 --GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVL  318 (477)
T ss_pred             --chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence              00011222222     245566666777777766544333222221 1 11        111     12233444555


Q ss_pred             hhHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHhcc---c--h--------------hHHHHHHHHHHHHHHHHHh
Q 040646          354 LPASLITFFLIGKLKR-KSSLLGFTIMSGVCSVLCVVMGK---I--W--------------TSVEIGLELVAFFSACTAF  413 (509)
Q Consensus       354 ~~~~~~~g~l~dr~gr-~~~~~~~~~~~~~~~~~~~~~~~---~--~--------------~~~~~~~~~~~~~~~~~~~  413 (509)
                      .+.+++..++.+|+|+ |++..++.++.++++....+...   +  .              .+..+..+...++.....+
T Consensus       319 ~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~  398 (477)
T TIGR01301       319 GITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY  398 (477)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH
Confidence            5667778889999985 66667887777777776665332   0  0              1333444455556666777


Q ss_pred             HHHHhhcccccch--hhhhhHHHHHHHHHhHhhHHHHHHHH----hhcccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646          414 SLLLIYTLELFPT--CVRNSAISMVRQALVFGGVFSPVLVA----AGRQNNFLSYGIFGLVIGLCGLFV-IGLPETR  483 (509)
Q Consensus       414 ~~~~~~~~~~~p~--~~r~~~~g~~~~~~~~g~~i~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  483 (509)
                      .+.++++++..|+  +..|..+|+.|.+..+.+++..+..+    ....+....+.+.++..++++++. +.+|+.+
T Consensus       399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            8889999999985  45589999999988777776555444    333344556666677777777765 4566654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.88  E-value=6.3e-21  Score=189.16  Aligned_cols=337  Identities=13%  Similarity=0.047  Sum_probs=214.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC-----chHHHHHHHHHHH-HHHHHHHHHhHHH-HH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG-----RKNMLFLSCLMMS-VSCLLTIFSTNMW-IY  164 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G-----rr~~l~~~~~~~~-i~~~~~~~~~~~~-~l  164 (509)
                      .|.+.+++|+   +..+.+...+...+...+-.+ +|+++|| ++     ||+.++++.++.+ ++....+..++.. ..
T Consensus        49 ~~~l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~  123 (468)
T TIGR00788        49 SPMLTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVA  123 (468)
T ss_pred             hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence            6778888999   555898999999999999765 9999999 98     7787888877763 4333333335544 44


Q ss_pred             HHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHH---HHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646          165 SVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCF---TLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       165 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~---~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~  240 (509)
                      .+.+++.+++.+...+...++..|..+ +++....+.....+   .+|.++++.+ +.+.+..+||..|++.+.+.++. 
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-  201 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-  201 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-
Confidence            448899999999999999999999998 55555444443433   4799999888 56677789999999988887775 


Q ss_pred             HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH-
Q 040646          241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV-  319 (509)
Q Consensus       241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  319 (509)
                      .....++||++.....+.+.++.... ...                .........+.....+..+++|..++.+...++ 
T Consensus       202 ~~~~~~~~E~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~  264 (468)
T TIGR00788       202 LFVSNLSKERRAFVRPRIGTYLEMNM-ALL----------------TLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLS  264 (468)
T ss_pred             HHHHHhcccccccccccccccchhhh-hhh----------------hhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence            34456778753100000000000000 000                000000001112235556777776654444444 


Q ss_pred             HHHHHhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc----
Q 040646          320 TGFGIGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK----  392 (509)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~----  392 (509)
                      .....+......-+.....|.++...+   ...+++.+++..+.+++.+|++.|+++.++.++.+++.........    
T Consensus       265 ~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~  344 (468)
T TIGR00788       265 YANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNL  344 (468)
T ss_pred             HhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccc
Confidence            222211111111122245677655543   4455778888888999999999999999888887776644321110    


Q ss_pred             ----chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          393 ----IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       393 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                          ...+......++..+..+..+.....++.+..|++.+++.+++.+.+.++|..+++.+.+
T Consensus       345 ~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg  408 (468)
T TIGR00788       345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV  408 (468)
T ss_pred             ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence                111222223344445555666677899999999999999999999999999998887655

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.88  E-value=2e-19  Score=176.54  Aligned_cols=352  Identities=13%  Similarity=0.063  Sum_probs=239.6

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchHH-HHHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHhhccchhhhh
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNM-LFLSCLMMSVSCLLTIFS-T-NMWIYSVLRFINGFGRATIGTC  181 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~-l~~~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~  181 (509)
                      .+...++..++..+-.++..|+.|.++|+ -|+||. +.+..++..+++.+..+. + +++...+.-++.-++.+...+.
T Consensus        68 ~~s~~~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf  146 (477)
T PF11700_consen   68 TSSLWLYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF  146 (477)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            34467888999999999999999999999 776554 555566666677777764 3 4555555666666788888888


Q ss_pred             heeeeEeeccCccc--------------------------chhhhhhHHHHHHHHHHHHHHHHH--hc-------CCcch
Q 040646          182 AIVLSTELVGKKRR--------------------------GQVGSIGFFCFTLGFLSLPAIAYI--NR-------GSSWR  226 (509)
Q Consensus       182 ~~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~--~~-------~~~wr  226 (509)
                      ..+++.|..+++++                          ++..+.-.....+|.++.-++...  ..       ..+-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            89999999999888                          899998888888888877666422  11       12358


Q ss_pred             HHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHh
Q 040646          227 RIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE  306 (509)
Q Consensus       227 ~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  306 (509)
                      ..+.+.++..++..+...+++||.|+....+..........+++.                           .+++++.+
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~---------------------------~t~k~~~~  279 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLW---------------------------RTFKEIRK  279 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHH---------------------------HHHHHHHh
Confidence            889999998888888888999987641000011111111222221                           24566666


Q ss_pred             chHHHHHHHHHHHHHHHHhHhh-hccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCch--hHHHHHHHHH
Q 040646          307 KKWALRRLSAIMVTGFGIGMVY-YGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRK--SSLLGFTIMS  380 (509)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~--~~~~~~~~~~  380 (509)
                      .|...+.++..++..-+.+... ....+..+.+|++...   ..++..+.+++|+++.+++.||+|.|  +++.......
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            6665555554444444443333 3333444467776544   34555688999999999999999998  7766665555


Q ss_pred             HHHHHHHHH------hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646          381 GVCSVLCVV------MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG  454 (509)
Q Consensus       381 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~  454 (509)
                      .+..+...+      ......+....+.++.+...+..++..-++.+|+.|+++.+..+|+..+.+...++++|++.+..
T Consensus       360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i  439 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI  439 (477)
T ss_pred             HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322222      11233344455566677778888899999999999999999999999999999999999999832


Q ss_pred             ---cccchhHHHHHHHHHHHHHHHHhhccCCCC
Q 040646          455 ---RQNNFLSYGIFGLVIGLCGLFVIGLPETRD  484 (509)
Q Consensus       455 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (509)
                         ..+....+....++.+++.++.+.++..|.
T Consensus       440 ~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  440 TDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG  472 (477)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence               233445566666666666666666655443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.88  E-value=1.3e-20  Score=188.58  Aligned_cols=351  Identities=12%  Similarity=0.031  Sum_probs=203.3

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRFIN  171 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~  171 (509)
                      .+.+++|++   ..+.+++.+.+........+++|+++|| + |||+++.++.++.+++.+++++++ +.+.+.++|+++
T Consensus        47 yl~~~lg~s---~~~a~~~~~~~~~~~~~~~~~~G~LaDr-~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~  122 (500)
T PRK09584         47 YLVKQLGMS---EADSITLFSSFSALVYGLVAIGGWLGDK-VLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATI  122 (500)
T ss_pred             HHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            445788884   3356777777776666666789999999 8 999999999999999999998875 566777899999


Q ss_pred             hhccchhhhhheeeeEeeccCcc--cchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH---HHhhe
Q 040646          172 GFGRATIGTCAIVLSTELVGKKR--RGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC---ILVRF  245 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~---~~~~~  245 (509)
                      |++.|...+...+++.|++|+++  |+.++++++.+.++|..++|.+ +++.++.|||+.|++.++..++..   +....
T Consensus       123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~  202 (500)
T PRK09584        123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQR  202 (500)
T ss_pred             HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999998899999998653  4567888999999999999998 677788899999998775444322   22222


Q ss_pred             eecCchHHHHhcCCHHHHHHHH-----------HHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHH
Q 040646          246 LVRESPRWLFIQGRKEEAVSII-----------KSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRL  314 (509)
Q Consensus       246 ~~~esp~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  314 (509)
                      .++|.++. ..+++.+......           ..... .+.+........................++.-++|. .. .
T Consensus       203 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~  278 (500)
T PRK09584        203 WVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLL-HNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKM-IV-A  278 (500)
T ss_pred             HhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HH-H
Confidence            33332100 0000011000000           00000 000000000000000000000000000001111111 11 1


Q ss_pred             HHHHHHHHHHhHhhhccccccc----------cCCc--hHHHHHHHHHhhhhhHHHHH----HHHhhhcCchhHHHHHHH
Q 040646          315 SAIMVTGFGIGMVYYGMPLGLG----------SLSF--NLYLSVTFNALSELPASLIT----FFLIGKLKRKSSLLGFTI  378 (509)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~----------~~g~--~~~~~~~~~~~~~~~~~~~~----g~l~dr~gr~~~~~~~~~  378 (509)
                      +..++........+...+..+.          ..|.  +......+..+..++..++.    +++.+|.+..+.+.++.+
T Consensus       279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~  358 (500)
T PRK09584        279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMV  358 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHH
Confidence            1111111112222222222211          1122  23444444454444454444    444555555567778888


Q ss_pred             HHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646          379 MSGVCSVLCVVMGKI-------WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV  451 (509)
Q Consensus       379 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~  451 (509)
                      +.+++.+.+......       +.++.+...++.+++.....|....++.+..|++.||.++|+......+|+.++..+.
T Consensus       359 l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        359 LCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887776553221       1234444455566777777888999999999999999999988877777777776665


Q ss_pred             H
Q 040646          452 A  452 (509)
Q Consensus       452 ~  452 (509)
                      +
T Consensus       439 ~  439 (500)
T PRK09584        439 N  439 (500)
T ss_pred             H
Confidence            4

>PRK09669 putative symporter YagG; Provisional

Probab=99.88  E-value=2.2e-20  Score=185.49  Aligned_cols=320  Identities=13%  Similarity=0.101  Sum_probs=207.4

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHhH------HHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFSTN------MWI  163 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~  163 (509)
                      -..+++|+   +..++|.+.++..+..++..|+.|+++||   |+|| |+.++.+.+..+++.++....++      ++.
T Consensus        35 ~~t~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~  111 (444)
T PRK09669         35 FYTDVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY  111 (444)
T ss_pred             HHHHhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            44567888   55589999999999999999999999999   5787 56666787777777766555542      456


Q ss_pred             HHHHHHHHhhccchhhhhheeeeEeec-cCcccchhhhhhHHHHHHHHHHHHHH-----HHHhc---CCcchHHHHHHHh
Q 040646          164 YSVLRFINGFGRATIGTCAIVLSTELV-GKKRRGQVGSIGFFCFTLGFLSLPAI-----AYINR---GSSWRRIYLYTSI  234 (509)
Q Consensus       164 l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~-----~~~~~---~~~wr~~f~~~~~  234 (509)
                      +++..++.+.+.......-.++.+|+. ++++|++..++...+..+|..+++.+     ..+..   ..+|+..+.+.++
T Consensus       112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i  191 (444)
T PRK09669        112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL  191 (444)
T ss_pred             HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            666777777776777777778899988 45889998888888878877666543     22221   3578988888888


Q ss_pred             hHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHH
Q 040646          235 PTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRL  314 (509)
Q Consensus       235 ~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  314 (509)
                      ++++..+...+..+|.++       +++                             +++.+...+++.++++|.++...
T Consensus       192 i~~v~~~~~~~~~~e~~~-------~~~-----------------------------~~~~~~~~~~~~~~~n~~~~~l~  235 (444)
T PRK09669        192 LGVVLFFCCFFMTKERYT-------PEV-----------------------------DNSSSVWKDLKLLLGNSQWRIMF  235 (444)
T ss_pred             HHHHHHHHHhCCeEEecC-------CCC-----------------------------cCCCCHHHHHHHHhCCchHHHHH
Confidence            777765555555555321       000                             00111234577888888866655


Q ss_pred             HHHHHHHHHHhHhhhccccccccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 040646          315 SAIMVTGFGIGMVYYGMPLGLGSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG  391 (509)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~  391 (509)
                      ...++.............++.+..-.+..   .......+..+++.++.+++.||+|+|+.+..+.++.++....+.+.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~  315 (444)
T PRK09669        236 IFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP  315 (444)
T ss_pred             HHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            54444433332222222222222111111   122233366677888899999999999998887766555444344433


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          392 KIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .++.+......++.+++.+...+..+++.+|..+       .+..|...|..+....+|..++|.+.+
T Consensus       316 ~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        316 PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334434444455566666777888889988875       233456677777777888887777765

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.87  E-value=3.2e-20  Score=166.90  Aligned_cols=316  Identities=16%  Similarity=0.127  Sum_probs=243.7

Q ss_pred             CCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646           90 QAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF  169 (509)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  169 (509)
                      |.+++|++|+|+   +....|+++++..+...+.+++..+++.| +|.++.+..++++..++.++-... +.+.++.+-.
T Consensus        33 PLL~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~  107 (395)
T COG2807          33 PLLDEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTL  107 (395)
T ss_pred             hhHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence            358999999999   55589999999999999999999999999 999999999999999999998887 7888999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC-CcchHHHHHHHhhHHHHHHHhheee
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG-SSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      +.|.|.+...+..+.++.+.+| |+-+..+++|....++|..+++.++ -+..+ .+||....+.+.++++..+..   +
T Consensus       108 l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W---l  183 (395)
T COG2807         108 LAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW---L  183 (395)
T ss_pred             HHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH---h
Confidence            9999999999999999999998 6779999999999999999888874 34444 479999999999998854332   3


Q ss_pred             cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646          248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV  327 (509)
Q Consensus       248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (509)
                      |...|     .+...                               .+.+..+...++++|.-|...+...+..+..+..
T Consensus       184 Pq~~r-----~~~~~-------------------------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~  227 (395)
T COG2807         184 PQALR-----EQAAS-------------------------------IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIV  227 (395)
T ss_pred             hhccc-----ccccc-------------------------------cccccccccccccCchhHHHHHHHHhhHHHHHHH
Confidence            32111     00000                               0001112345788887777777777777777777


Q ss_pred             hhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646          328 YYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL  403 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (509)
                      ...+|.++.+.|.+...++.+.+   +.+++.++....+.+|. ++|+.......++.++.+.+.+.+.+..+..   .+
T Consensus       228 ~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~  304 (395)
T COG2807         228 IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---AL  304 (395)
T ss_pred             HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HH
Confidence            77789999999999887765544   67778888899999875 5666777777777777777777665554443   24


Q ss_pred             HHHHHHHHHhHHHHhhcccccc-hhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          404 VAFFSACTAFSLLLIYTLELFP-TCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      +.+++.+..++.....+....+ ++..+.-.|+.+.++++-..++|++.|.
T Consensus       305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~  355 (395)
T COG2807         305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF  355 (395)
T ss_pred             HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence            5556667778887777776654 4455666778888888888899999983

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.85  E-value=7e-19  Score=175.82  Aligned_cols=323  Identities=13%  Similarity=0.070  Sum_probs=204.8

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHh------HHHHHH
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFST------NMWIYS  165 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~------~~~~l~  165 (509)
                      .+.+|+   +..++|.+..+..+--++..|+.|.++||   |+|| |+.++++.+..+++..++...+      .+..++
T Consensus        34 t~v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~  110 (473)
T PRK10429         34 TDVVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC  110 (473)
T ss_pred             HHhcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            345688   55589999999999999999999999995   3799 6777778888888766664433      244566


Q ss_pred             HHHHHHhhccchhhhhheeeeEeec-cCcccchhhhhhHHHHHHHHHHHHHHH-H----Hhc---CCcchHHHHHHHhhH
Q 040646          166 VLRFINGFGRATIGTCAIVLSTELV-GKKRRGQVGSIGFFCFTLGFLSLPAIA-Y----INR---GSSWRRIYLYTSIPT  236 (509)
Q Consensus       166 ~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~-~----~~~---~~~wr~~f~~~~~~~  236 (509)
                      +..++.+++.....+...+++.|.. ++++|.+..++...+.++|..+.+.+. .    +..   ..+|+....+.+++.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~  190 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF  190 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6677778888888888889999999 589999999987777777755554432 1    111   235777777777776


Q ss_pred             HHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHH
Q 040646          237 ILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSA  316 (509)
Q Consensus       237 ~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  316 (509)
                      ++..+...+..||.+..    ...+                           .+++++.+.+..++.++++|.++..+..
T Consensus       191 ~~~~~~~~~~~~e~~~~----~~~~---------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~  239 (473)
T PRK10429        191 IVSTIITLRNVHEVYSS----DNQV---------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGM  239 (473)
T ss_pred             HHHHHHHHcCceecCCc----cccc---------------------------cccccCCCHHHHHHHHhcCHHHHHHHHH
Confidence            66555555556664210    0000                           0000111122345566778776665555


Q ss_pred             HHHHHHHHhHhhhccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH---h
Q 040646          317 IMVTGFGIGMVYYGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV---M  390 (509)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~---~  390 (509)
                      .++.+..........+++.+....+...   ...+.++..+++.++.+++.||+|+|+.+..+..+.+++.+.+..   .
T Consensus       240 ~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~  319 (473)
T PRK10429        240 ALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA  319 (473)
T ss_pred             HHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5555444433332333444432222222   233344677888899999999999999988777765555444433   2


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          391 GKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .....+..+...++.+++.+...+..+++.+|..+       .+..|...|.......+|..+++.+.+
T Consensus       320 ~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        320 APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233333333344445556666777888888855       233455778888877777777776665

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.85  E-value=1.9e-18  Score=166.47  Aligned_cols=320  Identities=16%  Similarity=0.166  Sum_probs=222.1

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC-chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG-RKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G-rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      |..-++.|.   +..|+|.+.+...+...++++++|.++|| ++ +|+.+.+..++.++........++++.+++.-++.
T Consensus        26 ~~~L~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr-~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~  101 (400)
T PF03825_consen   26 PLYLESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADR-FGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLF  101 (400)
T ss_pred             HHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            444456677   55699999999999999999999999999 76 57888888888888777777888999888888888


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH--HHHhcCC---cchHHHHHHHhhHHHHHHHhhee
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI--AYINRGS---SWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~--~~~~~~~---~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      .+......|...++..+...  ++++-.|-.....++|..++...  ..+....   +....+++.+...++.+ ...+.
T Consensus       102 ~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~  178 (400)
T PF03825_consen  102 SFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALF  178 (400)
T ss_pred             HHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHh
Confidence            88877777877777777665  34555666667777776666433  2222222   22345566555554433 33456


Q ss_pred             ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646          247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM  326 (509)
Q Consensus       247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (509)
                      +|+.|+    +++.++                             +.++....+..+++|+|.....++..++.......
T Consensus       179 lp~~~~----~~~~~~-----------------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~  225 (400)
T PF03825_consen  179 LPKTPP----KRSAKE-----------------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAA  225 (400)
T ss_pred             CCCCcc----ccccCC-----------------------------CcccccchHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            777652    000000                             00111112345789999877777777777777777


Q ss_pred             hhhccccccccCC-chHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHH-
Q 040646          327 VYYGMPLGLGSLS-FNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGL-  401 (509)
Q Consensus       327 ~~~~~~~~~~~~g-~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  401 (509)
                      .+...+.++++.| .+.....   .+..+.+++.-...+++.+|+|.++++.++.+..++=..++.....+.+...... 
T Consensus       226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~  305 (400)
T PF03825_consen  226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQL  305 (400)
T ss_pred             HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            6666777888877 4433333   3444778888899999999999999999999999988888877533333222111 


Q ss_pred             --HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHH-HhHhhHHHHHHHH
Q 040646          402 --ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQA-LVFGGVFSPVLVA  452 (509)
Q Consensus       402 --~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~i~p~~~~  452 (509)
                        .++-+...+..+.....++.+..|++.|++++++.+.. ..+|..++.++.|
T Consensus       306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG  359 (400)
T PF03825_consen  306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG  359 (400)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence              12345556666777889999999999999999998775 4677777777776

>PRK09848 glucuronide transporter; Provisional

Probab=99.83  E-value=4.5e-18  Score=169.32  Aligned_cols=319  Identities=10%  Similarity=0.045  Sum_probs=197.0

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCchHHH-HHHHHHHHHHHHHHHHHh-------HHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRKNML-FLSCLMMSVSCLLTIFST-------NMW  162 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr~~l-~~~~~~~~i~~~~~~~~~-------~~~  162 (509)
                      -+++++|+   +..++|.+.+...+..++..++.|+++||   |+||||.. ..+.+...+.+++....+       ..+
T Consensus        34 y~~~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         34 YYTDVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            44566788   55589999999999999999999999999   24777644 556555554444432111       233


Q ss_pred             HHHHHHHHHhhccchhhhhheeeeEeeccC-cccchhhhhhHHHHH-----HHHHHHHHHHHHhc-CC--cchHHHHHHH
Q 040646          163 IYSVLRFINGFGRATIGTCAIVLSTELVGK-KRRGQVGSIGFFCFT-----LGFLSLPAIAYINR-GS--SWRRIYLYTS  233 (509)
Q Consensus       163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~-----~G~~~~~~~~~~~~-~~--~wr~~f~~~~  233 (509)
                      .+++..++.+++.+...+...++..+..++ ++|.+..++...+.+     +|..++|.++.... ..  +|.....+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  190 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA  190 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            445556677888888887777777776654 678887776655433     44555666643322 11  2222222333


Q ss_pred             hhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHH
Q 040646          234 IPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRR  313 (509)
Q Consensus       234 ~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  313 (509)
                      +++++..++.....||+++    + +                                .+++.....++.++++|.++..
T Consensus       191 v~~~~~~~~~~~~~~e~~~----~-~--------------------------------~~~~~~~~~~~~l~~n~~f~~~  233 (448)
T PRK09848        191 IAGMVLYFICFKSTRENVV----R-I--------------------------------VAQPSLKISLQTLKRNRPLFML  233 (448)
T ss_pred             HHHHHHHHHHHcCcEeccC----C-C--------------------------------ccCCCHHHHHHHHhCCchHHHH
Confidence            3333333333344555421    0 0                                0001112346778899987766


Q ss_pred             HHHHHHHHHHHhHhhhcccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646          314 LSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV  389 (509)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~  389 (509)
                      .+..++.+..........+++.++ .+.+.......   ..++.+++.++.+++.||+|+|+.+..+.++..++.+.+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~  313 (448)
T PRK09848        234 CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW  313 (448)
T ss_pred             HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            666666655554444445655554 45444333221   13456778888999999999999999888887777666655


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchh-------hhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTC-------VRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .+....+......++.+++.+...+...++.+|..|.+       .+|...|+.+....+|..+++.+.+
T Consensus       314 ~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        314 VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333333333334445566666677788888887643       4588889998888888888877765

>PRK11462 putative transporter; Provisional

Probab=99.83  E-value=5e-18  Score=168.42  Aligned_cols=315  Identities=11%  Similarity=0.037  Sum_probs=191.2

Q ss_pred             eeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCch-HHHHHHHHHHHHHHHHHHHHhH------HHHHHH
Q 040646           97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRK-NMLFLSCLMMSVSCLLTIFSTN------MWIYSV  166 (509)
Q Consensus        97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~l~~  166 (509)
                      +..|+   +...+|.+..+.-+--++..|+.|.++||   |+||| +.++++.+..+++.+++...++      ...+.+
T Consensus        38 ~~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~  114 (460)
T PRK11462         38 DIFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI  114 (460)
T ss_pred             HhhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            46677   44578888888888889999999999998   68985 5566677888888777655542      445666


Q ss_pred             HHHHHhhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHHH-----HHhc---CCcchHHHHHHHhhHH
Q 040646          167 LRFINGFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAIA-----YINR---GSSWRRIYLYTSIPTI  237 (509)
Q Consensus       167 ~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-----~~~~---~~~wr~~f~~~~~~~~  237 (509)
                      .-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+.     .+..   ..+|+....+.+++.+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            7777788888888888889999987 78999999999999998877766552     1211   1368887777777766


Q ss_pred             HHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH
Q 040646          238 LYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI  317 (509)
Q Consensus       238 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  317 (509)
                      +..++.....+|.++     .+ +                               ++.+.+..++.+++++.++......
T Consensus       195 i~~~i~~~~~kE~~~-----~~-~-------------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~  237 (460)
T PRK11462        195 MMLAFCFFTTKERVE-----AP-P-------------------------------TTTSMREDLRDIWQNDQWRIVGLLT  237 (460)
T ss_pred             HHHHHHHhcceeccC-----CC-c-------------------------------cCCCHHHHHHHHhCChHHHHHHHHH
Confidence            655454444555321     00 0                               0001123466778887765544333


Q ss_pred             HHHHHHH----hHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc
Q 040646          318 MVTGFGI----GMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI  393 (509)
Q Consensus       318 ~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~  393 (509)
                      ++.....    ....|...+..+... ..........+..+++.++++++.||+++|+....+..+..+..+++.+.+..
T Consensus       238 ~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~  316 (460)
T PRK11462        238 IFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQ  316 (460)
T ss_pred             HHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchh
Confidence            3333322    222233333332211 11223334457778889999999999999988765544444433334343333


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-----hhhh--hhHHHHHHHHHhHhhHHHHHHHH
Q 040646          394 WTSVEIGLELVAFFSACTAFSLLLIYTLELFP-----TCVR--NSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~r--~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .........++.+++.+...+..+++.+|..+     +..|  |...+.......+|..+++.+.+
T Consensus       317 ~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g  382 (460)
T PRK11462        317 ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG  382 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222333334444444555667777655     2233  34445555566666665555443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.2e-17  Score=157.35  Aligned_cols=320  Identities=13%  Similarity=0.108  Sum_probs=224.9

Q ss_pred             eeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHhH------HHHHHHH
Q 040646           98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFSTN------MWIYSVL  167 (509)
Q Consensus        98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~  167 (509)
                      .+|+   +....|.+..+.-+--++..|+.|.++||   |+|| |+.++.+.+..++.+.++-.+++      ....++.
T Consensus        42 v~Gi---s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt  118 (467)
T COG2211          42 VFGL---SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT  118 (467)
T ss_pred             ccCC---cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence            4566   44467777777777788999999999998   6998 67778888999999999888873      4566777


Q ss_pred             HHHHhhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHH-----HHHHhc---CCcchHHHHHHHhhHHH
Q 040646          168 RFINGFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPA-----IAYINR---GSSWRRIYLYTSIPTIL  238 (509)
Q Consensus       168 r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~-----~~~~~~---~~~wr~~f~~~~~~~~~  238 (509)
                      ..+.+++.......-.++.+|..+ ++||.+..++.+.+.++|.++...     +..+.+   ..||+..-.+.+++..+
T Consensus       119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence            888899999988888999999986 689999999999999988655433     333333   35888888888888887


Q ss_pred             HHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHH
Q 040646          239 YCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIM  318 (509)
Q Consensus       239 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  318 (509)
                      ..+.+++..+|.+.    +.+.                            .++..+.+....+..+++|+.++......+
T Consensus       199 ~~l~~~~~v~ER~~----~~~~----------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l  246 (467)
T COG2211         199 LLLFCFFNVKERVV----ETQP----------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNL  246 (467)
T ss_pred             HHHHHHHHhhcccC----cccc----------------------------CcccccccHHHHHHHHHccchHHHHHHHHH
Confidence            77677776666432    0000                            000011122224556788888666655444


Q ss_pred             HHHHHHhH----hhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646          319 VTGFGIGM----VYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW  394 (509)
Q Consensus       319 ~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~  394 (509)
                      +.+.+.+.    ..|+..+.+......+...........+++.++..++.+|+|+|++..++.++.+++.+.+.+.+.++
T Consensus       247 ~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~  326 (467)
T COG2211         247 LLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGS  326 (467)
T ss_pred             HHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            44443333    33444444444333344444555566677789999999999999999999999999999999887655


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          395 TSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      ....+...++..++.+...+..|++.+|..+       .+..|...+....+.-+|..++..+.+
T Consensus       327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g  391 (467)
T COG2211         327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG  391 (467)
T ss_pred             hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555567777778888899999999864       233456667777776666665555444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.4e-19  Score=154.69  Aligned_cols=352  Identities=11%  Similarity=0.011  Sum_probs=207.4

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHH
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMWIYSVLRF  169 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~  169 (509)
                      ...+.|.++   +..+..++.+.|+....+..+++|++.||++|-|..-++-+....++.++++   ..+.+|+++++|+
T Consensus        68 ~~fk~d~ni---~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF  144 (459)
T KOG4686|consen   68 IDFKLDSNI---EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRF  144 (459)
T ss_pred             hhhhccccc---ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhe
Confidence            344445555   3448899999999999999999999999999998877776666677777765   4688999999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhc----CC---cchH--HHHHHHhhHHHH
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR----GS---SWRR--IYLYTSIPTILY  239 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~----~~---~wr~--~f~~~~~~~~~~  239 (509)
                      +.|+|.-...++...|..-|+..|+.+.++|+.....-+|..+-..+ .++.+    .+   |-..  ..+..+......
T Consensus       145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~  224 (459)
T KOG4686|consen  145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQ  224 (459)
T ss_pred             eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            99999888888999999999999999999999988888886543222 22211    11   1100  001111111111


Q ss_pred             HHHhheeecCchHHHHhcCC-HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHH
Q 040646          240 CILVRFLVRESPRWLFIQGR-KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIM  318 (509)
Q Consensus       240 ~~~~~~~~~esp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  318 (509)
                      .+...          ...+- .+.+++.+.+.   ++......+..+               . .-+ .|.+|....++.
T Consensus       225 slica----------l~lg~~D~rAerilh~e---~g~~Ge~pkLtd---------------v-~~f-~ppfw~~~iicv  274 (459)
T KOG4686|consen  225 SLICA----------LSLGLSDDRAERILHLE---EGFLGEEPKLTD---------------V-NTF-YPPFWVLVIICV  274 (459)
T ss_pred             HHHHH----------HHhhhhhhHHHHHHhhh---cCcccCCccccc---------------c-ccc-CccHHHHHHHHH
Confidence            11110          01111 11222222111   110000000000               0 011 233344444333


Q ss_pred             HHHHHHh-HhhhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646          319 VTGFGIG-MVYYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW  394 (509)
Q Consensus       319 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~  394 (509)
                      ..+.... +..-+..++.+.+|+++..+..+.+   ....+.+.+.|.++||.|++...+.+..+..+..-...++...+
T Consensus       275 ~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ls  354 (459)
T KOG4686|consen  275 LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLS  354 (459)
T ss_pred             HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhcc
Confidence            3333222 1122223455668888766554444   44556677889999999999887766655554433333322222


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc--c----chhHHHHHHHH
Q 040646          395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ--N----NFLSYGIFGLV  468 (509)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~--~----~~~~~~~~~~~  468 (509)
                      ++..+   .+.+..........|..++.+.|.++-|++.|+.+.+.++|-.+.|++.+....  +    ....+.+++.+
T Consensus       355 Py~~m---~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~  431 (459)
T KOG4686|consen  355 PYTSM---TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM  431 (459)
T ss_pred             HHHHH---HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence            33222   222233334445577888889999999999999999999999999999983221  1    12234444455


Q ss_pred             HHHHHHHHhhcc
Q 040646          469 IGLCGLFVIGLP  480 (509)
Q Consensus       469 ~~~~~~~~~~~~  480 (509)
                      ++.+..+.+.+.
T Consensus       432 aL~svgil~~~N  443 (459)
T KOG4686|consen  432 ALTSVGILFYLN  443 (459)
T ss_pred             HHHHHHHHhhee
Confidence            554444444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.82  E-value=9.4e-19  Score=173.00  Aligned_cols=322  Identities=13%  Similarity=0.127  Sum_probs=229.1

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCch-HHHHHHHHHHHHHHHHHHHH-h-------HH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRK-NMLFLSCLMMSVSCLLTIFS-T-------NM  161 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr-~~l~~~~~~~~i~~~~~~~~-~-------~~  161 (509)
                      -..+.+|+   +....|.+..+..+-.++..|+.|.++||   |+||| +.++++..+.+++.+++... +       ..
T Consensus        27 f~~~~~gl---~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~  103 (428)
T PF13347_consen   27 FYTDVLGL---SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL  103 (428)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence            34456688   55588999999999999999999999994   49975 45567888888888877765 4       23


Q ss_pred             HHHHHHHHHHhhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHH-HHH----hcC---CcchHHHHHH
Q 040646          162 WIYSVLRFINGFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAI-AYI----NRG---SSWRRIYLYT  232 (509)
Q Consensus       162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~-~~~----~~~---~~wr~~f~~~  232 (509)
                      ..+.+..++..++.........++..|..+ +++|.+..++...+..+|.++...+ ..+    ...   .+|++...+.
T Consensus       104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~  183 (428)
T PF13347_consen  104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL  183 (428)
T ss_pred             HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence            456777777899999999999999999998 5789999999988888888655444 222    222   2799999999


Q ss_pred             HhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHH
Q 040646          233 SIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALR  312 (509)
Q Consensus       233 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  312 (509)
                      +++.++..++..+..+|.++      +.+                            +++++.+....+++++++|.++.
T Consensus       184 ~iv~~v~~~i~~~~~ke~~~------~~~----------------------------~~~~~~~~~~~~~~~~~nr~~~~  229 (428)
T PF13347_consen  184 AIVGLVFFLITFFFVKERSV------EVT----------------------------EQEKKISLRDSLRSLFRNRPFRI  229 (428)
T ss_pred             HHHHHHHhhhhhheeeeccc------ccc----------------------------ccccccccccchhhhcccchHHH
Confidence            99988877777777777211      000                            00111122235778888888777


Q ss_pred             HHHHHHHHHHHHhHhhhcccccccc-CCch--HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646          313 RLSAIMVTGFGIGMVYYGMPLGLGS-LSFN--LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV  389 (509)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~  389 (509)
                      .....++.++.........+++.+. .+.+  .........+..+++.++.++++||+|+|+.+..+..+.+++.+++.+
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            6666666665554433333333332 2222  223334456778889999999999999999999999999998888887


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch-------hhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT-------CVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .+..+.+...+...+.+++.+..+...+++.+|..+.       +..|...|+.+....++..+++.+.+
T Consensus       310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            6644555555666666677777778888999998763       33477788888887777777766655

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.80  E-value=7.8e-17  Score=157.84  Aligned_cols=346  Identities=10%  Similarity=0.002  Sum_probs=194.7

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhh
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRFINGF  173 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~  173 (509)
                      .+++|+   +..+.+.+.+.+.....++.+++|+++|| + ||||+++++.++.+++.++.+..+ +...+.+...+.++
T Consensus        37 ~~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDR-ilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~i  112 (493)
T PRK15462         37 TNQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADK-VLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVC  112 (493)
T ss_pred             HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence            446788   44478899999999999999999999999 9 999999999999999988776543 22334444445556


Q ss_pred             ccchhhhhheeeeEeeccCc--ccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          174 GRATIGTCAIVLSTELVGKK--RRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       174 ~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |.|...+...++++|.+|++  +|..++++...+.++|..++|.+ +++.+..|||+.|.+.++..++ +++.+...++.
T Consensus       113 G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l-~li~~~~~~~~  191 (493)
T PRK15462        113 GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA-GLVIFLCGNRH  191 (493)
T ss_pred             hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH-HHHHHHHhhhh
Confidence            66776777788899999875  79999999999999999999999 6777788999999987654433 32322221110


Q ss_pred             hHHH-H-hcCCHHHHHHHHH-------------HHHhhcCCccccccccCcccccccccccchhHHHHHH---hchHHHH
Q 040646          251 PRWL-F-IQGRKEEAVSIIK-------------SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILV---EKKWALR  312 (509)
Q Consensus       251 p~~~-~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~  312 (509)
                      .... . .+...++......             -.....-    ..+..........  -....-+..+.   .++.-++
T Consensus       192 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~er~  265 (493)
T PRK15462        192 FTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLF----WKEWSVYALIVAT--IIGLGVLAKIYRKAENQKQRK  265 (493)
T ss_pred             hccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHh
Confidence            0000 0 0000000000000             0000000    0000000000000  00000000000   0000111


Q ss_pred             HHH-------HHHHHHHHHhHhhhcccccccc------CC--chHHHHHHHHHhhhhhHHHHHHHHhhhcCc--hh----
Q 040646          313 RLS-------AIMVTGFGIGMVYYGMPLGLGS------LS--FNLYLSVTFNALSELPASLITFFLIGKLKR--KS----  371 (509)
Q Consensus       313 ~~~-------~~~~~~~~~~~~~~~~~~~~~~------~g--~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--~~----  371 (509)
                      ++.       ...++|.........+.++.++      .|  .++.....+..+..++.+++.+++-.|..|  |.    
T Consensus       266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~  345 (493)
T PRK15462        266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIW  345 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence            111       1112222211111112222211      23  345555666666666666665555555522  21    


Q ss_pred             -HHHHHHHHHHHHHHHHHHh----cc---chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hH
Q 040646          372 -SLLGFTIMSGVCSVLCVVM----GK---IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VF  442 (509)
Q Consensus       372 -~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~  442 (509)
                       -..+++++.+++.+++.+.    ..   .+.++.+...++...+.....|+..++++++.|++.++..+|...... .+
T Consensus       346 ~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~  425 (493)
T PRK15462        346 GKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI  425 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence             2456677777776655431    11   123444444455556666777899999999999999999999987744 67


Q ss_pred             hhHHHHHHHH
Q 040646          443 GGVFSPVLVA  452 (509)
Q Consensus       443 g~~i~p~~~~  452 (509)
                      |+.++..+.+
T Consensus       426 ~~~~~g~~~~  435 (493)
T PRK15462        426 ANYLAGVIAD  435 (493)
T ss_pred             HHHHHHHHHH
Confidence            7777777665

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.80  E-value=5.2e-17  Score=149.80  Aligned_cols=345  Identities=15%  Similarity=0.078  Sum_probs=239.4

