Citrus Sinensis ID: 040654

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
MAANSELAGDIEGEYGGNRVQPFATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPSQNLHTIK
ccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccccccEEEEEcHHHHHHHHHHHHHHcccccccccc
ccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccccccccccccccccccccHHHEEEEEEEEEEEEEEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccEEEEccHHHHHHHHHHHHHHHcccccHccc
maanselagdiegeyggnrvqpfatpkqeqRLMDeekkqnpstwkkilgfediFSVKVWRASMAELLGTAVLVFALDTIVISSiqtdtktpnLVMSTLVAIIITILLIatfpisgghinpLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAhnfslggctlnvvvpgpdgpveiglGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVtaqkgyagaglnparclgpalvrgghlwdrhwvfwAGPAIACVAFALYTklipsqnlhtik
maanselagdiegeyggnrvqpfatpKQEQRLMdeekkqnpstwkkilgfEDIFSVKVWRASMAELLGTAVLVFALDTIVISsiqtdtktpnlVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKgyagaglnpaRCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPSQNLHTIK
MAANSELAGDIEGEYGGNRVQPFATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVaiiitilliatFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPSQNLHTIK
******************************************TWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIP********
************************************************GFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIP*Q******
********GDIEGEYGGNRVQPFATPKQ*************STWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPSQNLHTIK
*********D**************************KKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPSQNL****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAANSELAGDIEGEYGGNRVQPFATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPSQNLHTIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query306 2.2.26 [Sep-21-2011]
Q7XLR1282 Probable aquaporin PIP2-6 yes no 0.748 0.812 0.325 2e-21
P61838286 Aquaporin PIP1.1 OS=Vicia N/A no 0.800 0.856 0.333 8e-21
P61837286 Aquaporin PIP1-1 OS=Arabi yes no 0.800 0.856 0.333 8e-21
Q06611286 Aquaporin PIP1-2 OS=Arabi yes no 0.813 0.870 0.311 9e-21
Q7XSQ9288 Probable aquaporin PIP1-2 no no 0.833 0.885 0.301 2e-20
Q08451286 Probable aquaporin PIP-ty N/A no 0.885 0.947 0.303 2e-20
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.813 0.867 0.294 4e-20
Q39196287 Probable aquaporin PIP1-4 no no 0.813 0.867 0.292 4e-20
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.843 0.895 0.297 7e-20
Q08733286 Aquaporin PIP1-3 OS=Arabi yes no 0.810 0.867 0.310 7e-20
>sp|Q7XLR1|PIP26_ORYSJ Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2 Back     alignment and function desciption
 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 26/255 (10%)

Query: 52  DIFSVKVW---RASMAELLGTAVLVF-ALDTIVISSIQTDTKTPNLVMSTLVAI----II 103
           D+  +++W   RA +AE + T + ++  + T++   +Q+       V +  +A     +I
Sbjct: 27  DVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMI 86

Query: 104 TILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKI 163
            IL+  T  ISGGHINP V+F   L    S  RA +YI+AQC+GGI G      +V   +
Sbjct: 87  FILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGV----GIVKGIM 142

Query: 164 AHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALG 223
            H ++  G   N+V          G  T  AL  EII +FV ++ +V+ A D ++     
Sbjct: 143 KHQYNANGGGANMVAS--------GYSTGTALGAEIIGTFVLVY-TVFSATDPKRNARDS 193

Query: 224 RVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRG-GHLWDRHWVFWAG 282
            V V   +   +G  VF+    T      G G+NPAR +G A++      WD HW+FWAG
Sbjct: 194 HVPVLAPL--PIGFAVFMVHLATIP--ITGTGINPARSIGAAVIYNQKKAWDDHWIFWAG 249