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchH-HHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHhhccchhhh
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKN-MLFLSCLMMSVSCLLTIFSTN---MWIYSVLRFINGFGRATIGT  180 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~-~l~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~  180 (509)
                      ++..++...++..+..++.+|+.|.++|+ .|+|| .+-....+..++..+..++++   ++..++...+..++.....+
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~V  134 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNV  134 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhe
Confidence            34578888999999999999999999999 88655 455555566666666777665   44555667888899888889


Q ss_pred             hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH--H-Hh----------------cCCcchHHHHHHHhhHHHHHH
Q 040646          181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA--Y-IN----------------RGSSWRRIYLYTSIPTILYCI  241 (509)
Q Consensus       181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~-~~----------------~~~~wr~~f~~~~~~~~~~~~  241 (509)
                      .-.+++.+..++++-++..++-.....+|..+.-++.  . ..                +...-|..+.+.++..++..+
T Consensus       135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL  214 (438)
T ss_pred             ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence            9999999999998888888877777777766544432  1 11                223468889999998888888


Q ss_pred             HhheeecCchHHHHhcCCH-HHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646          242 LVRFLVRESPRWLFIQGRK-EEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT  320 (509)
Q Consensus       242 ~~~~~~~esp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  320 (509)
                      ..++..||.++-   +... .......+++                           +.+++++.+++.....++..++.
T Consensus       215 Pm~~~v~~~~~~---~~~~~~~l~~g~k~L---------------------------~~t~k~i~~~~~i~~FLiA~~~~  264 (438)
T COG2270         215 PMILNVHDAEKI---SSPPPTALRNGFKEL---------------------------KSTFKEIRGRKNLVLFLIARFFY  264 (438)
T ss_pred             HHHhcccccccc---cccchHHHHHHHHHH---------------------------HHHHHHHhcccchHHHHHHHHHH
Confidence            888888876531   0011 1111112222                           23577777777655555555544


Q ss_pred             HHHHhH-hhhccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhH
Q 040646          321 GFGIGM-VYYGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTS  396 (509)
Q Consensus       321 ~~~~~~-~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (509)
                      .-+.+. ..+...+-..++|.+...   ......+..++|+++.|++.||+|.|+++..+.++..+.++...+...  ..
T Consensus       265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~~  342 (438)
T COG2270         265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--EL  342 (438)
T ss_pred             HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--cH
Confidence            444333 333333444467776544   445566888999999999999999999998888887777666666433  33


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHHHHHHHHHHHHH
Q 040646          397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSYGIFGLVIGLCG  473 (509)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~~~~~~~~~~~~  473 (509)
                      ....+.++.+...+..++..-++..+..|+++.++.+|+++..+...++++|++.+..   .......+..+.++..++.
T Consensus       343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl  422 (438)
T COG2270         343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL  422 (438)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence            3344445556667788889999999999999999999999999999999999999832   2233344445555555555


Q ss_pred             HHHhhccCC
Q 040646          474 LFVIGLPET  482 (509)
Q Consensus       474 ~~~~~~~~~  482 (509)
                      +..+..|..
T Consensus       423 ~~L~~v~~~  431 (438)
T COG2270         423 LLLLRVKVP  431 (438)
T ss_pred             hhEEeecCC
Confidence            555555544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.78  E-value=5.3e-17  Score=153.32  Aligned_cols=353  Identities=13%  Similarity=0.057  Sum_probs=206.4

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHH--HHHHH-HHHHHh----HHH-HHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMM--SVSCL-LTIFST----NMW-IYS  165 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~--~i~~~-~~~~~~----~~~-~l~  165 (509)
                      -+.++-|+   +..+.|.+.++..+...+.+|+.|.++|| +|.||-++......  ..+.. ...+.|    |++ ..+
T Consensus        33 WL~~~~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~i  108 (412)
T PF01306_consen   33 WLTQVAGL---SGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAI  108 (412)
T ss_dssp             HHHHHH------HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHH
T ss_pred             HHccccCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445788   55589999999999999999999999999 99766554433222  11222 222222    322 233


Q ss_pred             HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646          166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVR  244 (509)
Q Consensus       166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  244 (509)
                      ++-+..|+......|+.-+++.++.  ++.+.-.|-..+..++|.+++..+ |.+.+ .+-+..|++....+++..++..
T Consensus       109 ig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~  185 (412)
T PF01306_consen  109 IGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLL  185 (412)
T ss_dssp             HTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHH
Confidence            3334445555555566555555544  233445566677788888887777 44443 4557778877766666554544


Q ss_pred             eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646          245 FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI  324 (509)
Q Consensus       245 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  324 (509)
                      ...|+.++..    +                   . .     +.+..++++.+.+...+++|+|++|...+.........
T Consensus       186 ~~~~~~~~~~----~-------------------~-~-----~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y  236 (412)
T PF01306_consen  186 LLKPDVPPQA----E-------------------V-A-----DALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIY  236 (412)
T ss_dssp             SS---SSSSS------------------------S-S-----TTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HcCCcCchhh----h-------------------h-h-----cccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence            4444432100    0                   0 0     00000111112234678888998777666555544433


Q ss_pred             hHhhhccc----cccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHH
Q 040646          325 GMVYYGMP----LGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSV  397 (509)
Q Consensus       325 ~~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (509)
                      .......+    .+.++.+.+....+   .+..+.+++...+..++.+|+|.|+.++++..++.+=.+...+.  ++++.
T Consensus       237 ~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~  314 (412)
T PF01306_consen  237 DVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWV  314 (412)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHH
T ss_pred             HHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHH
Confidence            33222222    22333333333333   33336778888899999999999999999999999888877774  34455


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHH-HHHHhHhhHHHHHHHHhhcc--cchhHHHHHHHHHHHHHH
Q 040646          398 EIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMV-RQALVFGGVFSPVLVAAGRQ--NNFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~p~~~~~~~~--~~~~~~~~~~~~~~~~~~  474 (509)
                      ....-.+-++-.........-|+.+.+|++..++...+. +....+|..+.+.+.|...+  +....+.+.+.+.+...+
T Consensus       315 i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~l  394 (412)
T PF01306_consen  315 ISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTL  394 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHH
Confidence            555556666666566667788999999999988988886 45668888888888884333  334567777777665555


Q ss_pred             HH-hhccCCCC
Q 040646          475 FV-IGLPETRD  484 (509)
Q Consensus       475 ~~-~~~~~~~~  484 (509)
                      +. +.+++.++
T Consensus       395 i~~f~l~~~~~  405 (412)
T PF01306_consen  395 ISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHS--SSS
T ss_pred             HheeeecCCCc
Confidence            54 45554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.72  E-value=2.1e-15  Score=141.47  Aligned_cols=258  Identities=10%  Similarity=-0.009  Sum_probs=169.1

Q ss_pred             HHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC------------
Q 040646          156 IFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG------------  222 (509)
Q Consensus       156 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~------------  222 (509)
                      +...+|+.++++-++.|.|.+...+....++++..+++++.+.+++.+...++|..++|++ +.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            3557899999999999999999999999999999999999999999999999999999999 444421            


Q ss_pred             ----CcchHHHHHHHhhHHHHHHHh-heeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccc
Q 040646          223 ----SSWRRIYLYTSIPTILYCILV-RFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDL  297 (509)
Q Consensus       223 ----~~wr~~f~~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (509)
                          .+|+++|++.+.+.++..++. +.-+||.++      +.++.          .+               +++.   
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~~----------~~---------------~~~~---  130 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVAR----------VS---------------SGDT---  130 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------ccccc----------cc---------------cccc---
Confidence                369999997766655544332 222344210      00000          00               0000   


Q ss_pred             hhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc---CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchh
Q 040646          298 YSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS---LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKS  371 (509)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~  371 (509)
                       ...++.+++|..+...+..++..........+.+.++.+   .|.+....   ......+.++|+++++++.||+|+|+
T Consensus       131 -~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~  209 (310)
T TIGR01272       131 -TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR  209 (310)
T ss_pred             -cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence             011234555554443333333322333333334444432   46654443   34445778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646          372 SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV  451 (509)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~  451 (509)
                      .+..+..+.+++.++......  ..... ...+.+++.+..+|...+...+..|++ .+++.++. ..+.+|+.+.|.+.
T Consensus       210 ~l~~~~~l~~~~~~l~~~~~~--~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~  284 (310)
T TIGR01272       210 YLAFNAFLAVLLSIGAALTHG--YVAMW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQ  284 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC--HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHH
Confidence            888777777666554444322  22222 233455777788898888888888764 45666664 56789999999988


Q ss_pred             Hh
Q 040646          452 AA  453 (509)
Q Consensus       452 ~~  453 (509)
                      |.
T Consensus       285 G~  286 (310)
T TIGR01272       285 GS  286 (310)
T ss_pred             HH
Confidence            83

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.71  E-value=3.3e-16  Score=145.21  Aligned_cols=314  Identities=10%  Similarity=0.049  Sum_probs=203.5

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh------HHH--HHHHHHHHHhhccchhh
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST------NMW--IYSVLRFINGFGRATIG  179 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~  179 (509)
                      ..-|+.-+|++.+....+++-|+.|+ +|-|...+++..+.++|+.+-..+.      .++  ....+..+.+.+.-...
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim  158 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL  158 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence            46788999999999999999999999 9999999999999999999977653      345  77788999999988877


Q ss_pred             hhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc------CCcchH--HHHHHHhhHHHHHHHhheeecCc
Q 040646          180 TCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR------GSSWRR--IYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       180 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~------~~~wr~--~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      ........-|+++++|..+..+-.++..+|.+++.++. .+..      +..|-.  .|+..+.++.+..++..+..++.
T Consensus       159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~  238 (480)
T KOG2563|consen  159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK  238 (480)
T ss_pred             ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            77778888999999999999998888888888888874 3333      235654  35544554444344444555554


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      |+.-     +..+....                         .+.+-..+.++.++++.+....+...+.....+..+..
T Consensus       239 P~tP-----ps~s~~~~-------------------------~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~  288 (480)
T KOG2563|consen  239 PPTP-----PSASQAAL-------------------------QDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTL  288 (480)
T ss_pred             CCCC-----CchhHhhh-------------------------hcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHH
Confidence            4210     00000000                         00112346888999887544443333333333333333


Q ss_pred             cccccccCCc---hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHhc--cchhHHHHHHHHH
Q 040646          331 MPLGLGSLSF---NLYLSVTFNALSELPASLITFFLIGKLKRKSSLL-GFTIMSGVCSVLCVVMG--KIWTSVEIGLELV  404 (509)
Q Consensus       331 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  404 (509)
                      +...+...|.   .......+..+++++++++.|.+.||.+.-+... +......++.+.+....  ....+.......+
T Consensus       289 l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~  368 (480)
T KOG2563|consen  289 LNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGL  368 (480)
T ss_pred             hhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHH
Confidence            3322222233   3455666777889999999999999988655433 33333333322222211  1112222233334


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .+++....+|+..-+..|..-|..-++..|+.+..+.+-+++-.++.+
T Consensus       369 ~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~  416 (480)
T KOG2563|consen  369 LGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMG  416 (480)
T ss_pred             HHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHH
Confidence            444555666777788888866666788899998888877777777766

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.61  E-value=2.5e-12  Score=119.63  Aligned_cols=321  Identities=14%  Similarity=0.126  Sum_probs=201.9

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC-----chH-HHHHHHHHHHHHHHHHHHH-----h----
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG-----RKN-MLFLSCLMMSVSCLLTIFS-----T----  159 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G-----rr~-~l~~~~~~~~i~~~~~~~~-----~----  159 (509)
                      +..|+++   .....+.+.+...+... ..+.+|+.+|+ .+     ||. .+..|.++...+..+..++     .    
T Consensus         6 MIvEL~v---pA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~   80 (403)
T PF03209_consen    6 MIVELGV---PAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ   80 (403)
T ss_pred             HHHHhcc---HHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            4557777   55567777777766544 57899999999 77     664 4555677766666665543     2    


Q ss_pred             ---H--HH--HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHH
Q 040646          160 ---N--MW--IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLY  231 (509)
Q Consensus       160 ---~--~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~  231 (509)
                         +  .+  ...+...+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+ +.++++++-....-+
T Consensus        81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v  160 (403)
T PF03209_consen   81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV  160 (403)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence               1  12  444566788999999999999999999999999999999999999999999988 777777654333222


Q ss_pred             HH---hhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhch
Q 040646          232 TS---IPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKK  308 (509)
Q Consensus       232 ~~---~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  308 (509)
                      ..   ++.+++.++. .+-.|.+.       .+.               .         ...++++++....++++..+|
T Consensus       161 ~~~~a~i~~~l~~ia-~wg~E~r~-------~~~---------------~---------~~~~~~~~~f~~a~~~~~~~~  208 (403)
T PF03209_consen  161 IQGVALIALLLNLIA-LWGQEPRR-------SRR---------------A---------AAAERPRPPFREAWRQVWASP  208 (403)
T ss_pred             HHHHHHHHHHHHHHH-HHhcccCC-------ccc---------------c---------cCCCCCCccHHHHHHHHHhCC
Confidence            22   2222222221 22223210       000               0         011122223334677788888


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcc-ccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhh-hcCchhHHHHHHHHHHHH
Q 040646          309 WALRRLSAIMVTGFGIGMVYYGM-PLGLGSLSFNLYLSV---TFNALSELPASLITFFLIG-KLKRKSSLLGFTIMSGVC  383 (509)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~d-r~gr~~~~~~~~~~~~~~  383 (509)
                      ..++.+...++..+..+..--.+ |+--+.+|.++....   .+.+.+.++|..+.+++.. |.++++...+++....++
T Consensus       209 ~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~  288 (403)
T PF03209_consen  209 QARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALA  288 (403)
T ss_pred             ChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            87777666666655554443333 555555677765544   4455777888888887665 677888877888877777


Q ss_pred             HHHHHHhcc-chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHh----HhhHHHHHHHH
Q 040646          384 SVLCVVMGK-IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALV----FGGVFSPVLVA  452 (509)
Q Consensus       384 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~----~g~~i~p~~~~  452 (509)
                      +.++..... .+.+......++.+++.+.......+...+..++++.|..+|.-.....    +|.+++..+.+
T Consensus       289 f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  289 FALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766555322 2233333333444455555444556677788888888998888776664    44445554444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.58  E-value=9.5e-15  Score=146.93  Aligned_cols=170  Identities=12%  Similarity=0.047  Sum_probs=124.5

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHh
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLL---TIFSTNMWIYSVLRFING  172 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~G  172 (509)
                      ++++|.+.   .+.++..+...++..++.++.|+++|| +|||+++..+.++..++.+.   ...+++...++++|++.|
T Consensus       278 ~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  353 (490)
T PRK10642        278 SHNLHYSE---DHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLA  353 (490)
T ss_pred             HHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            35567633   345677788889999999999999999 99999988877654443332   223345778888999999


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHHHHHHhheeecC
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      ++.+........++.|.+|++.|++++++ ++.+. ++..++|.+ +++.+.. +|+.++++..+++++.. +..+++||
T Consensus       354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~-~~~~~~pe  431 (490)
T PRK10642        354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV-LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL-ITGVTMKE  431 (490)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHhcc
Confidence            88777777777888899999999999997 45544 444556665 6665543 57877776666666544 34456799


Q ss_pred             chHHHHhc-----CCHHHHHHHHHHHH
Q 040646          250 SPRWLFIQ-----GRKEEAVSIIKSIS  271 (509)
Q Consensus       250 sp~~~~~~-----~~~~~~~~~~~~~~  271 (509)
                      +|+|+.++     ++.+|+.+.+.+++
T Consensus       432 s~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        432 TANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             ccCCCCCCccccccchhhHHHHhhccc
Confidence            99987754     88888888888775

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.58  E-value=4.4e-15  Score=122.54  Aligned_cols=137  Identities=24%  Similarity=0.391  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646          112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG  191 (509)
Q Consensus       112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~  191 (509)
                      ..+.+.++..+++++.|++.|| +|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|
T Consensus         3 ~~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         3 LLAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            4456678889999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          192 KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       192 ~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      +++|++..++.+....+|..+++.+ +.+.+..+|++.+++.++..++..+...+..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999998 567777899999999888777766565555565

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.56  E-value=4.1e-14  Score=135.48  Aligned_cols=146  Identities=19%  Similarity=0.233  Sum_probs=119.1

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCc-hHHHHHHHHHHHHHHHHH-HHH---h-HHHHHHHHHHHHhhccchh
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGR-KNMLFLSCLMMSVSCLLT-IFS---T-NMWIYSVLRFINGFGRATI  178 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Gr-r~~l~~~~~~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~  178 (509)
                      +....|++.++..+|.+++++.+|.+..| .|. |+.++.+.++..+++++. ++.   + ..+.++++|++.|+|.| .
T Consensus        69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n  146 (488)
T KOG2325|consen   69 TATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-N  146 (488)
T ss_pred             CcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-c
Confidence            34478999999999999999999999999 776 888999999999999998 332   2 57899999999999976 4


Q ss_pred             hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc---CCc-----------chHHHHHHHhhHHHHHHHhh
Q 040646          179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR---GSS-----------WRRIYLYTSIPTILYCILVR  244 (509)
Q Consensus       179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~-----------wr~~f~~~~~~~~~~~~~~~  244 (509)
                      .....+|+++....++|.++++....+..+|..+||.++....   ..|           +..+-|+.++..++..++..
T Consensus       147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~  226 (488)
T KOG2325|consen  147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL  226 (488)
T ss_pred             HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence            6777899999988999999999999988999999988853221   111           24566778888888777777


Q ss_pred             eeecCchH
Q 040646          245 FLVRESPR  252 (509)
Q Consensus       245 ~~~~esp~  252 (509)
                      ++++|.++
T Consensus       227 ~~f~E~~~  234 (488)
T KOG2325|consen  227 FFFKEVYR  234 (488)
T ss_pred             hheeeccc
Confidence            88888753

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.55  E-value=6.8e-13  Score=125.74  Aligned_cols=368  Identities=14%  Similarity=0.054  Sum_probs=212.8

Q ss_pred             eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccc
Q 040646           99 WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRA  176 (509)
Q Consensus        99 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g  176 (509)
                      +|.+   +.+..-+.+.|..-.-+...++|+++||-+|+|+++.+|.++..+|.++.+.+.  +...+.++-.+.++|.|
T Consensus        56 Lg~~---~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~G  132 (498)
T COG3104          56 LGFD---ETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTG  132 (498)
T ss_pred             CCcC---hHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccc
Confidence            5673   334555666666666667789999999988999999999999999999999884  78889999999999999


Q ss_pred             hhhhhheeeeEeeccCc--ccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC----
Q 040646          177 TIGTCAIVLSTELVGKK--RRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE----  249 (509)
Q Consensus       177 ~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e----  249 (509)
                      ..=+...+++.|.+|++  +|-..++++.++.++|.+++|++ +++..+.||...|...++-..+.. +.+...+.    
T Consensus       133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl-~~f~~~~r~~~~  211 (498)
T COG3104         133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL-VIFLLGRRHVKG  211 (498)
T ss_pred             cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HHHHHccchhcC
Confidence            99999999999999854  47788999999999999999999 788899999999998877666533 32232221    


Q ss_pred             ch-----HHHHhcCCHHHHHHHHHHHHhh-----cCCccccccccCcccccccccccchhHHHHHHhch---HHHH----
Q 040646          250 SP-----RWLFIQGRKEEAVSIIKSISTS-----ENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKK---WALR----  312 (509)
Q Consensus       250 sp-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~----  312 (509)
                      ++     .-+..+................     .+.+.............      ...-..+.++++   .-++    
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~er~r~~~  285 (498)
T COG3104         212 IGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILI------AIIYFAEAFRSPKVFDERRRLLA  285 (498)
T ss_pred             CCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccCccHHHHHHHHH
Confidence            11     0000000000000000000000     00000000000000000      000000011100   0011    


Q ss_pred             ---HHHHHHHHHHHHh-----Hhhhcccccccc-C--CchHHHHHHHHHhhhhhHHHHHHHHhhhcCch--h-----HHH
Q 040646          313 ---RLSAIMVTGFGIG-----MVYYGMPLGLGS-L--SFNLYLSVTFNALSELPASLITFFLIGKLKRK--S-----SLL  374 (509)
Q Consensus       313 ---~~~~~~~~~~~~~-----~~~~~~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~--~-----~~~  374 (509)
                         .++...+.|....     ...|.....-++ +  ..++.....+..+.-++.+++..++..|.+++  .     -+.
T Consensus       286 ~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFa  365 (498)
T COG3104         286 AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFA  365 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHH
Confidence               1222222232221     112221111122 2  24456666666666666666666666664332  1     233


Q ss_pred             HHHHHHHHHHHHHHHh----c---c-chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH
Q 040646          375 GFTIMSGVCSVLCVVM----G---K-IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF  446 (509)
Q Consensus       375 ~~~~~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i  446 (509)
                      ++..+++.+.+++...    .   . .+.++.+...++..++-....|+..+++....|+...+..++........|+.+
T Consensus       366 lGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l  445 (498)
T COG3104         366 LGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL  445 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555555444432    1   1 223445555566667777778889999999999999999999888777777776


Q ss_pred             HHHHHHh--------hcccchhHHHHHHHHHHHHHHHH
Q 040646          447 SPVLVAA--------GRQNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       447 ~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +..+.+.        ........|..++...++..+..
T Consensus       446 ~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         446 GGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             hceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            6655551        11222334555555555444443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.51  E-value=1.8e-15  Score=150.86  Aligned_cols=354  Identities=18%  Similarity=0.165  Sum_probs=3.0

Q ss_pred             ecCCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-------
Q 040646           87 WDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-------  159 (509)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-------  159 (509)
                      |....+++|++.|++   ++.+.|++.+.+-++..+..++..++.+| ..|-|++-+|.++.+++++++++-+       
T Consensus        21 ~~~~~lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~   96 (539)
T PF03137_consen   21 YVNSSLTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGPYS   96 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCCCc
Confidence            334458999999999   55689999999999999999999999999 7888889999999999998866410       


Q ss_pred             -------------------------------------------HHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccc
Q 040646          160 -------------------------------------------NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRG  196 (509)
Q Consensus       160 -------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~  196 (509)
                                                                 -++.++++.++.|+|....++...+|+-|..++++-+
T Consensus        97 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~sp  176 (539)
T PF03137_consen   97 YEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSP  176 (539)
T ss_dssp             -------------------------------------------------------SSS----------------------
T ss_pred             cccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCc
Confidence                                                       0457888999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHH-HhcC---------------------C-cchHHHHHHHhhHHHHHHHhheeecCc-hH
Q 040646          197 QVGSIGFFCFTLGFLSLPAIAY-INRG---------------------S-SWRRIYLYTSIPTILYCILVRFLVRES-PR  252 (509)
Q Consensus       197 ~~~~~~~~~~~~G~~~~~~~~~-~~~~---------------------~-~wr~~f~~~~~~~~~~~~~~~~~~~es-p~  252 (509)
                      ..+|++.+...+|.++|.++|. .+..                     . .|..-|++.+...++.++.. ++.|+. |.
T Consensus       177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl-~~FPk~lp~  255 (539)
T PF03137_consen  177 LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL-FFFPKKLPG  255 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HcCCccCCC
Confidence            9999999999999998888853 2210                     1 37777778888777766555 444543 32


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCCccccccccCccc--ccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh-Hhhh
Q 040646          253 WLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF--EQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG-MVYY  329 (509)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~  329 (509)
                      .   ++..++.+...++.   ++  ...++.++.+.  .....-++-....+.+++||.+....+....-.+... +..|
T Consensus       256 ~---~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF  327 (539)
T PF03137_consen  256 T---SERQEEKESSERKE---ED--SDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF  327 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c---ccccchhhhhhcch---hh--hhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   00001100000000   00  00000000000  0111223345567888999876555555544444443 3344


Q ss_pred             ccccccccCCchHHHHHHHHHh----hhhhHHHHHHHHhhhcC--chhHHHHHHHHHHHHHHH---HHHhc---------
Q 040646          330 GMPLGLGSLSFNLYLSVTFNAL----SELPASLITFFLIGKLK--RKSSLLGFTIMSGVCSVL---CVVMG---------  391 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g--r~~~~~~~~~~~~~~~~~---~~~~~---------  391 (509)
                      ...++-.+++.++..+..+.++    +..+|.+++|++.+|++  .|+.+....+...+..+.   +.+..         
T Consensus       328 ~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv  407 (539)
T PF03137_consen  328 LPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGV  407 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeee
Confidence            4344445678887777666664    45578889999999975  344433333333332222   11110         


Q ss_pred             ---cc---------------------------------h----hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhh
Q 040646          392 ---KI---------------------------------W----TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNS  431 (509)
Q Consensus       392 ---~~---------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~  431 (509)
                         .+                                 .    ....+++.++..+.............-..+|+++|+.
T Consensus       408 ~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~  487 (539)
T PF03137_consen  408 TVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSF  487 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcch
Confidence               00                                 0    0001111111112222333344556668889999999


Q ss_pred             HHHHHHHHH-hHhhHHHHHHHHh
Q 040646          432 AISMVRQAL-VFGGVFSPVLVAA  453 (509)
Q Consensus       432 ~~g~~~~~~-~~g~~i~p~~~~~  453 (509)
                      +.|+...+. .+|.+-+|++.|.
T Consensus       488 AlGv~~~~~rllg~IPgPIifG~  510 (539)
T PF03137_consen  488 ALGVQWLIIRLLGFIPGPIIFGA  510 (539)
T ss_dssp             -----------------------
T ss_pred             hhhHHHHHHHhhcCcchHHHHhH
Confidence            999998776 5677788988883

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.50  E-value=1.8e-11  Score=119.13  Aligned_cols=306  Identities=15%  Similarity=0.190  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc--cchhhhhheeeeEeeccC
Q 040646          115 SFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG--RATIGTCAIVLSTELVGK  192 (509)
Q Consensus       115 ~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~e~~~~  192 (509)
                      ...+...+.++..|.++|| +|||..+.+......+..+...+.. +|.++    +.|+.  .+.......++++|....
T Consensus        70 ~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~  143 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSE  143 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccch
Confidence            4466777889999999999 9999999999999888888887766 44333    44443  344566778999999999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHH
Q 040646          193 KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSIS  271 (509)
Q Consensus       193 ~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~  271 (509)
                      ++|....++....+..+..++|.+ +......|.-.+|.+..+..++..+..+.++||+-.    +++.++         
T Consensus       144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~---------  210 (463)
T KOG2816|consen  144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ----EKERSD---------  210 (463)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC----cccccc---------
Confidence            999999999999999999999999 567777788889999998888877788889999742    000000         


Q ss_pred             hhcCCccccccccCcccccccccccchhHHHHHHh---chHHHHHHHHHHHHHHHHhHhhh-cccccc-ccCCchHHHHH
Q 040646          272 TSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE---KKWALRRLSAIMVTGFGIGMVYY-GMPLGL-GSLSFNLYLSV  346 (509)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~g~~~~~~~  346 (509)
                               .+..+....+ .........++...+   +|..+...+..++.......... ..++++ ..++++.....
T Consensus       211 ---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s  280 (463)
T KOG2816|consen  211 ---------ATLRELTPGS-LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS  280 (463)
T ss_pred             ---------ccccccCCCc-ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH
Confidence                     0000000000 000000001111111   11111111111111111111111 122333 34566655443


Q ss_pred             ---HHHHhhhhhHHHHHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646          347 ---TFNALSELPASLITF-FLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE  422 (509)
Q Consensus       347 ---~~~~~~~~~~~~~~g-~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (509)
                         ...+....++.++.. .+...+|.|+....+...-.+...+..+....+...  ....+. .......+...+..+.
T Consensus       281 ~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~--~~~v~~-~~~~~~~pa~~s~~s~  357 (463)
T KOG2816|consen  281 DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMF--AAGVVV-ALAGIVFPAIRAFASI  357 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhh--HHHHHH-HhhcchhHHHHhHHHh
Confidence               333455556666554 778888988888888888888888888854443322  222222 2334556777888888


Q ss_pred             ccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          423 LFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      ..+++.+|+++++...+..+.+.++|.+.+
T Consensus       358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~  387 (463)
T KOG2816|consen  358 LVSPEEQGKVFGIISGIEGLSGVVSPALYG  387 (463)
T ss_pred             hcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence            999999999999999999999999998887

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.49  E-value=1.1e-13  Score=136.64  Aligned_cols=144  Identities=16%  Similarity=0.157  Sum_probs=124.3

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeee
Q 040646          107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLS  186 (509)
Q Consensus       107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  186 (509)
                      .+.|++.++..++..++.+++|+++|| +|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++
T Consensus       262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  340 (420)
T PRK09528        262 RVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYI  340 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999 9999999999999999989999999999999999999999888888888999


Q ss_pred             EeeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          187 TELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       187 ~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      .|.+|++.|+...+. ++....+|.++++.+ +++.+..|||..|.+.++..++..++.++.+++.|
T Consensus       341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999887665 677788999999888 78888889999999988887765555555555543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.44  E-value=6e-12  Score=123.47  Aligned_cols=366  Identities=18%  Similarity=0.149  Sum_probs=210.1

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchHHHHHHHHHHHHHHHHHHHHh----HHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKNMLFLSCLMMSVSCLLTIFST----NMW  162 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~~l~~~~~~~~i~~~~~~~~~----~~~  162 (509)
                      .|-+++++|+   ++.+.....+...+...+- ++.|.++|- +     .||+-++++.++..++.+..+..+    +..
T Consensus        13 ~~~l~~~l~l---s~~~~~~~~~~~~lPw~~K-p~~g~lsD~-~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   13 YPFLKDDLGL---SPAQLQRLSSLASLPWSIK-PLYGLLSDS-FPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHhCchHHh-hhHHhhccc-ccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            5788899999   4447777777777777665 678999998 5     366667777777766666655533    466


Q ss_pred             HHHHHHHHHhhccchhhhhheeeeEeecc--CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646          163 IYSVLRFINGFGRATIGTCAIVLSTELVG--KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY  239 (509)
Q Consensus       163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~  239 (509)
                      ...+.-++..+|.......+-+++.|...  ++.||...+.......+|.+++..+ |.+.+..++|..|.+.+++..+.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            77777788899999999999999999884  3347788888888888999999888 67888889999998888777765


Q ss_pred             HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHH-HHH
Q 040646          240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLS-AIM  318 (509)
Q Consensus       240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  318 (509)
                      .+...+..+|.++     .+.++....       .+      +  +.+ ......++.....++.++.+..+...+ ..+
T Consensus       168 ~~~~~~~~~e~~~-----~~~~~~~~~-------~~------~--~~~-~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~  226 (433)
T PF03092_consen  168 LIVALFLLEERKV-----RPADEVFSF-------GK------E--EVP-CLFGSFREQLSELWRALQQRAIWQPILFFIF  226 (433)
T ss_pred             HHHHHHhhhhccc-----cccchhhcc-------cc------c--ccc-hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5555555554211     000000000       00      0  000 000001122334666777776665555 222


Q ss_pred             HHHHHHhH----hhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 040646          319 VTGFGIGM----VYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG  391 (509)
Q Consensus       319 ~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~  391 (509)
                      +..+....    .+|.........++++...+.   +.+++.++|..+......+..-|+++....++..+..+.-....
T Consensus       227 ~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv  306 (433)
T PF03092_consen  227 FFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV  306 (433)
T ss_pred             HHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE
Confidence            22221111    111111111122255544333   33345555555555555555666666655554444333211110


Q ss_pred             c--------chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh----hc----
Q 040646          392 K--------IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA----GR----  455 (509)
Q Consensus       392 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~----~~----  455 (509)
                      .        +..+..+.-.++........+.....+++|+.|+...|+..++...+.++|..++..+...    ..    
T Consensus       307 ~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~  386 (433)
T PF03092_consen  307 TRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD  386 (433)
T ss_pred             EEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            0        1111112222333333444455567789999999999999999988888887766655541    11    


Q ss_pred             --ccchhHHHHHHHHHHHHHHHHhhccCCC
Q 040646          456 --QNNFLSYGIFGLVIGLCGLFVIGLPETR  483 (509)
Q Consensus       456 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (509)
                        .+.....++..++.++...+..++|+.+
T Consensus       387 ~f~~l~~lili~~~~~ll~l~ll~lLp~~~  416 (433)
T PF03092_consen  387 DFSNLWLLILICSVIQLLPLPLLFLLPPQK  416 (433)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence              1122233344444444445555666644

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.39  E-value=5.3e-13  Score=131.18  Aligned_cols=142  Identities=12%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHhhccchhhhhhe
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST----NMWIYSVLRFINGFGRATIGTCAI  183 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~  183 (509)
                      ..+...++..++..++.++.|+++|| +|||+++..+.++.+++..+.....    +++.+++.+++.|++.+...+...
T Consensus       252 ~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       252 NASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999 9999999999999988877776632    346777889999999998889989


Q ss_pred             eeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcC------CcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          184 VLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRG------SSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       184 ~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~------~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      .++.|++|+++|+++.++.+ ...++|.+++|++ +.+.+.      +||+..|.+.+++.++..++..+++||+
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999997 6788999999999 566554      5799999999888888777777888876

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.37  E-value=1.4e-12  Score=134.43  Aligned_cols=140  Identities=17%  Similarity=0.074  Sum_probs=119.2

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      ..+...+..++..++.++.|+++|| +|||++++++.++.++++++.+++++...+++.+++.|++.++.++...++++|
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667779999999999999999 999999999999999999999999988888889999999888889999999999


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      ++|.++|++++|+..+...+|.+++|+++ .+.. .+...+|++.++..++.+ +...++||+.
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~-~~~~~pf~i~a~~lll~~-ll~~~LPET~  737 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG-ITKAAPILFASAALACGG-LLALKLPDTR  737 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH-HHHHhCCCCc
Confidence            99999999999999999999999999995 4544 345677777777766644 3445678873

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.36  E-value=1.7e-11  Score=122.49  Aligned_cols=272  Identities=15%  Similarity=0.131  Sum_probs=184.1

Q ss_pred             CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-----------
Q 040646           91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-----------  159 (509)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-----------  159 (509)
                      .+.+|++.|++   ++.+.|++.+.+=++..+...+..+...| .-|-+++-+|+++.+++++++++-+           
T Consensus       119 ~IttiErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~  194 (735)
T KOG3626|consen  119 VITTIERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELE  194 (735)
T ss_pred             hhhhhhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcchhhhh
Confidence            47899999999   44579999999999999999999999999 8888899999999999999987631           


Q ss_pred             H----------------------------------------H-HHHHHHHHHHhhccchhhhhheeeeEeeccCcccchh
Q 040646          160 N----------------------------------------M-WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQV  198 (509)
Q Consensus       160 ~----------------------------------------~-~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~  198 (509)
                      +                                        + ..++++.++.|+|....++...+|+-|...+++-...
T Consensus       195 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplY  274 (735)
T KOG3626|consen  195 VIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLY  274 (735)
T ss_pred             hhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHH
Confidence            0                                        2 2677789999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcC--------------------CcchHHHHHHHhhHHHHHHHhheeecCc-hHHHHhc
Q 040646          199 GSIGFFCFTLGFLSLPAIAYINRG--------------------SSWRRIYLYTSIPTILYCILVRFLVRES-PRWLFIQ  257 (509)
Q Consensus       199 ~~~~~~~~~~G~~~~~~~~~~~~~--------------------~~wr~~f~~~~~~~~~~~~~~~~~~~es-p~~~~~~  257 (509)
                      +|++.+...+|.++|.++|.+...                    -.|+.-|++.+.+.++.++.+ +++|.. |+.    
T Consensus       275 lgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~----  349 (735)
T KOG3626|consen  275 LGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKS----  349 (735)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccc----
Confidence            999999999999999888643211                    137777888888888877555 555543 321    


Q ss_pred             CCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-c
Q 040646          258 GRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-G  336 (509)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  336 (509)
                      .++    +..++.+..+++++    ..+.......+-++-+...+.+++||.+...++...+-..........+|-++ +
T Consensus       350 ~~~----~~~~~~~~~k~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~  421 (735)
T KOG3626|consen  350 QKR----KRARDLHVLKTESG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLET  421 (735)
T ss_pred             ccc----chhhhhcccccccc----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHH
Confidence            110    00000000000000    00000000111123455678888998765555554444444433333445554 4


Q ss_pred             cCCchHHHHHHHHHhh----hhhHHHHHHHHhhhcC--chhHHHHHHHH
Q 040646          337 SLSFNLYLSVTFNALS----ELPASLITFFLIGKLK--RKSSLLGFTIM  379 (509)
Q Consensus       337 ~~g~~~~~~~~~~~~~----~~~~~~~~g~l~dr~g--r~~~~~~~~~~  379 (509)
                      ++|.+++.+..+++..    ..+|.+++|++.+|+.  .|....+.++.
T Consensus       422 Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~  470 (735)
T KOG3626|consen  422 QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC  470 (735)
T ss_pred             HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence            6888888877776643    4467788899999874  34443333333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.34  E-value=4.2e-12  Score=123.57  Aligned_cols=141  Identities=12%  Similarity=0.038  Sum_probs=119.0

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNM--WIYSVLRFIN  171 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~  171 (509)
                      ...++++.   +..+.+++.+.+.++..++.++.|+++|| +|||+.+.++..+.+++.++..+.++.  ..+++..++.
T Consensus       230 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       230 PYGQSLGL---SDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            34456666   33467889999999999999999999999 999999999999988888887776643  3345667888


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHH
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTIL  238 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~  238 (509)
                      |++.+...+....++.|.+|+++|+++.++.+....+|..++|.+ +.+.+..||++.|.+.++..++
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence            888888888778889999999999999999999999999999998 6777888999999988776665

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.33  E-value=1.5e-11  Score=120.31  Aligned_cols=149  Identities=12%  Similarity=0.174  Sum_probs=118.1

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG  174 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~  174 (509)
                      +++++|+   +..+.+++.+...++..++.++.|+++|| +|||+.+..+.+...+......+.++.+.+++.+++.+++
T Consensus       243 l~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  318 (393)
T PRK15011        243 IINELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIY  318 (393)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4456777   34467888888778888899999999999 9999988877766666555555677888888899998888


Q ss_pred             cchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          175 RATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       175 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      .|...+....+..|..|+ +|+++.++++....+|..+++.+ +.+.+..||+..|++.+++.++.. +..+++||
T Consensus       319 ~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  392 (393)
T PRK15011        319 IGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL-FCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence            777777777778888874 69999999999999999999999 577777899999998777777644 44445554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.31  E-value=3.4e-10  Score=103.87  Aligned_cols=150  Identities=17%  Similarity=0.150  Sum_probs=106.6

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGR  175 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~  175 (509)
                      -+++|.   ++.|++.+....+....+..++.|.++|| +|||+.-+..+++.+++++ +-..++++.++++|++.|++.
T Consensus        61 Y~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   61 YESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHH
Confidence            356788   44589999999999999999999999999 9999999999999999996 455688999999999999999


Q ss_pred             chhhhhheeeeE-ee----ccCcccchhhhhhH-HHHHHHHHHHHHHH-HHhcCC--cchHHHHHHHhhHHHHHHHhhee
Q 040646          176 ATIGTCAIVLST-EL----VGKKRRGQVGSIGF-FCFTLGFLSLPAIA-YINRGS--SWRRIYLYTSIPTILYCILVRFL  246 (509)
Q Consensus       176 g~~~~~~~~~i~-e~----~~~~~r~~~~~~~~-~~~~~G~~~~~~~~-~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~  246 (509)
                      +..+.+--+++. |.    +|++..+..++... ...++-.+.+.+++ .+.+..  |-..+|.......++..++....
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~  215 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT  215 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence            999988877664 32    22222233333222 22223334444454 444443  34778888777776665555555


Q ss_pred             ecCc
Q 040646          247 VRES  250 (509)
Q Consensus       247 ~~es  250 (509)
                      -+|.
T Consensus       216 W~EN  219 (354)
T PF05631_consen  216 WPEN  219 (354)
T ss_pred             cccc
Confidence            5554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.31  E-value=2.3e-11  Score=120.17  Aligned_cols=156  Identities=14%  Similarity=0.065  Sum_probs=131.8

Q ss_pred             Ccceeee-eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           92 HTSIISE-WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        92 ~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      .|.+.++ +|.   +..+.|++.+...++..++.++.+++.|| .++++.+..+.++.+++.++..+.++.+.+.+..++
T Consensus       246 ~p~~~~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        246 YPALADEVWQM---GAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             hHHHHHhccCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            3444444 777   44478999999999999999999999999 888888888888888888888888888888889999


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      .|++.+...+...+++.|..|++.||++++++.....+|..+++.+ +.+.+..|++..+++.+...++.+++....+||
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            9999888778888899999999999999999999999999999998 678888889999988887777766666666676


Q ss_pred             ch
Q 040646          250 SP  251 (509)
Q Consensus       250 sp  251 (509)
                      .+
T Consensus       402 ~~  403 (417)
T PRK10489        402 LR  403 (417)
T ss_pred             cc
Confidence            53

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.30  E-value=3.3e-10  Score=106.93  Aligned_cols=337  Identities=12%  Similarity=0.016  Sum_probs=188.4

Q ss_pred             eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchh
Q 040646           99 WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATI  178 (509)
Q Consensus        99 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~  178 (509)
                      .|++.++  ...-+.-...-.+....++...+.|. .|.|++++++.+...+...+..+.++.+.+-+..+..|++.+. 
T Consensus        35 kn~T~~q--v~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-  110 (412)
T PF01770_consen   35 KNFTEEQ--VNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-  110 (412)
T ss_pred             cCCCHHH--HHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-
Confidence            5665432  22344555556677788899999999 9999999999999999999999999999999999999999775 


Q ss_pred             hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHhhHHHHHHHhheeecCchHHHH
Q 040646          179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR---GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLF  255 (509)
Q Consensus       179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~  255 (509)
                      ..+-.+|+-...|+++--++.+...+..-+|-.++.++|-++-   ..+.+....+...... ++++..+++|..++-..
T Consensus       111 evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~-~a~~~~~fLP~~~~S~~  189 (412)
T PF01770_consen  111 EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVS-LALLIALFLPMPKRSLF  189 (412)
T ss_pred             HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHcCCCCcccc
Confidence            7777899999999999999999999999999999888875433   3344555555443333 34455577887654322


Q ss_pred             hcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccc-------cchhHHHHHHhchHHHHHHHHHHHHHHHHhHhh
Q 040646          256 IQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNV-------DLYSAIKILVEKKWALRRLSAIMVTGFGIGMVY  328 (509)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  328 (509)
                      -+++.++... ..+... ++.++.+++..+.+.+.+..+.       .....+++..++|..+...+-..+...+.....
T Consensus       190 f~r~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~  267 (412)
T PF01770_consen  190 FHRKPPAEQD-ANESES-DKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVI  267 (412)
T ss_pred             eeccCccccc-cccccc-cccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHH
Confidence            2222111100 000000 0000000000000000111111       113345566667765554444444444444333


Q ss_pred             hccccccccC---CchH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040646          329 YGMPLGLGSL---SFNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLE  402 (509)
Q Consensus       329 ~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (509)
                      ++...+.++.   +...   +..-....+.+.++++..|++..++.+..-+..+......+.+++.....++.+...+..
T Consensus       268 nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~y  347 (412)
T PF01770_consen  268 NYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGY  347 (412)
T ss_pred             HHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3322222222   1111   222233345556677788888666666554444333332222222222233444444444


Q ss_pred             HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhH
Q 040646          403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVF  442 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~  442 (509)
                      ++.........++...-++.....+.-+..+|++.+...+
T Consensus       348 Iif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~  387 (412)
T PF01770_consen  348 IIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV  387 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence            4444444444455555555555556667777776655433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.29  E-value=4.9e-11  Score=117.12  Aligned_cols=135  Identities=17%  Similarity=0.220  Sum_probs=117.6

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      .++..+.+.++..++.++.|++.|| +|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4667778889999999999999999 999999999998888888888888888888899999999999888887778889


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVR  244 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  244 (509)
                      .+|+++|+++.++++....+|..+++.+ +.+.+..||+..|++.++..++..+..+
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW  386 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887777 7777888999999998887777544443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.29  E-value=3.1e-11  Score=118.97  Aligned_cols=135  Identities=18%  Similarity=0.214  Sum_probs=119.0

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      .+.+.+++.++..++.++.|+++|| +|||+.+..+..+.+++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY  338 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence            4667777788889999999999999 999999999988888888888888888889999999999999999998888889


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVR  244 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~  244 (509)
                      ..|+++||+.+++++....+|..++|.+ +.+.+..||+..|++.++..++..+..+
T Consensus       339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 5777788999999999888877654443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.28  E-value=1.9e-11  Score=120.42  Aligned_cols=143  Identities=16%  Similarity=0.096  Sum_probs=116.4

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      .|.+.++.|.   +..+.+.+.+.+.++..++.++.|+++|| +|||+.+..+.+..+++.++..+.++.+.+.+.-++.
T Consensus       243 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
T PRK11551        243 LPSLLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA  318 (406)
T ss_pred             HHHHHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3555566677   34478999999999999999999999999 9999999887777777777777777888888888889


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHH
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTIL  238 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~  238 (509)
                      |++.+...+...+++.|.+|+++|++..++.+....+|..++|.+ +.+.++. +|...++......++
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILV  387 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHH
Confidence            998888888888999999999999999999999999999999998 5666553 455555555544444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.28  E-value=5.3e-11  Score=115.86  Aligned_cols=148  Identities=14%  Similarity=0.233  Sum_probs=119.2

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGR  175 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~  175 (509)
                      .+++|.   ++.+.+++.+.......++.++.|++.|| +|||+++.++.++..+......+.++.+.+.+.+++.|++.
T Consensus       227 ~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       227 IHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777   34467888777777778888999999999 99999998887776666666667788888888999999998


Q ss_pred             chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646          176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      +...+....++.|..|+ +|+++.++++....+|..++|.+ +.+.+..||+..|++.++..++.. +...+++|
T Consensus       303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  375 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL-FCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHheecC
Confidence            88888888888898875 56799999999999999999998 677777899999999888777654 33344443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.27  E-value=2.2e-11  Score=117.20  Aligned_cols=147  Identities=23%  Similarity=0.327  Sum_probs=131.4

Q ss_pred             Ccceeee-eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646           92 HTSIISE-WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKN-MLFLSCLMMSVSCLLTIFSTNMWIYSVLRF  169 (509)
Q Consensus        92 ~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  169 (509)
                      .|.+.++ +|.   ++.+.++..+...++..++.++.|++.|| +|||+ .+..+..+..++.+...+.++.+.+.+..+
T Consensus       198 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  273 (352)
T cd06174         198 LPLYLQEVLGL---SAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL  273 (352)
T ss_pred             HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3444443 366   45578999999999999999999999999 99999 999999999999999999999999999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~  242 (509)
                      +.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+ +.+.+..+|+..+.+.+++.++..+.
T Consensus       274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL  347 (352)
T ss_pred             HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 67777889999999999888875543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.26  E-value=8.4e-11  Score=114.56  Aligned_cols=141  Identities=9%  Similarity=-0.018  Sum_probs=122.7

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING  172 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G  172 (509)
                      |...+|+|.   ++.+.|++.+...++..++.++.+++.|| +|+|+.+.++.+..++..++.+++++.+.+++.++++|
T Consensus       229 ~~~l~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g  304 (382)
T TIGR00902       229 AIYWQAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC  304 (382)
T ss_pred             HHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence            344456788   44588999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY  239 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~  239 (509)
                      +..+...+....++.+. |+++|++..++++ ...++|..+++.+ |++.+..|+ ..|++.+.+.++.
T Consensus       305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T TIGR00902       305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            99999999999999998 9999999999986 5678999999999 677787786 5567767666653

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.24  E-value=3.1e-11  Score=120.18  Aligned_cols=145  Identities=10%  Similarity=0.081  Sum_probs=115.8

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccC-CCchHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSS-LGRKNMLFL--SCLMMSVSCLLTIFSTNMWIYSVLRF  169 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-~Grr~~l~~--~~~~~~i~~~~~~~~~~~~~l~~~r~  169 (509)
                      |.+.+++|.   +..+.+++.+...++..+++++.|.++||+ +++|+...+  +.++.+++.++..+.++++.+++.++
T Consensus       265 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~  341 (455)
T TIGR00892       265 VPYAKDKGV---DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI  341 (455)
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            444556777   444789999999999999999999999971 333433333  34444555566677889999999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHHHH
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTILYC  240 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~~~  240 (509)
                      +.|++.+...+...+++.|.+|++++++..++++....+|.+++|.+ +.+.+.. +|++.|++.++..++..
T Consensus       342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 5666655 59999999888766543

>PRK10054 putative transporter; Provisional

Probab=99.23  E-value=6.1e-10  Score=108.85  Aligned_cols=169  Identities=14%  Similarity=0.054  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHhHhhhcccccc-ccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646          312 RRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC  387 (509)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~  387 (509)
                      ......++..++.......++.++ +++|.+......+.+   +..+++.++.|+++||+|||+.+..+..+..++.+.+
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            334444455555555554555544 567887766554443   5677788999999999999999988888777776666


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHH
Q 040646          388 VVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFG  466 (509)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~  466 (509)
                      .+.++  .+..+....+.+.......+....+..|..|+++|+++.|+.+...++|..++|.+.+.. ..+....+.+.+
T Consensus        91 ~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~  168 (395)
T PRK10054         91 PLVNN--VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAA  168 (395)
T ss_pred             HHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            65332  222222222333333344566778889999999999999999999999999999888732 234445566666


Q ss_pred             HHHHHHHHHH-hhccCC
Q 040646          467 LVIGLCGLFV-IGLPET  482 (509)
Q Consensus       467 ~~~~~~~~~~-~~~~~~  482 (509)
                      ++.++..+.. +++++.
T Consensus       169 ~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        169 ICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            5555554433 334443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.23  E-value=1.5e-10  Score=113.25  Aligned_cols=148  Identities=15%  Similarity=0.100  Sum_probs=115.3

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHh
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCL-LTIFSTNMWIYSVLRFING  172 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l~G  172 (509)
                      -+.+++|.   +..+.+++.+.+.++..+++++.|+++|| +|||+... +..+..++.. +....++.+.+.+..++.|
T Consensus       231 ~l~~~~g~---s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        231 FVQQVAGL---SENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHhcCC---CccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            34455677   34478899999999999999999999999 99887544 4444444433 3455677888888899999


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      ++.+...+.....+.|..| ++|++++++++....+|..+||++ +.+.++.|++..|++.+++.++..+......
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            9887777777777778766 688999999999999999999999 6788899999999998888777555544443

>PRK12382 putative transporter; Provisional

Probab=99.23  E-value=4.5e-11  Score=117.07  Aligned_cols=136  Identities=15%  Similarity=0.177  Sum_probs=119.1

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      .++..+.+.++..+++++.|++.|| +|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  329 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK  329 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4566777888889999999999999 999999999999999988888888888888889999999999888888888889


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF  245 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~  245 (509)
                      .+|+++||++.++++....+|..++|.+ +.+.++.||+..|.+.++..++..+....
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988 67888889999999988877775544433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.22  E-value=5.3e-10  Score=108.29  Aligned_cols=162  Identities=12%  Similarity=0.034  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhHhhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc
Q 040646          316 AIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK  392 (509)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~  392 (509)
                      ..++..++.......+|.+..+.+.+......+   ..++.+++.++.|+++||+|||+.+..+.++..++..+..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   86 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL   86 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555566677777777766554443   44677788899999999999999999888777776665555321


Q ss_pred             ---chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHH
Q 040646          393 ---IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGL  467 (509)
Q Consensus       393 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~  467 (509)
                         .+.+......++.+++.+...+...++..|.+|+++|+++.++.+....+|..++|.+.+..  ..+....+.+.++
T Consensus        87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~  166 (365)
T TIGR00900        87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV  166 (365)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence               13333444444555666666778889999999999999999999999999999999888732  2334444555454


Q ss_pred             HHHHHHHHHh
Q 040646          468 VIGLCGLFVI  477 (509)
Q Consensus       468 ~~~~~~~~~~  477 (509)
                      ..++..+..+
T Consensus       167 ~~~~~~~~~~  176 (365)
T TIGR00900       167 GFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=7.9e-11  Score=118.60  Aligned_cols=156  Identities=15%  Similarity=0.100  Sum_probs=119.2

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----h------H
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-----T------N  160 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-----~------~  160 (509)
                      .|.+.+++|.+.   .+.++......++..++.++.|+++|| +|||+.+.++.++.+++.++.++.     +      +
T Consensus       307 ~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (481)
T TIGR00879       307 SPTIFENAGVST---DHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG  382 (481)
T ss_pred             HHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence            456666777743   367888889999999999999999999 999999999988887777776621     1      2


Q ss_pred             HHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646          161 MWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY  239 (509)
Q Consensus       161 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~  239 (509)
                      ...+....++.+.......+....++.|.+|+++|+++.++......+|.+++|.+ +.+.++.+|++.|++.++.+++.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~  462 (481)
T TIGR00879       383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG  462 (481)
T ss_pred             HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence            33333333333332233446667778999999999999999999999999999988 67777789999999988888877


Q ss_pred             HHHhheeecCch
Q 040646          240 CILVRFLVRESP  251 (509)
Q Consensus       240 ~~~~~~~~~esp  251 (509)
                      ++...++.||++
T Consensus       463 ~i~~~~~~~~~~  474 (481)
T TIGR00879       463 LIFVYFFLPETK  474 (481)
T ss_pred             HHHHheecccCC
Confidence            766667777753

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.19  E-value=1.9e-09  Score=105.63  Aligned_cols=163  Identities=17%  Similarity=0.081  Sum_probs=111.1

Q ss_pred             HHHHHhHhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhH
Q 040646          320 TGFGIGMVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTS  396 (509)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (509)
                      ...+.......+|.+.++.+.+......   ...++..++.++.|+++||+|||+.+..+.++..++.......+  +..
T Consensus        15 ~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~--~~~   92 (392)
T PRK10473         15 YPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE--TSS   92 (392)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC--cHH
Confidence            3334444445567777788877655443   33466778889999999999999999998888887777666533  222


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHH
Q 040646          397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~  474 (509)
                      ......++.+++.+..++....+..|.+|+++|+++.++.+....+|..++|.+.+..  ..++...+.+.+++.++..+
T Consensus        93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~  172 (392)
T PRK10473         93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL  172 (392)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence            3333334444555556667788999999999999999999999899988999887732  23444555666655555444


Q ss_pred             H-HhhccCCCC
Q 040646          475 F-VIGLPETRD  484 (509)
Q Consensus       475 ~-~~~~~~~~~  484 (509)
                      + .+..+|+++
T Consensus       173 ~~~~~~~~~~~  183 (392)
T PRK10473        173 LSLFILKETRP  183 (392)
T ss_pred             HHHHHcCCCCC
Confidence            4 345566543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.18  E-value=1e-09  Score=108.83  Aligned_cols=153  Identities=14%  Similarity=0.065  Sum_probs=107.5

Q ss_pred             hhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          328 YYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      ....|.+.+++|.+......+   ..++..++.++.|++.||+|||+.+.++.++..++.++.....  +.+......++
T Consensus        43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l  120 (434)
T PRK11663         43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--SLWAFALLWVL  120 (434)
T ss_pred             HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence            344677778888886655443   4467788899999999999999999999888888877666632  23333333334


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-HhhccC
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGLPE  481 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~  481 (509)
                      .+++.+..++....+..|.+|+++|++++++.+....+|..++|.+.+..  ..++...+.+.+++.++..++ .++++|
T Consensus       121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44555556677788999999999999999999999999999999887732  234455566655554443333 344554


Q ss_pred             C
Q 040646          482 T  482 (509)
Q Consensus       482 ~  482 (509)
                      +
T Consensus       201 ~  201 (434)
T PRK11663        201 K  201 (434)
T ss_pred             C
Confidence            3

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.17  E-value=1.9e-09  Score=105.39  Aligned_cols=154  Identities=16%  Similarity=0.087  Sum_probs=108.4

Q ss_pred             hccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646          329 YGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       329 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (509)
                      -..|.+.++.|.+......+   ..++..++.++.|++.||+|||+.+..+..+..++.+.....+  +.+......++.
T Consensus        26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~  103 (385)
T TIGR00710        26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN--NIETLLVLRFVQ  103 (385)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHH
Confidence            34566777788876555433   4467788899999999999999999998888888777766643  233333344455


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH-hhccCC
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV-IGLPET  482 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  482 (509)
                      +++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+..  ..++...+.+.++..++..+.. +..||+
T Consensus       104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (385)
T TIGR00710       104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPET  183 (385)
T ss_pred             HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5555666677888999999999999999999999999999999888732  2334445555555555444443 345554


Q ss_pred             CC
Q 040646          483 RD  484 (509)
Q Consensus       483 ~~  484 (509)
                      ++
T Consensus       184 ~~  185 (385)
T TIGR00710       184 LP  185 (385)
T ss_pred             CC
Confidence            43

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.17  E-value=1.3e-09  Score=106.56  Aligned_cols=168  Identities=11%  Similarity=0.025  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646          311 LRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC  387 (509)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~  387 (509)
                      +......++..++........+....+.+.+.....   ....+...+..++.|+++||+|||+++..+..+.+++.+.+
T Consensus         6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            333333444444444444444444566666554433   33446777888999999999999999999988877766655


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc-cchhHHHHHH
Q 040646          388 VVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ-NNFLSYGIFG  466 (509)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~-~~~~~~~~~~  466 (509)
                      ....+  .   ....++.+++.+...|...+++.|.+|+++|+++.|+......+|..++|.+.+.... .....+.+.+
T Consensus        86 ~~~~~--~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~  160 (393)
T PRK11195         86 LFGIH--P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCA  160 (393)
T ss_pred             HHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44221  1   2223445566677778889999999999999999999999999999999998883322 2222333333


Q ss_pred             HHHHHHHHHHhhccCCC
Q 040646          467 LVIGLCGLFVIGLPETR  483 (509)
Q Consensus       467 ~~~~~~~~~~~~~~~~~  483 (509)
                      ...+++.+....+||.+
T Consensus       161 ~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        161 LIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHhcCCCCc
Confidence            33333333345566543

>TIGR00897 2A0118 polyol permease family

Probab=99.17  E-value=3.8e-10  Score=110.81  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=109.2

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHH-HHHHHHHHHHHHHHH-----HhHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLF-LSCLMMSVSCLLTIF-----STNMWIYS  165 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~-~~~~~~~i~~~~~~~-----~~~~~~l~  165 (509)
                      .|.+.+++|.+   ..+.+++.+...++..++.++.|+++|| +|||+.+. .+.+..+++.+...+     .++.+.+.
T Consensus       245 ~p~~~~~~g~s---~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~  320 (402)
T TIGR00897       245 LPMFVAELGFS---TSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL  320 (402)
T ss_pred             HHHHHHHcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH
Confidence            45556677874   3467888889999999999999999999 99988764 333334444333332     23567777


Q ss_pred             HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646          166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~  242 (509)
                      +..++.|++.+...+. ...+.|.. +++|+++.|+.+....+|..++|.+ +.+.+..||+..+++.++..++..++
T Consensus       321 ~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       321 IIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            8888889887776554 44556754 4689999999999999999999998 68888889999999988777665433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.17  E-value=1e-10  Score=114.58  Aligned_cols=137  Identities=16%  Similarity=0.073  Sum_probs=106.3

Q ss_pred             eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHH--HHHHH--HhHHHHHHHHHHHHh
Q 040646           97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSC--LLTIF--STNMWIYSVLRFING  172 (509)
Q Consensus        97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~G  172 (509)
                      ++++.   ++.+.+...+...++..++.++.|+++|| +|||+.+.....+..+..  +...+  .++.+.+.+..++.|
T Consensus       248 ~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (394)
T TIGR00883       248 QTLGL---SANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLA  323 (394)
T ss_pred             HhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            56676   33467888999999999999999999999 999998876555444433  22222  246777778889999


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHH
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTI  237 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~  237 (509)
                      ++.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+ +.+.++.| |+..++......+
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       324 LIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            99888999999999999999999999998 456667888889988 67777777 8887776655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.16  E-value=4e-09  Score=103.73  Aligned_cols=155  Identities=11%  Similarity=0.066  Sum_probs=110.8

Q ss_pred             hhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          328 YYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      .+..|.+.++++.+....+.+   ..++..++.+..|++.||+|||+.+..+.++..++.++..+..+  .......-++
T Consensus        28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l  105 (412)
T TIGR02332        28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG--PESLYLLRIL  105 (412)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHH
Confidence            344566677888876665444   34667788899999999999999999998888888877776433  3333344445


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--------cccchhHHHHHHHHHHHHHHH-
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--------RQNNFLSYGIFGLVIGLCGLF-  475 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-  475 (509)
                      .+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+..        ..++...+.+.++..++..++ 
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence            55666666677778899999999999999999999999999988887632        124556666666665544443 


Q ss_pred             HhhccCCCC
Q 040646          476 VIGLPETRD  484 (509)
Q Consensus       476 ~~~~~~~~~  484 (509)
                      .+++||+++
T Consensus       186 ~~~~~~~p~  194 (412)
T TIGR02332       186 WFWLDDSPD  194 (412)
T ss_pred             hhccCCCcc
Confidence            345666543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.15  E-value=1.8e-09  Score=106.23  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=92.7

Q ss_pred             ccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      ..+.+.++.|.+......   ...++..++.++.|+++||+|||+.+..+.++.+++.++..+.+  +........++.+
T Consensus        34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G  111 (405)
T TIGR00891        34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVIG  111 (405)
T ss_pred             HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence            345566777777555443   34477788999999999999999999988888888777766633  3333344445555


Q ss_pred             HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      ++.+..++...+++.|.+|+++|+.+.++.+....+|..++|.+.+
T Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~  157 (405)
T TIGR00891       112 IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS  157 (405)
T ss_pred             hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677778889999999999999999999999999999988876

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.15  E-value=1.9e-10  Score=115.19  Aligned_cols=142  Identities=19%  Similarity=0.116  Sum_probs=105.0

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHh
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT--IFSTNMWIYSVLRFING  172 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~--~~~~~~~~l~~~r~l~G  172 (509)
                      +++++|++   ..+.++..+.+.++..++.+++|+++|| +|||+.+.....+..++..+.  ...++.+.+.+.+++.|
T Consensus       285 l~~~~g~s---~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  360 (467)
T PRK09556        285 AFQELGFS---KEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG  360 (467)
T ss_pred             HHHccCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            45678884   4467899999999999999999999999 999988766554444333222  23346666778888888


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhHHHHHH-HHHHHHHH-HHHhc------------CCcchHHHHHHHhhHHH
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTL-GFLSLPAI-AYINR------------GSSWRRIYLYTSIPTIL  238 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~-~~~~~------------~~~wr~~f~~~~~~~~~  238 (509)
                      +..............|.+|++.||++.|+.+....+ |..++|.+ |++.+            ..+|+..|++..+..++
T Consensus       361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~  440 (467)
T PRK09556        361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG  440 (467)
T ss_pred             HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence            654333333334566999999999999999988886 76788777 77777            57899999888666665


Q ss_pred             HH
Q 040646          239 YC  240 (509)
Q Consensus       239 ~~  240 (509)
                      ..
T Consensus       441 ~~  442 (467)
T PRK09556        441 CI  442 (467)
T ss_pred             HH
Confidence            43

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.14  E-value=3.9e-10  Score=113.66  Aligned_cols=156  Identities=14%  Similarity=0.064  Sum_probs=114.2

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HH--HHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NM--WIYSVL  167 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~--~~l~~~  167 (509)
                      .|.+.+++|.+.+   ..++......+...++.++.|+++|| +|||+.++.+.++.+++.++.+...  +.  .....+
T Consensus       294 ~p~i~~~~g~~~~---~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~  369 (479)
T PRK10077        294 APEIFKTLGASTD---IALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  369 (479)
T ss_pred             HHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            4666677777433   34566667778888999999999999 9999999999999888887776432  11  122233


Q ss_pred             HHHHhhccch-hhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-H------HHhcCCcchHHHHHHHhhHHHH
Q 040646          168 RFINGFGRAT-IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-A------YINRGSSWRRIYLYTSIPTILY  239 (509)
Q Consensus       168 r~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~------~~~~~~~wr~~f~~~~~~~~~~  239 (509)
                      .++.+++.+. ..+....++.|.+|+++|++++++......+|..+++.+ .      ++.++.+|++.|++.++.+++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (479)
T PRK10077        370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA  449 (479)
T ss_pred             HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence            3444444333 236678899999999999999999999888888877554 2      2334678999999888887776


Q ss_pred             HHHhheeecCch
Q 040646          240 CILVRFLVRESP  251 (509)
Q Consensus       240 ~~~~~~~~~esp  251 (509)
                      .+..+++.||+.
T Consensus       450 ~~~~~~~~~e~~  461 (479)
T PRK10077        450 ALFMWKFVPETK  461 (479)
T ss_pred             HHHHHhccccCC
Confidence            666667778864

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.13  E-value=1.1e-09  Score=107.20  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=109.9

Q ss_pred             hhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          328 YYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      ....|.+.++.|.+.....   ....++..++.++.|++.||+|||+.+..+.++.+++..++.+..  +.+......++
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l   91 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--AYVSLYILRVL   91 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--CHHHHHHHHHH
Confidence            3444566667777655443   444577888999999999999999999988888888777776643  33444444455


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHH-hhccC
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFV-IGLPE  481 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  481 (509)
                      .+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+.  ...++...+.+.+++.++..+.. +..++
T Consensus        92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (399)
T TIGR00893        92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPD  171 (399)
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecC
Confidence            5566666777888999999999999999999999999999999988873  23344555666665555544443 33444


Q ss_pred             CC
Q 040646          482 TR  483 (509)
Q Consensus       482 ~~  483 (509)
                      ++
T Consensus       172 ~~  173 (399)
T TIGR00893       172 PP  173 (399)
T ss_pred             CC
Confidence            33

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.13  E-value=5.9e-10  Score=108.67  Aligned_cols=141  Identities=16%  Similarity=0.206  Sum_probs=113.4

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING  172 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G  172 (509)
                      |...++.|.   +..+.++..+...++..+++++.|++.|| +|+|+++..+..+.+++.+...  + ........++.|
T Consensus       224 p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g  296 (381)
T PRK03633        224 PLYLNHQGM---SDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG  296 (381)
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence            444445566   33467888999999999999999999999 9999999888888777665443  2 233445677888


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~  240 (509)
                      ++.....|...+++.|..|+++++...+.+....++|.+++|.+ +++.++.+|++.|.+.+...++..
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            87777889989989999998888888888888899999999998 678888899999999888777654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=4.9e-08  Score=93.95  Aligned_cols=305  Identities=15%  Similarity=0.036  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccC
Q 040646          113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGK  192 (509)
Q Consensus       113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~  192 (509)
                      .++-+....++.++.+.+.|+ .|.|+.+.++...+....+..-+ +|-+.+++.-.+.|+|.+..+..--.|++|..++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~  133 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTR  133 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence            677778888999999999999 99999999999998887777665 4567788889999999999999999999999999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHhcC---------Ccch-H----------HHHHHHhhHHH--HHHHhheeecCc
Q 040646          193 KRRGQVGSIGFFCFTLGFLSLPAIAYINRG---------SSWR-R----------IYLYTSIPTIL--YCILVRFLVRES  250 (509)
Q Consensus       193 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~---------~~wr-~----------~f~~~~~~~~~--~~~~~~~~~~es  250 (509)
                      +.+.+..++.......+.++|..+-.+...         .+-+ .          ...+.+++..+  +.+....+.|.+
T Consensus       134 ~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~  213 (461)
T KOG3098|consen  134 ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK  213 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc
Confidence            999999999988888888888766322110         1111 1          11111111111  111222222221


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      . .      ..+.+..                        +....+......+++++++........+..++...+....
T Consensus       214 ~-~------~~~~~~~------------------------~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~i  262 (461)
T KOG3098|consen  214 D-V------VNCKSSS------------------------ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISI  262 (461)
T ss_pred             c-h------hhhhhhc------------------------cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhc
Confidence            0 0      0000000                        0000001112334555655433333333332222221111


Q ss_pred             cccc--cc-cCCchH----HHHHHHHHhhhhhHHHHHHHHhhh---cCchhHHHHHHHHHHHHHHHHHHh-ccc------
Q 040646          331 MPLG--LG-SLSFNL----YLSVTFNALSELPASLITFFLIGK---LKRKSSLLGFTIMSGVCSVLCVVM-GKI------  393 (509)
Q Consensus       331 ~~~~--~~-~~g~~~----~~~~~~~~~~~~~~~~~~g~l~dr---~gr~~~~~~~~~~~~~~~~~~~~~-~~~------  393 (509)
                      .|..  .. ..+.+.    .......+++.+.+.+..+.+.+|   +||++++.++..+..+.+++.... +..      
T Consensus       263 ypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t  342 (461)
T KOG3098|consen  263 YPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT  342 (461)
T ss_pred             cchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC
Confidence            1211  11 223332    233445557777777777777655   688888888777776666555442 111      


Q ss_pred             ---------hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646          394 ---------WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV  451 (509)
Q Consensus       394 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~  451 (509)
                               .........++.+++-....+..+.++...+ ++.|..+.++...-..++..+.-+..
T Consensus       343 ~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  343 DSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             cccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence                     1223333344455555666667788888888 45678888877766666665443333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.12  E-value=1.8e-09  Score=103.97  Aligned_cols=155  Identities=13%  Similarity=0.118  Sum_probs=111.1

Q ss_pred             HHHHHHhHhhhccc-cccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646          319 VTGFGIGMVYYGMP-LGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW  394 (509)
Q Consensus       319 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~  394 (509)
                      +..+.........| .+.+++|.+....   .....++..++.++.|+++||+|||+.+..+.++.+++.++..+. .+ 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~-   84 (352)
T PF07690_consen    7 LSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-SN-   84 (352)
T ss_dssp             HHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-CC-
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-hh-
Confidence            33344444444455 5667777665443   344457788899999999999999999999988888884444432 22 


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHH
Q 040646          395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLC  472 (509)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~  472 (509)
                      .+..+...++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+...  .+....+.+.+++.++.
T Consensus        85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~  164 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA  164 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred             HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence            3344555556666667778889999999999999999999999999999999999998433  23445677777776666


Q ss_pred             HHH
Q 040646          473 GLF  475 (509)
Q Consensus       473 ~~~  475 (509)
                      .++
T Consensus       165 ~il  167 (352)
T PF07690_consen  165 AIL  167 (352)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.12  E-value=2.8e-09  Score=106.07  Aligned_cols=117  Identities=23%  Similarity=0.296  Sum_probs=98.4

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhccchhhhhheeee
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-TNMWIYSVLRFINGFGRATIGTCAIVLS  186 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i  186 (509)
                      +.+++.+...++..++.+++++++|| +|+|+++..+.++.+++.++..+. ++.+.+.+..++.|++.+...+...+++
T Consensus       258 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (437)
T TIGR00792       258 LFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALV  336 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888899999999999999999 999999999998888887777665 4667777888899999999999989998


Q ss_pred             Eeecc-------CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcc
Q 040646          187 TELVG-------KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSW  225 (509)
Q Consensus       187 ~e~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~w  225 (509)
                      +|..+       ++++|...++.+....+|..+++.+ +.+.+..||
T Consensus       337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88865       4567999999999999999999888 666554444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.11  E-value=8.2e-09  Score=100.91  Aligned_cols=150  Identities=15%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             cccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      +|.+.++.|.+......   ...++..++.++.|.+.||+|||+.+..+.++.+++.++..+.  ++.+..+..-++.++
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~  120 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLGL  120 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHHH
Confidence            45566778887665544   3446777889999999999999999999999988877776663  334444444455556


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH-hhccCC
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV-IGLPET  482 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~  482 (509)
                      +.+...+....++.|.+|+++|+.+.++......+|..++|.+.+...  .++...+.+.+++.++..+.. ...||.
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            666677888889999999999999999999999999999998887332  344455555555444433332 234553

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.11  E-value=6.1e-09  Score=101.57  Aligned_cols=163  Identities=10%  Similarity=0.005  Sum_probs=112.2

Q ss_pred             HHHHHHhHhhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchh
Q 040646          319 VTGFGIGMVYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWT  395 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (509)
                      ............+|.+.+++|.+....   .....++..++.++.|++.||+|||+.+..+..+.+++.++..+.+  +.
T Consensus        14 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~--~~   91 (382)
T PRK10091         14 GLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS--SY   91 (382)
T ss_pred             HHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC--cH
Confidence            333333344445577777888775544   3445578889999999999999999999999988888887776643  33


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHH
Q 040646          396 SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCG  473 (509)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~  473 (509)
                      +.....-++.+++.+...+.......|.+|+++|+.++++......+|..++|.+.+..  ..++...+.+.++..++..
T Consensus        92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  171 (382)
T PRK10091         92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL  171 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence            33344444555555555566677888999999999999999888889998888887632  2344556666666554444


Q ss_pred             HH-HhhccCCC
Q 040646          474 LF-VIGLPETR  483 (509)
Q Consensus       474 ~~-~~~~~~~~  483 (509)
                      +. ..++||.+
T Consensus       172 ~~~~~~lp~~~  182 (382)
T PRK10091        172 ASIYFWVPDIR  182 (382)
T ss_pred             HHHHHhCCCCC
Confidence            33 34566643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.10  E-value=2.2e-09  Score=108.63  Aligned_cols=136  Identities=14%  Similarity=0.162  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646          114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN----MWIYSVLRFINGFGRATIGTCAIVLSTEL  189 (509)
Q Consensus       114 s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~----~~~l~~~r~l~G~~~g~~~~~~~~~i~e~  189 (509)
                      ....++..++.++.++++|| +|||++++++..+.+++.++.++..+    ...+...-+...++.....+....+.+|.
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~  420 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEV  420 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhcc
Confidence            34455667788899999999 99999998888887777666654321    11111111111222222345566778999


Q ss_pred             ccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC----------CcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          190 VGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG----------SSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~----------~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      +|.+.|+++.++.+....+|.+++|.+ +++.+.          .++...|++.++..++..+ ..+++||+.
T Consensus       421 ~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~  492 (502)
T TIGR00887       421 FPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETK  492 (502)
T ss_pred             CchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH-HheEeccCC
Confidence            999999999999999999999999987 666552          3456677777777776544 457889974

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.09  E-value=9.4e-09  Score=100.70  Aligned_cols=166  Identities=11%  Similarity=0.017  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhHhhhccccc-cccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646          314 LSAIMVTGFGIGMVYYGMPLG-LGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV  389 (509)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~  389 (509)
                      +...++..++....+..++.+ .++.|.+....+.+.+   +...+..++.|+++||+|||+.+..+..+.+++.+.+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            444445555555545444443 4667888777666555   444556788999999999999999999988888877766


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHHHH
Q 040646          390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFGLV  468 (509)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~~~  468 (509)
                      .+  +.+......++.+++.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.+.. ..+....+.+.++.
T Consensus        96 ~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~  173 (400)
T PRK11646         96 AH--EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVL  173 (400)
T ss_pred             hc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33  2333333334444455555567778889999999999999999999999999999988733 33344555555555


Q ss_pred             HHHHHHH-HhhccC
Q 040646          469 IGLCGLF-VIGLPE  481 (509)
Q Consensus       469 ~~~~~~~-~~~~~~  481 (509)
                      .++..++ .+..|+
T Consensus       174 ~~~~~i~~~~~~~~  187 (400)
T PRK11646        174 FVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHhCCc
Confidence            4444433 234454

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.9e-09  Score=100.20  Aligned_cols=152  Identities=11%  Similarity=0.025  Sum_probs=119.9

Q ss_pred             hhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          328 YYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      ....|.+.++.+++....+.+   ..+..-++-++.|.++||.+.|..+..+++++++..+++.+.+  +.....++..+
T Consensus        49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--s~~~~~~l~~l  126 (448)
T COG2271          49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--SLFLFAVLWVL  126 (448)
T ss_pred             hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--HHHHHHHHHHH
Confidence            344677888888886665544   4466678999999999999999999999999999999998843  45555666677


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH--Hh--hcccchhHHHHHHHHHHHHHHHHh-hc
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV--AA--GRQNNFLSYGIFGLVIGLCGLFVI-GL  479 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~  479 (509)
                      .+.+.+..+|.+...+..-+|++.||+..++-|+..++|+.+.|.+.  +.  ...+....|++-++++++.+++.+ ..
T Consensus       127 ng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             HHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            77888888999999999999999999999999999999999988888  52  223555667777777766666654 44