Query: 283 PAIACVAFALYTKLI 297
           P I  +A A Y + I
Sbjct: 250 PFIGALAAAAYHQYI 264
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|P61838|PIP11_VICFA Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1 Back     alignment and function description
>sp|P61837|PIP11_ARATH Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|Q08733|PIP13_ARATH Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
292653565302 aquaporin XIP1;1 [Gossypium hirsutum] 0.944 0.956 0.708 1e-120
224080564309 aquaporin, MIP family, PIP subfamily [Po 0.967 0.957 0.72 1e-119
224103261306 aquaporin, MIP family, PIP subfamily [Po 1.0 1.0 0.696 1e-118
309385617326 X intrinsic protein [Nicotiana sylvestri 0.990 0.929 0.650 1e-114
309385615325 X intrinsic protein [Nicotiana sylvestri 0.983 0.926 0.657 1e-113
359475063318 PREDICTED: aquaporin PIP1-3-like [Vitis 0.977 0.940 0.656 1e-112
309385597326 X intrinsic protein [Nicotiana tabacum] 0.990 0.929 0.633 1e-112
224103255306 aquaporin, MIP family, PIP subfamily [Po 0.977 0.977 0.653 1e-111
309385605326 X intrinsic protein [Solanum tuberosum] 0.986 0.926 0.630 1e-111
309385603325 X intrinsic protein [Solanum tuberosum] 0.986 0.929 0.626 1e-111
>gi|292653565|gb|ADE34299.1| aquaporin XIP1;1 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/295 (70%), Positives = 250/295 (84%), Gaps = 6/295 (2%)

Query: 10  DIEGEYGGNRVQPF-ATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLG 68
           D E  Y G RV+PF ATP+ E     +EKKQ+P+T  KIL  E++FS++VWRAS+AELLG
Sbjct: 12  DEENAYTGTRVRPFVATPRVE-----DEKKQSPTTLNKILCLEELFSLEVWRASLAELLG 66

Query: 69  TAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAAL 128
           TAVLVFA+DTIVISS +T TKTP+L+MS L+A+ IT+LL+ATFPISGGHINP++S AA+L
Sbjct: 67  TAVLVFAMDTIVISSYETQTKTPHLIMSFLIAVTITVLLLATFPISGGHINPVISLAASL 126

Query: 129 TGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIG 188
           TG+ S +RAAIYILAQCVGG+ GALAL++VV  KI   FSLGGCTL +VVP  +GP+ IG
Sbjct: 127 TGVISLSRAAIYILAQCVGGVLGALALQSVVNTKIEQTFSLGGCTLTIVVPSANGPLVIG 186

Query: 189 LGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQ 248
           L T QALWLEIIC+FVFLFAS+W+AFD RQAK LGRV VC +IG V+GL+VF+STTVT+ 
Sbjct: 187 LETSQALWLEIICTFVFLFASIWIAFDKRQAKHLGRVVVCSIIGVVVGLIVFISTTVTST 246

Query: 249 KGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPSQNLH 303
           KGYAG G+NPARCLGPAL+RGGHLW+ HWVFWAGP +ACVAFALYTKLIPSQ LH
Sbjct: 247 KGYAGVGMNPARCLGPALIRGGHLWNGHWVFWAGPVVACVAFALYTKLIPSQLLH 301

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224080564|ref|XP_002306164.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849128|gb|EEE86675.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103261|ref|XP_002312987.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849395|gb|EEE86942.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|309385617|gb|ADO66676.1| X intrinsic protein [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|309385615|gb|ADO66675.1| X intrinsic protein [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|359475063|ref|XP_002276605.2| PREDICTED: aquaporin PIP1-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|309385597|gb|ADO66666.1| X intrinsic protein [Nicotiana tabacum] gi|309385613|gb|ADO66674.1| X intrinsic protein [Nicotiana tomentosiformis] Back     alignment and taxonomy information
>gi|224103255|ref|XP_002312985.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849393|gb|EEE86940.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|309385605|gb|ADO66670.1| X intrinsic protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|309385603|gb|ADO66669.1| X intrinsic protein [Solanum tuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query306
DICTYBASE|DDB_G0290691526 DDB_G0290691 [Dictyostelium di 0.558 0.325 0.298 2.6e-24
DICTYBASE|DDB_G0274209411 DDB_G0274209 [Dictyostelium di 0.558 0.416 0.320 1.1e-20
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.748 0.817 0.300 4e-19
TAIR|locus:2197279268 TIP3;1 [Arabidopsis thaliana ( 0.336 0.384 0.330 4.1e-18
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.790 0.846 0.291 9.5e-18
FB|FBgn0034884274 CG17662 [Drosophila melanogast 0.683 0.762 0.290 1.2e-17
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.803 0.860 0.280 5.3e-17
DICTYBASE|DDB_G0279443294 aqpB "aquaporin B" [Dictyostel 0.732 0.761 0.287 1.1e-16
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.813 0.867 0.271 2.2e-16
UNIPROTKB|Q0C502226 aqpZ "Aquaporin Z" [Hyphomonas 0.715 0.969 0.294 2.3e-16
DICTYBASE|DDB_G0290691 DDB_G0290691 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 226 (84.6 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
 Identities = 58/194 (29%), Positives = 91/194 (46%)