Q ss_pred             cC
Q 040646          480 PE  481 (509)
Q Consensus       480 ~~  481 (509)
                      ++
T Consensus       207 rd  208 (448)
T COG2271         207 RD  208 (448)
T ss_pred             CC
Confidence            43

>TIGR00895 2A0115 benzoate transport

Probab=99.08  E-value=4e-09  Score=103.45  Aligned_cols=155  Identities=16%  Similarity=0.077  Sum_probs=106.6

Q ss_pred             HhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040646          326 MVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLE  402 (509)
Q Consensus       326 ~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (509)
                      ...+..|.+.++.|.+......   ...++.+++.++.|+++||+|||+.+..+.++..++.++.....  +.+......
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  112 (398)
T TIGR00895        35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT--NVTQLLILR  112 (398)
T ss_pred             HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHH
Confidence            3445567777888877655443   34467788899999999999999999988888777776666532  233333334


Q ss_pred             HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-Hhhc
Q 040646          403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGL  479 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~  479 (509)
                      ++.+++.+...+...++..|.+|++.|+++.++.+....+|..++|.+.+..  ..+....+.+.+++.++..++ ..++
T Consensus       113 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  192 (398)
T TIGR00895       113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFL  192 (398)
T ss_pred             HHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhC
Confidence            4444555566778889999999999999999999999999999999888732  223334444444333333333 3455


Q ss_pred             cCC
Q 040646          480 PET  482 (509)
Q Consensus       480 ~~~  482 (509)
                      |++
T Consensus       193 ~~~  195 (398)
T TIGR00895       193 PES  195 (398)
T ss_pred             CCC
Confidence            554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.08  E-value=1.6e-09  Score=108.10  Aligned_cols=145  Identities=20%  Similarity=0.255  Sum_probs=128.0

Q ss_pred             Cccee-eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646           92 HTSII-SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI  170 (509)
Q Consensus        92 ~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  170 (509)
                      +|.+. +++|.   ++...|++.+++.+|..+|+++.+++.+| +++++.+..+.++++++.+..+++++.+..++.-++
T Consensus       241 lPl~a~~~l~~---~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l  316 (524)
T PF05977_consen  241 LPLFARDVLGG---GASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSPSFWLALIALFL  316 (524)
T ss_pred             hhHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34443 46777   45589999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~  240 (509)
                      .|++.....+...+.+.+..|++.|||+++++.+....+..+|.++ |.+.+..|-+..+.+.++..++..
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            9999999888889999999999999999999999999999999988 778888899999888776555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.08  E-value=9.2e-09  Score=102.62  Aligned_cols=153  Identities=11%  Similarity=-0.034  Sum_probs=99.3

Q ss_pred             hccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHH
Q 040646          329 YGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK--IWTSVEIGLEL  403 (509)
Q Consensus       329 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  403 (509)
                      +..|++.++ +.+......   ...++..++.++.|+++||+|||+++..+.++.+++.+.+.+...  .+....+...+
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  128 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  128 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence            345666665 777655443   344777788999999999999999999998888887776665421  12223333334


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhH-HHHHHHH-h-hcccchhHHHHHHHHHHHHHHH-Hhhc
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGV-FSPVLVA-A-GRQNNFLSYGIFGLVIGLCGLF-VIGL  479 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~-i~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~  479 (509)
                      +.+++.+..++.......|.+|++.|+++.|+.+....+|+. .+|.+.. . ...++...+.+.+++.++..++ .+++
T Consensus       129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~  208 (452)
T PRK11273        129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMM  208 (452)
T ss_pred             HHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444455555566667778899999999999999888888864 4555432 1 1224445566665555544333 3455


Q ss_pred             cCC
Q 040646          480 PET  482 (509)
Q Consensus       480 ~~~  482 (509)
                      +|+
T Consensus       209 ~~~  211 (452)
T PRK11273        209 RDT  211 (452)
T ss_pred             cCC
Confidence            554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.07  E-value=3.4e-09  Score=105.29  Aligned_cols=152  Identities=13%  Similarity=0.024  Sum_probs=99.5

Q ss_pred             ccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK--IWTSVEIGLELV  404 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  404 (509)
                      ..|...+ .|.+......   ...++..++.++.|+++||+|||+.+..+.++.+++.+.+...+.  .+........++
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  127 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL  127 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            3455444 4777655443   344677788899999999999999988888777777666554321  122222222333


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh-h--cccchhHHHHHHHHHHHHHHH-Hhhcc
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA-G--RQNNFLSYGIFGLVIGLCGLF-VIGLP  480 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~~~~~  480 (509)
                      .+++.+..++.....+.|.+|+++|++++++.+....+|+.++|.+.+. .  ..++...+.+.+++.++..+. .++++
T Consensus       128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4444455556667788899999999999999999999999888876552 1  223455666666665554433 34455


Q ss_pred             CC
Q 040646          481 ET  482 (509)
Q Consensus       481 ~~  482 (509)
                      |+
T Consensus       208 ~~  209 (438)
T TIGR00712       208 DT  209 (438)
T ss_pred             CC
Confidence            43

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.06  E-value=2e-09  Score=105.49  Aligned_cols=135  Identities=15%  Similarity=0.174  Sum_probs=114.7

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLST  187 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  187 (509)
                      ..|.+.+...+...++.+..|++.|| +|||+.+.++.++.+++..+...+++.+.+++.+++.|++.+........++.
T Consensus       255 ~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  333 (396)
T TIGR00882       255 VFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT  333 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888888999999999999999 99999999999999988888788889998999999999997776666667777


Q ss_pred             eeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646          188 ELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV  243 (509)
Q Consensus       188 e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~  243 (509)
                      +..+++.++...+. ++....+|..+++.+ |++.+..||+..|.+.++..++..+..
T Consensus       334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            77888888777766 677889999999988 678888899999999888887765443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.05  E-value=5.3e-09  Score=103.72  Aligned_cols=128  Identities=13%  Similarity=0.141  Sum_probs=96.9

Q ss_pred             HhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646          324 IGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG  400 (509)
Q Consensus       324 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (509)
                      .....+..|.+.++.+.+.....   ....++..++.++.|+++||+|||+.+..+.++.+++.+...+..  +.+....
T Consensus        34 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~  111 (426)
T PRK12307         34 FMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTL  111 (426)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence            33445556676777887755443   344577788999999999999999999999988888877766633  3333444


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .-++.+++.+..++....+..|.+|+++|+++.++......+|.+++|.+.+.
T Consensus       112 ~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307        112 SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            44555566666777888899999999999999999999889999998887763

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.05  E-value=8e-09  Score=100.62  Aligned_cols=150  Identities=15%  Similarity=0.159  Sum_probs=105.8

Q ss_pred             cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      +|.+.++++.+.....   ....++..++.++.|++.||+|||+.+..+.++.+++...+....  +........++.++
T Consensus        14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~   91 (377)
T PRK11102         14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQLIYMRFLHGL   91 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHH
Confidence            4555667777765544   344467788899999999999999999999888888877776643  23333333444445


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-HhhccCC
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGLPET  482 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  482 (509)
                      +.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+..  ..+....+.+.+.+.++..+. .+..+|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102         92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            55556667788999999999999999999999999999999887732  224445566655555554444 3455654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.05  E-value=1.1e-09  Score=107.00  Aligned_cols=153  Identities=13%  Similarity=0.101  Sum_probs=116.4

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRFIN  171 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~  171 (509)
                      |.+.+++|.   +..+.|...+.+.++..++.++.|++.|| +|||+.+..+..+..++..+....+ +...+  .-++.
T Consensus       229 p~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~  302 (393)
T PRK09705        229 PAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC  302 (393)
T ss_pred             HHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence            444456777   44478999999999999999999999999 9999999888887777766554333 22222  23456


Q ss_pred             hhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHHHhheeec
Q 040646          172 GFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCILVRFLVR  248 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~  248 (509)
                      |++.+...+.......+..+ +++|++..++.+....++..++|.+ +++.+..| |+..|++.++.+++..+....+.|
T Consensus       303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888777777666667664 5789999999999999999999988 67776654 788888877777776666667778


Q ss_pred             Cch
Q 040646          249 ESP  251 (509)
Q Consensus       249 esp  251 (509)
                      |++
T Consensus       383 ~~~  385 (393)
T PRK09705        383 ARF  385 (393)
T ss_pred             ccc
Confidence            764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.05  E-value=2.5e-09  Score=104.29  Aligned_cols=136  Identities=9%  Similarity=-0.024  Sum_probs=112.3

Q ss_pred             eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 040646           97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA  176 (509)
Q Consensus        97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g  176 (509)
                      +|.|.   +..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+
T Consensus       233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  308 (382)
T PRK11128        233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT  308 (382)
T ss_pred             HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            45677   34468889898889999999999999999 999999999999999988888889999999999999999999


Q ss_pred             hhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHH
Q 040646          177 TIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTIL  238 (509)
Q Consensus       177 ~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~  238 (509)
                      ...+....++.+. +++++++..+.++ ....+|..++|.+ |.+.+..|+ ..++..++..++
T Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            9888888888886 5666788888876 5567788899998 577777777 456655555544

>TIGR00898 2A0119 cation transport protein

Probab=99.04  E-value=4.2e-09  Score=106.87  Aligned_cols=148  Identities=17%  Similarity=0.116  Sum_probs=108.4

Q ss_pred             ccccccCCch---HH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646          332 PLGLGSLSFN---LY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       332 ~~~~~~~g~~---~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (509)
                      +...++.+.+   ..   ....+..++.+++.++.|+++||+|||+.+..+.++..++.++..+.+  +.+......++.
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~  190 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFRLLV  190 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHH
Confidence            4455566665   33   344555688889999999999999999999998888888777766633  344444445556


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPET  482 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (509)
                      +++.+...+....++.|.+|+++|+.+.++......+|.+++|.+...... +...+.+.++..++..+..+++||+
T Consensus       191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-wr~~~~~~~i~~~~~~~~~~~~~es  266 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-WRWLQLAVSLPTFLFFLLSWFVPES  266 (505)
T ss_pred             HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            666667778889999999999999999999988889999998888764333 4455666666555555555667764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.04  E-value=9.2e-09  Score=103.12  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=94.4

Q ss_pred             cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      .|.+.+++|.+.....   ....++..++.++.|+++||+|||+.+..+.++.+++.++..+..+  ........++.++
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s--~~~l~~~r~l~G~  136 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS--ATGFIAVRFFIGF  136 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHH
Confidence            4566777888655443   3334667788899999999999999998888777777666665332  2222222233333


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH----h-h------cccchhHHHHHHHHHHHHHHHH
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA----A-G------RQNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~----~-~------~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +.+.. .....++.|.+|+++|+.++|+.+....+|..+++.+..    . .      ..++...+.+.+++.++..++.
T Consensus       137 ~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~  215 (476)
T PLN00028        137 SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILV  215 (476)
T ss_pred             HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            33332 334456789999999999999998776666665544432    1 1      1245566777777666555554


Q ss_pred             hhcc
Q 040646          477 IGLP  480 (509)
Q Consensus       477 ~~~~  480 (509)
                      ++++
T Consensus       216 ~~~~  219 (476)
T PLN00028        216 LTLG  219 (476)
T ss_pred             HHHc
Confidence            4444

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.04  E-value=1e-08  Score=103.93  Aligned_cols=125  Identities=13%  Similarity=0.130  Sum_probs=94.6

Q ss_pred             hhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646          327 VYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL  403 (509)
Q Consensus       327 ~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (509)
                      .....|.+.++++.+.....   ....++..++.++.|++.||+|||+.+..+.++.+++.+.+.+..  +.+......+
T Consensus        39 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~  116 (496)
T PRK03893         39 ITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARL  116 (496)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence            33445666677887765543   334467778899999999999999999988888888777766632  3333344444


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      +.+++.+..++....+..|.+|++.|+.+.++......+|..++|.+.+.
T Consensus       117 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  166 (496)
T PRK03893        117 VIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL  166 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566677788899999999999999999999999999999988873

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.04  E-value=1.2e-07  Score=89.77  Aligned_cols=323  Identities=12%  Similarity=0.031  Sum_probs=169.3

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      .+.+.-+-.+...+.-+.+.++.+| +..+.=.....++..++.++.++++|.+.=+++-++.+++.|........+.. 
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence            3556666666777777788888898 77555556666778889999999999999999999999999998888888644 


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHH
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSW--RRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSI  266 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~w--r~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~  266 (509)
                      .+++    ...+-+..|.+.+.++|+..-..+...++  |..+++...+.++..+..++.+|.++..    ...++.   
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~----~~~~~~---  207 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTN----RPYQES---  207 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccccc----CCCccc---
Confidence            4543    35778888888888888887433322444  7777777766655554445555543210    000000   


Q ss_pred             HHHHHhhcCCccccccccCcccccccccccchhHHHHHHh-chHHHHHHHHHHHHHHHHhHhhhcc-c-cccccCCchHH
Q 040646          267 IKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE-KKWALRRLSAIMVTGFGIGMVYYGM-P-LGLGSLSFNLY  343 (509)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~  343 (509)
                             +.+++.+++..+.+.+.++.+...+.+.++-++ -+...+.++-.++.++....+..++ + ..+.....+..
T Consensus       208 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r  280 (402)
T PF02487_consen  208 -------ESEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPR  280 (402)
T ss_pred             -------CCCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHH
Confidence                   000000000000000000111111112222111 1222223334444555444443332 1 12222222222


Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH---h-ccchhHHHHHHHHHHHHHHHHHhHHHHhh
Q 040646          344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV---M-GKIWTSVEIGLELVAFFSACTAFSLLLIY  419 (509)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (509)
                      ...-..++..=+|.+++---...+.-|++.+.. ++..+-++++.+   . ..++.+..+.+.+.-+...+..+...+..
T Consensus       281 ~~Y~~Y~~~YQ~GVFISRSS~~~~rir~lwils-~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  281 DQYRWYQLLYQLGVFISRSSLPFFRIRRLWILS-LLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHHHHhhhhcceeeeehhhHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            222222222223333332111222223332222 222222222111   1 11223333344444445556666666777


Q ss_pred             cccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          420 TLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       420 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      +.|..|+++|..++|.......+|..++.++.-
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            788889999999999999888888877776653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK09952 shikimate transporter; Provisional

Probab=99.04  E-value=3.7e-09  Score=104.91  Aligned_cols=150  Identities=16%  Similarity=0.181  Sum_probs=103.7

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHH
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----TNMWIYSVLRFIN  171 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~  171 (509)
                      ++++|.+.+   ....+.....+...++.++.|+++|| +|||+++..+.++..++.+.....    ++.+.+++..++.
T Consensus       278 ~~~~g~s~~---~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  353 (438)
T PRK09952        278 TQNLGLPRE---LFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA  353 (438)
T ss_pred             HHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            345666322   33344445566677888999999999 999999988877665554433221    2344555566777


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcC--CcchHHHHHHHhhHHHHHHHhheee
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRG--SSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      |++.+...+...+++.|.+|++.|+...++.. .+..+|..++|.+ +++.+.  .+|+..+.+.++..++..+. .+.+
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~  432 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHc
Confidence            88888888888899999999999998888854 4455888888888 566553  35888888777777665433 3445


Q ss_pred             cCc
Q 040646          248 RES  250 (509)
Q Consensus       248 ~es  250 (509)
                      +|+
T Consensus       433 ~~~  435 (438)
T PRK09952        433 KDN  435 (438)
T ss_pred             ccc
Confidence            654

>PRK10504 putative transporter; Provisional

Probab=99.03  E-value=1.4e-08  Score=101.99  Aligned_cols=152  Identities=11%  Similarity=0.015  Sum_probs=106.5

Q ss_pred             HHHhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646          322 FGIGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVE  398 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (509)
                      +.........|.+.+++|.+.....   ....++..++.++.|+++||+|||+.+..+..+..++.+...+.  ++....
T Consensus        24 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l  101 (471)
T PRK10504         24 LDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNEL  101 (471)
T ss_pred             HhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHH
Confidence            3344445567888888888866543   33346667888999999999999999988877777776665553  233333


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH
Q 040646          399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF  475 (509)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      +...++.+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+..  ..++.+.|.+......+..+.
T Consensus       102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~  180 (471)
T PRK10504        102 LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIA  180 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            44445555666666777888899999999999999999999999999999988732  233344555554444444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.03  E-value=4.1e-09  Score=105.27  Aligned_cols=155  Identities=8%  Similarity=0.003  Sum_probs=102.8

Q ss_pred             HHHhHhhhcccccccc---CCchHHHHHHH---HHhhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646          322 FGIGMVYYGMPLGLGS---LSFNLYLSVTF---NALSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIW  394 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~  394 (509)
                      ++.......++.++++   +|.+......+   ..+...++.+++|+++|| +|||+++..+.++.+++.+++.+..  +
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~--~  101 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI--Y  101 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc--c
Confidence            4444444445666543   67776555433   446778899999999999 8999999999998888877776633  2


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhh---hhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHH
Q 040646          395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCV---RNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVI  469 (509)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~  469 (509)
                      .........+.+++.+...+...++..+.+|++.   |+++.++.+...++|..++|.+.+...  .++...|.+.++..
T Consensus       102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~  181 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGM  181 (475)
T ss_pred             HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            2222222233334444555677788888888653   888999999999999999999988432  24455565555544


Q ss_pred             HHHHHHHhh
Q 040646          470 GLCGLFVIG  478 (509)
Q Consensus       470 ~~~~~~~~~  478 (509)
                      +++.+..++
T Consensus       182 ~~~~l~~~~  190 (475)
T TIGR00924       182 VIGLLTFFA  190 (475)
T ss_pred             HHHHHHHHH
Confidence            444443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.03  E-value=2.2e-08  Score=98.59  Aligned_cols=152  Identities=10%  Similarity=0.078  Sum_probs=103.6

Q ss_pred             cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      +|...++++.+.....   .+..++..++.++.|+++||+|||+++..+..+..++.++.....  +....+..-++.++
T Consensus        39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~Gi  116 (413)
T PRK15403         39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT--SMTQFLIARFIQGT  116 (413)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence            3445556666654433   334477778899999999999999999998888888777766633  33333333344444


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH-hhccCCCC
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV-IGLPETRD  484 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  484 (509)
                      +.+...+....+..|.+|++.+++++++.+....+|..++|.+.+..  ..++...|.+.++..++..+.. +.+||+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            44444455667888999999999999999999999999998887732  2345566666666665555443 45677543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.02  E-value=3e-08  Score=97.57  Aligned_cols=151  Identities=11%  Similarity=0.016  Sum_probs=102.3

Q ss_pred             cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      ++.+.++++.+.....   ....++..++.++.|.++||+|||+.+..+..+..++.+.....+  +.+..+...++.+.
T Consensus        36 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~  113 (406)
T PRK15402         36 MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--SIEQFTLLRFLQGI  113 (406)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHh
Confidence            4555677777765543   344467778889999999999999999988888777777666533  23333333344444


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFV-IGLPETR  483 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  483 (509)
                      +.+...+.......|.+|++.|.++.++......++..++|.+.+.  ...++...+.+.+++.++..+.. ...||++
T Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        114 GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4445556677888899999999999998888878888888888763  22344455666666555554433 3456554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.00  E-value=1.1e-08  Score=103.42  Aligned_cols=159  Identities=17%  Similarity=0.127  Sum_probs=112.0

Q ss_pred             HHHhHhhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646          322 FGIGMVYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVE  398 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (509)
                      +.........|.+.+++|.+....   .....++..++.++.|++.||+|||+.+..+.++..++.++....+  +....
T Consensus        16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l   93 (485)
T TIGR00711        16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--NLELM   93 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC--CHHHH
Confidence            334445556677888888765443   4445578888999999999999999999999888888877766533  33344


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH
Q 040646          399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +...++.+++.+...+....++.|.+|++.|+++.++......+|..++|.+.+...  .++.+.+.+.+.+.++..++.
T Consensus        94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~  173 (485)
T TIGR00711        94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA  173 (485)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence            444455556666667788899999999999999999999999999999998887332  234444555444444443333


Q ss_pred             -hhccCC
Q 040646          477 -IGLPET  482 (509)
Q Consensus       477 -~~~~~~  482 (509)
                       ++.|++
T Consensus       174 ~~~~~~~  180 (485)
T TIGR00711       174 FFILPRD  180 (485)
T ss_pred             HHHcCCc
Confidence             345543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.00  E-value=1.2e-09  Score=106.23  Aligned_cols=152  Identities=10%  Similarity=-0.010  Sum_probs=105.2

Q ss_pred             hhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          328 YYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       328 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      ....|.+.+++|.+......   ...++..++.++.|+++||+|||+.+..+..+..++.++..+..  +.+......++
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   92 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--SLWVMAALWAL   92 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence            34456666777777655443   44477778899999999999999999999888888877776643  33333344444


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH-HHHh--hcccchhHHHHHHHHHHHHHHHH-hhcc
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV-LVAA--GRQNNFLSYGIFGLVIGLCGLFV-IGLP  480 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~  480 (509)
                      .+++.+...+...++..|.+|+++|+.+.++.+....+|..++|. +...  ...+....+.+.+++.++..++. ++.+
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881        93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence            455555666778889999999999999999999999999999984 4332  22334445555555554444433 3444


Q ss_pred             C
Q 040646          481 E  481 (509)
Q Consensus       481 ~  481 (509)
                      +
T Consensus       173 ~  173 (379)
T TIGR00881       173 D  173 (379)
T ss_pred             C
Confidence            4

>PRK03699 putative transporter; Provisional

Probab=99.00  E-value=2.6e-08  Score=97.51  Aligned_cols=143  Identities=12%  Similarity=0.033  Sum_probs=100.0

Q ss_pred             cccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      +|.+.++++.+......   ...++..++.++.|++.||+|||+.+..+..+..++.++..+.  ++.+......++.++
T Consensus        30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~G~  107 (394)
T PRK03699         30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSIAMFVLGV  107 (394)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHH
Confidence            45566777777655443   3447778899999999999999999998888877777766663  233333333444445


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHHHHHHHHHHHHHHH
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSYGIFGLVIGLCGLF  475 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      +.+...+....++.|.+|++.|+.+.+..+....+|+.++|.+.+..   ..++...+.+.+++.++..++
T Consensus       108 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        108 VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            55555666778889999999999999988888888888888887622   234455666666555444443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.00  E-value=3.7e-09  Score=100.85  Aligned_cols=170  Identities=14%  Similarity=0.132  Sum_probs=112.9

Q ss_pred             HHHhchHHHHHHHHHHHHHHHHhHhhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHH
Q 040646          303 ILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIM  379 (509)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~  379 (509)
                      +++.++.....+....++.++...+.+.+-..+++.+......   ..+.-.+.++.-++.+++.+|+|+-+++..++.+
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~  445 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC  445 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH
Confidence            5566665444455555555555555555544556655443332   3333467788888999999999999999999888


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHHh--hcc
Q 040646          380 SGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVAA--GRQ  456 (509)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~~--~~~  456 (509)
                      ..+-++.+....  ++|..+.+-++-+...+..|....+|++...|++.+++++++..... .+|-.+|.++.+.  ...
T Consensus       446 ~~~Rf~~~S~L~--n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  446 NVGRFLYYSYLQ--NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             HHHHHHHHHHhc--CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence            888877777744  45555566677777788888999999999999999999999987764 4444455555441  123


Q ss_pred             cchhHHHHHHHHHHHHHH
Q 040646          457 NNFLSYGIFGLVIGLCGL  474 (509)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~  474 (509)
                      +....|-++++.+++..+
T Consensus       524 g~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  524 GARTTFRIFGIACLVTLA  541 (618)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            333445555554444433

>PRK11043 putative transporter; Provisional

Probab=98.99  E-value=4.5e-08  Score=96.19  Aligned_cols=149  Identities=13%  Similarity=0.033  Sum_probs=98.8

Q ss_pred             ccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 040646          332 PLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFS  408 (509)
Q Consensus       332 ~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (509)
                      |.+.++.+.+......+   ..++..++.++.|+++||+|||+.+..+..+..++.+...+..  +.+......++.+++
T Consensus        30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~  107 (401)
T PRK11043         30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--SAAQLLVLRFVQAVG  107 (401)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh
Confidence            33456677776655444   3466778999999999999999999988887777766666533  223333333333344


Q ss_pred             HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646          409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGLPET  482 (509)
Q Consensus       409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (509)
                      .+...+....+..|.+|++.++...+..+....++..++|.+.+..  ..++...+.+.++..++..+..+++++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        108 VCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4444455667888999999888888888888888888888887732  2344455555555555554444444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.99  E-value=1.1e-08  Score=100.80  Aligned_cols=146  Identities=11%  Similarity=0.062  Sum_probs=95.0

Q ss_pred             cccccc-ccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          330 GMPLGL-GSLSFNLYLSVTFNA---LSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       330 ~~~~~~-~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      .++.++ +++|.+......+.+   +...++.+++|+++||+ |||+.+.++.++..++.+++............. ..+
T Consensus        31 ~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~-l~l  109 (493)
T PRK15462         31 LLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLS-LAI  109 (493)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHH
Confidence            344444 346777655544433   55667888999999999 999999999888888776554322111112211 112


Q ss_pred             HHHHHHHHhHHHHhhcccccchh--hhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH
Q 040646          405 AFFSACTAFSLLLIYTLELFPTC--VRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ..++.+...+...++..|.+|++  .|.++.++.+...++|+.++|.+.+...  .++...|.+.++..+++.+..
T Consensus       110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence            22333344455678899999975  6999999999999999999999998432  344555665554444444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.97  E-value=5.7e-09  Score=103.48  Aligned_cols=141  Identities=8%  Similarity=0.043  Sum_probs=87.3

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH--H--HhHHHHHHHHHHHH
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI--F--STNMWIYSVLRFIN  171 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~l~~~r~l~  171 (509)
                      .+++|.+   ..+.++..+...++..+++++.|+++|| +|||+.+.++.++.++......  .  .++....+..-.+.
T Consensus       271 ~~~~g~s---~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (432)
T PRK10406        271 VNTAGMH---ANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCA  346 (432)
T ss_pred             HHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            4556763   3367788888888888999999999999 9999988776655443332221  1  12222222222223


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHH-HHHHHHHHHHHhcCCc-chHHHHHHHhhHHHHH
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTL-GFLSLPAIAYINRGSS-WRRIYLYTSIPTILYC  240 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~  240 (509)
                      ++..+...+....++.|++|++.|+.+.|+.+....+ +....|.+..+.+..| |...+++.++..++..
T Consensus       347 ~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        347 LLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            3333344455667889999999999999998765443 2334666643444445 5555555555555543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.96  E-value=2.5e-08  Score=99.99  Aligned_cols=142  Identities=12%  Similarity=0.024  Sum_probs=100.5

Q ss_pred             cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 040646          337 SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAF  413 (509)
Q Consensus       337 ~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (509)
                      +++.+....+   ....++.+++.++.|++.||+|||+.+..+.++..++.++..+.........+..-++.+++.+..+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            4556655544   3344778889999999999999999999888877777665543222222333344445556666777


Q ss_pred             HHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--c-ccchhHHHHHHHHHHHHHHHHhh
Q 040646          414 SLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--R-QNNFLSYGIFGLVIGLCGLFVIG  478 (509)
Q Consensus       414 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      +....+..|.+|++.|+++.++.+....+|..++|.+.+..  . .++...+.+.++..++..++.+.
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999888732  2 24555666666665555444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.96  E-value=3e-08  Score=81.25  Aligned_cols=126  Identities=17%  Similarity=0.174  Sum_probs=91.1

Q ss_pred             HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhh
Q 040646          350 ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVR  429 (509)
Q Consensus       350 ~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r  429 (509)
                      .++.+++.++.+++.||+|||+.+..+.....++.+.+....  +.+......++.+++.+...+....+..|.+|++.|
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            466778899999999999999999888877777766655532  233333334455555566667788899999999999


Q ss_pred             hhHHHHHHHHHhHhhHHHHHHHHhhcc--cchhHHHHHHHHHHHHHHHHh
Q 040646          430 NSAISMVRQALVFGGVFSPVLVAAGRQ--NNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       430 ~~~~g~~~~~~~~g~~i~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      +++.++.+....+|..++|.+.+....  +....+.+.+...++..+...
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988884322  233455555555555544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.96  E-value=6e-08  Score=95.15  Aligned_cols=127  Identities=9%  Similarity=0.023  Sum_probs=94.7

Q ss_pred             HhhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Q 040646          326 MVYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG-KIWTSVEIGL  401 (509)
Q Consensus       326 ~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  401 (509)
                      ...-..|.+.++.+.+......+   ..++.+++++..+++.||+|||+.+..+..+.+++.+++.... .++.+.....
T Consensus        21 ~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~  100 (410)
T TIGR00885        21 ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVG  100 (410)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            33344566777788876655443   4477888999999999999999999999998888876654422 2233334444


Q ss_pred             HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .++.+++.+...+....+..+..|++.|++..++.+....+|..++|.+..
T Consensus       101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885       101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666777777788888899999999999999999999998888776

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.96  E-value=5.1e-09  Score=103.41  Aligned_cols=151  Identities=16%  Similarity=0.187  Sum_probs=123.9

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCch--HHHHHHHHHHHHHHHHHHH--------HhHHHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRK--NMLFLSCLMMSVSCLLTIF--------STNMWI  163 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~  163 (509)
                      -..+++|++   ..+...+.-+..+...+|++++|++.|| +|.|  +++..+++++.+..+...+        .++-+.
T Consensus       307 ~a~~~lg~s---~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~  382 (477)
T PF11700_consen  307 YATEVLGMS---TTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWE  382 (477)
T ss_pred             HHHHhcCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHH
Confidence            345588884   4467777778888899999999999999 9999  8999988888666666555        677888


Q ss_pred             HHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHH
Q 040646          164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCI  241 (509)
Q Consensus       164 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~  241 (509)
                      +.+.-++.|+..|...+...++.+|..|+++.+..+|++....-....+||++ +.+.+..| -|+.+....++.++.. 
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl-  461 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGL-  461 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999999999999999999999999998 66655544 7888777666666643 


Q ss_pred             HhheeecC
Q 040646          242 LVRFLVRE  249 (509)
Q Consensus       242 ~~~~~~~e  249 (509)
                      +.+..+++
T Consensus       462 ~ll~~v~~  469 (477)
T PF11700_consen  462 ILLFFVDV  469 (477)
T ss_pred             HHHhhccc
Confidence            44455543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.95  E-value=5.4e-08  Score=98.22  Aligned_cols=157  Identities=14%  Similarity=-0.046  Sum_probs=107.2

Q ss_pred             HhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646          324 IGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG  400 (509)
Q Consensus       324 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (509)
                      .+.....+|.+.++++.+.....   ....++...+.+..|+++||+|||+.+..+..+..++.++....+  +.+..+.
T Consensus        22 ~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~li~   99 (495)
T PRK14995         22 ATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP--TASWLIA   99 (495)
T ss_pred             HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC--CHHHHHH
Confidence            34455557888888887654433   334466677788999999999999999999999888888777743  3333444


Q ss_pred             HHHHHHHHHHHHhHHHHhhccccc-chhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH-
Q 040646          401 LELVAFFSACTAFSLLLIYTLELF-PTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV-  476 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-  476 (509)
                      .-.+.+++.+...+.......+.+ |+++|+++.|+......+|..++|.+.+...  .++.+.|.+...+.++..++. 
T Consensus       100 ~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~  179 (495)
T PRK14995        100 TRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTA  179 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Confidence            444455555555565555555554 7889999999999999999999999988433  344555665555444444433 


Q ss_pred             hhccCC
Q 040646          477 IGLPET  482 (509)
Q Consensus       477 ~~~~~~  482 (509)
                      +.+|+.
T Consensus       180 ~~l~~~  185 (495)
T PRK14995        180 RYVPRQ  185 (495)
T ss_pred             HhCCCC
Confidence            445554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.95  E-value=3.4e-09  Score=100.81  Aligned_cols=145  Identities=17%  Similarity=0.317  Sum_probs=122.4

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV  184 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  184 (509)
                      ++...|.+.+...+.-++...+..++.+| +|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+........
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk  335 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK  335 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33468999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeccCcccchhhhhh-HHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          185 LSTELVGKKRRGQVGSIG-FFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       185 ~i~e~~~~~~r~~~~~~~-~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |+++.+|++..++...+. +...++|..+.+.+ |.+.++.|.+..|++.+.+.+...++..+.+++.
T Consensus       336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            999999988877777764 67788887776666 7888888999999999988887776666666543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.94  E-value=3.8e-09  Score=93.94  Aligned_cols=153  Identities=18%  Similarity=0.252  Sum_probs=115.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-------hHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-------TNMWIY  164 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-------~~~~~l  164 (509)
                      -|++++.+|+   ++.|...+.+...+|..+| ++.|.+.|+ +|+|.++.+|.+...+|..+...+       .++|.+
T Consensus        25 S~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   25 SPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            5899999999   6668999999999999875 888999999 999999999999999988877653       357888


Q ss_pred             HHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646          165 SVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV  243 (509)
Q Consensus       165 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~  243 (509)
                      .+..++.|.+.+...........+.+| ++||++.|+.-...+++..+-..+ ..+.++..-+..+ +.+....++.+..
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll-~la~~~~~v~l~~  177 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLL-FLAVLPAVVCLVA  177 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHHHH
Confidence            888888888877777777666678887 689999999999999997776666 4444443334443 3343333334444


Q ss_pred             heeecCch
Q 040646          244 RFLVRESP  251 (509)
Q Consensus       244 ~~~~~esp  251 (509)
                      ..+++..|
T Consensus       178 ~~~vr~~~  185 (250)
T PF06813_consen  178 MFFVRPVP  185 (250)
T ss_pred             hhheeccC
Confidence            45555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.94  E-value=9.6e-08  Score=93.64  Aligned_cols=151  Identities=12%  Similarity=0.004  Sum_probs=101.0

Q ss_pred             cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF  407 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (509)
                      +|.+.++.+.+.....   ....++..++.++.|+++||+|||+.+..+..+..++.+.....+  +........++.++
T Consensus        31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~  108 (394)
T PRK11652         31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH--SLTVLIAASAIQGL  108 (394)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHh
Confidence            4666677787765544   334467778889999999999999999988888777776665532  23333333344444


Q ss_pred             HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHH-HhhccCCC
Q 040646          408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLF-VIGLPETR  483 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  483 (509)
                      +.+...+....+..|.++.+.++.+.+..+....++..++|.+.+...  .++...+.+.++..++..+. .++.||++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            444444556677788889889999999988888888888888877322  33445555555544433333 34556643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.94  E-value=9.7e-08  Score=93.80  Aligned_cols=165  Identities=10%  Similarity=0.012  Sum_probs=110.1

Q ss_pred             HHHHHHhHhhhccccccccCCchHHHHHHHHHhh-hhhHHHHHHHHhhhc-----Cchh-HHHHHHHHHHHHHHHHHHhc
Q 040646          319 VTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALS-ELPASLITFFLIGKL-----KRKS-SLLGFTIMSGVCSVLCVVMG  391 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~g~l~dr~-----gr~~-~~~~~~~~~~~~~~~~~~~~  391 (509)
                      .......+....+|.++++.|.+....+.+..+. -.+..++.|.++||+     |||+ .+..+..+.+++...+.+..
T Consensus        10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~   89 (402)
T PRK11902         10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP   89 (402)
T ss_pred             HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC
Confidence            3344455666678999999999987776554422 246778999999999     7765 67777777777766666643


Q ss_pred             cch-hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHH
Q 040646          392 KIW-TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGL  467 (509)
Q Consensus       392 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~  467 (509)
                      ... .+....+.++..+......+...++..|..|+++|+++.++......+|..+++.+.....   .++...+.+.++
T Consensus        90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~  169 (402)
T PRK11902         90 PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAG  169 (402)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHH
Confidence            322 2222323233334445555678899999999999999999999888888888887665222   245556666666


Q ss_pred             HHHHHHHHHhhccCCC
Q 040646          468 VIGLCGLFVIGLPETR  483 (509)
Q Consensus       468 ~~~~~~~~~~~~~~~~  483 (509)
                      +.++..+..+..||++
T Consensus       170 ~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        170 LMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHhcCCCc
Confidence            6555444445556543

>PRK15075 citrate-proton symporter; Provisional

Probab=98.93  E-value=5.5e-09  Score=103.69  Aligned_cols=130  Identities=13%  Similarity=0.050  Sum_probs=89.2

Q ss_pred             ccee-eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHH-HH---HHhHHHHHHHH
Q 040646           93 TSII-SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLL-TI---FSTNMWIYSVL  167 (509)
Q Consensus        93 ~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~-~~---~~~~~~~l~~~  167 (509)
                      |.+. +.+|++   ..+.++....+.++..++.++.|+++|| +|||+++..+..+..+.... ..   ..+++..+.+.
T Consensus       262 p~~l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (434)
T PRK15075        262 PTFGKTVLHLS---AADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV  337 (434)
T ss_pred             HHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            4433 346774   3356788888889999999999999999 99999887765544332221 11   12344444455


Q ss_pred             HHHHhhccchhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcCCcch
Q 040646          168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRGSSWR  226 (509)
Q Consensus       168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~~~wr  226 (509)
                      .++.|++.+...+....++.|.+|+++|+...++.. .+..++..++|.+ +++.+..|++
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        338 ELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            566666666666666678899999999999999854 4444556667777 6777776754

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.93  E-value=1.7e-07  Score=94.25  Aligned_cols=164  Identities=12%  Similarity=0.073  Sum_probs=109.0

Q ss_pred             HHHHHhHhhhccccccccCCchHHHHHHHHHhhhh-hHHHHHHHHhhhc-----CchhH-HHHHHHHHHHHHHHHHHhcc
Q 040646          320 TGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSEL-PASLITFFLIGKL-----KRKSS-LLGFTIMSGVCSVLCVVMGK  392 (509)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~g~l~dr~-----gr~~~-~~~~~~~~~~~~~~~~~~~~  392 (509)
                      ...........+|.++++.|.+......+..++.. ++.++.+.++||+     |||+. +..+.+..+++...+.+...
T Consensus        24 ~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~  103 (491)
T PRK11010         24 SGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP  103 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCC
Confidence            33344444555677888888887666655333222 6889999999999     98885 55666666666666655432


Q ss_pred             -chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHH
Q 040646          393 -IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLV  468 (509)
Q Consensus       393 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~  468 (509)
                       .+.+......++..++.....+...++..|.+|+++|+.+.++......+|..+++.+.....   .++...+.+.+++
T Consensus       104 ~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l  183 (491)
T PRK11010        104 GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAAL  183 (491)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence             223333333344444555555677899999999999999999999999999998887776322   2455667776766