Query:   112 PISGGHINPLVSFAAALTGITSF-------TRAAIYILAQCVGGIFGALALEAVVTKKIA 164
             P+SGGH+NP ++ A   +G TS         R   YI+ Q  GGI G+  +  ++  ++ 
Sbjct:   325 PVSGGHLNPSITIATFFSGYTSLGCNKKKVIRCLFYIIFQITGGIIGSAIIRGIIPFEVM 384

Query:   165 HNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGR 224
                +LG CT         G +  G G   AL +E + S + L+ +   A D RQ   +G 
Sbjct:   385 KRTNLGMCTYG-------GDISSG-G---ALGMEFMFSMLNLYIAFGTALDRRQTPIIGG 433

Query:   225 VTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPA 284
                   I   LG  +  S+ ++    +   G N ARCL PA+V G  ++++ W +  GP 
Sbjct:   434 AVGAFFISITLGFSIIASSGISPNYIF---GFNMARCLCPAIVTG--IFNKIWPYMVGPI 488

Query:   285 IACVAFALYTKLIP 298
             IAC+    Y   +P
Sbjct:   489 IACITIGTYIHFVP 502
GO:0016020 "membrane" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0005215 "transporter activity" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
DICTYBASE|DDB_G0274209 DDB_G0274209 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0034884 CG17662 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279443 aqpB "aquaporin B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C502 aqpZ "Aquaporin Z" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P61837PIP11_ARATHNo assigned EC number0.33330.80060.8566yesno
Q06611PIP12_ARATHNo assigned EC number0.31110.81370.8706yesno
Q08733PIP13_ARATHNo assigned EC number0.31010.81040.8671yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-32
pfam00230218 pfam00230, MIP, Major intrinsic protein 8e-32
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 3e-28
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-21
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 6e-20
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 4e-17
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 6e-16
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 8e-16
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-15
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 4e-15
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-14
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-12
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-09
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-05
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-05
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 0.001
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information 
 Score =  120 bits (302), Expect = 1e-32
 Identities = 70/240 (29%), Positives = 101/240 (42%), Gaps = 14/240 (5%)

Query: 60  RASMAELLGTAVLVFALDTIVISSIQTDTKTPNLV-MSTLVAIIITILLIATFPISGGHI 118
           R  +AE LGT +LVF     V++       +  L+ ++      I +L+ A   ISGGHI
Sbjct: 1   RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHI 60

Query: 119 NPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVV 178
           NP V+ A A+ G     R   YI+AQ +G I GA  L  +                N+V 
Sbjct: 61  NPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGAN----NIVA 116

Query: 179 PGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLL 238
                    G+    A ++E I +F+ +   V  A               + IG ++  +
Sbjct: 117 GIFGTYPSPGVSNGNAFFVEFIGTFILVL--VVFATTDDPNGPPPGGLAPLAIGLLVAAI 174

Query: 239 VFVSTTVTAQKGYAGAGLNPARCLGPALVRGG-HLWDRHWVFWAGPAIACVAFALYTKLI 297
                 +T      GA +NPAR LGPAL  G    W   WV+W GP I  +A AL    +
Sbjct: 175 GLAGGPIT------GASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms. Length = 228
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 306
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.59
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.55
PLN00026298 aquaporin NIP; Provisional 99.54
PLN00183274 putative aquaporin NIP7; Provisional 99.52
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.49
PLN00184 296 aquaporin NIP1; Provisional 99.43
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.42
PLN00166 250 aquaporin TIP2; Provisional 99.41
PLN00167 256 aquaporin TIP5; Provisional 99.35
PLN00027 252 aquaporin TIP; Provisional 99.33
PTZ00016 294 aquaglyceroporin; Provisional 99.25
PRK05420231 aquaporin Z; Provisional 99.2
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.02
COG0580 241 GlpF Glycerol uptake facilitator and related perme 98.94
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 98.8
COG2116265 FocA Formate/nitrite family of transporters [Inorg 93.27
PRK11562268 nitrite transporter NirC; Provisional 81.93
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-50  Score=358.45  Aligned_cols=225  Identities=35%  Similarity=0.562  Sum_probs=187.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccc
Q 040654           52 DIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGI  131 (306)
Q Consensus        52 ~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~  131 (306)
                      +..+.+.+|++++||++|++++|+++++.............+.+++.+|+.+++.+++++++||||+|||||+++++.|+
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~   83 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK   83 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC
Confidence            34567899999999999999999988876555433333456789999999999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 040654          132 TSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVW  211 (306)
Q Consensus       132 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~  211 (306)
                      +++.+++.|+++|++|+++|+++.+.+.+.+....   +.   ..  +.+.    .+.+..|+++.|++.||+|+++++.
T Consensus        84 isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~---~~---~~--~~~~----~~~~~~q~~~~E~ilTf~Lv~~v~~  151 (238)
T KOG0223|consen   84 ISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRK---GL---GL--TGLA----PGLSTGQGLVIEIILTFILVFTVFA  151 (238)
T ss_pred             CcHHHhHHHHHHHHHHHHHHHHHHheecCcccccC---Cc---ce--eccC----CCCCcchhHHHHHHHHHHHhheeEE
Confidence            99999999999999999999999999988752211   11   11  1222    2678999999999999999999887


Q ss_pred             HhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHH
Q 040654          212 MAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFA  291 (306)
Q Consensus       212 ~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~  291 (306)
                      .++|+|+.     ..+|+.||+.+.+.++    .++  ++||++|||||+|||+++.+  .|++|||||+||++|+++++
T Consensus       152 ~a~d~~~~-----~~a~l~IG~~v~~~~l----~~g--~~TG~sMNPArSfGpAvv~~--~w~~hwiYwvgP~~Ga~~a~  218 (238)
T KOG0223|consen  152 TATDPRRS-----ELAPLAIGFSVGLNIL----AAG--PFTGASMNPARSFGPAVVYG--SWDDHWIYWVGPLLGAILAA  218 (238)
T ss_pred             EeecCCCc-----ccHHHHHHHHHHHHHH----eec--CcCcCccCcHHHhhHHHHhc--CCCcEEEEEhhHHHHHHHHH
Confidence            68998886     3456666666665444    334  99999999999999999987  59999999999999999999


Q ss_pred             HHHHHcccCc
Q 040654          292 LYTKLIPSQN  301 (306)
Q Consensus       292 l~~~~~~~~~  301 (306)
                      ++||++....
T Consensus       219 ~~y~~v~~~~  228 (238)
T KOG0223|consen  219 LIYRLVFIPD  228 (238)
T ss_pred             HHHHHhccCc
Confidence            9999886554

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-21
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 1e-20
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 3e-20
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-18
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-16
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-16
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-16
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-16
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 8e-16
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 2e-15
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-15
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 3e-15
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 5e-15
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 6e-15
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-14
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-13
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 2e-09
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 4e-08
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-05
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 5e-05
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 5e-05
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 5e-05
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 8e-05
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 8e-05
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 1e-04
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 1e-04
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-04
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 31/272 (11%)
Query: 27  KQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQT 86
           +Q  R + ++  ++PS+   ++ F+ +++   W+A  AE L  A+L+F L ++  +    
Sbjct: 20  QQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFL--AMLIFVLLSVGSTINWG 77
Query: 87  DTKTP---NLVMSTLVXXXXXXXXXXXF-PISGGHINPLVSFAAALTGITSFTRAAIYIL 142
            ++ P   ++V+ +L            F  ISGGHINP V+ A   T   S  ++  YI 
Sbjct: 78  GSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIT 137
Query: 143 AQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICS 202
           AQC+G I GA  L  V    +     +GG  +  V     G +  G G    L +E+I +
Sbjct: 138 AQCLGAIIGAGILYLVTPPSV-----VGGLGVTTV----HGNLTAGHG----LLVELIIT 184
Query: 203 FVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCL 262
           F  +F +++ + D ++    G V + I     +G L  ++        Y GA +NPAR  
Sbjct: 185 FQLVF-TIFASCDDKRTDVTGSVALAIGFSVAIGHLFAIN--------YTGASMNPARSF 235
Query: 263 GPALVRGGHLWDRHWVFWAGPAI-ACVAFALY 293
           GPA++ G   W+ HW++W GP I A +A ALY
Sbjct: 236 GPAVIMGN--WENHWIYWVGPIIGAVLAGALY 265
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query306
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-47
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-45
2o9g_A234 Aquaporin Z; integral membrane protein, structural 4e-45
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 6e-45
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-43
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 4e-43
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 5e-43
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-06
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-43
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 6e-43
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-41
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-05
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 3e-33
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-07
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-28
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 4e-27
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  161 bits (408), Expect = 2e-47
 Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 27/286 (9%)