Q ss_pred             HHHHHHHHhhccCCC
Q 040646          469 IGLCGLFVIGLPETR  483 (509)
Q Consensus       469 ~~~~~~~~~~~~~~~  483 (509)
                      .++..+..++.||+.
T Consensus       184 ~ll~~l~~~~~~e~~  198 (491)
T PRK11010        184 LIPCIIATLLAPEPT  198 (491)
T ss_pred             HHHHHHHHHhcCCCc
Confidence            665555545566653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.93  E-value=6.9e-08  Score=93.11  Aligned_cols=152  Identities=11%  Similarity=-0.015  Sum_probs=97.0

Q ss_pred             hccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646          329 YGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       329 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (509)
                      ..+|.+.++++.+....+.+   ..++..++.+..|+++||+|||+++.........+.. ..... ++....+..-++.
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~R~l~   89 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP-FNYEWLLACQLLA   89 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh-ccHHHHHHHHHHH
Confidence            34566667777776555443   3466778899999999999999876655444433322 22221 2333333334444


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-HhhccCC
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGLPET  482 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  482 (509)
                      +++.+. .........|.+|+++|++++++.+....+|..++|.+....  ..++...+.+.+++.++..++ .+++||.
T Consensus        90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~  168 (368)
T TIGR00903        90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPAL  168 (368)
T ss_pred             HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            444443 344455568999999999999999999999999888777632  345555666666665555444 3466764


Q ss_pred             C
Q 040646          483 R  483 (509)
Q Consensus       483 ~  483 (509)
                      +
T Consensus       169 p  169 (368)
T TIGR00903       169 P  169 (368)
T ss_pred             C
Confidence            4

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.92  E-value=5.7e-09  Score=116.81  Aligned_cols=140  Identities=18%  Similarity=0.146  Sum_probs=116.6

Q ss_pred             eeeeecccccccc-ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646           95 IISEWDLECASSL-IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF  173 (509)
Q Consensus        95 i~~~~~~~~~~~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  173 (509)
                      +.+++|+   +.. +.+++.+...++..++++++|+++|| +++|+++.++.++.+++.++..+.++.+.+++..++.|+
T Consensus       259 ~~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        259 AKEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             HHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3455676   444 67999999999999999999999999 999999999988888888888888899999999999999


Q ss_pred             ccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHhhHHH
Q 040646          174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR--GSSWRRIYLYTSIPTIL  238 (509)
Q Consensus       174 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~wr~~f~~~~~~~~~  238 (509)
                      +.+...+...+++.+.+|+++||+++++.+....+|.++++.++.+..  ..++...|++.+.+.++
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888877754433  23455666665555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.91  E-value=1.1e-08  Score=92.88  Aligned_cols=128  Identities=20%  Similarity=0.132  Sum_probs=96.8

Q ss_pred             HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccch
Q 040646          118 MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQ  197 (509)
Q Consensus       118 ~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~  197 (509)
                      +.-.-|.++.+.+.|| +|||+.+..+.+++++..++.....+-..+.+.-+..-+...+.+.+.+.|..|.+|.+-|+.
T Consensus       392 laefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            3445678899999999 999999999999999999888776543333333333333445557788999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhheeec
Q 040646          198 VGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVR  248 (509)
Q Consensus       198 ~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  248 (509)
                      ..|.-+...-+|.++.|+++ +....+-..+..+.+..+++.++. ..++|
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIa-vcffP  519 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIA-VCFFP  519 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHH-heeee
Confidence            99999999999999999998 333344555666667777775544 46666

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.90  E-value=7.4e-09  Score=94.64  Aligned_cols=108  Identities=14%  Similarity=0.079  Sum_probs=82.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646          343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE  422 (509)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (509)
                      ...+..+++..++.+...|.++||+|||.++.++.+..++...+...  +.+....+..=++++... +..++..++++|
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~--S~~F~afv~aR~l~Gi~k-gnl~v~rAiisd  147 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL--SRNFAAFVLARFLGGIFK-GNLSVIRAIISD  147 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhcc-CchHHHHHHHHh
Confidence            34455667889999999999999999999999998888887666655  322211111123333322 334678899999


Q ss_pred             ccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      ++++++|+.+++..++...+|.++||.+.+.
T Consensus       148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgy  178 (451)
T KOG2615|consen  148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGY  178 (451)
T ss_pred             hcChhhccceeeeeehhhhcchhhcchhhhH
Confidence            9999999999999999999999999999883

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.89  E-value=9.4e-08  Score=92.67  Aligned_cols=119  Identities=13%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             ccc-ccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646          331 MPL-GLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF  406 (509)
Q Consensus       331 ~~~-~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (509)
                      .|. +.++++.+......   ...++..++.++.|+++||+|||+.+..+.++..++.+++.+... +.+......++.+
T Consensus        24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~g  102 (366)
T TIGR00886        24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-SYSVLLLLRLFIG  102 (366)
T ss_pred             hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence            453 55677887665543   344777889999999999999999999999888888777766431 2333333333333


Q ss_pred             HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646          407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV  451 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~  451 (509)
                      ++. ..++....++.|.+|+++|+.+.++......+|..+++.+.
T Consensus       103 ~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  146 (366)
T TIGR00886       103 IAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM  146 (366)
T ss_pred             Hhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            332 33455677889999999999999998866666665555444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.88  E-value=1.2e-08  Score=99.92  Aligned_cols=142  Identities=13%  Similarity=0.004  Sum_probs=104.5

Q ss_pred             ceeeeeccccccccccchhHHHHH-HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH------hHHHHHHH
Q 040646           94 SIISEWDLECASSLIKGLPASSFF-MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS------TNMWIYSV  166 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~l~~  166 (509)
                      ...+|.|++   ..+.|++..... ....++.++.|++.|| +|+|+.+..+..+.++..+.....      ++.+.+..
T Consensus       233 ~~l~~~G~s---~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       233 LYLVDAGWP---LEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS  308 (390)
T ss_pred             HHHHhcCCC---HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence            334457884   447888888775 4667788999999999 999999988776654433332221      23334445


Q ss_pred             HHHHHhhccchhhhhheeeeEeeccC-cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646          167 LRFINGFGRATIGTCAIVLSTELVGK-KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY  239 (509)
Q Consensus       167 ~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~  239 (509)
                      ...+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+ +.+.+..||+..|++.++..++.
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            55566677777777777777777765 889999999999999999999999 67777789999998887766664

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.87  E-value=2.2e-08  Score=97.34  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=108.8

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---HHH------HH
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---NMW------IY  164 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---~~~------~l  164 (509)
                      .+-++-|++.+   +..+......+...+..+.+..+.|| +|||+.++.+..+..+..+++....   +..      ..
T Consensus       295 ~i~~~aG~~~~---~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~  370 (485)
T KOG0569|consen  295 SIFKTAGFTPE---EAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC  370 (485)
T ss_pred             HHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            44455566433   56677777778888899999999999 9999999999999988888876542   111      12


Q ss_pred             HHHHHHH--hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHH
Q 040646          165 SVLRFIN--GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCI  241 (509)
Q Consensus       165 ~~~r~l~--G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~  241 (509)
                      +++.++.  .++.| .-|...-+.+|.+|++.|..++++..+..-+...+-... -.+-+..|- +.|++..+++.+..+
T Consensus       371 i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i  448 (485)
T KOG0569|consen  371 IAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLI  448 (485)
T ss_pred             HHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Confidence            3333333  33333 367778889999999999999998877776665544333 233333333 778888888888888


Q ss_pred             HhheeecCch
Q 040646          242 LVRFLVRESP  251 (509)
Q Consensus       242 ~~~~~~~esp  251 (509)
                      ..++.+|||.
T Consensus       449 ~~~~~lPETk  458 (485)
T KOG0569|consen  449 YLYRYLPETK  458 (485)
T ss_pred             HHHHhCcccC
Confidence            8999999983

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.87  E-value=4.2e-07  Score=88.85  Aligned_cols=114  Identities=14%  Similarity=0.085  Sum_probs=80.1

Q ss_pred             cCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHH
Q 040646          337 SLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG---KIWTSVEIGLELVAFFSAC  410 (509)
Q Consensus       337 ~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  410 (509)
                      +++++......+.+   +...+..+..|++.||+|.|+++.++.++..+..+...+..   .++....+.+.++.+++ +
T Consensus        64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g  142 (462)
T PRK15034         64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G  142 (462)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence            57777666554433   55566777889999999999999988888887777766531   12334444444444444 5


Q ss_pred             HHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhH----HHHHHH
Q 040646          411 TAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGV----FSPVLV  451 (509)
Q Consensus       411 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~----i~p~~~  451 (509)
                      ..++.....+++.+|+++||++.|+....+++|..    +.|.+.
T Consensus       143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            57778888899999999999999999655555554    455444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.87  E-value=4.3e-08  Score=92.34  Aligned_cols=146  Identities=18%  Similarity=0.182  Sum_probs=119.5

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-STNMWIYSVLRFI  170 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-~~~~~~l~~~r~l  170 (509)
                      -|.+++..|.   +...++++.-.|.++..+|..+.|+++||  +.|+.+.....+.++..+...+ .++.+..++.-++
T Consensus       235 ~P~L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~  309 (394)
T COG2814         235 RPFLESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGASPALALALLFL  309 (394)
T ss_pred             HHHHHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            6788888888   44579999999999999999999999998  7777777776666666666555 4556677777777


Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV  243 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~  243 (509)
                      .|++.+.........+++ ..++.++.+.+++....++|..+|..+ +.+.++.|+....++.+++.++..++.
T Consensus       310 wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         310 WGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA  382 (394)
T ss_pred             HHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            888877777777777777 446889999999999999999999999 577888999999999988888755443

>PTZ00207 hypothetical protein; Provisional

Probab=98.85  E-value=1.4e-07  Score=94.73  Aligned_cols=144  Identities=9%  Similarity=-0.015  Sum_probs=94.1

Q ss_pred             ccccccCCchHHHHHHHHHhhhh--hHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHH
Q 040646          332 PLGLGSLSFNLYLSVTFNALSEL--PASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK----IWTSVEIGLELVA  405 (509)
Q Consensus       332 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  405 (509)
                      +.+.+++|.+......+..++..  ...++.|++.||+|+|+++.++.++..++.++..+...    .+.+...+..++.
T Consensus        51 ~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~  130 (591)
T PTZ00207         51 GAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLM  130 (591)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence            44566678776655544443322  23456899999999999999999999999888777421    2233333334444


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH-HHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF-SPVLVAAGRQNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +++.+..++.....+.+.+| ++||.+.|+......+|+.+ +|+..+....+....+++.+++.++..++.
T Consensus       131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~  201 (591)
T PTZ00207        131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA  201 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45555555566667788887 67999999999999999975 555444333334455555565555544443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.85  E-value=2.2e-07  Score=93.19  Aligned_cols=113  Identities=12%  Similarity=0.098  Sum_probs=88.7

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHhhccchhhhhh
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-----STNMWIYSVLRFINGFGRATIGTCA  182 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~  182 (509)
                      ..+++.+...++..++.+++++++|| +|+|+.+.++.++..++.+...+     ..+.+.+++.-++.|++.+...+..
T Consensus       267 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~  345 (473)
T PRK10429        267 LFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQ  345 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777778889999999999999 99999999888877766655433     3456777778888999999999999


Q ss_pred             eeeeEeecc-------CcccchhhhhhHHHHHHHHHHHHHH-HHHhc
Q 040646          183 IVLSTELVG-------KKRRGQVGSIGFFCFTLGFLSLPAI-AYINR  221 (509)
Q Consensus       183 ~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~  221 (509)
                      .++++|..+       .++.|..++......-+|..+++.+ +.+.+
T Consensus       346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999966       2334557888888888888888877 55543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.84  E-value=2.3e-05  Score=76.80  Aligned_cols=265  Identities=11%  Similarity=0.091  Sum_probs=152.9

Q ss_pred             Ccceeeeeccccc--cccccchhHHHHHHHHHHH-HhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----h-----
Q 040646           92 HTSIISEWDLECA--SSLIKGLPASSFFMGCLAG-GLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----T-----  159 (509)
Q Consensus        92 ~~~i~~~~~~~~~--~~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----~-----  159 (509)
                      +.++++.+.++..  +.....++-+...+..++. .++.+++++| ++|++++-+....+....+++++.    +     
T Consensus        26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p  104 (472)
T TIGR00769        26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP  104 (472)
T ss_pred             HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence            4566666666422  2246788888887777777 8999999999 999999887777766666665554    1     


Q ss_pred             ----------------------HHHHHHHHHHHHhhccchhhh-hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH
Q 040646          160 ----------------------NMWIYSVLRFINGFGRATIGT-CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI  216 (509)
Q Consensus       160 ----------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~  216 (509)
                                            +.|...+..+...+-...... ....+.+|.++.+|-.|..++...+.++|.++++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  133344445555555444454 677889999999999999999999999999999987


Q ss_pred             -HHHhc--------CCcch----HHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccc
Q 040646          217 -AYINR--------GSSWR----RIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDF  283 (509)
Q Consensus       217 -~~~~~--------~~~wr----~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (509)
                       .++..        ...|.    ..+.+.++.+++. +....++.+..       .              .+++..+.+ 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~-------~--------------~~~~~~~~~-  241 (472)
T TIGR00769       185 IKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAI-ILLYWWVNRNV-------L--------------TDPRSYNPA-  241 (472)
T ss_pred             HHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc-------c--------------CCccccchh-
Confidence             45441        12342    2223333333332 22222221100       0              000000000 


Q ss_pred             cCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccCCchH-------HHHHHHHHhhhhhH
Q 040646          284 NNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNL-------YLSVTFNALSELPA  356 (509)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~  356 (509)
                        .+.++++++.....+++.++++|..+.......+...+.+..++......++..-++       .......++..++.
T Consensus       242 --~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~  319 (472)
T TIGR00769       242 --LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTM  319 (472)
T ss_pred             --hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              000111112233457888999998766666666666666665544322222211111       11223344555556


Q ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHH
Q 040646          357 SLITFFLIGKLKRKSSLLGFTIMSGV  382 (509)
Q Consensus       357 ~~~~g~l~dr~gr~~~~~~~~~~~~~  382 (509)
                      .++.+++.+|+|-+....+.-++..+
T Consensus       320 ~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       320 MLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            66679999999988766654444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.82  E-value=2.6e-07  Score=89.21  Aligned_cols=155  Identities=15%  Similarity=0.005  Sum_probs=98.5

Q ss_pred             hhhccccccccCCchHHHHHHHHHh--hhhhHHHHHHHHhhhc-----CchhHH-HHHHHHHHHHHHHHHHhccch-hHH
Q 040646          327 VYYGMPLGLGSLSFNLYLSVTFNAL--SELPASLITFFLIGKL-----KRKSSL-LGFTIMSGVCSVLCVVMGKIW-TSV  397 (509)
Q Consensus       327 ~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~g~l~dr~-----gr~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~  397 (509)
                      .....|.+.++.|.+.........+  ... ..++.|.++||+     |||+.+ ..+.++.+++...+.+..... .+.
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            3345677788888887776655432  222 278999999998     888864 555666666555555433222 222


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--cc--------chhHHHHHHH
Q 040646          398 EIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QN--------NFLSYGIFGL  467 (509)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~--------~~~~~~~~~~  467 (509)
                      .....++.........+...+++.|.+|+++|+.+.++......+|.+++|.+.+...  .+        +...+.+.++
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai  165 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL  165 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence            2222233334444455677889999999999999999999989999998888876221  22        4455666666


Q ss_pred             HHHHHHHHHhh-ccCC
Q 040646          468 VIGLCGLFVIG-LPET  482 (509)
Q Consensus       468 ~~~~~~~~~~~-~~~~  482 (509)
                      ..++..+..++ .+|.
T Consensus       166 ~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       166 LILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHhccCC
Confidence            55554444333 4553

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.81  E-value=7.6e-08  Score=89.81  Aligned_cols=144  Identities=14%  Similarity=0.095  Sum_probs=108.1

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHH
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-------NMWIYSVL  167 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~  167 (509)
                      ++++|++   +..+.|...+.+.+...+..+.+|+++|| +|.+|++.......+++..+.++.+       +...+++.
T Consensus       245 ~~~~fg~---~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  320 (417)
T COG2223         245 LVTQFGL---SPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAV  320 (417)
T ss_pred             HHHhcCC---ChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHH
Confidence            3567888   44467899999999999999999999999 9999999999888888888877653       34433333


Q ss_pred             HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHHHh
Q 040646          168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCILV  243 (509)
Q Consensus       168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~~~  243 (509)
                      -+..++..|.-......++..++| ++-|.+.|+..+..++|...-|.. +...+..| ++..|++.....++..++.
T Consensus       321 ~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         321 FLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             HHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            333344444444456677888886 477899999999999998777776 66655555 8888888887777755444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.79  E-value=1.5e-07  Score=94.72  Aligned_cols=168  Identities=12%  Similarity=-0.050  Sum_probs=98.4

Q ss_pred             HHhchH-HHHHHHHHHHHHHHHhHhhhccccc-cccCCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHH
Q 040646          304 LVEKKW-ALRRLSAIMVTGFGIGMVYYGMPLG-LGSLSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFT  377 (509)
Q Consensus       304 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~  377 (509)
                      .+++|. ++......+...++.......++.+ .+++|.+......+..   .......+++|+++|| +|||+.+..+.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~   95 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA   95 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            345553 3333333333333333333333444 3667877655433332   2223334678999999 59999999998


Q ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhh--hhhHHHHHHHHHhHhhHHHHHHHHhhc
Q 040646          378 IMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCV--RNSAISMVRQALVFGGVFSPVLVAAGR  455 (509)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~~~~~  455 (509)
                      ++.+++..++.+.... .........+.+++.+...+...++..|.+|++.  +..+.++.+...++|..++|.+.+...
T Consensus        96 ~~~~ig~~l~~~~~~~-~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         96 IVLAIGYALVAWSGHD-AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHhccc-HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887666653222 2222222233334445455666788899997643  456788888889999999999988332


Q ss_pred             --ccchhHHHHHHHHHHHH
Q 040646          456 --QNNFLSYGIFGLVIGLC  472 (509)
Q Consensus       456 --~~~~~~~~~~~~~~~~~  472 (509)
                        .++...|.+.++..+++
T Consensus       175 ~~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        175 AKYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             HhhCHHHHHHHHHHHHHHH
Confidence              34455555555433333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=9.6e-08  Score=97.23  Aligned_cols=138  Identities=19%  Similarity=0.131  Sum_probs=105.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646          343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE  422 (509)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (509)
                      .....+..++..+|.++.|.++||+|||++++.+.++..++.+...+  .++.....++-++.+++......+...+..|
T Consensus       121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~--a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E  198 (521)
T KOG0255|consen  121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF--APNYWMFLIFRFLSGFFGSGPLTVGFGLVAE  198 (521)
T ss_pred             HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHhhccchhHHhHhhhee
Confidence            34456666888999999999999999999999999999999877777  4445566666677777777888889999999


Q ss_pred             ccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccCCC
Q 040646          423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETR  483 (509)
Q Consensus       423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (509)
                      .+++++|+.+..+ ......++.++|...+....++.+.+.+.....++..++.++.+|.+
T Consensus       199 ~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~  258 (521)
T KOG0255|consen  199 IVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESP  258 (521)
T ss_pred             ecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence            9999999999999 77777777777777775545566666666665555544444444543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.79  E-value=9.1e-08  Score=95.78  Aligned_cols=134  Identities=10%  Similarity=-0.028  Sum_probs=88.6

Q ss_pred             cccCCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 040646          335 LGSLSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSAC  410 (509)
Q Consensus       335 ~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (509)
                      .+++|.+......+.+   +......+++|+++|| +|||+++..+.++..++.+.+.+...... .......+.+.+.+
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~-ll~~~~~l~~ig~g  120 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPD-LIFIALGTIAVGNG  120 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhccc
Confidence            4457776555443332   3444556689999999 99999999999999998887776432222 22122233345555


Q ss_pred             HHhHHHHhhcccccchh--hhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHH
Q 040646          411 TAFSLLLIYTLELFPTC--VRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVI  469 (509)
Q Consensus       411 ~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~  469 (509)
                      ...+...+++.|.+|++  .|+.+.++.+...++|..++|.+.+..  ..++...|.+.++..
T Consensus       121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~  183 (489)
T PRK10207        121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL  183 (489)
T ss_pred             cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            55667788999999877  457788888888899988888877732  223444555544433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.78  E-value=1.1e-07  Score=89.26  Aligned_cols=131  Identities=9%  Similarity=0.068  Sum_probs=102.5

Q ss_pred             eeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccch
Q 040646           98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRAT  177 (509)
Q Consensus        98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~  177 (509)
                      ++|+   ++.+.++..+.+..+..+|.+..+++.|| +|+|+++.++..+..++.++....++...+ ..-++.|++.+.
T Consensus       172 ~~g~---s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~  246 (310)
T TIGR01272       172 ALGL---PEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSI  246 (310)
T ss_pred             cCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Confidence            3566   44478999999999999999999999999 999999988888888777666655543322 355588999999


Q ss_pred             hhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhh
Q 040646          178 IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIP  235 (509)
Q Consensus       178 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~  235 (509)
                      .+|...+...+..|+ +.+.+.++. ....+|.++.|.+ |.+.+..|.+..|++..+.
T Consensus       247 i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       247 MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            999999988888774 345666665 4566888888876 8888888888888754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.78  E-value=1.5e-08  Score=94.48  Aligned_cols=150  Identities=19%  Similarity=0.185  Sum_probs=123.9

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGR  175 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~  175 (509)
                      .+++|+   ++.+..++.-...+..++|++++|+|.|| +|.|+++.+++++..+.++...+...-..+.+.-.+.|...
T Consensus       280 ~~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~  355 (438)
T COG2270         280 AADLGL---SSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSL  355 (438)
T ss_pred             HHHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Confidence            348899   55578888888899999999999999999 99999999999999999998888777777778888999999


Q ss_pred             chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-SSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |.....+.+|..+..|+++-++.+|+++...-.+..+||.+ +.+.+- .+-|.-+....++..+ .++....+|+.
T Consensus       356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~i-Gl~~L~~v~~~  431 (438)
T COG2270         356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLI-GLLLLLRVKVP  431 (438)
T ss_pred             chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hHhhEEeecCC
Confidence            99999999999999999999999999999999999999998 654432 2356665555554444 34555666653

>PRK10133 L-fucose transporter; Provisional

Probab=98.78  E-value=3.6e-07  Score=90.47  Aligned_cols=128  Identities=9%  Similarity=-0.006  Sum_probs=92.4

Q ss_pred             hHhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH-hccchhHHHHH
Q 040646          325 GMVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV-MGKIWTSVEIG  400 (509)
Q Consensus       325 ~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  400 (509)
                      .......|.+.++++.+......   ...++..++.++.|++.||+|||+++..+..+..++.+++.. ...++......
T Consensus        43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~  122 (438)
T PRK10133         43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV  122 (438)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            33444567777778887665543   444778889999999999999999999999998888766532 11333344444


Q ss_pred             HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      ..++.+++.+...+....++.|..|++.|....++.+....+|..++|.+..
T Consensus       123 ~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666676777777788777776666788888888889888887754

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.78  E-value=4.1e-07  Score=87.53  Aligned_cols=151  Identities=17%  Similarity=0.082  Sum_probs=107.8

Q ss_pred             hccccccccCCchHHH-HH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646          329 YGMPLGLGSLSFNLYL-SV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV  404 (509)
Q Consensus       329 ~~~~~~~~~~g~~~~~-~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (509)
                      +..|++.+++|++... .+   .....+..+..+.+|+++||+|.|+++..+.+...+..++..+..  ......++-++
T Consensus        47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~L~i~R~l  124 (511)
T TIGR00806        47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWHMQLMEVF  124 (511)
T ss_pred             HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            4456677788887665 43   444477788999999999999999999999988888888887732  34444444555


Q ss_pred             HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc----cchhHHHHHHHHHHHHHHHHhhcc
Q 040646          405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ----NNFLSYGIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  480 (509)
                      .+++.+..+ ....++...+|+++|+++.|+.+....+|.++++.+.+....    .+.....+......++.++.+++|
T Consensus       125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            666666676 888999999999999999999999999999988888773111    111122233333344555567777


Q ss_pred             CC
Q 040646          481 ET  482 (509)
Q Consensus       481 ~~  482 (509)
                      ..
T Consensus       204 ~~  205 (511)
T TIGR00806       204 RP  205 (511)
T ss_pred             CC
Confidence            43

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09848 glucuronide transporter; Provisional

Probab=98.76  E-value=2.5e-07  Score=92.26  Aligned_cols=122  Identities=19%  Similarity=0.185  Sum_probs=95.2

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhh
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGF  173 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~  173 (509)
                      ++.+|.+   +...++......++..++.++.+++.|| +|+|+++.++.++.+++.++..+.+  +++.+.+..++.|+
T Consensus       256 ~~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~  331 (448)
T PRK09848        256 RYVLNDT---GLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASI  331 (448)
T ss_pred             eeecCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            3445542   2233444444467788899999999999 9999999999998888887777654  67777778889999


Q ss_pred             ccchhhhhheeeeEeeccCc-------ccchhhhhhHHHHHHHHHHHHHH-HHHhc
Q 040646          174 GRATIGTCAIVLSTELVGKK-------RRGQVGSIGFFCFTLGFLSLPAI-AYINR  221 (509)
Q Consensus       174 ~~g~~~~~~~~~i~e~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~-~~~~~  221 (509)
                      |.+...+...++.+|..|.+       ++|...++.+....+|..+++.+ +.++.
T Consensus       332 G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        332 GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888754       35888999999999999998887 45443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.74  E-value=4.3e-08  Score=109.48  Aligned_cols=139  Identities=14%  Similarity=0.093  Sum_probs=111.1

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----------------
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-----------------  158 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-----------------  158 (509)
                      .+.+|.   +..+.|++.+.+.+|..+++++.|+++|| .++++.+..+.++.+++.+...+.                 
T Consensus       253 ~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (1140)
T PRK06814        253 KETLGG---DENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF  328 (1140)
T ss_pred             HHHcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhh
Confidence            345677   44578999999999999999999999998 887777666666666655544443                 


Q ss_pred             ---hHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHh-cCCcchHHHHHHH
Q 040646          159 ---TNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYIN-RGSSWRRIYLYTS  233 (509)
Q Consensus       159 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-~~~~wr~~f~~~~  233 (509)
                         ++.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++ +.+. ...++...+++.+
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~  408 (1140)
T PRK06814        329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIA  408 (1140)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence               6778888889999999999999999999999999999999999999999999999988 4443 3446666666555


Q ss_pred             hhHHH
Q 040646          234 IPTIL  238 (509)
Q Consensus       234 ~~~~~  238 (509)
                      +..++
T Consensus       409 ~~~~~  413 (1140)
T PRK06814        409 LANLI  413 (1140)
T ss_pred             HHHHH
Confidence            54444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.73  E-value=5.7e-07  Score=88.52  Aligned_cols=162  Identities=12%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             HHHhHhhhccccccccCCchHHHHHHHH---HhhhhhHHHHHHHHhh----hcCchhHHHHH-HHHHHHHHHHHHHhccc
Q 040646          322 FGIGMVYYGMPLGLGSLSFNLYLSVTFN---ALSELPASLITFFLIG----KLKRKSSLLGF-TIMSGVCSVLCVVMGKI  393 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~d----r~gr~~~~~~~-~~~~~~~~~~~~~~~~~  393 (509)
                      ++........+.+++.+|.+......+.   .+.+++..++.|+++|    |+|||+..+.. .....++..++.+....
T Consensus        18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence            3334444444556777888876655443   3667778888999999    59999988765 44444554555442211


Q ss_pred             -----------hh----HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhh--hhHHHHHHHHHhHhhHHHHHHHHhhc-
Q 040646          394 -----------WT----SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVR--NSAISMVRQALVFGGVFSPVLVAAGR-  455 (509)
Q Consensus       394 -----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~g~~i~p~~~~~~~-  455 (509)
                                 ..    ...+....+.-+......+...+++.|..|+++|  +.+.++.+....+|+.+++.+.+... 
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~  177 (477)
T TIGR01301        98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL  177 (477)
T ss_pred             hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                       00    1111112222244555666778999999998865  57888888888999998888776321 


Q ss_pred             ----------------ccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646          456 ----------------QNNFLSYGIFGLVIGLCGLFV-IGLPETR  483 (509)
Q Consensus       456 ----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  483 (509)
                                      .+....|.+.+++.+++.+.. +..+|..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                            022344555555555555443 4456643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.72  E-value=1.4e-07  Score=91.35  Aligned_cols=142  Identities=13%  Similarity=0.166  Sum_probs=112.8

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-hHHHHHH----HHHHHHhhccchhhhhh
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-TNMWIYS----VLRFINGFGRATIGTCA  182 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~----~~r~l~G~~~g~~~~~~  182 (509)
                      ..+.+.+...++-.+.-...+++..| +|.|+++.++.+.+++=..+.+.. ++.+...    +...++|+..+......
T Consensus       244 ~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~  322 (400)
T PF03825_consen  244 TIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAAS  322 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            45667777777888888899999999 999999999999999998888887 4544333    34567999999999999


Q ss_pred             eeeeEeeccCcccchhhhhhHH-HHHHHHHHHHHH-HHHhcCCc------chHHHHHHHhhHHHHHHHhheeecCc
Q 040646          183 IVLSTELVGKKRRGQVGSIGFF-CFTLGFLSLPAI-AYINRGSS------WRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       183 ~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~~~~~-~~~~~~~~------wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      ..++.+.+|++.|+++.+++.. ..++|..+|..+ |++.+.+|      |...+.+.+...++..++..++.+|+
T Consensus       323 ~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  323 VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999876 467999999988 56666544      55566667766666655665656553

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.70  E-value=1.5e-06  Score=89.05  Aligned_cols=144  Identities=18%  Similarity=0.208  Sum_probs=111.0

Q ss_pred             eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHH
Q 040646           97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--------MWIYSVLR  168 (509)
Q Consensus        97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~l~~~r  168 (509)
                      +.+|+   ++.....+...+....-+..+++|.++|+++||++.+.++.++..++.++.+++..        ....+++-
T Consensus        16 ~~lg~---~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL   92 (654)
T TIGR00926        16 NFLGF---SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL   92 (654)
T ss_pred             HHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence            34666   33355666667777777778899999999999999999999999999988876421        23466778


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcc---cchhhhhhHHHHHHHHHHHHHH-HHHhcC-------CcchHHHHHHHhhHH
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKR---RGQVGSIGFFCFTLGFLSLPAI-AYINRG-------SSWRRIYLYTSIPTI  237 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-------~~wr~~f~~~~~~~~  237 (509)
                      .+..+|.|+.-+...+...|.+++++   |-..+.++..+.++|.++++.+ .++..+       .+|...|.+.++..+
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~  172 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI  172 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence            88889999999999999999987543   5667788888899999988877 555422       369999999888777


Q ss_pred             HHHHHh
Q 040646          238 LYCILV  243 (509)
Q Consensus       238 ~~~~~~  243 (509)
                      +..++.
T Consensus       173 ia~lvf  178 (654)
T TIGR00926       173 LALIVF  178 (654)
T ss_pred             HHHHHH
Confidence            654443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.68  E-value=2.4e-08  Score=99.24  Aligned_cols=152  Identities=20%  Similarity=0.270  Sum_probs=132.0

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC--chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG--RKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF  169 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  169 (509)
                      +|...++.+.   ++.+.+.+.++..+...++.++.|+++|+ ..  ++.+..++++..+++.+.+++.++++.++..-+
T Consensus       321 l~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~  396 (509)
T KOG2504|consen  321 LPSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSI  396 (509)
T ss_pred             HHHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            6777888888   55589999999999999999999999999 77  566678888888999999999999999999999


Q ss_pred             HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHHHhheee
Q 040646          170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      +.|++.|.........+.|..+.++-..+.|+.....+++.++||++ +++.+..+ |...|+..++..++.+ ..++..
T Consensus       397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~-~~~~~~  475 (509)
T KOG2504|consen  397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA-VLLLIL  475 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH-HHHHHh
Confidence            99999999998888899999999999999999999999999999999 55555555 9999999998888755 333444


Q ss_pred             c
Q 040646          248 R  248 (509)
Q Consensus       248 ~  248 (509)
                      |
T Consensus       476 ~  476 (509)
T KOG2504|consen  476 R  476 (509)
T ss_pred             H
Confidence            4

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.68  E-value=8.7e-08  Score=98.79  Aligned_cols=123  Identities=15%  Similarity=0.069  Sum_probs=90.8

Q ss_pred             ccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---------------
Q 040646          330 GMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG---------------  391 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~---------------  391 (509)
                      .++.+.++++.+....+.   ...++..++.++.+++.||.+||+.+.++.++.+++.+++.+..               
T Consensus        55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~  134 (633)
T TIGR00805        55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST  134 (633)
T ss_pred             hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence            345566667776555443   34477788889999999999999999999999888887776531               


Q ss_pred             -------------c--------------------c-hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHH
Q 040646          392 -------------K--------------------I-WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVR  437 (509)
Q Consensus       392 -------------~--------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~  437 (509)
                                   .                    . .....++.-++.+++.+..++...+++.|.+|++.|+...++.+
T Consensus       135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~  214 (633)
T TIGR00805       135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE  214 (633)
T ss_pred             ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence                         0                    0 01122233344445555666778899999999999999999999


Q ss_pred             HHHhHhhHHHHHHHH
Q 040646          438 QALVFGGVFSPVLVA  452 (509)
Q Consensus       438 ~~~~~g~~i~p~~~~  452 (509)
                      ....+|..+++++.+
T Consensus       215 ~~~~iG~~lG~llgg  229 (633)
T TIGR00805       215 SIAVFGPAFGYLLGS  229 (633)
T ss_pred             HHHHhhhHHHHHHHH
Confidence            999999998888876

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.67  E-value=2.4e-06  Score=82.46  Aligned_cols=114  Identities=24%  Similarity=0.307  Sum_probs=92.8

Q ss_pred             cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccchhhhhhee
Q 040646          107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRATIGTCAIV  184 (509)
Q Consensus       107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~  184 (509)
                      .+..+.......+..++.+++..+.+| +|+|+++.++.++..++.++.-+.+  +.+.+++..++.+++.+...+...+
T Consensus       272 l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wa  350 (467)
T COG2211         272 LFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWA  350 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHH
Confidence            355667777777777889999999999 9999999999999999999998876  7889999999999999999999999


Q ss_pred             eeEeeccC-------cccchhhhhhHHHHHHHHHHHHHH-HHHhc
Q 040646          185 LSTELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI-AYINR  221 (509)
Q Consensus       185 ~i~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~  221 (509)
                      +++|..+-       +.-|...+......=+|..++..+ ++.+.
T Consensus       351 m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         351 MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988752       233566677777777777777655 55443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.67  E-value=1.3e-05  Score=77.67  Aligned_cols=321  Identities=13%  Similarity=0.010  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH----H--HHh---------HHHHHHHHHHHHhhccchhh
Q 040646          115 SFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT----I--FST---------NMWIYSVLRFINGFGRATIG  179 (509)
Q Consensus       115 ~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~----~--~~~---------~~~~l~~~r~l~G~~~g~~~  179 (509)
                      .-.+...+.++..|.+.|| ..|.+++..+.+..-++..+.    .  +..         -+..+++.-.+.|...-...
T Consensus        46 ~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las  124 (432)
T PF06963_consen   46 VRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLAS  124 (432)
T ss_pred             HHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3445566778889999999 999998877665543332222    1  110         11222222222232222211


Q ss_pred             h-hheeeeEeecc------CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeec---
Q 040646          180 T-CAIVLSTELVG------KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVR---  248 (509)
Q Consensus       180 ~-~~~~~i~e~~~------~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~---  248 (509)
                      . ...+.=.||..      ++.+.+..+...-.=-+.-+++|++ |.+....+.+....+.+...++..++=++++.   
T Consensus       125 ~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY  204 (432)
T PF06963_consen  125 IANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVY  204 (432)
T ss_pred             hhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 22233335532      3334445555544455678889998 67777778887776666666554333222221   


Q ss_pred             -CchHHHHhcCCHHHHHHHHHHHHhhcCCcccccc-ccCccccc------ccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646          249 -ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMD-FNNVSFEQ------ETWNVDLYSAIKILVEKKWALRRLSAIMVT  320 (509)
Q Consensus       249 -esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  320 (509)
                       ..|. +..+++.++.           + ...+.+ ..+.+.+.      ++.-++....++..++++.+...+...++.
T Consensus       205 ~~~P~-L~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY  271 (432)
T PF06963_consen  205 NSVPA-LAVKKRSSES-----------E-SSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLY  271 (432)
T ss_pred             HhChH-hcCCCCCccc-----------c-ccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHH
Confidence             1221 1111110000           0 000000 00000000      000011122344555555443333333222


Q ss_pred             HHHHhHhhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH---Hhccch
Q 040646          321 GFGIGMVYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCV---VMGKIW  394 (509)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~---~~~~~~  394 (509)
                      ....++ -..+.-|+...|.+....+..   ..+.++.|+++..++.+|+|..+.-.++......+..+..   +.+...
T Consensus       272 ~TVLsf-~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~  350 (432)
T PF06963_consen  272 FTVLSF-GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP  350 (432)
T ss_pred             HHHhcC-cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            221221 122233444558887666544   4467888899999999999988877666654444333222   222211


Q ss_pred             -hHHHHH----HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646          395 -TSVEIG----LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL  450 (509)
Q Consensus       395 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~  450 (509)
                       ......    ..++.-++.-..--....+..|..|+++||+..|+-+...++...+.-.+
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence             111111    11222233322333567788999999999999999888776665544333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00896 CynX cyanate transporter

Probab=98.67  E-value=1.1e-07  Score=91.87  Aligned_cols=127  Identities=13%  Similarity=0.109  Sum_probs=96.4

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      |.+.++.|.   +..+.+.+.+...++..++.++.|++.|| + +||+.+..+..+.+++.++..+.++..... .-++.
T Consensus       221 p~~~~~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  295 (355)
T TIGR00896       221 PAILISHGA---SAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL  295 (355)
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence            444456677   44478999999999999999999999999 9 567777788888888777777665433332 45678


Q ss_pred             hhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc
Q 040646          172 GFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS  224 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~  224 (509)
                      |++.+...+...+.+.+..+ +++++...++.+....+|..++|.+ +++.++.|
T Consensus       296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999988887776665554 5667888898888888888889888 66666543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.4e-07  Score=86.93  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=106.6

Q ss_pred             HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchh
Q 040646          348 FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTC  427 (509)
Q Consensus       348 ~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  427 (509)
                      ...+.+++.+++.|.+.||+|+|..++++..++..+.+++.+..  .....+..-.+-+.+.........+++++.+|.+
T Consensus       114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d  191 (464)
T KOG3764|consen  114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAFADTSGLAMLADVFPED  191 (464)
T ss_pred             HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc
Confidence            34478889999999999999999999999999999999988843  3444444445666666677778889999999987


Q ss_pred             h-hhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHHHHHHHHHHHhhcc
Q 040646          428 V-RNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       428 ~-r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (509)
                      . |++++|+.-.+..+|-.++|.+.+  ....+...+|+++++++++...+.+++-
T Consensus       192 ~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  192 NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence            6 699999999999999999999988  3445777889999999888877755443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.59  E-value=9.3e-07  Score=87.63  Aligned_cols=112  Identities=19%  Similarity=0.363  Sum_probs=98.6

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccchhhhhheee
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRATIGTCAIVL  185 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~  185 (509)
                      ..+.+..+..++..++.+++++++|| +|+|+.+..+.++.+++.++..+.+  |.+.+++.-++.|++.+...+...++
T Consensus       261 ~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  261 LISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            56778889999999999999999999 9999999999999999999998886  99999999999999999999999999


Q ss_pred             eEeeccC-------cccchhhhhhHHHHHHHHHHHHHH-HHHh
Q 040646          186 STELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI-AYIN  220 (509)
Q Consensus       186 i~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~-~~~~  220 (509)
                      ++|..+.       ++.|...+..+....+|..+++.+ +.++
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            9999873       334778888888888888887776 4443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.59  E-value=1.2e-06  Score=87.74  Aligned_cols=142  Identities=14%  Similarity=0.077  Sum_probs=93.0

Q ss_pred             cccccccCCchHH--HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLY--LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFS  408 (509)
Q Consensus       331 ~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (509)
                      +++..+++|.+..  .......+...++.++.|+++|.+|||..++.+.++..++.++.....  +....++-..+.+++
T Consensus        67 l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~--~~~~~iag~~l~Gvg  144 (599)
T PF06609_consen   67 LPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ--NMNTFIAGMVLYGVG  144 (599)
T ss_pred             HHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--cHHHHHHHHHHHHHh
Confidence            3555566666533  333444577778888999999999999999999999999988887733  333344444444444


Q ss_pred             HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHH
Q 040646          409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLF  475 (509)
Q Consensus       409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~  475 (509)
                      .+.. ......++|..|.+.|..+.++..........++|.+...  ...++.+.+++.++...++.+.
T Consensus       145 aG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  145 AGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             hHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence            4333 3445568999999999888777665555555566766652  2334556666655554444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.57  E-value=7.2e-07  Score=80.66  Aligned_cols=342  Identities=12%  Similarity=0.044  Sum_probs=188.8

Q ss_pred             HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccch
Q 040646          118 MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQ  197 (509)
Q Consensus       118 ~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~  197 (509)
                      -.+.+.-.+.=.+.|- .-.|+++++-.+.......+..+.++.+.+=+.-+..|...+ ...+-++++-+..+|+++.+
T Consensus        53 YSYLv~LvpvFlLTD~-lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqr  130 (433)
T KOG3810|consen   53 YSYLVGLVPVFLLTDY-LRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKR  130 (433)
T ss_pred             HHHHHHHHHHHHHhhh-hhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHH
Confidence            3445555666678898 888999988888888888888899999999999999999865 57778999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcCC---cchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhc
Q 040646          198 VGSIGFFCFTLGFLSLPAIAYINRGS---SWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSE  274 (509)
Q Consensus       198 ~~~~~~~~~~~G~~~~~~~~~~~~~~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~  274 (509)
                      +.+.-.+..-.|-..|..++-++-..   +.+..-.+ .+....++.....++|..++-+.-+.+.++.           
T Consensus       131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~-----------  198 (433)
T KOG3810|consen  131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPRVKRSLYFHRLEDKI-----------  198 (433)
T ss_pred             HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCCCchhhhhhcccccc-----------
Confidence            99999888888888888886443222   23332223 2333333445567788766433322222210           


Q ss_pred             CCccccccccCcccccccc------cccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC-CchH----H
Q 040646          275 NQRSLIMDFNNVSFEQETW------NVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL-SFNL----Y  343 (509)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~----~  343 (509)
                      +    ..+.++...+.+..      -..-+..+.+..++|..+...+-..+...+..-..++....-++. .-+.    .
T Consensus       199 ~----v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG  274 (433)
T KOG3810|consen  199 S----VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNG  274 (433)
T ss_pred             e----eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcC
Confidence            0    00001111000000      011122445556666654444433333333333322222222222 1111    1


Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646          344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL  423 (509)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (509)
                      ..-.+..+.+.++.+..|.+.-.+.|..-+.++......+..++.....+..+...+..++.........++....+++.
T Consensus       275 ~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~n  354 (433)
T KOG3810|consen  275 AVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARN  354 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHh
Confidence            12233446667778888888766666533332222222222223332233444444444444444444555566666677


Q ss_pred             cchhhhhhHHHHHHHHHhHhhHHHHHHHHh----h------cccchhHHHHHHHHHHHHHHHHh
Q 040646          424 FPTCVRNSAISMVRQALVFGGVFSPVLVAA----G------RQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       424 ~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ...+.-|..+|++.++.-+-..+-..+.-.    .      ..-+...|.+++++.++......
T Consensus       355 L~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~  418 (433)
T KOG3810|consen  355 LSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY  418 (433)
T ss_pred             hhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence            777777888888877665544433333211    0      01223456777777766655433

>PRK09669 putative symporter YagG; Provisional

Probab=98.55  E-value=2.6e-06  Score=84.91  Aligned_cols=115  Identities=18%  Similarity=0.243  Sum_probs=87.4

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHhhccchhhhhheeee
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF--STNMWIYSVLRFINGFGRATIGTCAIVLS  186 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  186 (509)
                      .+.+.....++..++.+++++++|| +|+|+.+..+.++.++..+...+  .++.+.+++..++.|++.+...+...+++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666778888899999999999 99999998888766654443333  35677788888999999999999999999


Q ss_pred             EeeccC-------cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc
Q 040646          187 TELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS  224 (509)
Q Consensus       187 ~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~  224 (509)
                      +|..+.       +..|...+.......+|..+++.+ +.+.+..|
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            998862       223556788888888898888887 45544333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.55  E-value=3.2e-07  Score=86.40  Aligned_cols=130  Identities=26%  Similarity=0.447  Sum_probs=108.0

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhhccchhhhhheee
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--MWIYSVLRFINGFGRATIGTCAIVL  185 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~  185 (509)
                      +.++..+.+.++..+++++.|.++|| +|||+.+..+.....++.++.++..+  .+.+++.|++.|++.+...+...++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            57999999999999999999999999 99998888888776666777777776  8999999999999999999999999


Q ss_pred             eEeeccC-cccchhhhhhHH-HHHHHHHHHHHHHHHh---cCCcchHHHHHHHhhHHH
Q 040646          186 STELVGK-KRRGQVGSIGFF-CFTLGFLSLPAIAYIN---RGSSWRRIYLYTSIPTIL  238 (509)
Q Consensus       186 i~e~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~~---~~~~wr~~f~~~~~~~~~  238 (509)
                      +.|+.|+ ++|+...+.... ...+|..+++.++...   ...+||..|.+.......
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            9999987 678888888888 5778888888664322   235799966666555544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.53  E-value=6.4e-08  Score=91.16  Aligned_cols=138  Identities=12%  Similarity=-0.010  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646          344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL  423 (509)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (509)
                      .......+...+.+++.|++.||++|++++.++..+-.++.+...+.  ...+.....-.+.+++.....++...+++|.
T Consensus        72 ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~  149 (493)
T KOG1330|consen   72 LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADS  149 (493)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhc
Confidence            34455567788899999999999999999999998888888877774  3344444444555677777888999999999


Q ss_pred             cchhhhhhHHHHHHHHHhHhhHHHHHHHH---hhcccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646          424 FPTCVRNSAISMVRQALVFGGVFSPVLVA---AGRQNNFLSYGIFGLVIGLCGLFV-IGLPETR  483 (509)
Q Consensus       424 ~p~~~r~~~~g~~~~~~~~g~~i~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  483 (509)
                      +|..+|++++++.+....+|..+|-....   ....++.+.+...+++.++..++. ++.+|.+
T Consensus       150 f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  150 FPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             CcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            99999999999999988777665544433   112224555666666666666554 4444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.50  E-value=4e-06  Score=82.53  Aligned_cols=133  Identities=11%  Similarity=0.059  Sum_probs=106.6

Q ss_pred             HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch
Q 040646          347 TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT  426 (509)
Q Consensus       347 ~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  426 (509)
                      .....+.+++.+.++++.||+|-|+++..+.++.+++.++..+......+..+++-++.+++.+..++....+..+-.|+
T Consensus        80 ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~  159 (466)
T KOG2532|consen   80 SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP  159 (466)
T ss_pred             HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH
Confidence            33447888999999999999999999999999999998888876554444555666777788888999999999999999


Q ss_pred             hhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHHHHHHHHHHHHHHHHhhc
Q 040646          427 CVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       427 ~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      +.|++..++......+|.+++-.+.+..   ..++...|++.+++.++..++.+++
T Consensus       160 ~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  160 NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988777666622   2456777888888877766665433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.46  E-value=1.3e-05  Score=79.31  Aligned_cols=141  Identities=13%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 040646          342 LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTL  421 (509)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (509)
                      ......+..++.+++.+.++.+.||++-.+.+....++..+..++-..  .++.+..+++-++.++..+..+|....++.
T Consensus        83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--~~s~~~~ialr~llGl~es~~wP~~~~~lg  160 (495)
T KOG2533|consen   83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--VHSFPGLIALRFLLGLFESGGWPGVVAILG  160 (495)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            445566667889999999999999999666555554444444333333  334455566667777888889999999999


Q ss_pred             cccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--------hcccchhHHHHHHHHHHHHHHHH-hhccCCCC
Q 040646          422 ELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--------GRQNNFLSYGIFGLVIGLCGLFV-IGLPETRD  484 (509)
Q Consensus       422 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  484 (509)
                      ..+.++.|+.-+|+.+....+|+++++++...        ...++.+.|++-+++.++..++. +++|+...
T Consensus       161 ~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  161 NWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            99999999999999999999999999888764        34567788889888887777664 56775444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.46  E-value=3.4e-06  Score=85.51  Aligned_cols=138  Identities=17%  Similarity=0.144  Sum_probs=101.1

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646          343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE  422 (509)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (509)
                      ........++..++.++.|+++|++|||+.+..+.+...++.++.....  +...+...-++.+++.+....+...+.+|
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            3555666788999999999999999999999999999999988888844  44444444566667777777788899999


Q ss_pred             ccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc---cchhHHHHHHHHHHHHHHHHhhccCC
Q 040646          423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ---NNFLSYGIFGLVIGLCGLFVIGLPET  482 (509)
Q Consensus       423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (509)
                      ..|++.||...+..+....+|..++-.+......   ++...+.+..+.+++..+..+++||+
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes  232 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES  232 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999998888887777333332221   34444444444444444445666764

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.46  E-value=6.2e-07  Score=85.82  Aligned_cols=142  Identities=12%  Similarity=0.145  Sum_probs=99.0

Q ss_pred             CCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHH
Q 040646          338 LSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMG-KIWTSVEIGLELVAFFSACTA  412 (509)
Q Consensus       338 ~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  412 (509)
                      +|++...+..+.+   ...-...+++||++|| +|+|+++..+.++.+++.+++.... .......+.+.++. .+.+..
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~-iG~Gl~  134 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII-VGTGLF  134 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH-hccccc
Confidence            5577666655444   2223467889999999 5999999999999999998888853 22233333333333 555555


Q ss_pred             hHHHHhhcccccchhh--hhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhcc
Q 040646          413 FSLLLIYTLELFPTCV--RNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGLP  480 (509)
Q Consensus       413 ~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (509)
                      =+....+..|.+|++.  |..++++.++..++|++++|++.+..  ..++...|...++...++.+.++..+
T Consensus       135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            5677888999997643  67778888888899999999999833  34455566677776666666655554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.44  E-value=3.5e-05  Score=73.87  Aligned_cols=270  Identities=12%  Similarity=0.110  Sum_probs=129.6

Q ss_pred             HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcC--------------Ccc---hHHHHHHH
Q 040646          171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRG--------------SSW---RRIYLYTS  233 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~--------------~~w---r~~f~~~~  233 (509)
                      .=+-.+.--.++-.+.-....+++++.+......+.+.|..++..+-..+++              .|.   .....+.|
T Consensus       128 L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg  207 (544)
T PF13000_consen  128 LVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWG  207 (544)
T ss_pred             HHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHH
Confidence            3333444555555555566677888888777777777777666544222211              111   12233445


Q ss_pred             hhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcc---cccccccccchhHHHHHHhchHH
Q 040646          234 IPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVS---FEQETWNVDLYSAIKILVEKKWA  310 (509)
Q Consensus       234 ~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~  310 (509)
                      ...++..+...++-+|.|.-.. ..+.+....      .+.+.++...+.++.+   .++...-.+....+.++++-|..
T Consensus       208 ~~~l~~T~~v~~~k~E~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V  280 (544)
T PF13000_consen  208 WVFLIVTILVAFFKKEKPHSES-LPKIEPINK------SDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNV  280 (544)
T ss_pred             HHHHHHHHHHheEeeccccccc-Ccccccccc------ccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchH
Confidence            5555555555666777652100 000000000      0000000011111111   00111112234455667777776


Q ss_pred             HHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhc--Cchh-----------------
Q 040646          311 LRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKL--KRKS-----------------  371 (509)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr~~-----------------  371 (509)
                      +...++....-++....--...+-+-+.|++..... +..+..++..++.++++-|+  |+++                 
T Consensus       281 ~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LA-l~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~  359 (544)
T PF13000_consen  281 QTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLA-LLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKI  359 (544)
T ss_pred             HHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhH-HHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccch
Confidence            665555555555544444444455556677643333 33466677777777776665  2221                 


Q ss_pred             ------------HHHHHHHHHHHHH----HHHHHhccch--hHHHHHH----HHHHHHHHHHHhHHHHhhcccccchhhh
Q 040646          372 ------------SLLGFTIMSGVCS----VLCVVMGKIW--TSVEIGL----ELVAFFSACTAFSLLLIYTLELFPTCVR  429 (509)
Q Consensus       372 ------------~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~r  429 (509)
                                  ....+...-.++.    ......+.+.  +..+..+    -++..+.....+....++-+.+.+|..-
T Consensus       360 ~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IG  439 (544)
T PF13000_consen  360 IRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIG  439 (544)
T ss_pred             hhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence                        1111111111111    1111122111  1112221    2223344444555677888889999999


Q ss_pred             hhHHHHHHHHHhHhhHHHH
Q 040646          430 NSAISMVRQALVFGGVFSP  448 (509)
Q Consensus       430 ~~~~g~~~~~~~~g~~i~p  448 (509)
                      |+.+.+.|+..++|+-...
T Consensus       440 GTYMTLLNTvSNLGGtWP~  458 (544)
T PF13000_consen  440 GTYMTLLNTVSNLGGTWPR  458 (544)
T ss_pred             hHHHHHHHHHHhcCCCchH
Confidence            9999999999999986443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.4e-06  Score=76.72  Aligned_cols=139  Identities=14%  Similarity=0.126  Sum_probs=100.6

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHh
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS-CLLTIFSTNMWIYSVLRFING  172 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~-~~~~~~~~~~~~l~~~r~l~G  172 (509)
                      -.++.||++.   ...+-+.+....-.++.+++.|.++|| +|++.+.+.+..+..+. -.+..|  +++.=.++..+.|
T Consensus       290 fF~~rfGlS~---~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lG  363 (459)
T KOG4686|consen  290 FFQKRFGLSA---VSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLG  363 (459)
T ss_pred             HHHHhhCCCh---hhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHh
Confidence            4578899954   456888888888888999999999999 99998777665544333 222222  3444456677888


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc---chHH-HHHHHhhHHH
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS---WRRI-YLYTSIPTIL  238 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~---wr~~-f~~~~~~~~~  238 (509)
                      +............++-..|+++.|++.|..+...++|..+.|+++ .+.++.|   |--. |++.+..++.
T Consensus       364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~  434 (459)
T KOG4686|consen  364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALT  434 (459)
T ss_pred             hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHH
Confidence            887777666777788888989999999999999999999999994 5554433   4333 4444444444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.42  E-value=9.2e-07  Score=83.30  Aligned_cols=128  Identities=18%  Similarity=0.287  Sum_probs=99.5

Q ss_pred             HHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646          119 GCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--------MWIYSVLRFINGFGRATIGTCAIVLSTELV  190 (509)
Q Consensus       119 ~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~  190 (509)
                      ++..|-.+...++|+ .|||++.+.+.+++++..+..+...|        ...+.+..++.-+|   -......+-+|.+
T Consensus       360 ~~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F  435 (538)
T KOG0252|consen  360 STVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF  435 (538)
T ss_pred             ccCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence            344467788899999 99999999999999999999888776        12233333444444   3334456678999


Q ss_pred             cCcccchhhhhhHHHHHHHHHHHHHH-HHHhc-----CCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          191 GKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR-----GSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       191 ~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      |.+-|+..-|+..+..-+|.+++... .++..     ..+-|..+++.+...++ .++.-+++||+.
T Consensus       436 ParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-gi~~T~l~pEtk  501 (538)
T KOG0252|consen  436 PARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-GILFTLLIPETK  501 (538)
T ss_pred             hHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-hHheeEEeeccc
Confidence            99999999999999999999988876 66666     67889999999988887 456668889984

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.38  E-value=1.2e-05  Score=70.17  Aligned_cols=88  Identities=22%  Similarity=0.234  Sum_probs=65.6

Q ss_pred             ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646           94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF  173 (509)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~  173 (509)
                      .+-+.++.-   +.++|.+.-..+-...+...+.|-++|+ .|||+.-+.-++.+.+++ +.-.++.|-.++++|.+-|+
T Consensus        62 yLYstYgFg---kG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGi  136 (454)
T KOG4332|consen   62 YLYSTYGFG---KGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGI  136 (454)
T ss_pred             eeehhcCcc---CCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhH
Confidence            344556663   3367777666667777788889999999 999997666555555544 34467889999999999999


Q ss_pred             ccchhhhhheeee
Q 040646          174 GRATIGTCAIVLS  186 (509)
Q Consensus       174 ~~g~~~~~~~~~i  186 (509)
                      +.+..+...-++.
T Consensus       137 aTsLLFSaFEsWl  149 (454)
T KOG4332|consen  137 ATSLLFSAFESWL  149 (454)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888776654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.38  E-value=1.5e-05  Score=74.90  Aligned_cols=146  Identities=15%  Similarity=0.152  Sum_probs=115.5

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS---TNMWIYSVLR  168 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r  168 (509)
                      .|.=.+-||++..   +...+......|..++....|++..|+.++|+...+++....++..+..++   .+.+.+...-
T Consensus       232 EPygg~Vfgmsv~---eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~  308 (403)
T PF03209_consen  232 EPYGGEVFGMSVG---ETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV  308 (403)
T ss_pred             CCchhHHcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3555667888655   678888999999999999999988865999998888888887777665443   5788999999


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHH--------hc---CCcchHHHHHHHhhHH
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYI--------NR---GSSWRRIYLYTSIPTI  237 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------~~---~~~wr~~f~~~~~~~~  237 (509)
                      ++.|++.|.......+.+.+...+++.|..+|.+.....++.-++..++..        ..   ..++-.+|.+.++..+
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~  388 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL  388 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887776666666322        11   2456777777777666


Q ss_pred             HHH
Q 040646          238 LYC  240 (509)
Q Consensus       238 ~~~  240 (509)
                      +..
T Consensus       389 ~a~  391 (403)
T PF03209_consen  389 AAL  391 (403)
T ss_pred             HHH
Confidence            543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.33  E-value=0.00038  Score=68.31  Aligned_cols=106  Identities=16%  Similarity=0.008  Sum_probs=58.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhhcCch-hHHHHHHHHHHHHHHHHHHh--c--------cchhHHHHHHHHHHHHHHHHH
Q 040646          344 LSVTFNALSELPASLITFFLIGKLKRK-SSLLGFTIMSGVCSVLCVVM--G--------KIWTSVEIGLELVAFFSACTA  412 (509)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~-~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~  412 (509)
                      ....+..++.++|+.+..+.. .-++| +.+.+..+.=.+..-++.+.  .        -.+.+..+.+.++.++..+..
T Consensus       311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~  389 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL  389 (437)
T ss_pred             HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence            445556688888888665431 11222 12222222222222222111  1        012344444455555656666


Q ss_pred             hHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646          413 FSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL  450 (509)
Q Consensus       413 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~  450 (509)
                      .+....+.++..++++|..+-.+......+|-.+|..+
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777888999998888888777777777776666554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.31  E-value=2.9e-06  Score=79.98  Aligned_cols=124  Identities=13%  Similarity=0.141  Sum_probs=93.6

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCchHHHH-HHHHHHHHHHHHHHHHhHH------
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRKNMLF-LSCLMMSVSCLLTIFSTNM------  161 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr~~l~-~~~~~~~i~~~~~~~~~~~------  161 (509)
                      .|+...+.|+.   ....+.+--...+...+.+|+.|..+||   ||||||.++ .+.++..++.++..++.++      
T Consensus        55 ~tPyl~~lGvp---hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   55 LTPYLQSLGVP---HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             ccHHHHHcCCC---cccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            57777788884   3356666667777788899999999998   899976654 4556667777777777653      


Q ss_pred             -----------HHHHHHHHHHhhccchhhhhheeeeEeeccCcccch-hhhhhHHHHHHHHHHHHHHHH
Q 040646          162 -----------WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQ-VGSIGFFCFTLGFLSLPAIAY  218 (509)
Q Consensus       162 -----------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~  218 (509)
                                 ..++++--+.-++.-.....+-+++.|...++++.+ +++++....++|..+|..++.
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence                       244455555666766778888899999998776666 999999999999988887753

>PRK11462 putative transporter; Provisional

Probab=98.28  E-value=5.5e-05  Score=75.52  Aligned_cols=107  Identities=17%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccchhhhhheeee
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRATIGTCAIVLS  186 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i  186 (509)
                      .+.+.+.+.++..++.+++++++|| +|+|+.+..+..+.++..++..+.+  +...+++.-++.|++.+...+...+++
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~  343 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM  343 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888899999999999999 9999988765555444444433332  233344455667887777777667777


Q ss_pred             EeeccC-------cccchhhhhhHHHHHHHHHHHHHH
Q 040646          187 TELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI  216 (509)
Q Consensus       187 ~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~  216 (509)
                      +|..+.       ++.|...+......-+|..+++.+
T Consensus       344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i  380 (460)
T PRK11462        344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL  380 (460)
T ss_pred             HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            777652       222444566666677777777766

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.25  E-value=3.7e-05  Score=68.67  Aligned_cols=119  Identities=12%  Similarity=0.046  Sum_probs=78.8

Q ss_pred             ccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHH
Q 040646          332 PLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI-----WTSVEIGLEL  403 (509)
Q Consensus       332 ~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  403 (509)
                      |.+.+.++.+......+..   ++..+ .+..|.+.|++|.+.++.++.+...++...+......     ..+....+..
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF  104 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence            4455567887666554443   44444 4788999999999999999999888888777664221     1222222222


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      +++.+.............+.+| ++||++.|+.-....+++.+...+..
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~  152 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYS  152 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHH
Confidence            3322222223344455668888 57999999999999998888777766

>TIGR00788 fbt folate/biopterin transporter

Probab=98.18  E-value=2.4e-06  Score=85.26  Aligned_cols=121  Identities=12%  Similarity=0.004  Sum_probs=101.5

Q ss_pred             eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----------hHHHHHHH
Q 040646           97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----------TNMWIYSV  166 (509)
Q Consensus        97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~  166 (509)
                      +.+|.   +..+.|.+.....++..++....+++.+| ++.|+++.++.++.+++.+.....          ++.+.++.
T Consensus       281 ~~lG~---s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~  356 (468)
T TIGR00788       281 QCLPG---GPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLG  356 (468)
T ss_pred             ccCCC---CcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeee
Confidence            35677   44589999999999999999999999999 999999999999998887654311          33445556


Q ss_pred             HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc
Q 040646          167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR  221 (509)
Q Consensus       167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~  221 (509)
                      .-++.+++.+........++.+..|++++|...+++....++|..+++.++ .+.+
T Consensus       357 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             hhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999999874 4443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.15  E-value=0.00031  Score=64.95  Aligned_cols=291  Identities=13%  Similarity=0.096  Sum_probs=147.7

Q ss_pred             Hhhhhhccc-----cCCCchHHHHH-HHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHhhccchhhhhheeee
Q 040646          124 GLILATLAD-----SSLGRKNMLFL-SCLMMSVSCLLTIF-----------STNMWIYSVLRFINGFGRATIGTCAIVLS  186 (509)
Q Consensus       124 ~~~~g~l~d-----r~~Grr~~l~~-~~~~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i  186 (509)
                      -+.+.++.|     | +||||.-++ +..+.+....+.+.           .++...+....++.-+..+..-.+.-.+.
T Consensus        80 KllWaPiVDs~y~k~-~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwA  158 (510)
T KOG3574|consen   80 KLLWAPIVDSVYSKR-FGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWA  158 (510)
T ss_pred             HHHHHhhhHHHHHHh-hccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            357888888     8 999876433 33333333333332           12333444444556666666667766776


Q ss_pred             EeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcC--------Ccch---------HHHHHHHhhHHHHHHHhheeecC
Q 040646          187 TELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRG--------SSWR---------RIYLYTSIPTILYCILVRFLVRE  249 (509)
Q Consensus       187 ~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~--------~~wr---------~~f~~~~~~~~~~~~~~~~~~~e  249 (509)
                      -....+++-|.+......+...|.+++..+-.....        .+|.         ...++.+.+.++...+..+.-+|
T Consensus       159 LtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke  238 (510)
T KOG3574|consen  159 LTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKE  238 (510)
T ss_pred             HHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            777778888888777777777777666543111110        1221         12333344444433333332233


Q ss_pred             chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646          250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY  329 (509)
Q Consensus       250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  329 (509)
                      .+..     ..+|                           .+...++...-++++++-|..+....+....-++....-.
T Consensus       239 ~~~~-----~~~e---------------------------~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da  286 (510)
T KOG3574|consen  239 NDES-----VDEE---------------------------LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADA  286 (510)
T ss_pred             Cchh-----hhhh---------------------------hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhh
Confidence            2210     0000                           0011111223466777777665555555554455554445


Q ss_pred             ccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcC--chhH--------HHHHHHHHHHHHHHHHHhc---c---c
Q 040646          330 GMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLK--RKSS--------LLGFTIMSGVCSVLCVVMG---K---I  393 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--r~~~--------~~~~~~~~~~~~~~~~~~~---~---~  393 (509)
                      ..++-+-+.|.+......+. +..++..++.++...|+.  .|++        ..+....  ....+....+   .   .
T Consensus       287 ~t~LkLle~Gv~ke~Lal~~-v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~--~~t~Lv~~~~~~~~~~G~  363 (510)
T KOG3574|consen  287 LTSLKLLEHGVPKEELALIA-VPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGL--VQTALVWWTPTLGHSDGT  363 (510)
T ss_pred             ccchHHHHcCCChhHheeee-eehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHH--HHHHHHhhhcccccCCCc
Confidence            55666667777654433322 555666666666655542  2221        1111111  1111112211   1   0


Q ss_pred             hhHHHHHH----HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646          394 WTSVEIGL----ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL  450 (509)
Q Consensus       394 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~  450 (509)
                      .+....++    ..+........+...++..+++.|+...|+.+.+.|+..++|+-.-..+
T Consensus       364 ~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv  424 (510)
T KOG3574|consen  364 FPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTV  424 (510)
T ss_pred             eeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHH
Confidence            01111111    1222233333444567888999999999999999999999987644333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.14  E-value=2.8e-06  Score=60.98  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=65.4

Q ss_pred             CCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040646           90 QAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYS  165 (509)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~  165 (509)
                      |.+|.+++|.++   +..+.|++.+..++||.+|++...++.++ ..+++.+..+++...+..+.+++.++.+.+.
T Consensus        13 plLP~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   13 PLLPLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             hHhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            459999999999   44589999999999999999999999999 8999999999999999999999998877653

Note that many members are hypothetical proteins.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.12  E-value=2.5e-05  Score=71.78  Aligned_cols=149  Identities=17%  Similarity=0.168  Sum_probs=114.7

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+-.|-|+   |+.+.|++.+...+.....++....+++|+-++|+..+....++.++.+.+.+.+.-..+.- -++.
T Consensus       231 LP~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ll  306 (395)
T COG2807         231 LPAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLL  306 (395)
T ss_pred             HHHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Confidence            7899999999   55589999999999999999999999997567888888888888888888888775443333 4899


Q ss_pred             hhccchhhhhheeeeEeeccCcc-cchhhhhhHHHHHHHHHHHHHH-HHHhc-CCcchHHHHHHHhhHHHHHHHhh
Q 040646          172 GFGRATIGTCAIVLSTELVGKKR-RGQVGSIGFFCFTLGFLSLPAI-AYINR-GSSWRRIYLYTSIPTILYCILVR  244 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~G~~~~~~~-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~  244 (509)
                      |+|.|..++....++.+..++.+ -++..++.+....+=..+||.+ |++-+ ..+|+..+...+...++..+..+
T Consensus       307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998876544 3455555555544445667777 55543 35799988887777776554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.11  E-value=4.1e-08  Score=98.16  Aligned_cols=154  Identities=19%  Similarity=0.288  Sum_probs=99.4

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH--H---HhH-----H
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI--F---STN-----M  161 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~--~---~~~-----~  161 (509)
                      .|.+.++.+.+..  .....   ...+...++.++...+.|| +|||+.++.+..+.+++.+..+  .   .++     +
T Consensus       276 ~~~i~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (451)
T PF00083_consen  276 SPSIFENAGISNS--FLATL---ILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI  349 (451)
T ss_pred             ccccccccccccc--ccccc---ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            4566666666432  12222   2334444566677799999 9999999999988888777764  1   111     2


Q ss_pred             HHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646          162 WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~  240 (509)
                      ..+....+.......+..+....+..|.+|.+.|++..++......++..+++.+ ..+.+..+-...+.+.+..+++..
T Consensus       350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~  429 (451)
T PF00083_consen  350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI  429 (451)
T ss_pred             ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence            2222222111112223456667889999999999999999988888888887776 444444442445555566666666


Q ss_pred             HHhheeecCch
Q 040646          241 ILVRFLVRESP  251 (509)
Q Consensus       241 ~~~~~~~~esp  251 (509)
                      +..++++||+.
T Consensus       430 i~~~~~lpET~  440 (451)
T PF00083_consen  430 IFVYFFLPETK  440 (451)
T ss_pred             hheeEEEeeCC
Confidence            67789999983

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.07  E-value=0.015  Score=57.64  Aligned_cols=246  Identities=11%  Similarity=0.126  Sum_probs=129.6

Q ss_pred             ccchhHHHHHH-HHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH--h-------------------------
Q 040646          108 IKGLPASSFFM-GCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS--T-------------------------  159 (509)
Q Consensus       108 ~~~~~~s~~~~-~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~--~-------------------------  159 (509)
                      ....+-....+ ...+...+..++++| ++|.+++-+....+.....++++.  |                         
T Consensus        59 ~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~  137 (491)
T PF03219_consen   59 VIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF  137 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence            34555444444 344556788999999 999998876666655555554442  1                         


Q ss_pred             ----HHHHHHHHHHHHhhccchhhh-hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhc---------CCc
Q 040646          160 ----NMWIYSVLRFINGFGRATIGT-CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR---------GSS  224 (509)
Q Consensus       160 ----~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~---------~~~  224 (509)
                          +.|.+.+..+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+ .++..         ...
T Consensus       138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~  217 (491)
T PF03219_consen  138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDA  217 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence                123333334443333233333 457788999999999999999999999999988776 44444         134


Q ss_pred             chHHHHHHHhhHHHHHH---HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHH
Q 040646          225 WRRIYLYTSIPTILYCI---LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAI  301 (509)
Q Consensus       225 wr~~f~~~~~~~~~~~~---~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (509)
                      |...+.......++.++   ....++.+.       ...++..                 .....+.++++++.....++
T Consensus       218 ~~~~l~~l~~~v~~~g~~i~~~~~~~~~~-------vl~~~~~-----------------~~~~~~~kk~k~k~s~~es~  273 (491)
T PF03219_consen  218 WELSLNSLMGIVLILGIVIILLYRYMNKN-------VLTDPRF-----------------YPSAKKKKKKKPKMSLKESF  273 (491)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCcccc-----------------chhhhcccccCCCccHHHHH
Confidence            65443222211111111   111111110       0000000                 00000011111222234567


Q ss_pred             HHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC-----CchH--HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHH
Q 040646          302 KILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL-----SFNL--YLSVTFNALSELPASLITFFLIGKLKRKSSLL  374 (509)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~  374 (509)
                      +.++++|..+.............+...+......++.     ..+.  +......++..++..++++.+.+|+|-+....
T Consensus       274 k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Al  353 (491)
T PF03219_consen  274 KLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAAL  353 (491)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7788888876666666555565555444322111111     1111  11233345555666678889999999877665


Q ss_pred             HHHH
Q 040646          375 GFTI  378 (509)
Q Consensus       375 ~~~~  378 (509)
                      +.-+
T Consensus       354 itPi  357 (491)
T PF03219_consen  354 ITPI  357 (491)
T ss_pred             HhHH
Confidence            5433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.06  E-value=0.00017  Score=67.45  Aligned_cols=123  Identities=12%  Similarity=-0.029  Sum_probs=89.2

Q ss_pred             ccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI-WTSVEIGLELVA  405 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  405 (509)
                      .+|.+.+.+..+...+.   ...-.+....++..+++.+|+|+|+-++.++.++++++.++.-.... .....+...++.
T Consensus        35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFil  114 (422)
T COG0738          35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFIL  114 (422)
T ss_pred             hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            34666666666544443   33446677888899999999999999999999999998877643222 222223323344


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      ..+.+........++..+.|++....-+.+.+.++.+|.+++|++.+
T Consensus       115 a~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         115 ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             HhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            45555666677888889998887788889999999999999999887

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.06  E-value=0.0095  Score=57.59  Aligned_cols=129  Identities=9%  Similarity=0.096  Sum_probs=87.3

Q ss_pred             CcceeeeeccccccccccchhHHHHHH-HHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---------H-
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFM-GCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---------N-  160 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---------~-  160 (509)
                      +-.+.+.+.++..++....++-+..-+ +..+..++.+.+.++ +.|++++-+.+..+....+++++.-         + 
T Consensus        46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~  124 (509)
T COG3202          46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP  124 (509)
T ss_pred             HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence            456666777765555567777777777 677888999999999 9999998877777776666666531         1 


Q ss_pred             ----------------------HHHHHHHHHHHhhccchhhh-hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-
Q 040646          161 ----------------------MWIYSVLRFINGFGRATIGT-CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-  216 (509)
Q Consensus       161 ----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-  216 (509)
                                            .|...+..+..-+=...... .-.....|.+..+|-.|..++++.+.+++..++..+ 
T Consensus       125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~  204 (509)
T COG3202         125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT  204 (509)
T ss_pred             HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence                                  12222222222222122222 334566788888888999999999999998888777 


Q ss_pred             HHHhc
Q 040646          217 AYINR  221 (509)
Q Consensus       217 ~~~~~  221 (509)
                      .++..
T Consensus       205 ~~~~k  209 (509)
T COG3202         205 SWLSK  209 (509)
T ss_pred             HHHhh
Confidence            45544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.05  E-value=1.9e-05  Score=64.84  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646          112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG  191 (509)
Q Consensus       112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~  191 (509)
                      -.++.+....++.++.+.+.++ +|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..++..-.++.+..+
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            4555666677888888899999 999999999999987655443 56778899999999999999999999999999999


Q ss_pred             CcccchhhhhhHHHHHHHHHHHHHHHHH
Q 040646          192 KKRRGQVGSIGFFCFTLGFLSLPAIAYI  219 (509)
Q Consensus       192 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~  219 (509)
                      ++.|++-.+++......+.++|.++.++
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888888877543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.02  E-value=4.2e-06  Score=80.53  Aligned_cols=136  Identities=15%  Similarity=0.147  Sum_probs=117.7

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheee
Q 040646          106 SLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVL  185 (509)
Q Consensus       106 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  185 (509)
                      +...|.....-..|-++.-++.+++..| +|+-+++.+++....+=.+..++.+|.|+.+-.-+++|+..+..+....+|
T Consensus       405 ~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY  483 (618)
T KOG3762|consen  405 KTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY  483 (618)
T ss_pred             ceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence            4456666666777777888899999999 999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeccCcccchhhhhhHH-HHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646          186 STELVGKKRRGQVGSIGFF-CFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       186 i~e~~~~~~r~~~~~~~~~-~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~  242 (509)
                      ++...||+-|..+.++.+. ..++|--+|.++ +.+...++-|..|.+.++.+++..+.
T Consensus       484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764 457787888888 46677788899999988888875543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.79  E-value=0.0086  Score=55.82  Aligned_cols=147  Identities=14%  Similarity=0.047  Sum_probs=81.7

Q ss_pred             ccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 040646          336 GSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTA  412 (509)
Q Consensus       336 ~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (509)
                      ++.|++......+..   +...+...+.|.++||+|||+..+..+++..++++.--.   ++....+.--+++++.....
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---SNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHH
Confidence            456776544433322   556667778899999999999999998888888764333   22333333345555555555


Q ss_pred             hHHHH-hhcccc----cchhhhhhHHHHHH-HHHhHhhHHHH----HHHHhhcccchhHHHHHHHHHHHHHHHHh-hccC
Q 040646          413 FSLLL-IYTLEL----FPTCVRNSAISMVR-QALVFGGVFSP----VLVAAGRQNNFLSYGIFGLVIGLCGLFVI-GLPE  481 (509)
Q Consensus       413 ~~~~~-~~~~~~----~p~~~r~~~~g~~~-~~~~~g~~i~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  481 (509)
                      ++..- -++.|.    +|++..+..++... ..+.+-.+.++    .+......+...+|.....+.+++.+++. ..+|
T Consensus       139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            44322 233333    56555555555444 22233333333    33333334455667766666666655543 4456


Q ss_pred             CCCC
Q 040646          482 TRDT  485 (509)
Q Consensus       482 ~~~~  485 (509)
                      +.+.
T Consensus       219 Nyg~  222 (354)
T PF05631_consen  219 NYGD  222 (354)
T ss_pred             cCCC
Confidence            5443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.75  E-value=0.00039  Score=67.75  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             HHHHhhhhhHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646          347 TFNALSELPASLITFFLIGKLKR-KSSLLGFTIMSGVCSVLCVVM---GKIWTSVEIGLELVAFFSACTAFSLLLIYTLE  422 (509)
Q Consensus       347 ~~~~~~~~~~~~~~g~l~dr~gr-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (509)
                      ....++..+++++.|+...|.+. |+.++.+.++++++.++....   +....++.+..-++.+++. ......-.|+++
T Consensus        78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR~Y~a~  156 (488)
T KOG2325|consen   78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAVLRAYIAD  156 (488)
T ss_pred             HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHHHHHHHHh
Confidence            33557788889999999999885 777788888888888777432   2222233222233333332 334567788888


Q ss_pred             ccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646          423 LFPTCVRNSAISMVRQALVFGGVFSPVLV  451 (509)
Q Consensus       423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~  451 (509)
                      ..-.+.|.++++.......+|.++||.+.
T Consensus       157 ~s~~~dR~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  157 ASTVEDRPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             ccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence            77778888888877776666666666554

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.66  E-value=0.013  Score=59.55  Aligned_cols=145  Identities=17%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH------------
Q 040646           93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN------------  160 (509)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~------------  160 (509)
                      ..+.++++...   ....-..+.+.-......+.+++++|-.+||-+++.++.++..++..+..++..            
T Consensus        62 ~ylt~~~~~~~---~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~  138 (571)
T KOG1237|consen   62 TYLTLELHASG---GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK  138 (571)
T ss_pred             HHHHHHhccch---HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence            34555666632   345666777777777888999999998789999999999888888665544322            


Q ss_pred             -------------HHHHHHHHHHHhhccchhhhhheeeeEeecc---Ccc---cchhhhhhHHHHHHHHHHHHHH-HHHh
Q 040646          161 -------------MWIYSVLRFINGFGRATIGTCAIVLSTELVG---KKR---RGQVGSIGFFCFTLGFLSLPAI-AYIN  220 (509)
Q Consensus       161 -------------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~---r~~~~~~~~~~~~~G~~~~~~~-~~~~  220 (509)
                                   ...+..+.-+..+|.|+.-+...++-+|-++   +++   +...+.++....++|..++..+ .+.-
T Consensus       139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq  218 (571)
T KOG1237|consen  139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ  218 (571)
T ss_pred             CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence                         2356667778888999999999999999998   322   2356778888888998888777 5666


Q ss_pred             cCCcchHHHHHHHhhHHHHH
Q 040646          221 RGSSWRRIYLYTSIPTILYC  240 (509)
Q Consensus       221 ~~~~wr~~f~~~~~~~~~~~  240 (509)
                      ++.+|.+-|.+..+...+..
T Consensus       219 ~~~~w~lgf~i~~~~~~lai  238 (571)
T KOG1237|consen  219 DNVGWKLGFGIPTVLNALAI  238 (571)
T ss_pred             hcccceeeccHHHHHHHHHH
Confidence            78899999888777666543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.66  E-value=0.00058  Score=67.20  Aligned_cols=133  Identities=21%  Similarity=0.104  Sum_probs=94.7

Q ss_pred             HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhh
Q 040646          349 NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCV  428 (509)
Q Consensus       349 ~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  428 (509)
                      .++..++.+...|.++||+|||..+........+....+.+..    ++..++ .-...+....++...++.++....+.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----~~~~~~-~~l~g~~~~~~s~~~a~vadis~~~~  145 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----YWFFLL-LGLSGGFSAIFSVGFAYVADISSEEE  145 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----HHHhhh-cccccchhhhhhhhhhheeeccchhH
Confidence            3567778889999999999999999888877777766666633    222111 11113334556778899999999999


Q ss_pred             hhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHHHHHHHHHHH-hhccCCCCCC
Q 040646          429 RNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGLVIGLCGLFV-IGLPETRDTQ  486 (509)
Q Consensus       429 r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  486 (509)
                      |....|+.+.....+..++|.+.+  ....+....+.+..+..++..+.. +++||+..++
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            999999999988888889998887  333455556666666666665554 5677755433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.60  E-value=0.00095  Score=64.75  Aligned_cols=104  Identities=15%  Similarity=0.263  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHhhccchhhhhheeeeEeeccCc---ccchhhhhhHHHH
Q 040646          139 NMLFLSCLMMSVSCLLTIFST---------NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKK---RRGQVGSIGFFCF  206 (509)
Q Consensus       139 ~~l~~~~~~~~i~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~  206 (509)
                      |+++++.++..+|.++..++.         +.+.+.++-.+.++|.|+.-|...++++|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888999988855542         2367889999999999999999999999999865   4567788899999


Q ss_pred             HHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646          207 TLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       207 ~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~  242 (509)
                      ++|..++..+ +++-++.+|.+.|.+.++..++..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            9999999887 68888999999999988877775443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.32  E-value=0.01  Score=56.79  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=70.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhHHHHhh--
Q 040646          344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI--WTSVEIGLELVAFFSACTAFSLLLIY--  419 (509)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--  419 (509)
                      ....+..+..++..+.+.|+.||+|-|....++..+.+++..+=.....+  .+...-.+...+....+..++....+  
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPs  162 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPS  162 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcccc
Confidence            44555667888888999999999999999999999888887665443222  01111122333333344444433322  


Q ss_pred             --cccccchhhhhhHHHHHHHHHhHhhHH----HHHHHH
Q 040646          420 --TLELFPTCVRNSAISMVRQALVFGGVF----SPVLVA  452 (509)
Q Consensus       420 --~~~~~p~~~r~~~~g~~~~~~~~g~~i----~p~~~~  452 (509)
                        ..-.+|+++|+++..+..+.+.+|..+    .|++..
T Consensus       163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence              334489999999998888776666554    455554

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.22  E-value=0.035  Score=52.84  Aligned_cols=53  Identities=19%  Similarity=0.078  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646          397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV  449 (509)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~  449 (509)
                      +.+.+..+.++..+-..+....+.++..|++.+..+-.+.......|-..|..
T Consensus       345 ~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~  397 (406)
T KOG1479|consen  345 WFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL  397 (406)
T ss_pred             HHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence            33344444445445555667788899998887766655555444444444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.21  E-value=0.0045  Score=61.18  Aligned_cols=149  Identities=17%  Similarity=0.130  Sum_probs=89.9

Q ss_pred             ccccccCCchHHHHHHHHHhhhhh--HHHHHHHHhhhcC-----chhHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHH
Q 040646          332 PLGLGSLSFNLYLSVTFNALSELP--ASLITFFLIGKLK-----RKSSLLGFTIMSGVCSVLCVVMGKI--WTSVEIGLE  402 (509)
Q Consensus       332 ~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~g~l~dr~g-----r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  402 (509)
                      +++.+++|.++.....+.++..++  ..++.|.++|-+.     ||..++++.++..++.+.+...+..  .......+.
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l   93 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLL   93 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence            345567888888877777766664  4578999999873     5556667777666666666665442  222223333


Q ss_pred             HHHHHHHHHHhHHHHhhccccc---chhhhhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHHHHHHHHHHHh
Q 040646          403 LVAFFSACTAFSLLLIYTLELF---PTCVRNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ++..++......+.-++..|..   |.+ ++..++.......+|++++..+.|  .........+.+.+.+..+..+..+
T Consensus        94 ~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~  172 (433)
T PF03092_consen   94 FLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence            3444444455455556666665   444 777788888888888888877776  2223334445555555544444433


Q ss_pred             -hccC
Q 040646          478 -GLPE  481 (509)
Q Consensus       478 -~~~~  481 (509)
                       +.+|
T Consensus       173 ~~~~e  177 (433)
T PF03092_consen  173 FLLEE  177 (433)
T ss_pred             Hhhhh
Confidence             3444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.16  E-value=0.0003  Score=50.18  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLM  147 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~  147 (509)
                      +|...++.|+   +..++|.+.++..+...++++++|.++|| +|+++.++....+
T Consensus        23 l~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~   74 (77)
T PF12832_consen   23 LPLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF   74 (77)
T ss_pred             hhHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence            5667778888   56699999999999999999999999999 9998877766554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.11  E-value=0.0082  Score=62.10  Aligned_cols=140  Identities=14%  Similarity=0.101  Sum_probs=83.6

Q ss_pred             CCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHHH
Q 040646          338 LSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIW------TSVEIGLELVAFF  407 (509)
Q Consensus       338 ~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  407 (509)
                      ++.+...+..+.+   ...-+..+++|+++|+ +|+++.+..+.++..++..++.+...+.      ....+....+...
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            4555444333322   2333456778888887 6999999998888888877776532111      1111122223334


Q ss_pred             HHHHHhHHHHhhcccccchh---hhhhHHHHHHHHHhHhhHHHHHHHHhhc---------ccchhHHHHHHHHHHHHHHH
Q 040646          408 SACTAFSLLLIYTLELFPTC---VRNSAISMVRQALVFGGVFSPVLVAAGR---------QNNFLSYGIFGLVIGLCGLF  475 (509)
Q Consensus       408 ~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~i~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  475 (509)
                      +.++.-+...+...|.++++   .+...+.+.+...++|+++++.+.....         ..+...|.+.+++++++.++
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            44444556677777777643   3566777788888999988887776322         12444566666666655554


Q ss_pred             Hh
Q 040646          476 VI  477 (509)
Q Consensus       476 ~~  477 (509)
                      ..
T Consensus       178 f~  179 (654)
T TIGR00926       178 FM  179 (654)
T ss_pred             HH
Confidence            43

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.08  E-value=0.004  Score=44.38  Aligned_cols=62  Identities=21%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             HHHHHHHhHhhhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHH
Q 040646          318 MVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIM  379 (509)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~  379 (509)
                      ++.+.+.+..+=..+.+.++.|.++...+.+.+   +..+++.++.|.++||.++++........
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            334444555555678888999999888877766   66788999999999999999887765543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.08  E-value=0.058  Score=53.35  Aligned_cols=140  Identities=10%  Similarity=-0.049  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhHhhhccccccccCCc-----hHHHHHHHHH---h-hhhhHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 040646          313 RLSAIMVTGFGIGMVYYGMPLGLGSLSF-----NLYLSVTFNA---L-SELPASLITFFLIGKLKRKSSLLGFTIMSGVC  383 (509)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~---~-~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~  383 (509)
                      .++...+..++....|+.+-..-+.+..     .+.....+..   + ..++..++-+++++|++|+++...........
T Consensus         8 k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~   87 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGF   87 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHH
Confidence            3444555556666666665333332222     1122222211   2 22333667789999999999877655555555


Q ss_pred             HHHHHHh--ccch---------------------------hHHHHHHHHHHHHHHHHHhH-HHHhhcccccchhhhhhHH
Q 040646          384 SVLCVVM--GKIW---------------------------TSVEIGLELVAFFSACTAFS-LLLIYTLELFPTCVRNSAI  433 (509)
Q Consensus       384 ~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~  433 (509)
                      ..++.+.  +...                           .|....+.+..-.......+ ..|.+++|.+..++..+-.
T Consensus        88 f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy  167 (472)
T TIGR00769        88 FALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFY  167 (472)
T ss_pred             HHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4444432  1100                           11111222222222333444 6799999999999999999


Q ss_pred             HHHHHHHhHhhHHHHHHHH
Q 040646          434 SMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       434 g~~~~~~~~g~~i~p~~~~  452 (509)
                      ++....+++|.+++|.+..
T Consensus       168 ~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       168 ALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998766

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.03  E-value=0.02  Score=47.13  Aligned_cols=103  Identities=10%  Similarity=-0.040  Sum_probs=75.0

Q ss_pred             HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc
Q 040646          346 VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP  425 (509)
Q Consensus       346 ~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  425 (509)
                      ..+.-....+..++.+.+.+++|.|+.++++.+...+.......   +..+..+....+.+++.+..+...-.++.+...
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---PNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            33334555667788899999999999999998887766555433   223444455566667777888887888888888


Q ss_pred             hhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646          426 TCVRNSAISMVRQALVFGGVFSPVLV  451 (509)
Q Consensus       426 ~~~r~~~~g~~~~~~~~g~~i~p~~~  451 (509)
                      ++.+++..++...+...+.++|.++.
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            89999988888777777766666554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.89  E-value=0.056  Score=47.96  Aligned_cols=53  Identities=13%  Similarity=0.243  Sum_probs=34.8

Q ss_pred             cccchhhhhhHHHHHHHHHHHHHH---H-HH--hcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646          193 KRRGQVGSIGFFCFTLGFLSLPAI---A-YI--NRGSSWRRIYLYTSIPTILYCILVRF  245 (509)
Q Consensus       193 ~~r~~~~~~~~~~~~~G~~~~~~~---~-~~--~~~~~wr~~f~~~~~~~~~~~~~~~~  245 (509)
                      |+|+....+...+.++|.++.-+.   . ..  .....|++.+.+.+++.++..++..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888889997765332   2 11  11235999999988887765544433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.68  E-value=0.00052  Score=64.43  Aligned_cols=104  Identities=16%  Similarity=0.066  Sum_probs=3.0

Q ss_pred             HHHHHhhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHH---Hhcc--------chhHHHHHHHHHHHHHHHHHh
Q 040646          346 VTFNALSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCV---VMGK--------IWTSVEIGLELVAFFSACTAF  413 (509)
Q Consensus       346 ~~~~~~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~  413 (509)
                      ..+..++.++|+.+..+..-+. .+|++. +..+.=.+..-++.   ..+.        .+.+..+.+.++.++..+...
T Consensus       188 fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  188 FLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4456688889999887643221 233333 22222222111111   1111        112333333444445555555


Q ss_pred             HHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646          414 SLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL  450 (509)
Q Consensus       414 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~  450 (509)
                      +....+.++..+++.|..+-.+......+|-.+|..+
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             HHHH---------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888898888888777666666666665555443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=96.50  E-value=0.044  Score=49.62  Aligned_cols=135  Identities=16%  Similarity=0.058  Sum_probs=84.6

Q ss_pred             chhHHHHHHHHHHHHhhhhhcccc-CCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646          110 GLPASSFFMGCLAGGLILATLADS-SLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE  188 (509)
Q Consensus       110 ~~~~s~~~~~~~i~~~~~g~l~dr-~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e  188 (509)
                      |.+.-+-.+...+..+.+..+.|| +||.|..  +..++.+.+.++.+++++.++-+++-.+..++.|.....-..+-+.
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~--~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~  142 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIA--LVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR  142 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHH--HHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence            444444555566666667777887 3555543  4556667788888999999999999999888888766665554433


Q ss_pred             eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhc--CCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR--GSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      + +    ....+.++.+.+.+.++|..- +.+.+  +.+-|...++...+-++.+...++.+++++
T Consensus       143 Y-~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe  203 (409)
T KOG3880|consen  143 Y-P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE  203 (409)
T ss_pred             C-C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence            2 2    223445555555556666554 33333  345677777766665555556656665543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.018  Score=56.24  Aligned_cols=107  Identities=21%  Similarity=0.297  Sum_probs=80.2

Q ss_pred             cchhHHHHHHHHHHHHhhhhhcccc--CCCchHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHH
Q 040646          109 KGLPASSFFMGCLAGGLILATLADS--SLGRKNMLFLSCLMMSVSCLLTIFS------------------TNMWIYSVLR  168 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr--~~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r  168 (509)
                      .++..-...+|..++..+.+.+.+|  ++||++.+.++..+..++.++.-..                  +++...++.-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            3333334445555555667777766  5999999999999988888876543                  2466788888


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI  216 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~  216 (509)
                      ++.|++-+.........+.+.. +++|..+.++...-..++..++...
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999 5888888888877777776655444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.31  E-value=0.027  Score=54.95  Aligned_cols=115  Identities=16%  Similarity=0.043  Sum_probs=87.4

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH---H---h----HHHHHHHHHHHHhhc
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF---S---T----NMWIYSVLRFINGFG  174 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~---~---~----~~~~l~~~r~l~G~~  174 (509)
                      ++.++|..-+...+....+.+...++.+| +|..|.-+++.........++..   .   +    +...++.+-.+.-+|
T Consensus       291 s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~G  369 (432)
T PF06963_consen  291 SPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIG  369 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHH
Confidence            55588999999999999999999999999 99988877776655443333322   1   2    344555555666666


Q ss_pred             cchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Q 040646          175 RATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN  220 (509)
Q Consensus       175 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  220 (509)
                      .=+......-++.|..|+++||...|.-.+..++--++...++.+.
T Consensus       370 LW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  370 LWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6667778888999999999999999999988888877777665543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.21  E-value=0.28  Score=47.30  Aligned_cols=149  Identities=17%  Similarity=0.077  Sum_probs=84.9

Q ss_pred             ccccccc-CCchHHH----HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646          331 MPLGLGS-LSFNLYL----SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA  405 (509)
Q Consensus       331 ~~~~~~~-~g~~~~~----~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (509)
                      .|++.+. .|++...    ..-+..-..++..+....+.|.++-|++++...+...+...++.+..  .....-..-+..
T Consensus        27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~~y  104 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQFFY  104 (412)
T ss_pred             hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHHHH
Confidence            3455444 5554322    22233344455667778899999999999998888777777666632  222222222222


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH----HhhcccchhHHHHHHHHHHHHHHHHhhccC
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV----AAGRQNNFLSYGIFGLVIGLCGLFVIGLPE  481 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (509)
                      +.. ...-...++++-...|+++--++.+.......+|..++.++.    ......+.....+......++.+..+++|.
T Consensus       105 g~~-~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  105 GLA-TAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHH-HHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            222 223345567777778888888888887777666655554444    433334433334434444445555566765


Q ss_pred             C
Q 040646          482 T  482 (509)
Q Consensus       482 ~  482 (509)
                      .
T Consensus       184 ~  184 (412)
T PF01770_consen  184 P  184 (412)
T ss_pred             C
Confidence            3

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.02  E-value=0.043  Score=52.66  Aligned_cols=111  Identities=17%  Similarity=0.067  Sum_probs=79.2

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS---CLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV  184 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~  184 (509)
                      +..+....|.+|-.++.--...+  | +-+-+++.+-..+..+.   ....-+.++.|..++.-+..|+..|..++....
T Consensus       282 ~Y~~Y~~~YQ~GVFISRSS~~~~--r-ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  282 QYRWYQLLYQLGVFISRSSLPFF--R-IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHHhhhhcceeee--e-hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            56777777777766664322221  3 43333322222222222   222334678999999999999999999999999


Q ss_pred             eeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc
Q 040646          185 LSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR  221 (509)
Q Consensus       185 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~  221 (509)
                      .+.|-.++++|..+++....+-++|.+++.+++...+
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.01  E-value=0.84  Score=45.58  Aligned_cols=141  Identities=13%  Similarity=0.006  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHhHhhhcc-----ccccccCCchHH--HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 040646          312 RRLSAIMVTGFGIGMVYYGM-----PLGLGSLSFNLY--LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCS  384 (509)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~  384 (509)
                      +.++...+..++..+.+..+     ++..+..|.+..  .-....--+.++..++-.+++++++|.++..+.........
T Consensus        24 ~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF  103 (491)
T PF03219_consen   24 KKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFF  103 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            44555555555555555543     222333333211  11111112344455667889999999998765554444444


Q ss_pred             HHHHHh--cc-----ch----------------------hHHHHHHHHHHHHHHHHHhH-HHHhhcccccchhhhhhHHH
Q 040646          385 VLCVVM--GK-----IW----------------------TSVEIGLELVAFFSACTAFS-LLLIYTLELFPTCVRNSAIS  434 (509)
Q Consensus       385 ~~~~~~--~~-----~~----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g  434 (509)
                      .++++.  +.     ++                      .|....+.+..-.......+ ..|.+++|.++.++..+..+
T Consensus       104 ~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYp  183 (491)
T PF03219_consen  104 ALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYP  183 (491)
T ss_pred             HHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            443331  11     00                      00011111111111122223 46899999999999999999


Q ss_pred             HHHHHHhHhhHHHHHHHH
Q 040646          435 MVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       435 ~~~~~~~~g~~i~p~~~~  452 (509)
                      +.....++|.++++.+..
T Consensus       184 l~g~ganigli~sG~~~~  201 (491)
T PF03219_consen  184 LFGLGANIGLIFSGQLTS  201 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998887765

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.97  E-value=0.17  Score=46.96  Aligned_cols=109  Identities=18%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646          344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL  423 (509)
Q Consensus       344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (509)
                      .......+....+.++.|.+.||.|||+.+..+.....++.+...+................+++.+...+....+..|.
T Consensus        43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  122 (338)
T COG0477          43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEW  122 (338)
T ss_pred             HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            33444446666667899999999999977776665434443333343331222222323333445556667788889999


Q ss_pred             cch-hhhhhHHHHHHH-HHhHhhHHHHHHHH
Q 040646          424 FPT-CVRNSAISMVRQ-ALVFGGVFSPVLVA  452 (509)
Q Consensus       424 ~p~-~~r~~~~g~~~~-~~~~g~~i~p~~~~  452 (509)
                      .|. +.|+...+.... ...+|..++|.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T COG0477         123 FPEATERGLAVGLVTLGAGALGLALGPLLAG  153 (338)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887 667888887777 46677777775554

>PRK03612 spermidine synthase; Provisional

Probab=95.41  E-value=0.13  Score=52.05  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=78.4

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHH--H-HHHHHHH----HHHhHH-HHHHHHHHHHhhccc
Q 040646          105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLM--M-SVSCLLT----IFSTNM-WIYSVLRFINGFGRA  176 (509)
Q Consensus       105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~--~-~i~~~~~----~~~~~~-~~l~~~r~l~G~~~g  176 (509)
                      +..+.+.+.++++.|.++|+.+++++.++ .-|+ ....-+.+  . +++..+.    ++...+ ..++..-++.|+..|
T Consensus        48 s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (521)
T PRK03612         48 SVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG  125 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44478999999999999999999888744 3333 22221111  1 1111111    111111 223344566788888


Q ss_pred             hhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HH-HhcCCcchHHHHHHHhhHHHHHHH
Q 040646          177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AY-INRGSSWRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       177 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~-~~~~~~wr~~f~~~~~~~~~~~~~  242 (509)
                      +..|....+..+... ++-++..|-......+|.++|.++ ++ +++..|-....++.+.+.++.+++
T Consensus       126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~  192 (521)
T PRK03612        126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV  192 (521)
T ss_pred             HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            888887666554322 234566777888888888888888 43 455566554444555555444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.51  E-value=0.0061  Score=61.68  Aligned_cols=152  Identities=14%  Similarity=0.104  Sum_probs=1.2

Q ss_pred             cccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc----c------c----
Q 040646          331 MPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG----K------I----  393 (509)
Q Consensus       331 ~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~----~------~----  393 (509)
                      ++.+-+.++++....+.+.+   ++.++..++..++.+|..|-+.+-.+.++++++.+++.+-.    .      .    
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~  105 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG  105 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence            45556677887777766655   66677777778888887777788888888888887766521    0      0    


Q ss_pred             ------------------------------hhHHHHHHH----HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHH
Q 040646          394 ------------------------------WTSVEIGLE----LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQA  439 (509)
Q Consensus       394 ------------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  439 (509)
                                                    .......++    ++.+++....+++..+|+-|..+++..+...|+....
T Consensus       106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             ----------------------------------------------SSS-------------------------------
T ss_pred             ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                                          000011112    2233444556778889999999999999999998888


Q ss_pred             HhHhhHHHHHHHH----h----hc----------------ccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646          440 LVFGGVFSPVLVA----A----GR----------------QNNFLSYGIFGLVIGLCGLFVIGLPET  482 (509)
Q Consensus       440 ~~~g~~i~p~~~~----~----~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (509)
                      ..+|..+|=++.+    .    ..                ..++..|++.+.+.++.++.++.+|+.
T Consensus       186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            7777665533332    0    00                112334566666666666666666653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.11  E-value=0.12  Score=49.87  Aligned_cols=134  Identities=16%  Similarity=0.056  Sum_probs=80.0

Q ss_pred             HHHHHHhHhhhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhh----cCchhHHHH-HHHHHHHHHHHHHHh
Q 040646          319 VTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGK----LKRKSSLLG-FTIMSGVCSVLCVVM  390 (509)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr----~gr~~~~~~-~~~~~~~~~~~~~~~  390 (509)
                      ...++...-..+.+.+++++|.+-.....+..   +.+++..++.|..+||    +|||+..+. +.....++++++.+.
T Consensus        43 Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a  122 (498)
T KOG0637|consen   43 GVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA  122 (498)
T ss_pred             HHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH
Confidence            33444444455566677777877555544433   5566777888999996    688776654 444444555544442


Q ss_pred             c--------cch---hHHHHHHHHHHH----HHHHHHhHHHHhhcccccchhhhhh-HHHHHHHHHhHhhHHHHHHHH
Q 040646          391 G--------KIW---TSVEIGLELVAF----FSACTAFSLLLIYTLELFPTCVRNS-AISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       391 ~--------~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .        ...   ....+.+.+++.    +.........-++..|+..++.+.+ +.+....+..+|+.++=.+..
T Consensus       123 aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  123 ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            1        111   112233333332    3333455667788899887776666 888888888888876544443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.56  E-value=6.3  Score=36.68  Aligned_cols=72  Identities=11%  Similarity=0.120  Sum_probs=54.7

Q ss_pred             HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646          118 MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG  191 (509)
Q Consensus       118 ~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~  191 (509)
                      +..+.++.+.+.+..+ +|-|.++.++...+... +..-+-+.|..++-.-...|++.+..+..--+|+++...
T Consensus        69 ~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3344455555577888 99999999888776543 222234678899999999999999999999999988764

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.20  E-value=0.47  Score=34.31  Aligned_cols=63  Identities=14%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             ccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc
Q 040646          330 GMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK  392 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~  392 (509)
                      .+|.+.++.+++......+   ..++.++|.+...++.++.++++.+..+.+...+....+.+...
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3588888888887666544   34888899999999988888888888888888888887777443

Note that many members are hypothetical proteins.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=93.00  E-value=2.6  Score=39.85  Aligned_cols=36  Identities=8%  Similarity=-0.007  Sum_probs=27.5

Q ss_pred             HHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646          414 SLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV  449 (509)
Q Consensus       414 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~  449 (509)
                      ....-...|..|.+.|..+.|+.|.....-..+--+
T Consensus       405 lAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~i  440 (503)
T KOG2601|consen  405 LAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDI  440 (503)
T ss_pred             HHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHh
Confidence            345667889999999999999998887665544333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.68  E-value=0.81  Score=44.36  Aligned_cols=107  Identities=19%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHh--ccch------hHHHHHHHHHHHHHHHHHhHHHHhhcccccchh---hhhhHHHHHHHH
Q 040646          371 SSLLGFTIMSGVCSVLCVVM--GKIW------TSVEIGLELVAFFSACTAFSLLLIYTLELFPTC---VRNSAISMVRQA  439 (509)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~  439 (509)
                      +++.++.++..++.+++.+.  +...      ....+.+. +..++.++.=+...++..|.++++   .|...+...+..
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~-lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLA-LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHH-HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHH-HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            45667777777777774442  2221      12333333 334556666677888888888765   455667777888


Q ss_pred             HhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHhh
Q 040646          440 LVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVIG  478 (509)
Q Consensus       440 ~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  478 (509)
                      .++|..+++.+.....  .++...|.+.++..+++.+..+.
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            8999999888777433  45555666666666665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.59  E-value=3.3  Score=40.98  Aligned_cols=110  Identities=13%  Similarity=0.158  Sum_probs=74.8

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCch--HHHHH--HHHHHHHHHHHHHH---------HhHHHHHHHHHHHHhhcc
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRK--NMLFL--SCLMMSVSCLLTIF---------STNMWIYSVLRFINGFGR  175 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr--~~l~~--~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~  175 (509)
                      .-.....|.+|-.+|..+..+.. . -++|  .+.+.  .=+++.-..++|..         -++-+..++.-++.|+..
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            34556666777677666444321 1 1222  33322  22233333334432         245667777899999999


Q ss_pred             chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Q 040646          176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN  220 (509)
Q Consensus       176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  220 (509)
                      |-.....+.+..+..++++|..+..+...+..+|..+|..++++.
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887553

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.58  E-value=10  Score=37.51  Aligned_cols=101  Identities=11%  Similarity=-0.045  Sum_probs=63.9

Q ss_pred             hhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh--cc-----c-----------hh------------HHHHHH
Q 040646          352 SELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM--GK-----I-----------WT------------SVEIGL  401 (509)
Q Consensus       352 ~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~--~~-----~-----------~~------------~~~~~~  401 (509)
                      +.++..++-.++.+++.+.++..........+.+++++.  +.     +           .+            |....+
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~  153 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF  153 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence            445566777888899998888766555555544444432  10     0           00            222222


Q ss_pred             HHHHHHHHHHHhH-HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          402 ELVAFFSACTAFS-LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       402 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .+..=.......+ ..|..++|....++..+-.++.+...+++..+++.+..
T Consensus       154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~  205 (509)
T COG3202         154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS  205 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            2222222223333 56889999999999999999999999999888877765

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=92.51  E-value=2.6  Score=37.21  Aligned_cols=33  Identities=15%  Similarity=0.065  Sum_probs=20.5

Q ss_pred             hHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646          355 PASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC  387 (509)
Q Consensus       355 ~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~  387 (509)
                      +..+-+-+++.|+..|++.+.+.++..+..+..
T Consensus       255 lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~  287 (294)
T KOG2881|consen  255 LAVIGGKYLASKISVRTVTLIGGILFIIFGLVY  287 (294)
T ss_pred             HHHhhhHHHhhhheeEEEEEecchhHHHHHHHH
Confidence            333444567888888887776666655554433

>PRK03612 spermidine synthase; Provisional

Probab=92.12  E-value=7.4  Score=39.58  Aligned_cols=45  Identities=11%  Similarity=0.062  Sum_probs=24.6

Q ss_pred             HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      +..++..|...-+..+... +.-+...|-.+....+|+++|+++.+
T Consensus       122 ~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~  166 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP  166 (521)
T ss_pred             HHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence            4445555554444433222 12345566666777777777777666

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.86  E-value=0.45  Score=49.21  Aligned_cols=153  Identities=12%  Similarity=0.047  Sum_probs=96.1

Q ss_pred             ccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc-------------------
Q 040646          334 GLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG-------------------  391 (509)
Q Consensus       334 ~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~-------------------  391 (509)
                      .-+.++.+....+.+.+   ++..+...+..+..-|..|-+.+-++.++++++.++..+..                   
T Consensus       123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~  202 (735)
T KOG3626|consen  123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN  202 (735)
T ss_pred             hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence            33445555444444333   66666677777787888888888888888888877766520                   


Q ss_pred             c---------------------------chhHHHHHHHH----HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH
Q 040646          392 K---------------------------IWTSVEIGLEL----VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL  440 (509)
Q Consensus       392 ~---------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  440 (509)
                      .                           ........+++    +.+++....++...+|+-|...++......|+...+.
T Consensus       203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence            0                           00011122222    2233334456677889999999998899999999888


Q ss_pred             hHhhHHHHHHHH----hhc-----------------ccchhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 040646          441 VFGGVFSPVLVA----AGR-----------------QNNFLSYGIFGLVIGLCGLFVIGLPETRDTQ  486 (509)
Q Consensus       441 ~~g~~i~p~~~~----~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (509)
                      .+|.++|=++.+    ...                 ..++..|++.+.+.++.++.++++|+..++.
T Consensus       283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence            777776655544    110                 0123457777888888888888888765543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.24  E-value=1  Score=43.15  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=88.1

Q ss_pred             CCcceeeeeccccc-cccccchhHHH-HHHHHHHHHhhhhhccccCCCchHHHHHHHH--HHHHHHHHH------HHHhH
Q 040646           91 AHTSIISEWDLECA-SSLIKGLPASS-FFMGCLAGGLILATLADSSLGRKNMLFLSCL--MMSVSCLLT------IFSTN  160 (509)
Q Consensus        91 ~~~~i~~~~~~~~~-~~~~~~~~~s~-~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~--~~~i~~~~~------~~~~~  160 (509)
                      ..|.+..|-.-+.. +++..-.+..+ |.+.-.+|.+...++-++  +||...+..++  ++.-...+|      .+-.+
T Consensus       265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~  342 (406)
T KOG1479|consen  265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFES  342 (406)
T ss_pred             ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHHHHHHHHHHHHhccCCCCceecC
Confidence            45666655543332 24445556666 888888887777777665  44544333222  111111211      22346


Q ss_pred             HHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHH
Q 040646          161 MWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYI  219 (509)
Q Consensus       161 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  219 (509)
                      -+++++.-.+.|+..|=.....+.+..+-.+++++..+..+.......|...|..++++
T Consensus       343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            67888999999999999999999999999999999999889888899999999888765

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=89.75  E-value=3.1  Score=37.26  Aligned_cols=105  Identities=14%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             cchhHHHHHHHHHHHHhhhhhccccCCCchHHHH----HHHHHHHHHHHHHHH-H----hHHHHHHHHHHHHhhccchhh
Q 040646          109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLF----LSCLMMSVSCLLTIF-S----TNMWIYSVLRFINGFGRATIG  179 (509)
Q Consensus       109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~  179 (509)
                      .....-++..|+.+|.+..|.+...++.||+.+.    .+++++.++.+.... .    .++..+++.-++.|+..=+..
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4556667777888888888888876577777665    345555555554212 1    136677888888887743333


Q ss_pred             hhheeeeEeeccCcccchhhhhhHHHHHHHHHHHH
Q 040646          180 TCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLP  214 (509)
Q Consensus       180 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~  214 (509)
                      ++ .-.+..-+++..+.+..-.++..+++|.++-.
T Consensus       223 ~V-iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yT  256 (267)
T PF07672_consen  223 GV-ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYT  256 (267)
T ss_pred             HH-HhcChhhhcCCCcceehhHHHHHHHHHHHHHH
Confidence            33 33344444444444444455566777765433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=88.51  E-value=13  Score=35.55  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=31.3

Q ss_pred             ccccccccCCchHHHHHHHHHhhhhhH--HHHHHHHhh-----hcCchhHHH-HHHHHHHHHHHHHHH
Q 040646          330 GMPLGLGSLSFNLYLSVTFNALSELPA--SLITFFLIG-----KLKRKSSLL-GFTIMSGVCSVLCVV  389 (509)
Q Consensus       330 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~g~l~d-----r~gr~~~~~-~~~~~~~~~~~~~~~  389 (509)
                      .+|++++.-+.+-.... +.++..-+-  -+++..+.|     |+||||..+ -+..+.+..+..+..
T Consensus        52 ~iP~lL~ak~vSyt~~a-~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~  118 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQA-IFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSY  118 (510)
T ss_pred             hhHHHhcCCCcchhhhh-hhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhh
Confidence            67888886666533222 222222222  345566666     999998654 344444444444443

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.30  E-value=4.9  Score=30.05  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS  151 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~  151 (509)
                      +.+.-.++=+++..+.....|++.||.+|.+|+.++..++.+.+
T Consensus        43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~   86 (116)
T COG5336          43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG   86 (116)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            44556666777777777888999999667788776666555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	509
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRG 222
           + + R I G G       + +   EL     RG++ S   F    G L +  + Y I R 
Sbjct: 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188
Query: 223 SS--------WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI 270
                     WR ++    IP +L+ +L+ + V ESPRWL  +G++E+A  I++ I
Sbjct: 189 GDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKI 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	509
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	4e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 58/403 (14%), Positives = 125/403 (31%), Gaps = 56/403 (13%)

Query: 110 GLPASSFFMGCLAGGLILATLADSSLGRKNM---LFLSCLMMSVSCLLTIFSTNMWIYSV 166
           G   S   +       I+ +++D S  R  +   L L+  +M     +   ++++ +  V
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLG--FLSLPAIAYINRGSS 224
           L F+ G+ +                +K RG + S+      +G     L  +  +   + 
Sbjct: 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184

Query: 225 WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFN 284
           W       +   IL  +    ++R++P+                 +   E  ++   D  
Sbjct: 185 WHAALYMPAFCAILVALFAFAMMRDTPQ--------------SCGLPPIEEYKNDYPDDY 230

Query: 285 NVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLS-FNLY 343
           N   EQE       +A +I ++     + L  I +    + ++ YG+      L     Y
Sbjct: 231 NEKAEQEL------TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI------LDWSPTY 278

Query: 344 LSVTFNALSELPASLIT--FFLIG-------------KLKRKSSLLGFTIMSGVCSVLCV 388
           L    +  +   +S     +   G               +      G   M+ V     V
Sbjct: 279 LKEVKH-FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337

Query: 389 VMGKIWTSVEIGLELVAFFSACTAFSLLLIYTL--ELFPTCVRNSAISMVRQ-ALVFGGV 445
                  +  + +  +          ++LI     EL P     +A         + G V
Sbjct: 338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397

Query: 446 FSPVLVAA-----GRQNNFLSYGIFGLVIGLCGLFVIGLPETR 483
            +  +V       G    F+      ++  +  + V+   + R
Sbjct: 398 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 440

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 10/162 (6%)

Query: 110 GLPASSFFMGCLAGGLILATLADSSLGRK----NMLFLSCLMMSVSCLLTIFSTNMWIYS 165
                 +    + G L+   ++D           + F++ + ++        + N  +  
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350

Query: 166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLG--FLSLPAIAYINRGS 223
           +   + GF          + + EL  KK  G           LG    +   + Y     
Sbjct: 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410

Query: 224 SWRRIYLYTSIPTILYCIL-VRFLVRESPRWLFIQGRKEEAV 264
            W   ++     +IL  IL +  ++ E  R    +   +E V
Sbjct: 411 GWDGGFMVMIGGSILAVILLIVVMIGEKRR---HEQLLQELV 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 45/364 (12%), Positives = 101/364 (27%), Gaps = 145/364 (39%)

Query: 243 VRFLVRESPRWLFIQGRKEEAVS-------------IIKSISTSENQRSLIMDFNNVSFE 289
              L      W  +  ++EE V              ++  I T + Q S++     +   
Sbjct: 64  TLRLF-----WTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIEQR 116

Query: 290 QETWN-VDLYSAIKILV---EKKWALRRLSAIMVTGFGIGMVYYGMPLGLG-S------- 337
              +N   +++  K  V   +    LR+  A++       ++  G+  G G +       
Sbjct: 117 DRLYNDNQVFA--KYNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVL-GSGKTWVALDVC 171

Query: 338 ---------------LSF--------------NLYLSVT--FNALSELPASLI--TFFLI 364
                          L+                L   +   + + S+  +++      + 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 365 GKLKR-------KSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG---------LELVAFFS 408
            +L+R       ++ LL   ++  V +       K W +  +           ++  F S
Sbjct: 232 AELRRLLKSKPYENCLL---VLLNVQNA------KAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 409 ACTAFSLLLI---------YTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNF 459
           A T   + L              L    +      + R+ L      +P           
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--TT--NP----------- 327

Query: 460 LSYGIFGLVIGLCGLFVIGLPETRDT-------QLSDTM-------DEEEYKERAAAAGF 505
                    + +    +     T D        +L+  +       +  EY++      F
Sbjct: 328 -------RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----F 375

Query: 506 NRLV 509
           +RL 
Sbjct: 376 DRLS 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 68/541 (12%), Positives = 157/541 (29%), Gaps = 158/541 (29%)

Query: 1   MSDSTPILTQSDLESRPSLGETIERCIGDFSSAQLV----------QAFLVSIAWFFDAQ 50
           + +   +  + ++ SR      + + + +   A+ V              + +   +  Q
Sbjct: 119 LYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 51  QTF-ISVFTDAEPTW------HCTDDSCNGVSNLC-QLPKNSWSWDLQAHTSIISEWDLE 102
                 +F      W      +  +     +  L  Q+  N   W  ++  S   +  + 
Sbjct: 178 CKMDFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIH 228

Query: 103 CASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSC--LLTIFSTN 160
              + ++ L  S  +  CL   L+L  + ++               ++SC  LLT  +  
Sbjct: 229 SIQAELRRLLKSKPYENCL---LVLLNVQNAKAWNA---------FNLSCKILLT--TRF 274

Query: 161 MWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFF--CFTLGFLSLP---- 214
                V  F++        T  I L    +                        LP    
Sbjct: 275 K---QVTDFLSA-----ATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVL 323

Query: 215 -----AIAYI--------NRGSSWRRIY----------------------LYTS------ 233
                 ++ I            +W+ +                       ++        
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 234 ---IPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQ 290
              IPTIL  ++          W      K + + ++  +     + SL+        ++
Sbjct: 384 SAHIPTILLSLI----------WF--DVIKSDVMVVVNKLH----KYSLV----EKQPKE 423

Query: 291 ETWNV-DLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL-----SFNLY- 343
            T ++  +Y  +K+ +E ++AL R    +V  + I   +    L    L     S   + 
Sbjct: 424 STISIPSIYLELKVKLENEYALHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 344 LSVTFNA--LSELPASLITF-FLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400
           L    +   ++      + F FL  K++  S+    +    + + L  +  K +      
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS--GSILNTLQQL--KFYKPY--- 533

Query: 401 LELVAFFSACTAFSLLLIYTLELF-----PTCVRNSAISMVRQALVFGGVFSPVLVAAGR 455
                       +   L+  +  F        + +    ++R AL+       +   A +
Sbjct: 534 -----ICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHK 585

Query: 456 Q 456
           Q
Sbjct: 586 Q 586

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 19/146 (13%), Positives = 55/146 (37%), Gaps = 18/146 (12%)

Query: 114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF 173
            ++ +      L    ++D  +GR+ ++ +   +  ++ L+ + ++++ +      + G 
Sbjct: 42  GAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGM 100

Query: 174 GRATIGTCAIVLSTELV----GKKRRGQVGSIGFFCFTLGFLSLPAIA-----YINRGSS 224
           G         V++  L      + +     S+      +G L  P +A      ++   +
Sbjct: 101 G----TGVGGVMARTLPRDLYERTQLRHANSL----LNMGILVSPLLAPLIGGLLDTMWN 152

Query: 225 WRRIYLYTSIPTILYCILVRFLVRES 250
           WR  YL+  +        +   + E+
Sbjct: 153 WRACYLFLLVLCAGVTFSMARWMPET 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	509
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.94
2xut_A	524	Proton/peptide symporter family protein; transport	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.28
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.25
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.17
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.16
2xut_A	524	Proton/peptide symporter family protein; transport	99.01
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.95

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.5e-42  Score=348.96  Aligned_cols=427  Identities=18%  Similarity=0.259  Sum_probs=302.6

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccc-----cc
Q 040646           32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECA-----SS  106 (509)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~  106 (509)
                      +|.+.+.++.+++.+..++|...++..                                 +|.++++|+...+     ++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   54 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGT---------------------------------VESLNTVFVAPQNLSESAAN   54 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGT---------------------------------HHHHHHHHTGGGCCCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhcCCCCCCcccHH
Confidence            678888888899999999998777664                                 6777777754321     24


Q ss_pred             cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHH
Q 040646          107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI------------------FSTNMWIYSVLR  168 (509)
Q Consensus       107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r  168 (509)
                      .+.|++.+++.+|..+|++++|+++|| +|||+++.++.+++.+++++++                  +++|+++++++|
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R  133 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR  133 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence            578899999999999999999999999 9999999999999999999999                  478999999999


Q ss_pred             HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHH
Q 040646          169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILY  239 (509)
Q Consensus       169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~  239 (509)
                      +++|++.|+..+....+++|++|+++|++..++.+.+..+|.++++.++...         ...+||+.+.+..++.++.
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF  213 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999998886432         1246888888877777775


Q ss_pred             HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH
Q 040646          240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV  319 (509)
Q Consensus       240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  319 (509)
                       +...+++||||+|+..+++.+++.+.+++........+...+.     ++...+.++.......++.+..........+
T Consensus       214 -~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (491)
T 4gc0_A          214 -LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI-----KHSLDHGRKTGGRLLMFGVGVIVIGVMLSIF  287 (491)
T ss_dssp             -HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHSCCTHHHHHHHHHHH
T ss_pred             -hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH-----HHHHHhhhhhhhHHHHhcccHHHHHHHHHHH
Confidence             4666889999999999999999988888776532211110000     0000011111112223333332222222222


Q ss_pred             HH-HHHhHhhhccccccccCCchH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh--ccc
Q 040646          320 TG-FGIGMVYYGMPLGLGSLSFNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM--GKI  393 (509)
Q Consensus       320 ~~-~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~--~~~  393 (509)
                      .. .+.....++.+...+..+.+.   .....+.++..+++.++++++.||+|||+.++.+.....++++.+...  ...
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~  367 (491)
T 4gc0_A          288 QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA  367 (491)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc
Confidence            22 223334444455555555443   334455668888999999999999999999998888777776655442  122


Q ss_pred             hhHHHHHHHHHHHHH-HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--------hcccchhHHHH
Q 040646          394 WTSVEIGLELVAFFS-ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--------GRQNNFLSYGI  464 (509)
Q Consensus       394 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--------~~~~~~~~~~~  464 (509)
                      ..........+...+ .....++.+.+.+|++|++.|+++.|+.+..+.++++++|.+...        ...+....+.+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i  447 (491)
T 4gc0_A          368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI  447 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            222222222222222 223346778999999999999999999999999888877766531        12233455677


Q ss_pred             HHHHHHHHHHHH-hhccCCCCCCCcccHHHHHHhH
Q 040646          465 FGLVIGLCGLFV-IGLPETRDTQLSDTMDEEEYKE  498 (509)
Q Consensus       465 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  498 (509)
                      ++++++++.++. +++||||+|++||.++.-+++.
T Consensus       448 ~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          448 YGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            777777776664 6889999999987655444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=6.1e-38  Score=311.89  Aligned_cols=394  Identities=13%  Similarity=0.037  Sum_probs=290.1

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646           32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL  111 (509)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  111 (509)
                      +.+++.+..++++.+..+.+.......                                 +|.+.+|+ +   +..+.|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~-~---s~~~~g~   66 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALA---------------------------------MPYLVEQG-F---SRGDLGF   66 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHH---------------------------------HHHTTSST-T---CSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHh-c---cHhHHHH
Confidence            567777888888888888776555443                                 68888898 7   4558999


Q ss_pred             hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646          112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF----STNMWIYSVLRFINGFGRATIGTCAIVLST  187 (509)
Q Consensus       112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  187 (509)
                      +.+++.++..++++++|+++|| +|||++++++.++.+++.+++++    ++|++.++++|++.|++.+...+...+++.
T Consensus        67 ~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~  145 (451)
T 1pw4_A           67 ALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV  145 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence            9999999999999999999999 99999999999999999999999    999999999999999999999999999999


Q ss_pred             eeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc-chHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646          188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS-WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS  265 (509)
Q Consensus       188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~  265 (509)
                      |++|+++|++++++.+.+..+|.+++|.++ .+....+ ||+.|++.+++.++..++.++++||+|+....++. ++   
T Consensus       146 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---  221 (451)
T 1pw4_A          146 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE---  221 (451)
T ss_dssp             TTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT---
T ss_pred             HHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh---
Confidence            999999999999999999999999999995 6677788 99999999988887776777788988752110000 00   


Q ss_pred             HHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHHH
Q 040646          266 IIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYL  344 (509)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~  344 (509)
                               .  +.+.+ ++.+.+++++...+....+++++++.++...+..++..+.........|.++++ .|.+...
T Consensus       222 ---------~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  289 (451)
T 1pw4_A          222 ---------Y--KNDYP-DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK  289 (451)
T ss_dssp             ---------T--CCC--------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH
T ss_pred             ---------h--ccccc-ccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence                     0  00000 000000001111111124667778877766666666666555555556666665 7777654


Q ss_pred             H---HHHHHhhhhhHHHHHHHHhhhc--CchhHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHh
Q 040646          345 S---VTFNALSELPASLITFFLIGKL--KRKSSLLGFTIMSG-VCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLI  418 (509)
Q Consensus       345 ~---~~~~~~~~~~~~~~~g~l~dr~--gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (509)
                      .   ....+++.+++.++.+++.||+  +||+.+..+..+.. ++.+++.+.+..+.+......++.+++.....+....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  369 (451)
T 1pw4_A          290 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL  369 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHH
Confidence            4   3445577889999999999999  99998887776665 4444444433223333333344444555556667788


Q ss_pred             hcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHhhc
Q 040646          419 YTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       419 ~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      +..|.+|++.|+++.|+.+....+ |..++|.+.+.  ...++...+.+.+++.+++.++.++.
T Consensus       370 ~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 99999999883  23345566667677666666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1.8e-34  Score=285.77  Aligned_cols=344  Identities=11%  Similarity=0.076  Sum_probs=261.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchh
Q 040646           33 AQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLP  112 (509)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  112 (509)
                      .++..+.++++..+..+++.......                                 .|.+++++|+   +..+.|++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~g~---s~~~~g~~   66 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDIL---------------------------------LPQFQQAFTL---TNFQAGLI   66 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHSCC---CSHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHH---------------------------------HHHHHHHcCC---CHHHHHHH
Confidence            34555566666677777776555553                                 7889999999   55589999


Q ss_pred             HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646          113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT---IFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL  189 (509)
Q Consensus       113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~  189 (509)
                      .+.+.+++.++++++|+++|| +|||++++++.++.+++.+++   +++++++.+++.|++.|++.+...+...+++.|+
T Consensus        67 ~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  145 (438)
T 3o7q_A           67 QSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence            999999999999999999999 999999999999999999999   8889999999999999999999999999999999


Q ss_pred             ccCcccchhhhhhHHHHHHHHHHHHHHH-HHh-cCCc-------------------------chHHHHHHHhhHHHHHHH
Q 040646          190 VGKKRRGQVGSIGFFCFTLGFLSLPAIA-YIN-RGSS-------------------------WRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~-~~~~-------------------------wr~~f~~~~~~~~~~~~~  242 (509)
                      +|+++|++++++.+.+.++|.++++.++ .+. ...+                         ||+.|++.+++.++..++
T Consensus       146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  225 (438)
T 3o7q_A          146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL  225 (438)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999994 555 4444                         999998877776665443


Q ss_pred             hh-eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646          243 VR-FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG  321 (509)
Q Consensus       243 ~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  321 (509)
                      .. ...||+++.                     .             ++++++++...++++++++|.++...+..++..
T Consensus       226 ~~~~~~p~~~~~---------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (438)
T 3o7q_A          226 IMLTKFPALQSD---------------------N-------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYV  271 (438)
T ss_dssp             HHHCCCCCCTTT---------------------C-------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHcCCccccc---------------------c-------------cccccccchhhhHHHHHhChHHHHHHHHHHHHH
Confidence            32 234444310                     0             000111223346788899988777666666555


Q ss_pred             HHHhHhhhccccc-ccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhH
Q 040646          322 FGIGMVYYGMPLG-LGS-LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTS  396 (509)
Q Consensus       322 ~~~~~~~~~~~~~-~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (509)
                      ..........+.+ .++ .|.+....   .....++.+++.++.+++.||+|||+.+..+.++..++.+++.+.+  ...
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  349 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHV  349 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHH
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcH
Confidence            5554444445555 554 37765544   3444577888999999999999999999988888877776666633  222


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .... .++.+++.+..++..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.+
T Consensus       350 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g  402 (438)
T 3o7q_A          350 GLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMG  402 (438)
T ss_dssp             HHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHH
Confidence            2233 23444556667788888989999977 888888776 66789999999888

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=2e-32  Score=265.22  Aligned_cols=318  Identities=14%  Similarity=0.130  Sum_probs=241.0

Q ss_pred             CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646           92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN  171 (509)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  171 (509)
                      +|.+.+++|.   +..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++.+++++++.+++.|++.
T Consensus        23 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~   98 (375)
T 2gfp_A           23 IADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQ   98 (375)
T ss_dssp             HHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            6888999999   55589999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      |++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++ .+.+..+||+.|++.+++.++..+...+.+||+
T Consensus        99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (375)
T 2gfp_A           99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET  178 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred             HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence            9999999999999999999999999999999999999999999995 555556899999999888887665566778887


Q ss_pred             hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646          251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG  330 (509)
Q Consensus       251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (509)
                      |+.   ++                +                  +++...++++++++|.++...+..++...........
T Consensus       179 ~~~---~~----------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (375)
T 2gfp_A          179 RPV---DA----------------P------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEAC  221 (375)
T ss_dssp             STT---TC----------------C------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC---Cc----------------c------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            531   00                0                  0011123456777887766666666666666555666


Q ss_pred             ccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHH-HHHHHH--HHHHhccchhHHHHHHHH
Q 040646          331 MPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIM-SGVCSV--LCVVMGKIWTSVEIGLEL  403 (509)
Q Consensus       331 ~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~  403 (509)
                      .|.+.++ .|.+......+   ..++.+++.++.+++.||.+++  +..+... ...+..  ........+.+......+
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (375)
T 2gfp_A          222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAA  299 (375)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHH
Confidence            6777665 67765554433   3466777788888888888772  2222222 122111  111111122333333344


Q ss_pred             HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      +.+++.+...+....+..|..| ++|+++.|+.+....+|..++|.+.+.
T Consensus       300 l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          300 LFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             HHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             HHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666677788889999998 889999999999999999998888773

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=1.8e-30  Score=260.97  Aligned_cols=379  Identities=13%  Similarity=0.063  Sum_probs=237.0

Q ss_pred             eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 040646           96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG  174 (509)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~  174 (509)
                      ++|+|+   +..+.+++.+.+.++..++++++|+++|| + |||+++..+.++.+++.+++++++|++.++++|++.|++
T Consensus        46 ~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  121 (491)
T 4aps_A           46 TGDLHI---TRATAASIMAIYASMVYLSGTIGGFVADR-IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIG  121 (491)
T ss_dssp             HTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHH
T ss_pred             hhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            345898   55589999999999999999999999998 6 999999999999999999999999999999999999999


Q ss_pred             cchhhhhheeeeEeeccCcc--cchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          175 RATIGTCAIVLSTELVGKKR--RGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       175 ~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      .+...+...+++.|++|+++  |+.++++++.+.++|..++|.+ +.+.+..|||+.|++.++..++..+...+..|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          122 TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            99999999999999999988  7778888999999999999999 56677789999999987776664444333222211


Q ss_pred             H----HHHhcCCHHHHHHHHHH--------------HHhhcCCccccccccCccc-----c---cccccccchhHHHHHH
Q 040646          252 R----WLFIQGRKEEAVSIIKS--------------ISTSENQRSLIMDFNNVSF-----E---QETWNVDLYSAIKILV  305 (509)
Q Consensus       252 ~----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~l~  305 (509)
                      +    ....+.+.++..+..+.              ... .+..+.+........     .   .....++...+..+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (491)
T 4aps_A          202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL-VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL  280 (491)
T ss_dssp             CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH-HSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            0    00001122222221111              000 010000000000000     0   0000000000000000


Q ss_pred             hchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCch---HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHH-----HH
Q 040646          306 EKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFN---LYLSVTFNALSELPASLITFFLIGKLKRKSSLL-----GF  376 (509)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~-----~~  376 (509)
                      +..............+..........+.+.++ .+.+   .........+..+++.++.+++.||++||+...     .+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~  360 (491)
T 4aps_A          281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG  360 (491)
T ss_dssp             -CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence            11111122222222233333222223333322 2222   333445556777778889999999999986544     55


Q ss_pred             HHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646          377 TIMSGVCSVLCVVMG-------KIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV  449 (509)
Q Consensus       377 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~  449 (509)
                      ..+.+++.+++....       ....+......++.+++.+...+....+..|.+|++.|+++.|+.+....+|..++|.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~  440 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ  440 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555554444321       1123333333444455555666788899999999999999999999999999999999


Q ss_pred             HHHhh-cccchhHHHHHHHHHHHHHHHHhhc
Q 040646          450 LVAAG-RQNNFLSYGIFGLVIGLCGLFVIGL  479 (509)
Q Consensus       450 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  479 (509)
                      +.+.. ..+....+.+++++.+++.++.+..
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          441 LVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             HGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            98843 3344556666666666665554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.94  E-value=6e-27  Score=229.72  Aligned_cols=354  Identities=12%  Similarity=0.038  Sum_probs=215.5

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHH---HHHHHhHHH-HHHHHHHH
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCL---LTIFSTNMW-IYSVLRFI  170 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~---~~~~~~~~~-~l~~~r~l  170 (509)
                      +++++|+   +..+.|++.+.+.+++.++++++|+++|| +|||++++++..+.+++..   ...+++... .+...+++
T Consensus        34 l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (417)
T 2cfq_A           34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV  109 (417)
T ss_dssp             HHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHG
T ss_pred             HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567888   45589999999999999999999999999 9999999998887765322   122333221 24556777


Q ss_pred             HhhccchhhhhheeeeEeeccC--cccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646          171 NGFGRATIGTCAIVLSTELVGK--KRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLV  247 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~  247 (509)
                      .|++.+...+.....+.++.++  ++|+...+....+..+|..++|.++ ++.+ .+||+.|++.+++.++..+. .++.
T Consensus       110 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~-~~~~  187 (417)
T 2cfq_A          110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVL-LFFA  187 (417)
T ss_dssp             GGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHH-SCSS
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH-HHHc
Confidence            7776666555555545555543  4567777888788888999999884 4443 57999999887776554333 3334


Q ss_pred             c-CchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646          248 R-ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM  326 (509)
Q Consensus       248 ~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  326 (509)
                      + |+|+    +.+              ..  +.+    +     +++++....++++++++|.++...+..+........
T Consensus       188 ~~~~~~----~~~--------------~~--~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T 2cfq_A          188 KTDAPS----SAT--------------VA--NAV----G-----ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             CCCCSC----SSC--------------SS--SSS----S-----SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             Cccccc----ccc--------------cc--ccc----c-----cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence            4 3321    000              00  000    0     000111223466788888765544433322222221


Q ss_pred             hhhcccccccc-CC---chH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646          327 VYYGMPLGLGS-LS---FNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI  399 (509)
Q Consensus       327 ~~~~~~~~~~~-~g---~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (509)
                      .....|.++.+ .+   .+.   .....+..++.+++.++.++++||+|||+.+..+..+.++..+.+.+..  +.+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~  316 (417)
T 2cfq_A          239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVV  316 (417)
T ss_dssp             HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHH
Confidence            11112322221 12   112   1223344466778899999999999999998887777766655544422  222222


Q ss_pred             HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHH-HHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH
Q 040646          400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMV-RQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      ....+..+......+..+.+..|.+|++.|+++.++. +....+|+.++|.+.+...  .+....+.+.+++.+++.++.
T Consensus       317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~  396 (417)
T 2cfq_A          317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            2222233333344455678999999999999999985 7778899999999888322  233445666666666666554


Q ss_pred             h-hccCCCCC
Q 040646          477 I-GLPETRDT  485 (509)
Q Consensus       477 ~-~~~~~~~~  485 (509)
                      + ..+|+++.
T Consensus       397 ~~~~~~~~~~  406 (417)
T 2cfq_A          397 VFTLSGPGPL  406 (417)
T ss_dssp             TTSSCCSCTT
T ss_pred             HhhhcCCCch
Confidence            3 34554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.93  E-value=2.7e-26  Score=232.38  Aligned_cols=145  Identities=11%  Similarity=0.127  Sum_probs=129.5

Q ss_pred             eeeeec------cccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHh-HHHHHHH
Q 040646           95 IISEWD------LECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFST-NMWIYSV  166 (509)
Q Consensus        95 i~~~~~------~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~  166 (509)
                      +.+++|      +   +..+.+++.+.+.++..++++++|+++|| + |||+++.++.++.+++.+++++++ +++.+++
T Consensus        39 l~~~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (524)
T 2xut_A           39 LMTALLLSIPEEL---RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT  114 (524)
T ss_dssp             HHHSCSSCCSSST---TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHhcccccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            455666      7   45589999999999999999999999999 9 999999999999999999999999 9999999


Q ss_pred             HHHHHhhccchhhhhheeeeEeeccCcccchhhhh---hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646          167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSI---GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL  242 (509)
Q Consensus       167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~  242 (509)
                      .|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|.+++|.+ +.+.+..+||+.|++.+++.++..+.
T Consensus       115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  194 (524)
T 2xut_A          115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF  194 (524)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999877666   889999999999998 56777789999999988877665444


Q ss_pred             h
Q 040646          243 V  243 (509)
Q Consensus       243 ~  243 (509)
                      .
T Consensus       195 ~  195 (524)
T 2xut_A          195 F  195 (524)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.28  E-value=8.3e-12  Score=123.26  Aligned_cols=142  Identities=15%  Similarity=0.115  Sum_probs=121.9

Q ss_pred             eeccccccccccchhHHHHHHHHHHHHhhhhhccccCC--CchHHHHHHHHHHH-HHHHHHHHH--hHHHHHHHHHHHHh
Q 040646           98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL--GRKNMLFLSCLMMS-VSCLLTIFS--TNMWIYSVLRFING  172 (509)
Q Consensus        98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~--Grr~~l~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G  172 (509)
                      .+|+   +..+.+++.+...++..++.++.|++.|| +  |||+.+..+..+.. ++.++..+.  .+.+.+.+..++.|
T Consensus       282 ~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  357 (451)
T 1pw4_A          282 VKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG  357 (451)
T ss_dssp             BSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            3777   44478999999999999999999999999 9  99999888877766 666666665  36788888889999


Q ss_pred             hccchhhhhheeeeEeeccCcccchhhhhhHHHHHH-HHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646          173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTL-GFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV  243 (509)
Q Consensus       173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~  243 (509)
                      ++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+ +.+.+..||+..|++.++..++..+..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  430 (451)
T 1pw4_A          358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  430 (451)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            998988888899999999999999999999999999 99999998 678888899999999888777755443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.27  E-value=9.2e-11  Score=115.30  Aligned_cols=128  Identities=9%  Similarity=0.004  Sum_probs=99.3

Q ss_pred             HhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh-ccchhHHHHHH
Q 040646          326 MVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM-GKIWTSVEIGL  401 (509)
Q Consensus       326 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  401 (509)
                      ......|.+.++++.+.....   ....++..++.++.|+++||+|||+.+..+.++.+++.++.... ..++.+..+..
T Consensus        44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  123 (438)
T 3o7q_A           44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG  123 (438)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            333445667777887765544   34447778899999999999999999999999988888777321 12334444455


Q ss_pred             HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646          402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA  453 (509)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~  453 (509)
                      .++.+++.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.
T Consensus       124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666677777788889999999999999999999999999999999998873

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.25  E-value=4.2e-12  Score=124.05  Aligned_cols=143  Identities=13%  Similarity=0.152  Sum_probs=119.8

Q ss_pred             ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646          108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLST  187 (509)
Q Consensus       108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  187 (509)
                      ..++..+...++..++.++.|+++|| +|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT  338 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888889999999999999 99999999998888888777777778888888888888887777777788999


Q ss_pred             eeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646          188 ELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESP  251 (509)
Q Consensus       188 e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp  251 (509)
                      |.+|++.|+++.++ ++....+|..++|.+ +.+.+..|++..|.+.++..++..+..+...||.+
T Consensus       339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999999998 588888999999998 66777778899999888887776655556666653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.17  E-value=3.5e-10  Score=112.99  Aligned_cols=137  Identities=10%  Similarity=0.097  Sum_probs=101.0

Q ss_pred             CCchHHHHH---HHHHhhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 040646          338 LSFNLYLSV---TFNALSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAF  413 (509)
Q Consensus       338 ~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (509)
                      +|.+.....   ....++..++.++.|+++|| +|||+.+..+.++.+++.+++.+..  +.+......++.+++.+...
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF--GASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--STTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhcc
Confidence            677765544   44457788899999999999 8999999999998888887776633  33334444455566677777


Q ss_pred             HHHHhhcccccchhh--hhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH
Q 040646          414 SLLLIYTLELFPTCV--RNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV  476 (509)
Q Consensus       414 ~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  476 (509)
                      +...+++.|.+|++.  |+.+.++.+....+|..++|.+.+..  ..++...+.+.++..+++.+..
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            888999999999988  77788888899999999999988832  2345556666655555544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.16  E-value=2.2e-10  Score=110.17  Aligned_cols=161  Identities=11%  Similarity=0.019  Sum_probs=115.2

Q ss_pred             HHHhHhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646          322 FGIGMVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVE  398 (509)
Q Consensus       322 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (509)
                      +.........|.+.++.|.+......   ...++..++.++.|+++||+|||+.+..+..+..++.++....  ++.+..
T Consensus        14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l   91 (375)
T 2gfp_A           14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVL   91 (375)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred             HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence            33344444456677788887655543   3447777889999999999999999999998888888777763  334444


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc--cchhHHHHHHHHHHHHHHH-
Q 040646          399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ--NNFLSYGIFGLVIGLCGLF-  475 (509)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~-  475 (509)
                      ....++.+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+....  ++...+.+.++..++..+. 
T Consensus        92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  171 (375)
T 2gfp_A           92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSM  171 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            4445555666667778888999999999999999999999999999999999884333  3344555555555544442 


Q ss_pred             HhhccCCCC
Q 040646          476 VIGLPETRD  484 (509)
Q Consensus       476 ~~~~~~~~~  484 (509)
                      .+.+||+++
T Consensus       172 ~~~~~~~~~  180 (375)
T 2gfp_A          172 ARWMPETRP  180 (375)
T ss_dssp             CCSSCCCST
T ss_pred             HHHCcccCC
Confidence            345565543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.01  E-value=4.1e-09  Score=106.12  Aligned_cols=137  Identities=9%  Similarity=0.089  Sum_probs=98.2

Q ss_pred             chHH---HHHHHHHhhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHH
Q 040646          340 FNLY---LSVTFNALSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSL  415 (509)
Q Consensus       340 ~~~~---~~~~~~~~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (509)
                      .+..   .......++.+++.++.|+++||+ |||+.+..+.++.+++.+++.+... +.+..+...++.+++.+...+.
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~  129 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-SVQGFYTGLFLIALGSGGIKPL  129 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhccccchh
Confidence            5543   344455577888999999999999 9999999998888888777776431 3333444445555666677788


Q ss_pred             HHhhcccccchhhhhhHHHH---HHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646          416 LLIYTLELFPTCVRNSAISM---VRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       416 ~~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      ..+++.|.+|++.|+++.+.   .+....+|..++|.+.+..  ..++...+.+.+++.+++.+..+
T Consensus       130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999876666   7888899999999887732  23445556666665555444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.95  E-value=1.1e-08  Score=102.13  Aligned_cols=104  Identities=14%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHHHHHH
Q 040646          349 NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG----------------KIWTSVEIGLELVAFFSACTA  412 (509)
Q Consensus       349 ~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~  412 (509)
                      ..++.++|.++.|+++||+|||+.+.++.++..++.++..+..                .++....++.-++.+++.+..
T Consensus        64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~  143 (491)
T 4gc0_A           64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3477889999999999999999999999998888887766421                233444555556667777888


Q ss_pred             hHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646          413 FSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA  452 (509)
Q Consensus       413 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~  452 (509)
                      .+....++.|..|++.|+...++.+....+|..+++.+..
T Consensus       144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~  183 (491)
T 4gc0_A          144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY  183 (491)
T ss_dssp             HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence            8899999999999999999999999888888877776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	509
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	9e-13

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 67.8 bits (164), Expect = 9e-13
 Identities = 55/376 (14%), Positives = 121/376 (32%), Gaps = 16/376 (4%)

Query: 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF----STNMWIYS 165
           G   S   +       I+ +++D     +  L    ++ +   L   F    ++++ +  
Sbjct: 62  GFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI--AYINRGS 223
           VL F+ G+ +                +K RG + S+      +G    P +    +   +
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180

Query: 224 SWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDF 283
            W       +   IL  +    ++R++P+   +   +E         +    Q       
Sbjct: 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 240

Query: 284 NNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLY 343
               F Q      L   I I     + LR         +   + ++ +       S   Y
Sbjct: 241 ----FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL-----DKSSWAY 291

Query: 344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL 403
               +  +            + +  R ++ + F  +  + +++  +      +V++   +
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351

Query: 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYG 463
           V  F       L+ ++ LEL P     +A          GG  +   +     + F   G
Sbjct: 352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 411

Query: 464 IFGLVIGLCGLFVIGL 479
            F ++IG   L VI L
Sbjct: 412 GFMVMIGGSILAVILL 427

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	509
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.43
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.17

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-36  Score=294.80  Aligned_cols=393  Identities=12%  Similarity=0.016  Sum_probs=271.3

Q ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646           31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG  110 (509)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  110 (509)
                      .|++|.++.+++++++..+.+.......                                 .|.++ |+|+   +..+.|
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~---------------------------------~p~~~-~~g~---s~~~~g   62 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALA---------------------------------MPYLV-EQGF---SRGDLG   62 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHH---------------------------------HHHTT-SSTT---CSSCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHH-HhCc---CHHHHH
Confidence            4789999999999999888887666664                                 56665 5798   555899


Q ss_pred             hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHhhccchhhhhheeee
Q 040646          111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST----NMWIYSVLRFINGFGRATIGTCAIVLS  186 (509)
Q Consensus       111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i  186 (509)
                      ++.+++.+++.++++++|+++|| +|||+++.++.++.+++.+++++++    +++.+++.|++.|++.|...+....++
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  141 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM  141 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            99999999999999999999999 9999999999999999999988765    677999999999999999999999999


Q ss_pred             EeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHh-cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHH
Q 040646          187 TELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YIN-RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAV  264 (509)
Q Consensus       187 ~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~  264 (509)
                      .|++|+++|++++++.+.+..+|..+++.++ ... ...+||+.|++.+++.++..++.+.+.+|+|+.......     
T Consensus       142 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  216 (447)
T d1pw4a_         142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-----  216 (447)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-----
T ss_pred             HHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-----
Confidence            9999999999999999999999999999874 333 345799999999988888777777778877642100000     


Q ss_pred             HHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccc-ccccCCchHH
Q 040646          265 SIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPL-GLGSLSFNLY  343 (509)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~  343 (509)
                                 ++..++..++.+.+.+.+...+....+..++++..+......++............+. ..+..+.+..
T Consensus       217 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (447)
T d1pw4a_         217 -----------EEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD  285 (447)
T ss_dssp             -----------TTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH
T ss_pred             -----------hhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccc
Confidence                       0000000011111111222223334566677776655555555444444443333444 4445566544


Q ss_pred             H---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHHhHHHH
Q 040646          344 L---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCV---VMGKIWTSVEIGLELVAFFSACTAFSLLL  417 (509)
Q Consensus       344 ~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (509)
                      .   ...+..+..+++.++.+++.||++|++..........+......   .....+.+......++.+++.....+...
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  365 (447)
T d1pw4a_         286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG  365 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   34455577889999999999999987654433333322222222   22233334433434444455555567778


Q ss_pred             hhcccccchhhhhhHHHHHHHHHhHh-hHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHh
Q 040646          418 IYTLELFPTCVRNSAISMVRQALVFG-GVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVI  477 (509)
Q Consensus       418 ~~~~~~~p~~~r~~~~g~~~~~~~~g-~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  477 (509)
                      .+..|.+|++.|+++.|+.+....++ .+++|.+.+.  ...+....+.+.+++.+++.++..
T Consensus       366 ~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         366 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999888774 5667888773  333445556666555555555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-25  Score=217.71  Aligned_cols=352  Identities=12%  Similarity=-0.004  Sum_probs=229.5

Q ss_pred             eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHH
Q 040646           95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIY----SVLRFI  170 (509)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l----~~~r~l  170 (509)
                      +++++|+   +..+.|++.+++.++..++++++|+++|| +|||++++++..+..++..+..+..+....    ++.+.+
T Consensus        34 l~~~~g~---s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (417)
T d1pv7a_          34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV  109 (417)
T ss_dssp             HHHHHCC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHH
T ss_pred             HHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            6678899   55589999999999999999999999999 999999999999999999888887765543    455555


Q ss_pred             HhhccchhhhhheeeeEeeccC--cccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhheeec
Q 040646          171 NGFGRATIGTCAIVLSTELVGK--KRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVR  248 (509)
Q Consensus       171 ~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~  248 (509)
                      .+.+.+...........+..++  +++.+..+........|..+++.++......+|+..+........+..+...+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (417)
T d1pv7a_         110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             TTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhc
Confidence            5555555555444444444332  34556677777888888889998865555556777777767666666667777777


Q ss_pred             CchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhh
Q 040646          249 ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVY  328 (509)
Q Consensus       249 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  328 (509)
                      |+|+.   +.+.++.                          ++.++........+.++++..+.................
T Consensus       190 ~~~~~---~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (417)
T d1pv7a_         190 DAPSS---ATVANAV--------------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD  240 (417)
T ss_dssp             CSCSS---SCSSHHH--------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc---hhhhhhh--------------------------hhhcccccccccccccccccccchhhhhHHHHHHHHhhh
Confidence            76531   0111100                          001111112223334444443333333332222222211


Q ss_pred             ----hccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 040646          329 ----YGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGL  401 (509)
Q Consensus       329 ----~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (509)
                          ..........+.+...   ......++..++..+.+++.||.++|+.+..+..+.+++.+.+.+.+  +.+.....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  318 (417)
T d1pv7a_         241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVIL  318 (417)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred             ccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHH
Confidence                1222233333333322   23344467778888899999999999999999888888877766643  34444445


Q ss_pred             HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHH-HHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH-h
Q 040646          402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVR-QALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV-I  477 (509)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~  477 (509)
                      .++.+++.+...+...++..|.+|++.|+++.++.. ....+|..++|.+.+..  ..+....+.+.+++.++..++. +
T Consensus       319 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         319 KTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            555566667777888999999999999999999865 45678999999988732  3345556677777666665554 3


Q ss_pred             hccC
Q 040646          478 GLPE  481 (509)
Q Consensus       478 ~~~~  481 (509)
                      .+++
T Consensus       399 ~l~~  402 (417)
T d1pv7a_         399 TLSG  402 (417)
T ss_dssp             HSCC
T ss_pred             hhcC
Confidence            4443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.1e-13  Score=132.24  Aligned_cols=144  Identities=13%  Similarity=0.160  Sum_probs=128.4

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheee
Q 040646          106 SLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVL  185 (509)
Q Consensus       106 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~  185 (509)
                      ....+...+...++..++.++.+++.|| +|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+...++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  336 (417)
T d1pv7a_         258 TRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3467788888999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeccCcccchhhhhh-HHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646          186 STELVGKKRRGQVGSIG-FFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES  250 (509)
Q Consensus       186 i~e~~~~~~r~~~~~~~-~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es  250 (509)
                      +.|.+|+++|+++.++. +....+|..++|.+ +++.+..||+..|++.+++.++..++..+.++++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999975 56778999999988 6888888999999999888887766666666543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.2e-10  Score=112.31  Aligned_cols=149  Identities=12%  Similarity=0.012  Sum_probs=103.1

Q ss_pred             cccccccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHH
Q 040646          331 MPLGLGSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK--IWTSVEIGLELVA  405 (509)
Q Consensus       331 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  405 (509)
                      .|.. ++.|.+..   .......++..++.++.|+++||+|||+.+..+.++.+++.++..+...  ..........++.
T Consensus        48 ~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (447)
T d1pw4a_          48 MPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC  126 (447)
T ss_dssp             HHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred             HHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Confidence            3544 45677644   4445555778889999999999999999999999888888777665321  1223334444555


Q ss_pred             HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh---hcccchhHHHHHHHHHHHHHHHH-hhcc
Q 040646          406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA---GRQNNFLSYGIFGLVIGLCGLFV-IGLP  480 (509)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~  480 (509)
                      +++.+..++....++.|.+|+++|+.++++.+....+|..++|.+.+.   ...++...+.+.+.+.++..++. ...+
T Consensus       127 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence            566667778888999999999999999999999999999988877652   12233344455554444444443 3443