Query: 14  EYGGNRVQPFATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLV 73
            +  + +      +Q  R + ++  ++PS+   ++ F+ +++   W+A  AE L   + V
Sbjct: 7   HHHHHGMASMTGGQQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFV 66

Query: 74  FA-LDTIVISSIQTDTKTPNLVMSTLV-AIIITILLIATFPISGGHINPLVSFAAALTGI 131
              + + +      +    ++V+ +L   + I  ++     ISGGHINP V+ A   T  
Sbjct: 67  LLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRK 126

Query: 132 TSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGT 191
            S  ++  YI AQC+G I GA  L  V    +            V            L  
Sbjct: 127 ISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLG-------VTTVHG------NLTA 173

Query: 192 RQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGY 251
              L +E+I +F  +F  ++ + D ++    G  +V + IG  + +    +   T     
Sbjct: 174 GHGLLVELIITFQLVFT-IFASCDDKRTDVTG--SVALAIGFSVAIGHLFAINYT----- 225

Query: 252 AGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYTKL 296
            GA +NPAR  GPA++ G   W+ HW++W GP I A +A ALY  +
Sbjct: 226 -GASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAVLAGALYEYV 268
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.55
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.28
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.27
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.27
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.26
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.25
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.24
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.21
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.19
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.19
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.18
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.15
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.11
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 80.56
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=5.9e-52  Score=383.35  Aligned_cols=227  Identities=28%  Similarity=0.504  Sum_probs=182.8

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHhhheeEEeccc--CCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHH
Q 040654           49 GFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQ--TDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAA  126 (306)
Q Consensus        49 ~~~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~--~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~  126 (306)
                      ..++.+++++||++++||+|||+|+|++++++++...  +....+++.++++||+++++++|+++++||||+|||||+++
T Consensus        42 ~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal  121 (340)
T 3iyz_A           42 AFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM  121 (340)
T ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHH
Confidence            3456667899999999999999999988877654321  12234678899999999999999999999999999999999


Q ss_pred             HHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHH
Q 040654          127 ALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFL  206 (306)
Q Consensus       127 ~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~  206 (306)
                      ++.|+++|.+++.||++|++||++|+++++.++++....       .+.++.+.|      +.+..++|+.|+++||+|+
T Consensus       122 ~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-------~lg~~~~~~------~~s~~~~f~~E~i~Tf~Lv  188 (340)
T 3iyz_A          122 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-------GLGVTTVHG------NLTAGHGLLVELIITFQLV  188 (340)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-------ceeeccCCC------ccCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998765321       122222222      4688999999999999999


Q ss_pred             HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHH
Q 040654          207 FASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIA  286 (306)
Q Consensus       207 ~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iG  286 (306)
                      ++++.+ .|+++....  ...|+.||+.++    +...++.  ++||++||||||||||++.+  .|+++||||+||++|
T Consensus       189 ~~Ila~-~d~~~~~~~--~~~pl~IGl~v~----i~~~~g~--~~TG~amNPARdlGPal~~~--~w~~~WVywvgPiiG  257 (340)
T 3iyz_A          189 FTIFAS-CDDKRTDVT--GSVALAIGFSVA----IGHLFAI--NYTGASMNPARSFGPAVIMG--NWENHWIYWVGPIIG  257 (340)
T ss_pred             HHHHHh-hcCccCCcc--cchhhHHHHHHH----HHHHhcc--CCccccccHHHHHHHHHHcc--CCCcEeehhHHHHHH
Confidence            998754 555543221  234566666554    3344443  78999999999999999976  799999999999999


Q ss_pred             HHHHHHHHHHccc
Q 040654          287 CVAFALYTKLIPS  299 (306)
Q Consensus       287 a~~a~l~~~~~~~  299 (306)
                      +++++++|+++..
T Consensus       258 ailaallY~~l~~  270 (340)
T 3iyz_A          258 AVLAGALYEYVFC  270 (340)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998753
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 306
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-25
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-25
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 4e-25
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-24
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 0.001
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.8 bits (248), Expect = 2e-25
 Identities = 70/259 (27%), Positives = 108/259 (41%), Gaps = 32/259 (12%)

Query: 51  EDIFSVKVWRASMAELLGTAVLVFALDTIVI-------SSIQTDTKTPNLVMSTLVAIII 103
            +      WRA +AE L   + +F      +       S+  T     N+ +S    + I
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62

Query: 104 TILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKI 163
             L  +   ISG H+NP V+    L+   S  RA +YI+AQCVG I     L       I
Sbjct: 63  ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAIL-----SGI 117

Query: 164 AHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALG 223
             +       LN + P        G+ + Q L +EII +   +   V    D R+    G
Sbjct: 118 TSSLPDNSLGLNALAP--------GVNSGQGLGIEIIGTLQLVLC-VLATTDRRRRDLGG 168

Query: 224 RVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGP 283
              + I     LG L+ +  T        G G+NPAR  G +++   H +  HW+FW GP
Sbjct: 169 SGPLAIGFSVALGHLLAIDYT--------GCGINPARSFGSSVI--THNFQDHWIFWVGP 218

Query: 284 AI-ACVAFALYTKLIPSQN 301
            I A +A  +Y  ++  ++
Sbjct: 219 FIGAALAVLIYDFILAPRS 237
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query306
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.26
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.14
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.13
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.03
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-50  Score=360.24  Aligned_cols=232  Identities=19%  Similarity=0.229  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccch
Q 040654           58 VWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRA  137 (306)
Q Consensus        58 ~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~  137 (306)
                      +.|++++||+||++|+|+++++.......+...+.+.+++++|+++++.+++++++||||+|||||+++++.|+++|.++
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~   81 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKV   81 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGGH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcHHHh
Confidence            46899999999999999887766555555555677899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHhhhhhhhccC-----Ccc----eeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 040654          138 AIYILAQCVGGIFGALALEAVVTKKIAHNFSL-----GGC----TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFA  208 (306)
Q Consensus       138 ~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~-----g~~----~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~  208 (306)
                      +.|+++|++|+++|+++++.++++.+.+....     +..    ..+.+++.|+.    +.+..++|+.|+++|++|+++
T Consensus        82 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~----~~s~~~~~~~E~v~Tf~lv~~  157 (254)
T d1fx8a_          82 IPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNP----HINFVQAFAVEMVITAILMGL  157 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCc----cccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998876543210     000    12334556665    689999999999999999998


Q ss_pred             HHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHh-----------CCCCCCcce
Q 040654          209 SVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVR-----------GGHLWDRHW  277 (306)
Q Consensus       209 i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~-----------g~~~~~~~w  277 (306)
                      ++... |++++.. .....|+.+|+.+...+....      ++||++||||||||||++.           ++++|+|+|
T Consensus       158 il~~~-~~~~~~~-~~~~~~l~iG~~v~~~~~~~g------~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~w  229 (254)
T d1fx8a_         158 ILALT-DDGNGVP-RGPLAPLLIGLLIAVIGASMG------PLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFL  229 (254)
T ss_dssp             HHHHH-CTTSSSC-CGGGHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTH
T ss_pred             HHHHh-cCccCCC-cccccchHHHHHHHHHHhhcc------cccccccChHHHHHHHHHHhhcccccccccCCCCCCeee
Confidence            87654 4443322 233556777777765554433      6789999999999999985           346899999


Q ss_pred             ehhhhHHHHHHHHHHHHHHcccCc
Q 040654          278 VFWAGPAIACVAFALYTKLIPSQN  301 (306)
Q Consensus       278 vywv~P~iGa~~a~l~~~~~~~~~  301 (306)
                      |||++|++|+++++++||++..+|
T Consensus       230 vy~vgP~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         230 VPLFGPIVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTGGG
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999887665
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure