Citrus Sinensis ID: 040699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
Protein Sequence
MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFCH
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccHHHcccccccEEEccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccEEEcccccccccccccEEEccccEEEEEcccccccccccccEEEccccEEEEEcccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccEEcccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHcccccccEEEccccEEcccccccccccccccEEEcccccccEEccccccccccccHHHHHccccccccccccccccccccHHccccccccEEccccccccccccccccccccccEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHHccccccEEEEccccccccccccccHHcccccccEEEEccccccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHcccccccccEEEEEccccccccccHHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHHccccccEEEccccccccccccHHcccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mgsfpslnTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFpslknlsmsgcevnglvrgqgfphfkslehldmsstRIALNTSFLQIIGesmpslkylslsnstrgtnssriLDQGLCSLMHLQELYMadndlrgslpwclANMTSLRILYVSYNqltgsisssplvhlTSIEKLYlsnnhfripisleplfnhsrlkifyadnnelnaeitqshsltapnfqlsrlslsssygdgfifpkflyhqhdleyadlshikmngefptwllenntKLRQLSLvndslagpfrlpihshkrlgmldisnnnfrghipleigdilpslhVFNIsmnaldgsipssfgnmnFLRILDlsnnqltgeipehlavGCVNLESLVLsnnslkghmfsrNFNLANLMSLQLEGNHFIGEISQSLskcssleglflnnnnlsgkiprwlgdltrlqyiimpnnhlegpipvefcQLDLLQildisdnnisgrldlscnkligpippkignltriqtlnlshndltgsipstfsnlkhvesldlsnnklngkiphqlVELKTLEVFSVAYNnlsgeipewEAQFATFnensyegntflcglplpicrspatmseasignerddnlidtnsffITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVvdnliptrfch
Flexible Loop (DISEMBL)
MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFCH
Low Complexity Region (SEG)
MGSFPSlntlyllfnnftDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCvnleslvlsnnslKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCqldllqildiSDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFCH
Disordered region (IsUnstruct)
******LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSL**********RILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSP************DDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFC*
Disordered Region (DISOPRED)
MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCG***************************TNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFC*
Disordered Region (DISEMBL)
MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFCH
Disordered Region (DISPRO)
*GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFCH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	689	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.696	0.409	0.338	3e-52
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.817	0.492	0.311	6e-50
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.811	0.507	0.302	9e-50
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.674	0.371	0.307	8e-49
P93194	1109	Receptor-like protein kin	N/A	no	0.738	0.458	0.310	1e-48
Q42371	976	LRR receptor-like serine/	no	no	0.677	0.478	0.316	2e-48
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.746	0.411	0.305	4e-47
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.850	0.584	0.295	5e-47
Q9LRT1	1016	Probably inactive leucine	no	no	0.799	0.542	0.300	7e-47
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.767	0.514	0.294	1e-46

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  207 bits (526), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 259/547 (47%), Gaps = 67/547 (12%)

Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
           G CS +   ELY  DN L G +P  L N+  L+ L +  N+LT SI SS L  LT +  L
Sbjct: 261 GNCSSLVQLELY--DNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSS-LFRLTQLTHL 317

Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQS----HSLTAPNFQLSRLS--L 244
            LS NH   PIS E  F  S L++    +N    E  QS     +LT      + +S  L
Sbjct: 318 GLSENHLVGPISEEIGFLES-LEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGEL 376

Query: 245 SSSYG-----------DGFI---FPKFLYHQHDLEYADLSHIKMNGEFPTWL-------- 282
            +  G           D  +    P  + +   L+  DLSH +M GE P           
Sbjct: 377 PADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFI 436

Query: 283 --------------LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIP 328
                         + N + L  LS+ +++L G  +  I   ++L +L +S N+  G IP
Sbjct: 437 SIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIP 496

Query: 329 LEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE 388
            EIG+ L  L++  +  N   G IP    N+  L+ L + +N L G IPE +      L 
Sbjct: 497 REIGN-LKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEM-FDMKLLS 554

Query: 389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGK 448
            L LSNN   G + +    L +L  L L+GN F G I  SL   S L    +++N L+G 
Sbjct: 555 VLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGT 614

Query: 449 IP-RWLGDLTRLQ-YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR---------- 496
           IP   L  L  +Q Y+   NN L G IP E  +L+++Q +D+S+N  SG           
Sbjct: 615 IPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKN 674

Query: 497 ---LDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
              LD S N L G IP ++   +  I +LNLS N  +G IP +F N+ H+ SLDLS+N L
Sbjct: 675 VFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNL 734

Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSP 612
            G+IP  L  L TL+   +A NNL G +PE    F   N +   GNT LCG   P+   P
Sbjct: 735 TGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL--KP 791

Query: 613 ATMSEAS 619
            T+ + S
Sbjct: 792 CTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  199 bits (506), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 191/614 (31%), Positives = 276/614 (44%), Gaps = 51/614 (8%)

Query: 81  KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQE 140
           K L+ LD+S   I    S L I   S  S+ YL  S    G + S  +   L +  +L+ 
Sbjct: 177 KKLQTLDLSYNNITGPISGLTIPLSSCVSMTYLDFS----GNSISGYISDSLINCTNLKS 232

Query: 141 LYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIP 200
           L ++ N+  G +P     +  L+ L +S+N+LTG I         S++ L LS N+F   
Sbjct: 233 LNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGV 292

Query: 201 ISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYH 260
           I  E L + S L+     NN ++     +   +  + Q+  LS +   GD   FP  +  
Sbjct: 293 IP-ESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGD---FPTSISA 348

Query: 261 QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISN 320
              L  AD S  + +G  P  L      L +L L ++ + G     I     L  +D+S 
Sbjct: 349 CKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSL 408

Query: 321 NNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHL 380
           N   G IP EIG+ L  L  F    N + G IP   G +  L+ L L+NNQLTGEIP   
Sbjct: 409 NYLNGTIPPEIGN-LQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEF 467

Query: 381 AVGCVNLESLVLSNNSLKGHMFSRNFN-LANLMSLQLEGNHFIGEISQSLSKCSSLEGLF 439
              C N+E +  ++N L G +  ++F  L+ L  LQL  N+F GEI   L KC++L  L 
Sbjct: 468 -FNCSNIEWVSFTSNRLTGEV-PKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLD 525

Query: 440 LNNNNLSGKIPRWLGDL------------TRLQYIIMPNNHLEGPIP-VEFCQLD---LL 483
           LN N+L+G+IP  LG                + ++    N  +G    VEF  +    LL
Sbjct: 526 LNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLL 585

Query: 484 QILDISDNNISGR-----------------LDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526
           QI  +   + +                   LDLS N+L G IP +IG +  +Q L LSHN
Sbjct: 586 QIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHN 645

Query: 527 DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQ 586
            L+G IP T   LK++   D S+N+L G+IP     L  L    ++ N L+G IP+   Q
Sbjct: 646 QLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQ 704

Query: 587 FATFNENSYEGNTFLCGLPLPICRS-----PATMSEASIGNERDDNLIDTNSFFITFTTS 641
            +T     Y  N  LCG+PLP C++     PA   E              NS  +    S
Sbjct: 705 LSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGVLIS 764

Query: 642 YVIVIFGIVIVLYV 655
              V   IV  + V
Sbjct: 765 AASVCILIVWAIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  199 bits (505), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 188/622 (30%), Positives = 292/622 (46%), Gaps = 63/622 (10%)

Query: 102 IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTS 161
           +I  SM  L+ L +  + R    S ++   +     L+ L +A+N L GSLP  L  + +
Sbjct: 178 VIPPSMAKLRQLRIIRAGR-NGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQN 236

Query: 162 LRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNE 221
           L  L +  N+L+G I  S + +++ +E L L  N+F   I  E +   +++K  Y   N+
Sbjct: 237 LTDLILWQNRLSGEIPPS-VGNISRLEVLALHENYFTGSIPRE-IGKLTKMKRLYLYTNQ 294

Query: 222 LNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW 281
           L  EI +           + +  S +   GFI PK   H  +L+   L    + G  P  
Sbjct: 295 LTGEIPRE---IGNLIDAAEIDFSENQLTGFI-PKEFGHILNLKLLHLFENILLGPIPRE 350

Query: 282 LLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341
           L E  T L +L L  + L G     +     L  L + +N   G IP  IG    +  V 
Sbjct: 351 LGEL-TLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIG-FYSNFSVL 408

Query: 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHM 401
           ++S N+L G IP+ F     L +L L +N+L+G IP  L   C +L  L+L +N L G +
Sbjct: 409 DMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKT-CKSLTKLMLGDNQLTGSL 467

Query: 402 FSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQY 461
               FNL NL +L+L  N   G IS  L K  +LE L L NNN +G+IP  +G+LT++  
Sbjct: 468 PIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVG 527

Query: 462 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR-------------LDLSCNKLIGPI 508
             + +N L G IP E      +Q LD+S N  SG              L LS N+L G I
Sbjct: 528 FNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEI 587

Query: 509 PPKIGNLTRIQ-------------------------TLNLSHNDLTGSIPSTFSNLKHVE 543
           P   G+LTR+                          +LN+SHN+L+G+IP +  NL+ +E
Sbjct: 588 PHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLE 647

Query: 544 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCG 603
            L L++NKL+G+IP  +  L +L + +++ NNL G +P+  A F   + +++ GN  LC 
Sbjct: 648 ILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCN 706

Query: 604 LPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYW--RR 661
                C+     S++ +      N +   S      T   IVI  + ++ ++   W  +R
Sbjct: 707 SQRSHCQPLVPHSDSKL------NWLINGSQRQKILTITCIVIGSVFLITFLGLCWTIKR 760

Query: 662 RWFYFVEMW------ITSCYYF 677
           R   FV +       +   YYF
Sbjct: 761 REPAFVALEDQTKPDVMDSYYF 782

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  195 bits (496), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 157/511 (30%), Positives = 237/511 (46%), Gaps = 46/511 (9%)

Query: 135 LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN 194
           L+ LQ L + DN+L G +P  + N TSL +   ++N+L GS+ +  L  L +++ L L +
Sbjct: 191 LVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGD 249

Query: 195 NHF--RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGF 252
           N F   IP  L  L +   L +     N+L   I +  +  A    L  L LSS+   G 
Sbjct: 250 NSFSGEIPSQLGDLVSIQYLNLI---GNQLQGLIPKRLTELA---NLQTLDLSSNNLTGV 303

Query: 253 IFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKR 312
           I  +F +  + LE+  L+  +++G  P  +  NNT L+QL L    L+G     I + + 
Sbjct: 304 IHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS 362

Query: 313 LGMLDISNNNFRGHIP------LEIGDI-----------------LPSLHVFNISMNALD 349
           L +LD+SNN   G IP      +E+ ++                 L +L  F +  N L+
Sbjct: 363 LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLE 422

Query: 350 GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLA 409
           G +P   G +  L I+ L  N+ +GE+P  +   C  L+ +    N L G + S    L 
Sbjct: 423 GKVPKEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEIDWYGNRLSGEIPSSIGRLK 481

Query: 410 NLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHL 469
           +L  L L  N  +G I  SL  C  +  + L +N LSG IP   G LT L+  ++ NN L
Sbjct: 482 DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query: 470 EGPIPVEFCQLDLLQILDISDNNISGRL------------DLSCNKLIGPIPPKIGNLTR 517
           +G +P     L  L  ++ S N  +G +            D++ N   G IP ++G  T 
Sbjct: 542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           +  L L  N  TG IP TF  +  +  LD+S N L+G IP +L   K L    +  N LS
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 578 GEIPEWEAQFATFNENSYEGNTFLCGLPLPI 608
           G IP W  +     E     N F+  LP  I
Sbjct: 662 GVIPTWLGKLPLLGELKLSSNKFVGSLPTEI 692

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  195 bits (495), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 177/570 (31%), Positives = 272/570 (47%), Gaps = 61/570 (10%)

Query: 58  LKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS- 116
           LK + +SG    G +  Q   +   LEH+D+SS     N      +G ++ +L+ LSL  
Sbjct: 94  LKKVVLSGNGFFGSIPSQ-LGNCSLLEHIDLSSNSFTGNIP--DTLG-ALQNLRNLSLFF 149

Query: 117 NSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSI 176
           NS  G        + L S+ HL+ +Y   N L GS+P  + NM+ L  L++  NQ +G +
Sbjct: 150 NSLIGP-----FPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPV 204

Query: 177 SSSPLVHLTSIEKLYLSNNHF--RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 234
            SS L ++T++++LYL++N+    +P++L  L N   L +    NN L   I        
Sbjct: 205 PSS-LGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDV---RNNSLVGAI-------- 252

Query: 235 PNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294
                               P        ++   LS+ +  G  P  L  N T LR+   
Sbjct: 253 --------------------PLDFVSCKQIDTISLSNNQFTGGLPPGL-GNCTSLREFGA 291

Query: 295 VNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS 354
            + +L+GP         +L  L ++ N+F G IP E+G    S+    +  N L+G IP 
Sbjct: 292 FSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKC-KSMIDLQLQQNQLEGEIPG 350

Query: 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCV-NLESLVLSNNSLKGHMFSRNFNLANLMS 413
             G ++ L+ L L  N L+GE+P  L++  + +L+SL L  N+L G +      L  L+S
Sbjct: 351 ELGMLSQLQYLHLYTNNLSGEVP--LSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVS 408

Query: 414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPI 473
           L L  NHF G I Q L   SSLE L L  N  +G IP  L    +L+ +++  N+LEG +
Sbjct: 409 LALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSV 468

Query: 474 PVEFCQLDLLQILDISDNNISGRL------------DLSCNKLIGPIPPKIGNLTRIQTL 521
           P +      L+ L + +NN+ G L            DLS N   GPIPP +GNL  +  +
Sbjct: 469 PSDLGGCSTLERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAI 528

Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
            LS N L+GSIP    +L  +E L+LS+N L G +P +L     L     ++N L+G IP
Sbjct: 529 YLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIP 588

Query: 582 EWEAQFATFNENSYEGNTFLCGLPLPICRS 611
                     + S   N+F  G+P  + +S
Sbjct: 589 STLGSLTELTKLSLGENSFSGGIPTSLFQS 618

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  194 bits (492), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 169/534 (31%), Positives = 253/534 (47%), Gaps = 67/534 (12%)

Query: 93  IALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL 152
           +ALN S L + GE  P++                        L  L  + +  N L G +
Sbjct: 71  VALNLSDLNLDGEISPAIG----------------------DLKSLLSIDLRGNRLSGQI 108

Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRL 212
           P  + + +SL+ L +S+N+L+G I  S +  L  +E+L L NN    PI    L     L
Sbjct: 109 PDEIGDCSSLQNLDLSFNELSGDIPFS-ISKLKQLEQLILKNNQLIGPIP-STLSQIPNL 166

Query: 213 KIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHI 272
           KI     N+L+ EI +   L   N  L  L L  +   G I P  L     L Y D+ + 
Sbjct: 167 KILDLAQNKLSGEIPR---LIYWNEVLQYLGLRGNNLVGNISPD-LCQLTGLWYFDVRNN 222

Query: 273 KMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIG 332
            + G  P   + N T  + L L  + L G     I    ++  L +  N   G IP  IG
Sbjct: 223 SLTGSIPE-TIGNCTAFQVLDLSYNQLTGEIPFDI-GFLQVATLSLQGNQLSGKIPSVIG 280

Query: 333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL 392
            ++ +L V ++S N L GSIP   GN+ F   L L +N+LTG IP  L      L  L L
Sbjct: 281 -LMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELG-NMSKLHYLEL 338

Query: 393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRW 452
           ++N L GH+      L +L  L +  N   G I   LS C++L  L ++ N  SG IPR 
Sbjct: 339 NDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRA 398

Query: 453 LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI 512
              L  + Y+ + +N+++GPIPVE  ++  L  LD+S+N I+G            IP  +
Sbjct: 399 FQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGI-----------IPSSL 447

Query: 513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-------- 564
           G+L  +  +NLS N +TG +P  F NL+ +  +DLSNN ++G IP +L +L+        
Sbjct: 448 GDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLE 507

Query: 565 ---------------TLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCG 603
                          +L V +V++NNL G+IP+    F+ F+ +S+ GN  LCG
Sbjct: 508 NNNLTGNVGSLANCLSLTVLNVSHNNLVGDIPK-NNNFSRFSPDSFIGNPGLCG 560

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  190 bits (482), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 187/613 (30%), Positives = 277/613 (45%), Gaps = 99/613 (16%)

Query: 77  FPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSL-SNSTRGTNSSRILDQGLCSL 135
           F  F +L HLD+SS  +      +     ++ SL+ L L SN   G   S+     L SL
Sbjct: 91  FGRFDNLIHLDLSSNNLV---GPIPTALSNLTSLESLFLFSNQLTGEIPSQ-----LGSL 142

Query: 136 MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNN 195
           ++++ L + DN+L G +P  L N+ +L++L ++  +LTG I S  L  L  ++ L L +N
Sbjct: 143 VNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDN 201

Query: 196 HFRIPISLEPLFNHSRLKIFYADNNELN----AEITQSHSLTAPNF-------------- 237
           +   PI  E L N S L +F A  N LN    AE+ +  +L   N               
Sbjct: 202 YLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLG 260

Query: 238 ---QLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPT--W----------- 281
              QL  LSL ++   G I PK L    +L+  DLS   + GE P   W           
Sbjct: 261 EMSQLQYLSLMANQLQGLI-PKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLA 319

Query: 282 -----------LLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLE 330
                      +  NNT L QL L    L+G   + +   + L  LD+SNN+  G IP  
Sbjct: 320 NNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEA 379

Query: 331 IGDI--LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE 388
           + ++  L  L++ N   N L+G++  S  N+  L+ L L +N L G++P+ ++     LE
Sbjct: 380 LFELVELTDLYLHN---NTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISA-LRKLE 435

Query: 389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGK 448
            L L  N   G +     N  +L  + + GNHF GEI  S+ +   L  L L  N L G 
Sbjct: 436 VLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGG 495

Query: 449 IPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG------------- 495
           +P  LG+  +L  + + +N L G IP  F  L  L+ L + +N++ G             
Sbjct: 496 LPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLT 555

Query: 496 RLDLSCNKLIGPIPP-----------------------KIGNLTRIQTLNLSHNDLTGSI 532
           R++LS N+L G I P                       ++GN   +  L L  N LTG I
Sbjct: 556 RINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKI 615

Query: 533 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNE 592
           P T   ++ +  LD+S+N L G IP QLV  K L    +  N LSG IP W  + +   E
Sbjct: 616 PWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGE 675

Query: 593 NSYEGNTFLCGLP 605
                N F+  LP
Sbjct: 676 LKLSSNQFVESLP 688

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  189 bits (481), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 191/646 (29%), Positives = 299/646 (46%), Gaps = 60/646 (9%)

Query: 37  SLDFSSLHIS-LLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL 95
           SLD S L++S  L S  +  P L+NLS++  +++G +  Q   +   L HL++S+     
Sbjct: 73  SLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQ-ISNLYELRHLNLSNN--VF 129

Query: 96  NTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWC 155
           N SF   +   + +L+ L L N+    N +  L   L +L  L+ L++  N   G +P  
Sbjct: 130 NGSFPDELSSGLVNLRVLDLYNN----NLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPAT 185

Query: 156 LANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN-NHFRIPISLEPLFNHSRLKI 214
                 L  L VS N+LTG I    + +LT++ +LY+   N F   +  E + N S L  
Sbjct: 186 YGTWPVLEYLAVSGNELTGKIPPE-IGNLTTLRELYIGYYNAFENGLPPE-IGNLSELVR 243

Query: 215 FYADN----NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLS 270
           F A N     E+  EI +   L     Q++  + + +   G I          L+  DLS
Sbjct: 244 FDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGTITQELGLI--------SSLKSMDLS 295

Query: 271 HIKMNGEFPTWLLENNTKLRQLSLVN---DSLAGPFRLPIHSHKRLGMLDISNNNFRGHI 327
           +    GE PT      ++L+ L+L+N   + L G     I     L +L +  NNF G I
Sbjct: 296 NNMFTGEIPTSF----SQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSI 351

Query: 328 PLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNL 387
           P ++G+    L + ++S N L G++P +  + N L  L    N L G IP+ L   C +L
Sbjct: 352 PQKLGEN-GRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLG-KCESL 409

Query: 388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS-LEGLFLNNNNLS 446
             + +  N L G +    F L  L  ++L+ N+  GE+  S    S  L  + L+NN LS
Sbjct: 410 TRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLS 469

Query: 447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIG 506
           G +P  +G+L+ +Q +++  N   G IP E  +L  L  LD S N  SGR          
Sbjct: 470 GSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGR---------- 519

Query: 507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 566
            I P+I     +  ++LS N+L+G IP+  + +K +  L+LS N L G IP  +  +++L
Sbjct: 520 -IAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSL 578

Query: 567 EVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDD 626
                +YNNLSG +P    QF+ FN  S+ GN+ LCG  L  C      S          
Sbjct: 579 TSVDFSYNNLSGLVPS-TGQFSYFNYTSFVGNSHLCGPYLGPCGKGTHQSHVK------- 630

Query: 627 NLIDTNSFFITFTTSYVIVIFGIVIVLYVNS--------YWRRRWF 664
            L  T    +     +  ++F IV ++   S         WR   F
Sbjct: 631 PLSATTKLLLVLGLLFCSMVFAIVAIIKARSLRNASEAKAWRLTAF 676

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  189 bits (480), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 183/609 (30%), Positives = 301/609 (49%), Gaps = 58/609 (9%)

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRI 164
           + +  LK LSLSN+    N + + +       HLQ+L ++ N+L G +P  L ++TSL+ 
Sbjct: 98  QKLQRLKVLSLSNNNFTGNINALSNNN-----HLQKLDLSHNNLSGQIPSSLGSITSLQH 152

Query: 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNA 224
           L ++ N  +G++S     + +S+  L LS+NH    I    LF  S L       N  + 
Sbjct: 153 LDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIP-STLFRCSVLNSLNLSRNRFSG 211

Query: 225 EITQSHSLTAPNFQLSRL---SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW 281
               + S  +  ++L RL    LSS+   G I P  +   H+L+   L   + +G  P+ 
Sbjct: 212 ----NPSFVSGIWRLERLRALDLSSNSLSGSI-PLGILSLHNLKELQLQRNQFSGALPSD 266

Query: 282 LLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341
           +      L ++ L ++  +G     +   K L   D+SNN   G  P  IGD+   +H+ 
Sbjct: 267 I-GLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHL- 324

Query: 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHM 401
           + S N L G +PSS  N+  L+ L+LS N+L+GE+PE L   C  L  + L  N   G++
Sbjct: 325 DFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLE-SCKELMIVQLKGNDFSGNI 383

Query: 402 FSRNFNLANLMSLQLEGNHFIGEISQSLSKC-SSLEGLFLNNNNLSGKIPRWLGDLTRLQ 460
               F+L  L  +   GN   G I +  S+   SL  L L++N+L+G IP  +G    ++
Sbjct: 384 PDGFFDLG-LQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMR 442

Query: 461 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR-------------LDLSCNKLIGP 507
           Y+ +  NH    +P E   L  L +LD+ ++ + G              L L  N L G 
Sbjct: 443 YLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGS 502

Query: 508 IPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 567
           IP  IGN + ++ L+LSHN+LTG IP + SNL+ ++ L L  NKL+G+IP +L +L+ L 
Sbjct: 503 IPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLL 562

Query: 568 VFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASI------- 620
           + +V++N L G +P  +  F + ++++ +GN  +C    P+ R P T++           
Sbjct: 563 LVNVSFNRLIGRLPLGDV-FQSLDQSAIQGNLGICS---PLLRGPCTLNVPKPLVINPNS 618

Query: 621 ---GNERDDNLIDTNS------FFITFTT----SYVIVIF-GIVIVLYVNSYWRRRWFYF 666
              GN    N     S       F++ +     S  I+IF G++I+  +N+  RRR   F
Sbjct: 619 YGNGNNMPGNRASGGSGTFHRRMFLSVSVIVAISAAILIFSGVIIITLLNASVRRR-LAF 677

Query: 667 VEMWITSCY 675
           V+  + S +
Sbjct: 678 VDNALESIF 686

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  188 bits (478), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 178/605 (29%), Positives = 269/605 (44%), Gaps = 76/605 (12%)

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRI 164
           +S PSL+ L LSN+   ++    L + L +L  L+ + ++ N   G+ P+ L   T L  
Sbjct: 98  QSFPSLQALDLSNNAFESS----LPKSLSNLTSLKVIDVSVNSFFGTFPYGLGMATGLTH 153

Query: 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR--IPISLEPLFNHSRLKIFYADNNEL 222
           +  S N  +G +    L + T++E L     +F   +P S + L N   LK      N  
Sbjct: 154 VNASSNNFSGFLPED-LGNATTLEVLDFRGGYFEGSVPSSFKNLKN---LKFLGLSGNNF 209

Query: 223 NAEITQSHSLTAPNFQLSRLSLSSSYGDGFI--FPKFLYHQHDLEYADLSHIKMNGEFPT 280
             ++ +         +LS L       +GF+   P+       L+Y DL+   + G+ P+
Sbjct: 210 GGKVPKVIG------ELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPS 263

Query: 281 WLLENNTKLRQLSLV---NDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS 337
            L     +L+QL+ V    + L G     +     L  LD+S+N   G IP+E+G+ L +
Sbjct: 264 SL----GQLKQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGE-LKN 318

Query: 338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
           L + N+  N L G IPS    +  L +L+L  N L G +P HL      L+ L +S+N L
Sbjct: 319 LQLLNLMRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNS-PLKWLDVSSNKL 377

Query: 398 KGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT 457
            G + S      NL  L L  N F G+I + +  C +L  + +  N++SG IP   GDL 
Sbjct: 378 SGDIPSGLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLP 437

Query: 458 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDI-----------------------SDNNIS 494
            LQ++ +  N+L G IP +      L  +DI                       S NN +
Sbjct: 438 MLQHLELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSSIFSSPNLQTFIASHNNFA 497

Query: 495 GR-------------LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKH 541
           G+             LDLS N   G IP +I +  ++ +LNL  N L G IP   + +  
Sbjct: 498 GKIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHM 557

Query: 542 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFL 601
           +  LDLSNN L G IP  L    TLE+ +V++N L G IP     FA  +     GN  L
Sbjct: 558 LAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPS-NMLFAAIDPKDLVGNNGL 616

Query: 602 CGLPLPICRSPATMSEASIGNERDDNLIDTN-SFFITFTTSYVIVIFGIVIVLYVNSYWR 660
           CG  LP C     +S       R+   I  N + F     + VIV  G++       +  
Sbjct: 617 CGGVLPPCSKSLALSAKG----RNPGRIHVNHAVFGFIVGTSVIVAMGMM-------FLA 665

Query: 661 RRWFY 665
            RW Y
Sbjct: 666 GRWIY 670

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
224102049	577	predicted protein [Populus trichocarpa]	0.789	0.942	0.526	1e-150
224142721	926	predicted protein [Populus trichocarpa]	0.911	0.678	0.441	1e-142
224106948	658	predicted protein [Populus trichocarpa]	0.860	0.901	0.448	1e-141
224144186	973	predicted protein [Populus trichocarpa]	0.934	0.661	0.430	1e-139
224134597	947	predicted protein [Populus trichocarpa]	0.941	0.685	0.426	1e-139
224120284	929	predicted protein [Populus trichocarpa]	0.910	0.674	0.451	1e-135
224112233	976	leucine rich repeat family protein with	0.914	0.645	0.427	1e-135
224134609	676	predicted protein [Populus trichocarpa]	0.898	0.915	0.427	1e-134
224106950	863	predicted protein [Populus trichocarpa]	0.863	0.689	0.439	1e-133
224112245	876	predicted protein [Populus trichocarpa]	0.911	0.716	0.412	1e-132

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 303/576 (52%), Positives = 377/576 (65%), Gaps = 32/576 (5%)

Query: 132 LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLY 191
           LC L  LQEL ++ N++ GSLP C +N+T+L+ L +S+N  TG+IS SP+  LTSI  L 
Sbjct: 7   LCELKQLQELDISYNNITGSLPSCFSNLTNLQALDISFNHFTGNISLSPIGSLTSIRDLN 66

Query: 192 LSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDG 251
           LS+NHF+IPISL P FN S LK    D NEL       H+L  P FQL RLSL+ + G G
Sbjct: 67  LSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHNLI-PRFQLQRLSLAYT-GSG 124

Query: 252 FIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHK 311
             F K LY+QHDL++ DLSHIKM GEFP+WLL+NNTKL +L LVN+S +G F+L  HS  
Sbjct: 125 GTFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSFQLANHSLD 184

Query: 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
           RL  LDIS N+    IP EIG   P L   N+S N   GSIPSS  NM+ L ILDLSNN+
Sbjct: 185 RLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLEILDLSNNE 244

Query: 372 LTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSK 431
           L+G IPEHL   C++L  LVLSNN LKG  F RNFNLA L  L L GN   G +  SLS 
Sbjct: 245 LSGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTGILPNSLSN 304

Query: 432 CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491
            S LE L ++ NNLSGKIPRW+ +++ L+Y+ +  N+L G +P  FC   ++  + +S N
Sbjct: 305 GSRLEALDVSLNNLSGKIPRWIRNMSSLEYLDLSENNLFGSLPSSFCSSMMMTEVYLSKN 364

Query: 492 NISG-------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN 538
            + G             +LDLS N L G IP K+G L  IQ LNLSHN LTG IP TFSN
Sbjct: 365 KLEGSLIDAFDGCLSLNKLDLSHNSLTGEIPFKLGYLGNIQVLNLSHNSLTGPIPPTFSN 424

Query: 539 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGN 598
           LK +ESLD+S N LNG+IP+QLV+L +L  FSVAYNNLSG+ PE  AQFATFN +SYEGN
Sbjct: 425 LKKIESLDISYNNLNGEIPYQLVDLDSLSAFSVAYNNLSGKTPERAAQFATFNRSSYEGN 484

Query: 599 TFLCGLPL------PICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIV 652
             LCG PL       I  SP     +S G       ID  +F++TF+ +Y+I +  I  V
Sbjct: 485 PLLCGPPLTNNCTGEILPSPL----SSYG------FIDMQAFYVTFSVAYIINLLAIGAV 534

Query: 653 LYVNSYWRRRWFYFVEMWITSCYYFVVDNL-IPTRF 687
           LY+N +WRR WFYF+   I +CYYF+VDNL +P RF
Sbjct: 535 LYINPHWRRAWFYFIRESINNCYYFLVDNLHVPARF 570

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 316/715 (44%), Positives = 424/715 (59%), Gaps = 87/715 (12%)

Query: 21  ATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLV-RGQGFPH 79
           A  +       NLEYL L + +L+ S+ Q+I ++  SLK L++ GC +NG +   QGF +
Sbjct: 237 AVPSGAFLDLKNLEYLDLSYITLNNSIFQAIRTM-TSLKTLNLMGCSLNGQIPTTQGFLN 295

Query: 80  FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQ 139
            K+LE+LD+S     L+ + LQ IG +M SLK LSLS+     N      QGLC L HLQ
Sbjct: 296 LKNLEYLDLSDN--TLDNNILQTIG-TMTSLKTLSLSSCK--LNIQIPTTQGLCDLNHLQ 350

Query: 140 ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI 199
            LYM DNDL G LP CLAN+TSL+ L +SY                         NHF+I
Sbjct: 351 VLYMYDNDLSGFLPPCLANLTSLQRLDLSY-------------------------NHFKI 385

Query: 200 PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLY 259
           P+SL PL+N S+LK F   +NE+ AE    H+L +P FQL  L LSS        PKFLY
Sbjct: 386 PMSLRPLYNLSKLKSFDGSSNEIFAE-EDDHNL-SPKFQLESLYLSSIGQGARALPKFLY 443

Query: 260 HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDIS 319
           HQ +L++ DL++I++ GEFP WL+ENNT L++L L N SL+GPF LP +SH  L +L IS
Sbjct: 444 HQFNLQFLDLTNIQIQGEFPNWLIENNTYLQELHLENCSLSGPFLLPKNSHVNLSILSIS 503

Query: 320 NNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEH 379
            N+F+G IP EIG  LP L V  +S N  +GSIP S GN++ L+ LDLSNN L G+IP  
Sbjct: 504 MNHFQGQIPSEIGAHLPGLEVLFMSDNGFNGSIPFSLGNISSLQWLDLSNNILQGQIPGW 563

Query: 380 LAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLF 439
           +     +LE L LS N+  G +  R    +NL  + L  N   G I+ +    S +  L 
Sbjct: 564 IG-NMSSLEFLDLSGNNFSGRLPPRFGTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFALD 622

Query: 440 LNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL-- 497
           L++NNL+G+IP+W+  L+ L+++++  N+LEG IP++  +LD L ++D+S N++SG +  
Sbjct: 623 LSHNNLTGRIPKWIDRLSNLRFLLLSYNNLEGEIPIQLSRLDQLILIDLSHNHLSGNILS 682

Query: 498 -----------------------------------------------DLSCNKLIGPIPP 510
                                                          D SCN   G IPP
Sbjct: 683 WMISTHNFPVESTYFDFLAISHQSFEFTTKNVSLSYRGDIIWYFKGIDFSCNNFTGEIPP 742

Query: 511 KIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 570
           +IGNL+ I+ LNLSHN LTG IP TFSNLK +ESLDLS NKL+G+IP +L EL +LEVFS
Sbjct: 743 EIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPRLTELFSLEVFS 802

Query: 571 VAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDN-- 627
           VA+NNLSG  P   AQFATF EN Y+ N FLCG PLP IC +  + S         DN  
Sbjct: 803 VAHNNLSGNTPVRVAQFATFEENCYKDNPFLCGEPLPKICGAAMSPSPTPTSTNNKDNGG 862

Query: 628 LIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNL 682
            +D   F++TF  +Y++V+  I  VLY+N YWRR WF+F+E+ I +CYYF+VDNL
Sbjct: 863 FMDIEVFYVTFWVAYIMVLLVIGAVLYINPYWRRAWFHFIEVSINNCYYFLVDNL 917

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106948|ref|XP_002333588.1| predicted protein [Populus trichocarpa] gi|222837496|gb|EEE75875.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 305/680 (44%), Positives = 404/680 (59%), Gaps = 87/680 (12%)

Query: 57  SLKNLSMSGCEVNGLVRGQ--GFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
           SL+ L +  C ++G +     GF + K+LE LD+SS    L+ + LQ I  +MPSLK L 
Sbjct: 3   SLRTLILQSCRIDGQIPTTQVGFFNLKNLEFLDLSSN--TLSNNILQTI-RTMPSLKTLW 59

Query: 115 LSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTG 174
           L N +   N      QGLC L HLQELYM DNDL G LP CLANMTSL            
Sbjct: 60  LQNCS--LNGQLPTTQGLCDLNHLQELYMYDNDLIGFLPPCLANMTSL------------ 105

Query: 175 SISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 234
                        ++LYLS+NH +IP+SL PL+N S+LK FY   NE+ AE    H+LT 
Sbjct: 106 -------------QRLYLSSNHLKIPMSLSPLYNLSKLKSFYGSGNEICAE-EDDHNLT- 150

Query: 235 PNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294
           P FQL  LSLS+   +   FPKFLYHQ  L+  DL++ ++ GEFP WL+ENNT L++LSL
Sbjct: 151 PKFQLESLSLSNGGQNTRAFPKFLYHQFSLQSLDLTNFQIKGEFPNWLIENNTYLKRLSL 210

Query: 295 VNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS 354
            N SL+GPF LP  SH  L  L IS N+F+G IP EI   LP L V  +S N  +GSIPS
Sbjct: 211 ENCSLSGPFLLPKSSHVNLSFLSISMNHFQGQIPSEIRAHLPGLEVLLMSDNGFNGSIPS 270

Query: 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL 414
           S GNM+ +  LDLSNN L G+IP  +     +LE L LS N+L G +  R    + L  +
Sbjct: 271 SLGNMSLMYELDLSNNSLQGQIPGWIG-NMSSLEFLDLSRNNLSGPLPPRFNTSSKLRVV 329

Query: 415 QLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP 474
            L  N   G I+ +    S +  L L++N+L+G+IP W+G L+ L+++++  N+LEG IP
Sbjct: 330 YLSRNKLQGPIAMAFYDSSEIFALDLSHNDLTGRIPEWIGRLSNLRFLLLSYNNLEGEIP 389

Query: 475 VEFCQLDLLQILDISDNNISGRL------------------------------------- 497
           +  C+LD L ++D+S N +SG +                                     
Sbjct: 390 IRLCRLDQLTVIDLSHNYLSGNILSWMISTHPFPFQYNSHDSMFSSQQSFEFTTKNVSLP 449

Query: 498 ------------DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL 545
                       D SCN   G IPP+IGNL++I+ LNLSHN LTG IP TF NLK +ESL
Sbjct: 450 YKGSIIQYLIGIDFSCNNFTGNIPPEIGNLSKIKALNLSHNSLTGPIPPTFWNLKEIESL 509

Query: 546 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605
           DLS NKL+G+IP +L EL +LEVFSVA+NNLSG+ P   AQFATF+E+ Y+ N FLCG P
Sbjct: 510 DLSYNKLDGEIPPRLTELFSLEVFSVAHNNLSGKTPARVAQFATFDESCYKDNPFLCGEP 569

Query: 606 LP-ICRS--PATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRR 662
           LP IC +  P + +  S  NE     ++   F++TF  +Y++V+  I  VLY+N YWRR 
Sbjct: 570 LPKICAAVMPPSSTPTSTNNEDHGGFMNMEVFYVTFWVAYIMVLLVIGAVLYINPYWRRA 629

Query: 663 WFYFVEMWITSCYYFVVDNL 682
           WF+F+E+ I +CYYF+VDNL
Sbjct: 630 WFHFIEVSINNCYYFLVDNL 649

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 315/732 (43%), Positives = 421/732 (57%), Gaps = 88/732 (12%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +G+ PSL  L L   N T             NL+YL L +++L+ S+ Q+I ++  SLK 
Sbjct: 269 LGALPSLKNLSLQELNGT---VPYGGFLYLKNLKYLDLSYNTLNNSIFQAIETM-TSLKT 324

Query: 61  LSMSGCEVNGLVRG-QGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNST 119
           L + GC +NG +   QGF + K+LE+LD+S     L+ + LQ I  +M SLK L L  S 
Sbjct: 325 LKLKGCGLNGQISSTQGFLNLKNLEYLDLSDN--TLDNNILQSI-RAMTSLKTLGLQ-SC 380

Query: 120 RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
           R  N      QGLC L HLQELYM+DNDL G LP CLAN+TSL                 
Sbjct: 381 R-LNGRIPTTQGLCDLNHLQELYMSDNDLSGFLPLCLANLTSL----------------- 422

Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 239
                   ++L LS+NH +IP+SL P  N S+LK F    NE+ AE  +     +  FQL
Sbjct: 423 --------QQLSLSSNHLKIPMSLSPFHNLSKLKYFDGSGNEIFAE--EDDRNMSSKFQL 472

Query: 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
             L LSS       FP+FLYHQ  L Y DL++I++ GEFP+WL+ENNT L++L L N SL
Sbjct: 473 EYLYLSSRGQGAGAFPRFLYHQFSLRYLDLTNIQIKGEFPSWLIENNTYLQELHLENCSL 532

Query: 300 AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
           +GPF LP +SH  L  L IS N+FRG IP EIG  LP L V  +S N  +GSIP S GN+
Sbjct: 533 SGPFLLPKNSHVNLSFLSISMNHFRGQIPSEIGAHLPGLEVLFMSDNGFNGSIPFSLGNI 592

Query: 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN 419
           + L+ LDLSNN L G+IP  +     +LE L LS N+  G    R    +NL  + L  N
Sbjct: 593 SSLQWLDLSNNILQGQIPGWIG-NMSSLEFLDLSGNNFSGRFPPRFSTSSNLRYVYLSRN 651

Query: 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ 479
              G I+ +    + +  L L++NNL+G IP W+  L+ L+++++  N+LEG IP++  +
Sbjct: 652 KLQGPITMTFYDLAEIFALDLSHNNLTGTIPEWIDRLSNLRFLLLSYNNLEGEIPIQLSR 711

Query: 480 LDLLQILDISDNNISGRL------------------------------------------ 497
           LD L ++D+S N++SG +                                          
Sbjct: 712 LDRLTLIDLSHNHLSGNILYWMISTHSFPQLYNSRDSLSSSQQSFEFTTKNVSLSYRGII 771

Query: 498 -------DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550
                  D SCN   G IPP+IGNL+ I+ LNLSHN+LTG IP TF NLK +ESLDLS N
Sbjct: 772 IWYFTGIDFSCNNFTGEIPPEIGNLSMIKVLNLSHNNLTGPIPPTFWNLKEIESLDLSYN 831

Query: 551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPL-PIC 609
           KL+G+IP +L EL +LEVF VA+NNLSG+ P   AQFATF+E+ Y+ N FLCG PL  IC
Sbjct: 832 KLDGEIPPRLTELFSLEVFIVAHNNLSGKTPARVAQFATFDESCYKDNPFLCGEPLSKIC 891

Query: 610 RSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEM 669
                 S  S  NE +   +D   F++TF  +Y++V+  I  VLY+N YWRR WFYF+E+
Sbjct: 892 GVAMPPSPTSTNNEDNGGFMDMKVFYVTFWVAYIMVLLVIGAVLYINPYWRRGWFYFIEV 951

Query: 670 WITSCYYFVVDN 681
            I +CYYF+VDN
Sbjct: 952 SINNCYYFLVDN 963

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 322/755 (42%), Positives = 428/755 (56%), Gaps = 106/755 (14%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +G+FPSL TLYL  N+F        EL + ++L+ L +D  SL    LQS+ ++ PSLKN
Sbjct: 220 LGAFPSLMTLYLNKNDFRG-RILGDELQNLSSLKSLYMDGCSLDEHSLQSLGAL-PSLKN 277

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEH---------------LDMSSTRIALNTSFLQIIGE 105
           L +    ++G V  +GF   K+LE+               + M +   ALN    ++ G 
Sbjct: 278 LLLRA--LSGSVPSRGFLDLKNLEYLDLNLNTLNNSIFQAIRMMTFLKALNLHGCKLDGR 335

Query: 106 SMPSLKYLSLSNSTRGTNSSRILDQ------GLCSLMHLQELYMADNDLRGSLPWCLANM 159
              +  +L+L N      SS  LD       GLC L HLQ+LYM DNDL G LP CLAN+
Sbjct: 336 IPLAQGFLNLKNLEHLDLSSNTLDNSIFQTIGLCDLNHLQQLYMYDNDLSGFLPPCLANL 395

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
           TSL                         ++L LS NH +IP+SL PL+N S+LK F   +
Sbjct: 396 TSL-------------------------QQLDLSFNHLKIPMSLSPLYNLSKLKYFIGSD 430

Query: 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
           NE+ AE    HSL+ P FQL  +SLS+       FPKFLYHQ  L+  DL++I++ GEFP
Sbjct: 431 NEIYAE-EDDHSLS-PKFQLESISLSNRGQGAGAFPKFLYHQFSLQSFDLTNIQIKGEFP 488

Query: 280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
            WL+ENNT L  LSL N SL GPF LP +SH  L  L IS N F+G IPLEIG  LP L 
Sbjct: 489 NWLIENNTHLHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGQIPLEIGARLPGLE 548

Query: 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG 399
           V  +S N  +GSIP S GN++ L+ LDLSNN L G+IP  +     +LE L LS N+  G
Sbjct: 549 VLFMSSNGFNGSIPFSLGNISSLKGLDLSNNSLQGQIPGWIG-NMSSLEFLNLSGNNFSG 607

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL 459
            +  R F+ +NL  + L  N   G I+ +      +  L L++NNL+G IP+W+  L+ L
Sbjct: 608 RLPPR-FDTSNLRYVYLSRNKLQGPIAMTFYNSFEMFALDLSHNNLTGSIPKWIDRLSNL 666

Query: 460 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL---------------------- 497
           +++++  N+LEG IP+  C+LD L ++D+S N+ SG +                      
Sbjct: 667 RFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHFSGNILSWMISSHPFPQQYDSNDYLSS 726

Query: 498 ---------------------------DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG 530
                                      D SCN  IG IPP+IGNL+ I+ LNLSHN LTG
Sbjct: 727 SQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSLTG 786

Query: 531 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATF 590
            IP TFSNLK +ESLDLS NKL+G+IP QL+EL  LE FSVA+NNLSG+     AQFATF
Sbjct: 787 PIPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFFLEFFSVAHNNLSGKTLARVAQFATF 846

Query: 591 NENSYEGNTFLCGLP-LPICRS--PATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIF 647
            E+ Y+ N FLCG P L IC +  P +    S  NE D   ID   F++TF  +Y++V+ 
Sbjct: 847 EESCYKDNPFLCGEPLLKICGTTMPPSPMPTSTNNEDDGGFIDMEVFYVTFGVAYIMVLL 906

Query: 648 GIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNL 682
            I  +LY+N YWRR WF+F+E+ I +CYYF+VDNL
Sbjct: 907 VISAILYINPYWRRAWFHFIEVSINNCYYFLVDNL 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 306/678 (45%), Positives = 404/678 (59%), Gaps = 51/678 (7%)

Query: 43  LHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQI 102
           + + LLQS+A + P+LK L +      G +  Q  P  K+L  LD+SS+   L+ SFLQ 
Sbjct: 249 ISLPLLQSLAKL-PNLKTLDLGNNNFEGTILAQALPSLKNLHKLDLSSS--TLDNSFLQT 305

Query: 103 IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL 162
           IG  + +L  L L N  R + S  I  +GLC L HLQ L +++N L G LP CLAN+TSL
Sbjct: 306 IGR-ITTLTSLKL-NGCRLSGSIPI-AEGLCELKHLQSLDISNNSLTGVLPKCLANLTSL 362

Query: 163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
           + + +S N   G ISSSPL+ LTSI++L LS+N+F+IPISL    NHS LK F+  NNE+
Sbjct: 363 KQIDLSSNHFGGDISSSPLITLTSIQELRLSDNNFQIPISLRSFSNHSELKFFFGYNNEI 422

Query: 223 NAEITQSHSLTAPNFQLSRLSLSS-SYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW 281
            AE+ + H+L  P FQL RL LS  +YG    FPKFL++QH+L     S+++M G  P W
Sbjct: 423 CAEL-EEHNLI-PKFQLQRLHLSGQAYGGALPFPKFLFYQHNLREIYFSNMRMRGGVPNW 480

Query: 282 LLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341
           LLENNT L +L LVN+SL+GPF+LPIH H  L  LDIS+N+   HIP EIG   PSL   
Sbjct: 481 LLENNTNLHELFLVNNSLSGPFQLPIHPHVSLSQLDISDNHLDSHIPTEIGAYFPSLTFL 540

Query: 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHM 401
           ++S N  +G IPSSFG M+ L +LDLS N ++G++P       + L  + LS N L+G +
Sbjct: 541 SMSKNHFNGIIPSSFGYMSSLLVLDLSENNISGKLPS--CFSSLPLVHVYLSQNKLQGSL 598

Query: 402 ---FSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTR 458
              F ++F    L++L L  N   G IS+ + + S +  L L  NNL G+IP  L  L +
Sbjct: 599 EDAFHKSF---ELITLDLSHNQLTGNISEWIGEFSHMSYLLLGYNNLEGRIPNQLCKLDK 655

Query: 459 LQYIIMPNNHLEGPI--------------------------PVEFCQLDLLQILDISDNN 492
           L +I + +N   G I                          P+E     +     IS  N
Sbjct: 656 LSFIDLSHNKFSGHILPCLRFRSSIWYSNLRIYPDRYLIREPLEITTKSVSYSYPISILN 715

Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
           I   +DLSCN L G IPP+IGNL  I  LNLS+N L G IP TFSNL  VESLDLSNN L
Sbjct: 716 IMSGMDLSCNNLTGEIPPEIGNLNHIHVLNLSNNFLIGPIPQTFSNLSEVESLDLSNNSL 775

Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEI-PEWEAQFATFNENSYEGNTFLCGLPLPICRS 611
            G IP  LV+L  LEVFSVA+NNLSG   P    QF+TFNE+SYEGN  LCG PL    +
Sbjct: 776 TGAIPPGLVQLHYLEVFSVAHNNLSGRTPPNMIPQFSTFNESSYEGNPLLCGPPLSRHCT 835

Query: 612 PATMSEASIGNER---DD----NLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWF 664
                EAS   +R   DD      +DT+ F+++F  +Y++++     +LY+N  WRR WF
Sbjct: 836 TQEEEEASSLPKRTSTDDIEESGFMDTDVFYVSFVVTYIMMLLVTAAILYINPNWRRAWF 895

Query: 665 YFVEMWITSCYYFVVDNL 682
           YF++  I +CYYF VDNL
Sbjct: 896 YFIKQSINNCYYFFVDNL 913

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 308/721 (42%), Positives = 421/721 (58%), Gaps = 91/721 (12%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +G+  SL  L L   N T     + +     NLEYL L  ++L+ S+ Q+I ++  SLK 
Sbjct: 264 LGALSSLKNLSLQELNGT---VPSGDFLDLKNLEYLDLSNTALNNSIFQAIGTM-TSLKT 319

Query: 61  LSMSGCEVNGLV-RGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNST 119
           L + GC +NG +   Q F   K+LE+LD+S+T  ALN S  Q IG +M SLK L L   +
Sbjct: 320 LILEGCSLNGQIPTTQDFLDLKNLEYLDLSNT--ALNNSIFQAIG-TMTSLKTLILEGCS 376

Query: 120 RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
              N      QGLC L HLQEL ++DNDL G LP CL N+TSL+ L +SY          
Sbjct: 377 --LNGQIPTTQGLCDLNHLQELDVSDNDLSGVLPSCLPNLTSLQQLSLSY---------- 424

Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 239
                          NH +IP+SL PL+N S+LK FY   NE+ AE    H+L +P FQL
Sbjct: 425 ---------------NHLKIPMSLSPLYNLSKLKSFYGSGNEIFAE-EDDHNL-SPKFQL 467

Query: 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
             L LS   G G  FPKFLYHQ +L+  DL++I++ GEFP WL+ENNT L++L L N SL
Sbjct: 468 ESLYLSG-IGQGGAFPKFLYHQFNLQSLDLTNIQIKGEFPNWLIENNTYLQELHLENCSL 526

Query: 300 AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
            GPF LP +SH  L  L IS N+F+G IP EIG  LP L V  +S N  +GSIP S GN+
Sbjct: 527 LGPFLLPDNSHVNLSFLSISMNHFQGQIPSEIGARLPGLEVLFMSENGFNGSIPFSLGNI 586

Query: 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN 419
           + L +LDLSNN L G+IP  +     +LE L LS N+  G +  R  + + L  + L  N
Sbjct: 587 SLLEVLDLSNNSLQGQIPGWIG-NMSSLEFLDLSRNNFSGLLPPRFGSSSKLKFIYLSRN 645

Query: 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ 479
           +  G I+ +    S +  L L++N+L+G+IP W+  L+ L+++++  N+LEG IP+   +
Sbjct: 646 NLQGPIAMAFHDSSEIFALDLSHNDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIHLYR 705

Query: 480 LDLLQILDISDNNISGRL------------------------------------------ 497
           LD L ++D+S N++SG +                                          
Sbjct: 706 LDQLTLIDLSHNHLSGNILSWMISTYNFPVENTYYDSLSSSQQSFEFTTKNVSLSYRGNI 765

Query: 498 -------DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550
                  D SCN   G IPP+IGNL+ ++ LNLSHN+LTG IP TFSNLK +ESLDLS N
Sbjct: 766 IWYFIGIDFSCNNFTGQIPPEIGNLSMLKVLNLSHNNLTGPIPPTFSNLKEIESLDLSYN 825

Query: 551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP-IC 609
           KL+G+IP +L+EL +LEVFSVA+NNLSG+ P   AQFATF E+ Y+ N FLCG PLP IC
Sbjct: 826 KLDGEIPPRLIELFSLEVFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKIC 885

Query: 610 RS--PATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFV 667
            +  P + +  S  NE +   +D   F+++F  +Y++V+  I +VL +N YWRR WF+F+
Sbjct: 886 GAAMPPSPTPTSTNNEDNGGFMDVEVFYVSFGVAYIMVLLVIGVVLRINLYWRRAWFHFI 945

Query: 668 E 668
           E
Sbjct: 946 E 946

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134609|ref|XP_002327446.1| predicted protein [Populus trichocarpa] gi|222836000|gb|EEE74421.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 303/708 (42%), Positives = 412/708 (58%), Gaps = 89/708 (12%)

Query: 27  LHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL 86
           + + ++LE L LD  SL    LQS+ ++ PSLKNL++     +G V  +GF   K+LE+L
Sbjct: 1   MQNLSSLESLYLDGCSLDEHSLQSLGAL-PSLKNLTLQA--FSGSVPFRGFLDLKNLEYL 57

Query: 87  DMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADN 146
           D+S     LN S  Q I + M SLK L L +        R + QGLC L HLQEL M DN
Sbjct: 58  DLSYN--TLNNSIFQAI-KMMTSLKTLILQSCKL---DGRTIAQGLCDLNHLQELSMYDN 111

Query: 147 DLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPL 206
           DL G LP CLAN+TSL                         ++L LS+NH +IP+SL PL
Sbjct: 112 DLNGFLPLCLANLTSL-------------------------QQLDLSSNHLKIPMSLSPL 146

Query: 207 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEY 266
           +N S+LK F   +NE+  E    H+L+ P FQL  +SLSS       FPKFLYHQ  L+ 
Sbjct: 147 YNLSKLKYFDGSDNEIYTE-EDDHNLS-PKFQLESISLSSHGQGAGAFPKFLYHQFSLQS 204

Query: 267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGH 326
             L++I++ GEFP WL+ENNT L  LSL N SL GPF LP +SH  L  L IS N F+G 
Sbjct: 205 LALTNIQIKGEFPNWLIENNTYLHDLSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGK 264

Query: 327 IPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVN 386
           IP EIG  LP L V  +S N  +GS+P S GN++ L++LDLSNN L G+IP  +     +
Sbjct: 265 IPSEIGARLPGLEVLLMSDNGFNGSVPFSLGNISSLQLLDLSNNSLQGQIPGWIG-NMSS 323

Query: 387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS 446
           LE L LS N+  G +  R    +NL  + L  N   G I+ +    S +  L L++NNL+
Sbjct: 324 LEFLDLSVNNFSGRLPPRFDTSSNLRYVYLSRNKLQGPIAMTFYNSSEIFALDLSHNNLT 383

Query: 447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL--------- 497
           G IP+W+  L+ L+++++  N+LEG IP+  C+LD L ++D+S N++SG +         
Sbjct: 384 GSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHLSGNILSWMISSHP 443

Query: 498 ----------------------------------------DLSCNKLIGPIPPKIGNLTR 517
                                                   D SCN  IG IPP+IGNL+ 
Sbjct: 444 FPQEYDSYDYLSSSQQSFEFTTKNVSLSYRGNIIQYFTGIDFSCNNFIGEIPPEIGNLSM 503

Query: 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           I+ LNLSHN LTG IP TFSNLK +ESLDLS NKL+G+IP QL+EL +LE FSVA+NNLS
Sbjct: 504 IKVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNKLDGEIPPQLIELFSLEFFSVAHNNLS 563

Query: 578 GEIPEWEAQFATFNENSYEGNTFLCGLPLP-ICRS--PATMSEASIGNERDDNLIDTNSF 634
           G+     AQF+TF E+ Y+ N FLCG PLP +C +  P + +  S  NE D   +D   F
Sbjct: 564 GKTLARVAQFSTFEESCYKDNPFLCGEPLPKMCGAAMPLSPTPTSTNNEDDGGFMDMEVF 623

Query: 635 FITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYFVVDNL 682
           ++TF  +Y++++  I  +LY+N YWR+ WF+F+E+ I +  YF+V +L
Sbjct: 624 YVTFGVAYIMMLLVIGAILYINPYWRQAWFHFIEVSINNLLYFLVGHL 671

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106950|ref|XP_002333589.1| predicted protein [Populus trichocarpa] gi|222837497|gb|EEE75876.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 300/682 (43%), Positives = 402/682 (58%), Gaps = 87/682 (12%)

Query: 32  NLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLV-RGQGFPHFKSLEHLDMSS 90
           NLEYL L +++L+ S+ Q+I ++  SL+ L +  C ++G +   QGF + K+LE LD+SS
Sbjct: 216 NLEYLDLSYNTLNNSIFQAIGTM-TSLRTLILHSCRLDGRIPTTQGFFNLKNLEFLDLSS 274

Query: 91  TRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG 150
               L+ + LQ I  +MPSLK L L N +   N      QGLC L HLQELYM DNDL G
Sbjct: 275 N--TLSNNILQTI-RTMPSLKTLWLQNCS--LNGQLPTTQGLCDLNHLQELYMNDNDLSG 329

Query: 151 SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHS 210
            LP CLANMTSL                         ++LYLS+NH +IP+SL PL+N S
Sbjct: 330 FLPPCLANMTSL-------------------------QRLYLSSNHLKIPMSLSPLYNLS 364

Query: 211 RLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLS 270
           +LK FY   NE+ AE    H+LT P FQL  LSLS+   +   FPKFLYHQ  L+  DL+
Sbjct: 365 KLKSFYGSGNEIYAE-EDDHNLT-PKFQLESLSLSNGGQNTRAFPKFLYHQFSLQSLDLT 422

Query: 271 HIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLE 330
           +I++ GEFP WL+ENNT L+ LSL N SL+GPF LP  SH  L  L IS N+F+G IP E
Sbjct: 423 NIQIKGEFPNWLIENNTYLKLLSLENCSLSGPFLLPKSSHVNLSFLSISMNHFQGQIPSE 482

Query: 331 IGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESL 390
           IG     L V  +S N  +GSIPSS GNM+ +  LDLSNN L G+IP  +     +LE L
Sbjct: 483 IGAHFSGLEVLLMSDNGFNGSIPSSLGNMSLMYELDLSNNSLQGQIPGWIG-NMSSLEFL 541

Query: 391 VLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP 450
            LS N+L G +  R    + L  + L  N   G I+ + S  S +  L L++N+L+G+IP
Sbjct: 542 DLSRNNLSGPLPPRFGTSSKLRDVFLSRNRLQGPIAMAFSDSSEIFALDLSHNDLTGRIP 601

Query: 451 RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR-------------- 496
            W+  L+ L+++++  N+LEG IP+  C+LD L ++D+S N +SG               
Sbjct: 602 EWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTVIDLSHNYLSGNILSWMISTHPFPIQ 661

Query: 497 -----------------------------------LDLSCNKLIGPIPPKIGNLTRIQTL 521
                                              +D SCN   G IPP+IGNL +I+ L
Sbjct: 662 YNSHYSMFSSQQSFEFTIKNVSFPYKGSIIQYLTGIDFSCNNFTGEIPPEIGNLNKIKAL 721

Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
           NLSHN LTG I STFSNLK +ESLDLS NKL+G+IP +L+EL +LE FSV +NNLSG+ P
Sbjct: 722 NLSHNSLTGPIQSTFSNLKEIESLDLSYNKLDGEIPPRLIELFSLEFFSVTHNNLSGKTP 781

Query: 582 EWEAQFATFNENSYEGNTFLCGLPL-PICRS--PATMSEASIGNERDDNLIDTNSFFITF 638
              AQFATF E+ Y+ N FLCG PL  IC +  P++ +  S  NE D   +D   F+++F
Sbjct: 782 ARVAQFATFEESCYKDNLFLCGEPLTKICGAAMPSSSTPTSRNNEDDGGFMDIEIFYVSF 841

Query: 639 TTSYVIVIFGIVIVLYVNSYWR 660
             +Y++V+  I  VL++N YWR
Sbjct: 842 GVAYIMVLLVIGAVLHINPYWR 863

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 316/766 (41%), Positives = 430/766 (56%), Gaps = 138/766 (18%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +G+FP+L T+YL   N  D   T  EL + ++LE L L+   L  + +Q + ++  SLK 
Sbjct: 146 LGAFPNLTTVYL---NDNDFKGTILELQNLSSLEKLYLNGCFLDENSIQILGAL-SSLKY 201

Query: 61  LSMSGCEVNGLVRGQGFPH-FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNST 119
           LS+   EV+G+V  QGF +  K+LEHL  S++   L+ S LQ IG ++ SLK L L    
Sbjct: 202 LSLY--EVSGIVPSQGFLNILKNLEHLYSSNS--TLDNSILQSIG-TITSLKILELVKCR 256

Query: 120 RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
                   L  GLC+L +LQEL M DND+ G L  CLAN+TSL                 
Sbjct: 257 LNGQ----LPIGLCNLNNLQELDMRDNDISGFLIPCLANLTSL----------------- 295

Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 239
                   ++L LS+NH +IP+SL PL+N S+LK F+  +NE+ AE    H+L +P FQL
Sbjct: 296 --------QRLDLSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAE-EDDHNL-SPKFQL 345

Query: 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
             L LS+       FP+FLYHQ +L+  DL++I+M G+FP WL+ENNT L+ L L N SL
Sbjct: 346 QSLYLSNHGQGARAFPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSL 405

Query: 300 AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
           +GPF LP +SH  L +L IS N  +G IP EIG  LP L V ++S N  +GSIPSS  NM
Sbjct: 406 SGPFLLPKNSHMNLSILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNM 465

Query: 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANL-------- 411
           + LR LDLSNN LTG IP+HL         L+LSNNSL+G +     N ++L        
Sbjct: 466 SLLRDLDLSNNVLTGRIPKHLTTSLCLFNFLILSNNSLQGAIPDSMSNCSSLQLLDVSNN 525

Query: 412 ------------MS----LQLEGNHFIGEISQSLSKCSSLEGLFLN-------------- 441
                       MS    L L  N+F G +  ++S  S+L  ++L+              
Sbjct: 526 NLSPRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGLITKAFYN 585

Query: 442 ----------NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491
                     +NNL G IP W+G L++L+Y+++  N LEG IP++ C+LD L ++D+S N
Sbjct: 586 FSTLLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHN 645

Query: 492 NISGRL------------------------------------------------DLSCNK 503
           ++SG +                                                D SCN 
Sbjct: 646 HLSGNILSCMTSLAPFSALTDATIVETSQQYLEFTTKNVSLIYRGSIVKLFSGIDFSCNN 705

Query: 504 LIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563
             G IPP+I NL++I+ LNLSHN L G IP TFS LK +ESLDLS+NKL+G+IP QL EL
Sbjct: 706 FTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDGEIPPQLTEL 765

Query: 564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP-ICRSPATMSEASIGN 622
            +LE+FSVA+NNLSG+ P   AQFATF E+ Y+ N FLCG PLP IC +    S  S+ N
Sbjct: 766 FSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGASMLPSPTSMNN 825

Query: 623 ERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVE 668
           E +   ID   F+++F  +Y++V+  IV VLY+N YWRR WF+F E
Sbjct: 826 EDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.748	0.568	0.341	2.7e-99
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.772	0.551	0.345	2.3e-71
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.802	0.553	0.334	9.8e-69
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.741	0.471	0.345	5.3e-67
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.776	0.600	0.326	4.3e-61
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.748	0.528	0.332	6e-61
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.776	0.572	0.308	2.2e-52
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.737	0.405	0.308	3.3e-51
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.883	0.487	0.289	2.3e-50
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.753	0.510	0.294	3.5e-50

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 2.7e-99, Sum P(2) = 2.7e-99
 Identities = 186/545 (34%), Positives = 259/545 (47%)

Query:    25 QELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84
             + L    NL+ L+   +  + S+   + +   SL  LS+    + G +  +   +  +LE
Sbjct:   115 KSLRRLRNLQILNFSSNEFNNSIFPFLNAA-TSLTTLSLRRNNMYGPIPLKELKNLTNLE 173

Query:    85 HLDMSSTRIALNTSFLQIIGESMPSLKYL-SLSNSTRGTNSSRILDQGLCSLMHLQELYM 143
              LD+S  RI      + +     P LK L +L  S+ G  SS    Q  C + +LQEL +
Sbjct:   174 LLDLSGNRI---DGSMPV--REFPYLKKLKALDLSSNGIYSSMEW-QVFCEMKNLQELDL 227

Query:   144 ADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISL 203
                +  G LP C  N+  LR L +S NQLTG+I  S    L S+E L LS+N F    SL
Sbjct:   228 RGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSL 286

Query:   204 EPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHD 263
              PL N ++LK+F   + +   ++ +  S   P FQLS L L     +    P FL +Q +
Sbjct:   287 NPLTNLTKLKVFIFSSKDDMVQV-KIESTWQPLFQLSVLVLRLCSLEKI--PNFLMYQKN 343

Query:   264 LEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF 323
             L   DLS  +++G  PTWLLENN +L  L L N+S    F++P   H  L +LD S NN 
Sbjct:   344 LHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQVLDFSENNI 401

Query:   324 RGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVG 383
              G  P   G +LP+L   N S N   G+ PSS G M  +  LDLS N L+GE+P+     
Sbjct:   402 GGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSS 461

Query:   384 CXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN 443
             C              GH   R  N  +L+ L++  N F G+I   L     L  L ++NN
Sbjct:   462 CFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNN 521

Query:   444 NLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGR------- 496
              L G++P  L     L ++ +  N L G +P               +NN +G        
Sbjct:   522 FLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHV---SLDNVLFLHNNNFTGPIPDTFLG 578

Query:   497 ----LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
                 LDL  NKL G IP  + +   I  L L  N LTG IPST      +  LDLS+NKL
Sbjct:   579 SIQILDLRNNKLSGNIPQFV-DTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKL 637

Query:   553 NGKIP 557
             NG IP
Sbjct:   638 NGFIP 642

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 196/568 (34%), Positives = 294/568 (51%)

Query:    25 QELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84
             + L     LE L L  +  + S+   +++   SL  L +    ++G    +      +LE
Sbjct:   126 KSLRKLRKLEILDLASNKFNNSIFHFLSAA-TSLTTLFLRSNNMDGSFPAKELRDLTNLE 184

Query:    85 HLDMSSTRIALNTSF-LQIIGESMPSLKYLSLS-NSTRG---------TNSSRILDQGLC 133
              LD+S  R   N S  +Q +  S+  LK L LS N   G         T+    +  G+C
Sbjct:   185 LLDLSRNRF--NGSIPIQELS-SLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGIC 241

Query:   134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
              L ++QEL ++ N L G LP CL ++T LR+L +S N+LTG++ SS L  L S+E L L 
Sbjct:   242 ELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLSLF 300

Query:   194 NNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFI 253
             +N F    S   L N S L +    +   + ++  S S   P FQLS ++L S   +   
Sbjct:   301 DNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSCNMEKV- 358

Query:   254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL 313
              P FL HQ DL + DLS   ++G+ P+WLL NNTKL+ L L N+ L   F++P  +H  L
Sbjct:   359 -PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIPKSAHNLL 416

Query:   314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT 373
               LD+S N+F    P  IG I P L   N S N    ++PSS GNMN ++ +DLS N   
Sbjct:   417 -FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFH 475

Query:   374 GEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCS 433
             G +P     GC              G +F  + N  N++ L ++ N F G+I Q L    
Sbjct:   476 GNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLI 535

Query:   434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNI 493
             +LE L ++NNNL+G IP W+G+L  L  +++ +N L+G IP+             + +++
Sbjct:   536 NLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSL----------FNKSSL 585

Query:   494 SGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
                LDLS N L G IPP+  +   +  L L  N L+G+IP T   L +VE LDL NN+ +
Sbjct:   586 Q-LLDLSANSLSGVIPPQHDSRNGVVLL-LQDNKLSGTIPDTL--LANVEILDLRNNRFS 641

Query:   554 GKIPHQLVELKTLEVFSVAYNNLSGEIP 581
             GKIP + + ++ + +  +  NN +G+IP
Sbjct:   642 GKIP-EFINIQNISILLLRGNNFTGQIP 668

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 9.8e-69, P = 9.8e-69
 Identities = 197/589 (33%), Positives = 293/589 (49%)

Query:    27 LHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL 86
             L  F  LE L L   +L  S +    +   SLK+LS+ G  + G    +      ++E L
Sbjct:   145 LRRFRKLEILDLS-DNLFNSRIFPFLNSATSLKSLSLWGNNMGGPFPAKELRDLTNVELL 203

Query:    87 DMSSTRIALNTSFLQIIGESMPSLKYLSLSNST-------RGTNSSRILDQGLCSLMHLQ 139
             D+S  R   N S       ++  LK L LS++        +G  +      G C   +++
Sbjct:   204 DLSRNRF--NGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNME 261

Query:   140 ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI 199
             EL +++N L G  P CL ++T LR+L +S NQLTG++ S+ L +L S+E L L  N+F  
Sbjct:   262 ELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYLSLFGNNFEG 320

Query:   200 PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLY 259
               SL  L N S+LK+   D+   + E+ +  +   P FQL  ++L S   +    P FL 
Sbjct:   321 FFSLGLLANLSKLKVLRLDSQSNSLEV-EFETSWKPKFQLVVIALRSCNLEKV--PHFLL 377

Query:   260 HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDIS 319
             HQ DL + DLS  +++G FP+WLLENNTKL  L L N+S    F+LP  +H  L  L++S
Sbjct:   378 HQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAHNLL-FLNVS 435

Query:   320 NNNFRGHIPLE-IGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPE 378
              N F  H+ L+  G ILP L   N++ N   G++PSS  NM  +  LDLS+N+  G++P 
Sbjct:   436 VNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPR 494

Query:   379 HLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL 438
                 GC              G +F    N   L  + ++ N F G I +      SL  L
Sbjct:   495 RFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVL 554

Query:   439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNIS--GR 496
              ++NN L+G IP W+G+   L  + + NN LEG IP                 NIS    
Sbjct:   555 DISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLF-------------NISYLQL 601

Query:   497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI 556
             LDLS N+L G IPP + ++     L L +N+L+G IP T   L +V  LDL NN+L+G +
Sbjct:   602 LDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTL--LLNVIVLDLRNNRLSGNL 659

Query:   557 PHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP 605
             P + +  + + +  +  NN +G+IP      +         N F   +P
Sbjct:   660 P-EFINTQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIP 707

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 5.3e-67, P = 5.3e-67
 Identities = 186/539 (34%), Positives = 275/539 (51%)

Query:   103 IGESMP-SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTS 161
             +G  +P SL+ L    +         L  G+C LM L+EL ++ N L  SLP+CL N+T 
Sbjct:   326 LGLEIPTSLQVLDFKRNQLSLTHEGYL--GICRLMKLRELDLSSNALT-SLPYCLGNLTH 382

Query:   162 LRILYVSYNQLTGSISSSPLVHLTSI-EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
             LR L +S NQL G++SS  +  L S+ E L L +N+F        L N +RL +F   ++
Sbjct:   383 LRTLDLSNNQLNGNLSSF-VSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKL-SS 440

Query:   221 ELNAEITQSHSLTAPNFQLSRLSLSS-SYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
             ++     Q+ S  AP FQL  L LS+ S G   +   FL HQ DL + DLSH K+ G FP
Sbjct:   441 KVGVIQVQTESSWAPLFQLKMLYLSNCSLGSTML--GFLVHQRDLCFVDLSHNKLTGTFP 498

Query:   280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
             TWL++NNT+L+ + L  +SL    +LPI  H  L +LDIS+N     I  +IG + P+L 
Sbjct:   499 TWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLR 556

Query:   340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKG 399
               N S N   G+IPSS G M  L++LD+S+N L G++P     GC             +G
Sbjct:   557 FMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQG 616

Query:   400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL 459
              +FS++ NL  L+ L L+GN+F G + + L K  +L  L +++N  SG +P W+G ++RL
Sbjct:   617 KIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRL 676

Query:   460 QYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLDLSCNKLIGPIPPKIGNLTRIQ 519
              Y+ M  N L+GP P  F                   +D+S N   G IP  + N   ++
Sbjct:   677 SYLYMSGNQLKGPFP--FLRQSPWVEV----------MDISHNSFSGSIPRNV-NFPSLR 723

Query:   520 TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579
              L L +N+ TG +P        +E LDL NN  +GKI + + +   L +  +  N+    
Sbjct:   724 ELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTY 783

Query:   580 IPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITF 638
             IP    Q +         N F  G P+P C S  +   A   +     + D +  +ITF
Sbjct:   784 IPGKICQLSEVGLLDLSHNQFR-G-PIPSCFSKMSFG-AEQNDRTMSLVADFDFSYITF 839

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 187/572 (32%), Positives = 286/572 (50%)

Query:    27 LHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFP-----HFK 81
             L S  NLE L L  +    S+L  +     SLK L +     + L +G GFP     +  
Sbjct:    75 LGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKTLILH----DNLFKG-GFPVQELINLT 128

Query:    82 SLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQEL 141
             SLE LD+   + +      ++   ++ +L+ L LSN+     S  +  QG+C L  LQEL
Sbjct:   129 SLEVLDLKFNKFSGQLPTQELT--NLRNLRALDLSNNKF---SGSLQKQGICRLEQLQEL 183

Query:   142 YMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
              ++ N   G +P C +  + LR+L +S N L+G I    +    S+E L L +N F    
Sbjct:   184 RLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISDFKSMEYLSLLDNDFEGLF 242

Query:   202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQ 261
             SL  +   + LK+F   +     +I +++       QLS + LS     G I P FL++Q
Sbjct:   243 SLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHC-NLGKI-PGFLWYQ 300

Query:   262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNN 321
              +L   DLS+  ++G FPTWLLENNT+L+ L L N+S      LP  + +RL +LD+S N
Sbjct:   301 QELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-RTMRRLQILDLSVN 358

Query:   322 NFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLA 381
             NF   +P ++G IL SL   N+S N   G++PSS   M  +  +DLS N  +G++P +L 
Sbjct:   359 NFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLF 418

Query:   382 VGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN 441
              GC              G +  ++ +  +L++L ++ N F G+I ++L     L  + L+
Sbjct:   419 TGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLS 478

Query:   442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRL---- 497
             NN L+G IPRWLG+   L+ + + NN L+G IP              S N +SG L    
Sbjct:   479 NNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRS 537

Query:   498 --------DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN 549
                     DL  N L G IP  +    R+  L+L +N L+G+IP  F +   +  + L  
Sbjct:   538 SSDYGYILDLHNNNLTGSIPDTLWYGLRL--LDLRNNKLSGNIP-LFRSTPSISVVLLRE 594

Query:   550 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
             N L GKIP +L  L  + +   A+N L+  IP
Sbjct:   595 NNLTGKIPVELCGLSNVRMLDFAHNRLNESIP 626

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 6.0e-61, P = 6.0e-61
 Identities = 185/556 (33%), Positives = 279/556 (50%)

Query:    43 LHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQI 102
             L I  L+++  +   L +LS SG   NG +    F H + L+ LD+S+   +      ++
Sbjct:   178 LPIKELKNLTKL--ELLDLSRSG--YNGSI--PEFTHLEKLKALDLSANDFSSLVELQEL 231

Query:   103 IGESMPSLKYLSLS-NSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTS 161
               + + +L+ L L+ N   G     +     C + +L++L +  N   G LP CL N+  
Sbjct:   232 --KVLTNLEVLGLAWNHLDGPIPKEVF----CEMKNLRQLDLRGNYFEGQLPVCLGNLNK 285

Query:   162 LRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIF-YADNN 220
             LR+L +S NQL+G++ +S    L S+E L LS+N+F    SL PL N ++LK+F  +  +
Sbjct:   286 LRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTS 344

Query:   221 ELNAEITQSHSLTAPNFQLSRLSLS-SSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
             E+    T+S+ L  P FQL+  +L   S G     P FL +Q +L   DLS  +++G+ P
Sbjct:   345 EMLQVETESNWL--PKFQLTVAALPFCSLGK---IPNFLVYQTNLRLVDLSSNRLSGDIP 399

Query:   280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
             TWLLENN +L+ L L N+S    F++P   HK L +LD S N+  G +P  IG +LP L 
Sbjct:   400 TWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLL 457

Query:   340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKG 399
               N S N   G++PSS G MN +  LDLS N  +GE+P  L  GC              G
Sbjct:   458 HMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSG 517

Query:   400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG-DLTR 458
              +      L +L+ L++  N F GEI   L    +L     +NN L+G I   +  D + 
Sbjct:   518 PILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSH 577

Query:   459 LQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLDLSC-------------NKLI 505
             L  +++ NN LEG +P              S N +SG L  S              N   
Sbjct:   578 LIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFT 637

Query:   506 GPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 565
             GP+P  +  L     L+L +N L+GSIP  F N   + +L L  N L G IP +L +L +
Sbjct:   638 GPLPVTL--LENAYILDLRNNKLSGSIPQ-FVNTGKMITLLLRGNNLTGSIPRKLCDLTS 694

Query:   566 LEVFSVAYNNLSGEIP 581
             + +  ++ N L+G IP
Sbjct:   695 IRLLDLSDNKLNGVIP 710

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 2.2e-52, P = 2.2e-52
 Identities = 177/573 (30%), Positives = 262/573 (45%)

Query:    25 QELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84
             + L    NL+ + L  +  + S    + +   SL  L ++  E++G    +G     +LE
Sbjct:   118 RSLSGLRNLKIMDLSTNYFNYSTFPFLNAA-TSLTTLILTYNEMDGPFPIKGLKDLTNLE 176

Query:    85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMA 144
              LD+ + +  LN S  ++I   +  LK L LS S + ++S  +  Q L +L++L+ L +A
Sbjct:   177 LLDLRANK--LNGSMQELI--HLKKLKALDLS-SNKFSSSMEL--QELQNLINLEVLGLA 229

Query:   145 DNDLRGSLPW-CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR--IPI 201
              N + G +P      + +LR L +  N   G I    L  L  +  L LS+N     +P 
Sbjct:   230 QNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLSGDLPS 288

Query:   202 SLEPLFNHSRLKIFYADNN-ELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYH 260
             S   L +   L +  +DNN + +  +    +LT   F +     S         P FL +
Sbjct:   289 SFSSLESLEYLSL--SDNNFDGSFSLNPLTNLTNLKFVVVLRFCSLEK-----IPSFLLY 341

Query:   261 QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISN 320
             Q  L   DLS   ++G  PTWLL NN +L  L L N+S    F +P   H  L + D S 
Sbjct:   342 QKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQIFDFSA 399

Query:   321 NNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHL 380
             NN  G  P ++   LP+L   N S N   G  P+S G M  +  LDLS N  +G++P   
Sbjct:   400 NNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSF 458

Query:   381 AVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL 440
               GC              G    R  N  +L  L+++ N F G I   LS  + L  L +
Sbjct:   459 VTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDM 518

Query:   441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLD-- 498
             +NN LSG IPRWL +   L Y+++ NN LEG IP              S N  SG L   
Sbjct:   519 SNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSH 578

Query:   499 ----------LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS 548
                       L  N   GPIP  +  L  +Q L+L +N L+GSIP  F + + +  L L 
Sbjct:   579 VDSELGIYMFLHNNNFTGPIPDTL--LKSVQILDLRNNKLSGSIPQ-FDDTQSINILLLK 635

Query:   549 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
              N L G IP +L +L  + +  ++ N L+G IP
Sbjct:   636 GNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIP 668

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 3.3e-51, P = 3.3e-51
 Identities = 174/564 (30%), Positives = 282/564 (50%)

Query:    82 SLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQEL 141
             SL+ L +S T+++      +I   +  SLK L LSN+T    + +I D  L  L+ L  L
Sbjct:   338 SLKQLFLSETQLSGEIP-AEI--SNCQSLKLLDLSNNTL---TGQIPDS-LFQLVELTNL 390

Query:   142 YMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
             Y+ +N L G+L   ++N+T+L+   + +N L G +    +  L  +E +YL  N F   +
Sbjct:   391 YLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKE-IGFLGKLEIMYLYENRFSGEM 449

Query:   202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQ 261
              +E + N +RL+      N L+ EI  S         L+RL L  +   G I P  L + 
Sbjct:   450 PVE-IGNCTRLQEIDWYGNRLSGEIPSSIGRLK---DLTRLHLRENELVGNI-PASLGNC 504

Query:   262 HDLEYADLSHIKMNGEFPT----------WLLENNTKLRQL--SLVNDSLAGPFRLPIHS 309
             H +   DL+  +++G  P+          +++ NN+    L  SL+N  L    R+   S
Sbjct:   505 HQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLIN--LKNLTRINFSS 562

Query:   310 HKRLGML------------DISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFG 357
             +K  G +            D++ N F G IPLE+G    +L    +  N   G IP +FG
Sbjct:   563 NKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKST-NLDRLRLGKNQFTGRIPRTFG 621

Query:   358 NMNFLRILDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLE 417
              ++ L +LD+S N L+G IP  L + C              G + +    L  L  L+L 
Sbjct:   622 KISELSLLDISRNSLSGIIPVELGL-CKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLS 680

Query:   418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEF 477
              N F+G +   +   +++  LFL+ N+L+G IP+ +G+L  L  + +  N L GP+P   
Sbjct:   681 SNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTI 740

Query:   478 CXXXXXXXXXXSDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT-LNLSHNDLTGSIPSTF 536
                                L LS N L G IP +IG L  +Q+ L+LS+N+ TG IPST 
Sbjct:   741 GKLSKLF-----------ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTI 789

Query:   537 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYE 596
             S L  +ESLDLS+N+L G++P Q+ ++K+L   +++YNNL G++ +   QF+ +  +++ 
Sbjct:   790 STLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFV 846

Query:   597 GNTFLCGLPLPICRSPATMSEASI 620
             GN  LCG PL  C    + ++ S+
Sbjct:   847 GNAGLCGSPLSHCNRAGSKNQRSL 870

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 2.3e-50, P = 2.3e-50
 Identities = 196/678 (28%), Positives = 322/678 (47%)

Query:    25 QELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE 84
             + L    NL+ L L  ++L   + +   ++   L +L ++   ++G +      +  +LE
Sbjct:   281 KSLADLGNLQTLDLSANNLTGEIPEEFWNM-SQLLDLVLANNHLSGSLPKSICSNNTNLE 339

Query:    85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMA 144
              L +S T+++     + +      SLK L LSN++   +    + + L  L+ L +LY+ 
Sbjct:   340 QLVLSGTQLS---GEIPVELSKCQSLKQLDLSNNSLAGS----IPEALFELVELTDLYLH 392

Query:   145 DNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLE 204
             +N L G+L   ++N+T+L+ L + +N L G +    +  L  +E L+L  N F   I  E
Sbjct:   393 NNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKE-ISALRKLEVLFLYENRFSGEIPQE 451

Query:   205 PLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDL 264
              + N + LK+     N    EI  S        +L+ L L  +   G + P  L + H L
Sbjct:   452 -IGNCTSLKMIDMFGNHFEGEIPPSIGRLK---ELNLLHLRQNELVGGL-PASLGNCHQL 506

Query:   265 EYADLSHIKMNGEFPT--WLLENNTKLRQLSLVNDSLAG--PFRL-------PIH-SHKR 312
                DL+  +++G  P+    L+    L QL L N+SL G  P  L        I+ SH R
Sbjct:   507 NILDLADNQLSGSIPSSFGFLKG---LEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNR 563

Query:   313 L-GML------------DISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
             L G +            D++NN F   IPLE+G+   +L    +  N L G IP + G +
Sbjct:   564 LNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNS-QNLDRLRLGKNQLTGKIPWTLGKI 622

Query:   360 NFLRILDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGN 419
               L +LD+S+N LTG IP  L + C              G +      L+ L  L+L  N
Sbjct:   623 RELSLLDMSSNALTGTIPLQLVL-CKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSN 681

Query:   420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCX 479
              F+  +   L  C+ L  L L+ N+L+G IP+ +G+L  L  + +  N   G +P     
Sbjct:   682 QFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK 741

Query:   480 XXXXXXXXXSDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT-LNLSHNDLTGSIPSTFSN 538
                              L LS N L G IP +IG L  +Q+ L+LS+N+ TG IPST   
Sbjct:   742 LSKLY-----------ELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGT 790

Query:   539 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGN 598
             L  +E+LDLS+N+L G++P  + ++K+L   +V++NNL G++ +   QF+ +  +S+ GN
Sbjct:   791 LSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSFLGN 847

Query:   599 TFLCGLPLPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSY 658
             T LCG PL  C    +       N +   L    S  I    S +  I G++I L +  +
Sbjct:   848 TGLCGSPLSRCNRVRS-------NNKQQGL-SARSVVIISAISALTAI-GLMI-LVIALF 897

Query:   659 WRRRWFYFVEMWITSCYY 676
             +++R  +F ++   S  Y
Sbjct:   898 FKQRHDFFKKVGHGSTAY 915

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 3.5e-50, P = 3.5e-50
 Identities = 162/550 (29%), Positives = 270/550 (49%)

Query:    81 KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQE 140
             K+   +++S   +AL     + I + +  LK LSLSN+    N + + +       HLQ+
Sbjct:    75 KTSRVIELSLDGLALTGKINRGI-QKLQRLKVLSLSNNNFTGNINALSNNN-----HLQK 128

Query:   141 LYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIP 200
             L ++ N+L G +P  L ++TSL+ L ++ N  +G++S     + +S+  L LS+NH    
Sbjct:   129 LDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQ 188

Query:   201 ISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYH 260
             I    LF  S L       N  +   +    +     +L  L LSS+   G I P  +  
Sbjct:   189 IP-STLFRCSVLNSLNLSRNRFSGNPSFVSGIWRLE-RLRALDLSSNSLSGSI-PLGILS 245

Query:   261 QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISN 320
              H+L+   L   + +G  P+ +      L ++ L ++  +G     +   K L   D+SN
Sbjct:   246 LHNLKELQLQRNQFSGALPSDI-GLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSN 304

Query:   321 NNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHL 380
             N   G  P  IGD+   +H+ + S N L G +PSS  N+  L+ L+LS N+L+GE+PE L
Sbjct:   305 NLLSGDFPPWIGDMTGLVHL-DFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESL 363

Query:   381 AVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKC-SSLEGLF 439
                C              G++    F+L  L  +   GN   G I +  S+   SL  L 
Sbjct:   364 E-SCKELMIVQLKGNDFSGNIPDGFFDLG-LQEMDFSGNGLTGSIPRGSSRLFESLIRLD 421

Query:   440 LNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP--VEFCXXXXXXXXXXS-------- 489
             L++N+L+G IP  +G    ++Y+ +  NH    +P  +EF           S        
Sbjct:   422 LSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPA 481

Query:   490 ---DNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD 546
                ++     L L  N L G IP  IGN + ++ L+LSHN+LTG IP + SNL+ ++ L 
Sbjct:   482 DICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILK 541

Query:   547 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPL 606
             L  NKL+G+IP +L +L+ L + +V++N L G +P  +  F + ++++ +GN  +C    
Sbjct:   542 LEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGDV-FQSLDQSAIQGNLGICS--- 597

Query:   607 PICRSPATMS 616
             P+ R P T++
Sbjct:   598 PLLRGPCTLN 607

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.11450001 hypothetical protein (577 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	689
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  213 bits (545), Expect = 8e-59
 Identities = 202/631 (32%), Positives = 326/631 (51%), Gaps = 50/631 (7%)

Query: 7   LNTLYLLFNNFTDIATTAQELH-SFTN-----LEYLSLDFSSLHISLLQSIA-SIFPSLK 59
           +  L+ LF NF+ +     EL  SF +     L+YLS   SS  + L Q I  +    + 
Sbjct: 13  IFMLFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVV 72

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNST 119
           ++ +SG  ++G +    F     ++ +++S+    L+      I  +  SL+YL+LSN+ 
Sbjct: 73  SIDLSGKNISGKISSAIF-RLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNN- 128

Query: 120 RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
              N +  + +G  S+ +L+ L +++N L G +P  + + +SL++L +  N L G I +S
Sbjct: 129 ---NFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 180 PLVHLTSIEKLYLSNNHF--RIPISLEPLFNHSRLKIFYADNNELNAEI-TQSHSLTAPN 236
            L +LTS+E L L++N    +IP  L  + +   LK  Y   N L+ EI  +   LT+  
Sbjct: 184 -LTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSGEIPYEIGGLTS-- 237

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L+ L L  +   G I P  L +  +L+Y  L   K++G  P  +  +  KL  L L +
Sbjct: 238 --LNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSD 293

Query: 297 DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF 356
           +SL+G     +   + L +L + +NNF G IP+ +   LP L V  +  N   G IP + 
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNL 352

Query: 357 GNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416
           G  N L +LDLS N LTGEIPE L     NL  L+L +NSL+G +        +L  ++L
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE 476
           + N F GE+    +K   +  L ++NNNL G+I     D+  LQ + +  N   G +P +
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-D 470

Query: 477 FCQLDLLQILDISDNNISG-------------RLDLSCNKLIGPIPPKIGNLTRIQTLNL 523
                 L+ LD+S N  SG             +L LS NKL G IP ++ +  ++ +L+L
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 524 SHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
           SHN L+G IP++FS +  +  LDLS N+L+G+IP  L  +++L   ++++N+L G +P  
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Query: 584 EAQFATFNENSYEGNTFLCG----LPLPICR 610
            A F   N ++  GN  LCG      LP C+
Sbjct: 591 GA-FLAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  154 bits (391), Expect = 5e-39
 Identities = 97/273 (35%), Positives = 146/273 (53%), Gaps = 13/273 (4%)

Query: 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG 399
             ++S   + G I S+   + +++ ++LSNNQL+G IP+ +     +L  L LSNN+  G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL 459
            +  R   + NL +L L  N   GEI   +   SSL+ L L  N L GKIP  L +LT L
Sbjct: 133 SI-PRGS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 460 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQ 519
           +++ + +N L G IP E  Q+  L+ + +  NN+SG            IP +IG LT + 
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-----------IPYEIGGLTSLN 239

Query: 520 TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579
            L+L +N+LTG IPS+  NLK+++ L L  NKL+G IP  +  L+ L    ++ N+LSGE
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 580 IPEWEAQFATFNENSYEGNTFLCGLPLPICRSP 612
           IPE   Q           N F   +P+ +   P
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 9e-19
 Identities = 121/416 (29%), Positives = 178/416 (42%), Gaps = 59/416 (14%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +G   SLN L L++NN T        L +  NL+YL L  + L          I PS+ +
Sbjct: 232 IGGLTSLNHLDLVYNNLT--GPIPSSLGNLKNLQYLFLYQNKLS-------GPIPPSIFS 282

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSL-SNST 119
           L                   + L  LD+S   ++     L I    + +L+ L L SN+ 
Sbjct: 283 L-------------------QKLISLDLSDNSLSGEIPELVI---QLQNLEILHLFSNNF 320

Query: 120 RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
            G      +   L SL  LQ L +  N   G +P  L    +L +L +S N LTG I   
Sbjct: 321 TGK-----IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 180 PLVHLTSIEKLYLSNNHF--RIPISLEPLFNHSRLKIFYADNNELNAEITQSHS-LTAPN 236
            L    ++ KL L +N     IP SL    +  R+++    +N  + E+    + L    
Sbjct: 376 -LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL---QDNSFSGELPSEFTKLPLVY 431

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
           F    L +S++   G I  +  +    L+   L+  K  G  P      + +L  L L  
Sbjct: 432 F----LDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSR 484

Query: 297 DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF 356
           +  +G     + S   L  L +S N   G IP E+      L   ++S N L G IP+SF
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC-KKLVSLDLSHNQLSGQIPASF 543

Query: 357 GNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV---LSNNSLKGHMFSRNFNLA 409
             M  L  LDLS NQL+GEIP++L     N+ESLV   +S+N L G + S    LA
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLG----NVESLVQVNISHNHLHGSLPSTGAFLA 595

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.9 bits (197), Expect = 2e-15
 Identities = 58/190 (30%), Positives = 82/190 (43%), Gaps = 32/190 (16%)

Query: 478 CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS 537
           CQ D               L L    L G IP  I  L  +Q++NLS N + G+IP +  
Sbjct: 409 CQFD-----STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 538 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA----QFATFNEN 593
           ++  +E LDLS N  NG IP  L +L +L + ++  N+LSG +P          A+FN  
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN-- 521

Query: 594 SYEGNTFLCGLP-LPICRSPATMSEASIGNERDDNLIDTNSFFITFTTSYVIVIFGIVIV 652
            +  N  LCG+P L  C  P     A IG              I F  S       + +V
Sbjct: 522 -FTDNAGLCGIPGLRAC-GPHLSVGAKIG--------------IAFGVSVAF----LFLV 561

Query: 653 LYVNSYWRRR 662
           +    +W+RR
Sbjct: 562 ICAMCWWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 292 LSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS 351
           L L N  L G     I   + L  +++S N+ RG+IP  +G I  SL V ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 352 IPSSFGNMNFLRILDLSNNQLTGEIPEHL 380
           IP S G +  LRIL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 1e-11
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 12/117 (10%)

Query: 435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 494
           ++GL L+N  L G IP  +  L  LQ I +  N + G IP     +  L++         
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV--------- 470

Query: 495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF-SNLKHVESLDLSNN 550
             LDLS N   G IP  +G LT ++ LNL+ N L+G +P+     L H  S + ++N
Sbjct: 471 --LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           L + N   RG IP +I   L  L   N+S N++ G+IP S G++  L +LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 376 IPEHLAVGCVNLESLVLSNNSLKG 399
           IPE L     +L  L L+ NSL G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 9e-09
 Identities = 33/88 (37%), Positives = 48/88 (54%)

Query: 387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS 446
           ++ L L N  L+G + +    L +L S+ L GN   G I  SL   +SLE L L+ N+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 447 GKIPRWLGDLTRLQYIIMPNNHLEGPIP 474
           G IP  LG LT L+ + +  N L G +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 135 LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN 194
           L HLQ + ++ N +RG++P  L ++TSL +L +SYN   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 195 NHF--RIPISL 203
           N    R+P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 423 GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL 482
           G I   +SK   L+ + L+ N++ G IP  LG +T L+ + +  N   G IP    QL  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 483 LQILDISDNNISGRL 497
           L+IL+++ N++SGR+
Sbjct: 492 LRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 20/231 (8%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410
               +  N+  L  LDL+ N+L   I E L +   NL SL L NN++           +N
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELT--NLTSLDLDNNNITDIPPLIGLLKSN 141

Query: 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470
           L  L L  N  I  +   L    +L+ L L+ N+LS  +P+ L +L+ L  + +  N + 
Sbjct: 142 LKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG 530
             +P E   L  L+ LD+S+N+I              +   + NL  +  L LS+N L  
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII------------ELLSSLSNLKNLSGLELSNNKLE- 245

Query: 531 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
            +P +  NL ++E+LDLSNN++       L  L  L    ++ N+LS  +P
Sbjct: 246 DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 496 RLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
            LDLS N+L   IP      L  ++ L+LS N+LT   P  FS L  + SLDLS N L
Sbjct: 4   SLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 517 RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 576
            +++L+LS+N LT      F  L +++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 410 NLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHL 469
           NL SL L  N        +     +L+ L L+ NNL+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 288 KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNA 347
            L+ ++L  +S+ G     + S   L +LD+S N+F G IP  +G  L SL + N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 348 LDGSIPSSFG 357
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS 396
           +L   ++S N L      +F  +  L++LDLS N LT  I      G  +L SL LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 397 L 397
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 137 HLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNH 196
           +L+ L +++N L          + +L++L +S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 197 F 197
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLANLMSLQLEG 418
           L+ LDLSNN+LT  IP+    G  NL+ L LS N+L       FS    L +L SL L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 419 NHF 421
           N+ 
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 493
           +L+ L L+NN L+         L  L+ + +  N+L    P  F  L  L+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 53/239 (22%)

Query: 362 LRILDLSNNQLTGEIPEHLAV------GCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415
           L+ L LS N+ TG IP  L            L+ L LS+N+L                  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL-----------------G 94

Query: 416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG----KIPRWLGDLT-RLQYIIMPNNHLE 470
            +G   +    +SL + SSL+ L LNNN L       + + L DL   L+ +++  N LE
Sbjct: 95  PDGCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150

Query: 471 G----PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526
           G     +         L+ L++++N I           I  +   +     ++ L+L++N
Sbjct: 151 GASCEALAKALRANRDLKELNLANNGIGDAG-------IRALAEGLKANCNLEVLDLNNN 203

Query: 527 DLT----GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-----LKTLEVFSVAYNNL 576
            LT     ++  T ++LK +E L+L +N L       L         +L   S++ N++
Sbjct: 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 33/229 (14%)

Query: 350 GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLA--VGCVNLESLVLSNNSL---KGHMFSR 404
            S+         L+ LDLS+N L  +    L   +   +L+ L L+NN L      + ++
Sbjct: 71  QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130

Query: 405 NF--NLANLMSLQLEGNHFIGEISQSLSK----CSSLEGLFLNNNNLSG----KIPRWLG 454
                   L  L L  N   G   ++L+K       L+ L L NN +       +   L 
Sbjct: 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190

Query: 455 DLTRLQYIIMPNNHL--EGPIPVEFCQLDL--LQILDISDNNIS--GRLDLSCNKLIGPI 508
               L+ + + NN L  EG   +      L  L++L++ DNN++  G   L  + L+ P 
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL-ASALLSP- 248

Query: 509 PPKIGNLTRIQTLNLSHNDLTGSIPSTFS----NLKHVESLDLSNNKLN 553
                    + TL+LS ND+T       +      + +  LDL  NK  
Sbjct: 249 ------NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 20/267 (7%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
             +L +L L  NN TDI          +NL+ L L  +   I  L S     P+LKNL +
Sbjct: 115 LTNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNK--IESLPSPLRNLPNLKNLDL 170

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTN 123
           S  +++ L +     +  +L +LD+S  +I+     +    E + +L+ L LSN     N
Sbjct: 171 SFNDLSDLPKLLS--NLSNLNNLDLSGNKISDLPPEI----ELLSALEELDLSN-----N 219

Query: 124 SSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVH 183
           S   L   L +L +L  L +++N L       + N+++L  L +S NQ++   S S L  
Sbjct: 220 SIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQIS---SISSLGS 275

Query: 184 LTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN-FQLSRL 242
           LT++ +L LS N     + L  L       +          E+  +  L   N       
Sbjct: 276 LTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGET 335

Query: 243 SLSSSYGDGFIFPKFLYHQHDLEYADL 269
           S   +              + L+ ++L
Sbjct: 336 SSPEALSILESLNNLWTLDNALDESNL 362

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
            L  LD+SNN     IP      LP+L V ++S N L    P +F  +  LR LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 372 L 372
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	689
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03150	623	hypothetical protein; Provisional	99.45
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
PLN03150	623	hypothetical protein; Provisional	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG4341	483	consensus F-box protein containing LRR [General fu	98.42
KOG4341	483	consensus F-box protein containing LRR [General fu	98.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.09
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.37
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.64
KOG4308	478	consensus LRR-containing protein [Function unknown	95.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.16
KOG4308	478	consensus LRR-containing protein [Function unknown	93.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.48
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	92.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.4
smart00370	26	LRR Leucine-rich repeats, outliers.	90.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.21
smart00370	26	LRR Leucine-rich repeats, outliers.	90.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.48
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.45
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.07
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	86.23
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.12
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.38

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.3e-59  Score=541.39  Aligned_cols=542  Identities=30%  Similarity=0.474  Sum_probs=457.6

Q ss_pred             CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~   84 (689)
                      .+++.|||++|.+++  ..+..|..+++|++|+|++|.+++.....+...+++|++|++++|.+.+.++.   ..+++|+
T Consensus        69 ~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~  143 (968)
T PLN00113         69 SRVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLE  143 (968)
T ss_pred             CcEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCC
Confidence            467788888888877  56777888888888888888877552334443378888888888887766553   4567888


Q ss_pred             eeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCc
Q 040699           85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR  163 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  163 (689)
                      +|++++|.+  .+..+..+.. +++|++|++++| ..+.    +|. .++++++|++|+|++|.+++..|..++.+++|+
T Consensus       144 ~L~Ls~n~~--~~~~p~~~~~-l~~L~~L~L~~n~l~~~----~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        144 TLDLSNNML--SGEIPNDIGS-FSSLKVLDLGGNVLVGK----IPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             EEECcCCcc--cccCChHHhc-CCCCCEEECccCccccc----CCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            888888887  5566666665 888888888887 3444    554 678888888888888888877788888888888


Q ss_pred             EEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEe
Q 040699          164 ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLS  243 (689)
Q Consensus       164 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  243 (689)
                      +|++++|.+++.+|. .+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.+.                    
T Consensus       216 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~--------------------  273 (968)
T PLN00113        216 WIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLS--------------------  273 (968)
T ss_pred             EEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeee--------------------
Confidence            888888888766666 67888888888888887765443 45677777888877776553                    


Q ss_pred             ecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcC
Q 040699          244 LSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF  323 (689)
Q Consensus       244 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  323 (689)
                              +..|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       274 --------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        274 --------GPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             --------ccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence                    345566777889999999999999888876 47899999999999999988888899999999999999999


Q ss_pred             cccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcc
Q 040699          324 RGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFS  403 (689)
Q Consensus       324 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  403 (689)
                      .+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|.... .+++|+.|++++|.+.+..+.
T Consensus       345 ~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~  422 (968)
T PLN00113        345 SGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGELPS  422 (968)
T ss_pred             cCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCEeeeECCh
Confidence            8888876655 78999999999999988999999999999999999999977776654 499999999999999988888


Q ss_pred             cccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCC
Q 040699          404 RNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLL  483 (689)
Q Consensus       404 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  483 (689)
                      .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ +.++|+.|++++|++.+..|..+..+++|
T Consensus       423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  501 (968)
T PLN00113        423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL  501 (968)
T ss_pred             hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence            89999999999999999999888888899999999999999998888766 46899999999999999999999999999


Q ss_pred             cEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699          484 QILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  563 (689)
Q Consensus       484 ~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  563 (689)
                      ++|++++|.+.           +.+|..+.++++|++|++++|.+++.+|..|+.+++|+.|+|++|++++.+|..+..+
T Consensus       502 ~~L~Ls~N~l~-----------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        502 MQLKLSENKLS-----------GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             CEEECcCCcce-----------eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence            99999999876           4789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699          564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       564 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      ++|+.+++++|++.+.+|.. .++.++....+.|||..|+.+
T Consensus       571 ~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        571 ESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            99999999999999999975 467788888999999999743

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-54  Score=507.52  Aligned_cols=521  Identities=32%  Similarity=0.465  Sum_probs=448.1

Q ss_pred             CCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCC
Q 040699           30 FTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPS  109 (689)
Q Consensus        30 ~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~  109 (689)
                      ..+++.|+|+++.+++...+.+.. +++|++|++++|.+.+.++...+..+++|++|++++|.+  .+.++.   ..+++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l--~~~~p~---~~l~~  141 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF--TGSIPR---GSIPN  141 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc--ccccCc---cccCC
Confidence            357888888888887764345555 888999999988887777765566888899999988887  455554   23778


Q ss_pred             ccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCC
Q 040699          110 LKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE  188 (689)
Q Consensus       110 L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  188 (689)
                      |++|+|++| ..+.    ++. .++++++|++|++++|.+.+..|..++++++|++|++++|.+++.+|. .+..+++|+
T Consensus       142 L~~L~Ls~n~~~~~----~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~  215 (968)
T PLN00113        142 LETLDLSNNMLSGE----IPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLK  215 (968)
T ss_pred             CCEEECcCCccccc----CCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCcc
Confidence            889998888 3333    554 688888899999988888888888888888899999988888866776 688888888


Q ss_pred             EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEE
Q 040699          189 KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYAD  268 (689)
Q Consensus       189 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  268 (689)
                      +|++++|.+.+..+ ..+.++++|+.|++++|.+.                            +..|..+..+++|+.|+
T Consensus       216 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~----------------------------~~~p~~l~~l~~L~~L~  266 (968)
T PLN00113        216 WIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLT----------------------------GPIPSSLGNLKNLQYLF  266 (968)
T ss_pred             EEECcCCccCCcCC-hhHhcCCCCCEEECcCceec----------------------------cccChhHhCCCCCCEEE
Confidence            88888888775444 45677788888888777553                            34566677889999999


Q ss_pred             ccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcC
Q 040699          269 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNAL  348 (689)
Q Consensus       269 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  348 (689)
                      +++|.+.+..|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+
T Consensus       267 L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l  344 (968)
T PLN00113        267 LYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKF  344 (968)
T ss_pred             CcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCC
Confidence            99999998888774 78899999999999999888888899999999999999998777776554 89999999999999


Q ss_pred             CccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccccc
Q 040699          349 DGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQS  428 (689)
Q Consensus       349 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  428 (689)
                      .+..|..+..+++|+.|++++|++.+.+|..... +++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..
T Consensus       345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~  423 (968)
T PLN00113        345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE  423 (968)
T ss_pred             cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence            9889999999999999999999999888876654 889999999999999888888999999999999999999889999


Q ss_pred             ccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCC
Q 040699          429 LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPI  508 (689)
Q Consensus       429 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~  508 (689)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|+++           +..
T Consensus       424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~-----------~~~  491 (968)
T PLN00113        424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS-----------GAV  491 (968)
T ss_pred             HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC-----------Ccc
Confidence            9999999999999999999999888899999999999999998888766 4588999999888876           478


Q ss_pred             chhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCcccccc
Q 040699          509 PPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFA  588 (689)
Q Consensus       509 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  588 (689)
                      |..+.++++|+.|++++|++.+.+|..+.++++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  571 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE  571 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             ccCcccccCCcCCCCCCC
Q 040699          589 TFNENSYEGNTFLCGLPL  606 (689)
Q Consensus       589 ~~~~~~~~~n~~~c~~~~  606 (689)
                      .++.+++.+|++.+..|.
T Consensus       572 ~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        572 SLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ccCEEeccCCcceeeCCC
Confidence            999999999998876653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-43  Score=344.21  Aligned_cols=417  Identities=22%  Similarity=0.264  Sum_probs=309.1

Q ss_pred             CEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeecc
Q 040699          139 QELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYAD  218 (689)
Q Consensus       139 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  218 (689)
                      +.|++++|.+....+..|.++++|+.+++.+|.++ .+|. ......+++.|+|.+|.++. +.                
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~s-v~----------------  141 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISS-VT----------------  141 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeecccccc-cc----------------
Confidence            44666666666666666666666666666666666 5665 22223346666665555441 11                


Q ss_pred             CCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCC
Q 040699          219 NNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS  298 (689)
Q Consensus       219 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~  298 (689)
                                                          .+.+...+.|+.+|++.|.++ .+|...|..-.++++|+|+.|.
T Consensus       142 ------------------------------------se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~  184 (873)
T KOG4194|consen  142 ------------------------------------SEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNR  184 (873)
T ss_pred             ------------------------------------HHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccc
Confidence                                                122344567888899988887 5555545666788999999999


Q ss_pred             CCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchh
Q 040699          299 LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPE  378 (689)
Q Consensus       299 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  378 (689)
                      |+.+....|.++.+|..|.|+.|.++ .+|...|..+++|+.|+|..|.|.-.-.-+|.++++|+.|.+..|.+. .+..
T Consensus       185 It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~D  262 (873)
T KOG4194|consen  185 ITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDD  262 (873)
T ss_pred             ccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccC
Confidence            98888888888888888999999888 888888888888889998888887544567888888888888888887 8888


Q ss_pred             hhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCC
Q 040699          379 HLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTR  458 (689)
Q Consensus       379 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  458 (689)
                      ++|.++.++++|+|+.|++......++.++++|+.|+++.|.|..+-++.+..+++|++|+|++|+|+...+++|..+..
T Consensus       263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~  342 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ  342 (873)
T ss_pred             cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888777788888888


Q ss_pred             CcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccC
Q 040699          459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN  538 (689)
Q Consensus       459 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  538 (689)
                      |++|+|++|+++.+...+|..+++|++|||++|.++..+        ..-...|.++++|+.|++.+|++..+...+|.+
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I--------EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg  414 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI--------EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG  414 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE--------ecchhhhccchhhhheeecCceeeecchhhhcc
Confidence            888888888888777777888888888888888776311        012344777888888888888888777778888


Q ss_pred             CCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC-CccccccccCcccccCCcCCCCCCCCCCCCCCCCCc
Q 040699          539 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP-EWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSE  617 (689)
Q Consensus       539 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~  617 (689)
                      +..|++|||.+|.|..+.|++|..+ .|+.|.+..-.+.|.|. .|+.+|.      + ++... ......|+.|++..+
T Consensus       415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl------~-~~~lq-~sv~a~CayPe~Lad  485 (873)
T KOG4194|consen  415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL------Y-RRKLQ-SSVIAKCAYPEPLAD  485 (873)
T ss_pred             CcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH------H-hcccc-cceeeeccCCccccc
Confidence            8888888888888888888888777 77777777666666653 2333221      1 11111 111227888988888


Q ss_pred             ccCCCCCCCCccc
Q 040699          618 ASIGNERDDNLID  630 (689)
Q Consensus       618 ~~~~~~~~~~~~~  630 (689)
                      .++.+.+..++.|
T Consensus       486 ~~i~svd~~~lvC  498 (873)
T KOG4194|consen  486 QSIVSVDTANLVC  498 (873)
T ss_pred             ceeEeechhhcee
Confidence            8777777666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-41  Score=331.53  Aligned_cols=392  Identities=22%  Similarity=0.260  Sum_probs=322.9

Q ss_pred             CCeeeCCCCccccCCccc-hhh-hhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCC
Q 040699           83 LEHLDMSSTRIALNTSFL-QII-GESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMT  160 (689)
Q Consensus        83 L~~L~L~~~~~~~~~~~~-~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  160 (689)
                      -+.|+.+...+   ..+. ..+ +-..+.-+.|++++|....    +....|.++++|+++++.+|.++ .+|..-+...
T Consensus        54 ~~lldcs~~~l---ea~~~~~l~g~lp~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg  125 (873)
T KOG4194|consen   54 TRLLDCSDREL---EAIDKSRLKGFLPSQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG  125 (873)
T ss_pred             ceeeecCcccc---ccccccccCCcCccceeeeecccccccc----CcHHHHhcCCcceeeeeccchhh-hccccccccc
Confidence            35678888776   2211 111 1113456789999996555    55557899999999999999998 7787777777


Q ss_pred             CCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccc
Q 040699          161 SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS  240 (689)
Q Consensus       161 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  240 (689)
                      +|+.|+|.+|.|+ .+....++.++.|+.|||+.|.++ .++...+..-.++++|++++|                    
T Consensus       126 hl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N--------------------  183 (873)
T KOG4194|consen  126 HLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASN--------------------  183 (873)
T ss_pred             ceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccc--------------------
Confidence            8999999999998 777778899999999999999887 344333434444455554444                    


Q ss_pred             eEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccC
Q 040699          241 RLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISN  320 (689)
Q Consensus       241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  320 (689)
                                                      +++ .+....|..+.+|..|.|+.|+++...+..|.++++|+.|+|..
T Consensus       184 --------------------------------~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  184 --------------------------------RIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             --------------------------------ccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence                                            443 22233366778899999999999998888999999999999999


Q ss_pred             CcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCcc
Q 040699          321 NNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH  400 (689)
Q Consensus       321 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  400 (689)
                      |+|. .+..-.|.++++|+.|.+..|.+.....++|.++.++++|+|+.|++. .+.+....++.+|+.|++++|.|..+
T Consensus       231 N~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  231 NRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             ccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhhee
Confidence            9997 666667888999999999999999888889999999999999999998 77777666799999999999999999


Q ss_pred             CcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccC---Ccccc
Q 040699          401 MFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP---IPVEF  477 (689)
Q Consensus       401 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~  477 (689)
                      ....+..+++|+.|+|++|.++...++.|..+..|++|+|++|++......+|.++.+|+.|+|++|.++..   ....|
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF  388 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence            999999999999999999999988899999999999999999999977788999999999999999998753   34558


Q ss_pred             cCCCCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcC
Q 040699          478 CQLDLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL  552 (689)
Q Consensus       478 ~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  552 (689)
                      ..+++|+.|++.+|++.            .+| .+|.++++|+.|||.+|.|..+.|++|..+ .|+.|.+..-.+
T Consensus       389 ~gl~~LrkL~l~gNqlk------------~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGNQLK------------SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             ccchhhhheeecCceee------------ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            88999999999999987            444 579999999999999999999999999988 898888765443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-38  Score=300.47  Aligned_cols=477  Identities=23%  Similarity=0.330  Sum_probs=255.9

Q ss_pred             CCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCcc
Q 040699           32 NLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLK  111 (689)
Q Consensus        32 ~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~  111 (689)
                      .|..+.+++|.+... .+.+.. ++.+.+|++++|.+....+  +++.+..++.|+.++|++   .+++..++. +.+|+
T Consensus        46 ~l~~lils~N~l~~l-~~dl~n-L~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~l---s~lp~~i~s-~~~l~  117 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVL-REDLKN-LACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKL---SELPEQIGS-LISLV  117 (565)
T ss_pred             chhhhhhccCchhhc-cHhhhc-ccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchH---hhccHHHhh-hhhhh
Confidence            345555555554443 333444 5555555555555542221  445555555555555555   444555544 55555


Q ss_pred             EEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEe
Q 040699          112 YLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLY  191 (689)
Q Consensus       112 ~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  191 (689)
                      .++.++|....    +++ +++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|++. ..++..+. ++.|++||
T Consensus       118 ~l~~s~n~~~e----l~~-~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld  189 (565)
T KOG0472|consen  118 KLDCSSNELKE----LPD-SIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLD  189 (565)
T ss_pred             hhhccccceee----cCc-hHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcc
Confidence            55555552222    333 4555555555555555555 44555555555555555555555 44442222 55555555


Q ss_pred             ccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccC
Q 040699          192 LSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSH  271 (689)
Q Consensus       192 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  271 (689)
                      ...|.+. .++ ..++.+.+|..|++..|.+.                             ..| .+..|..|..++++.
T Consensus       190 ~~~N~L~-tlP-~~lg~l~~L~~LyL~~Nki~-----------------------------~lP-ef~gcs~L~Elh~g~  237 (565)
T KOG0472|consen  190 CNSNLLE-TLP-PELGGLESLELLYLRRNKIR-----------------------------FLP-EFPGCSLLKELHVGE  237 (565)
T ss_pred             cchhhhh-cCC-hhhcchhhhHHHHhhhcccc-----------------------------cCC-CCCccHHHHHHHhcc
Confidence            5555443 122 23444455555555544332                             111 233344444455554


Q ss_pred             CcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCcc
Q 040699          272 IKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS  351 (689)
Q Consensus       272 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  351 (689)
                      |.+. .+|+....+++++..||+++|+++. .|..+.-+.+|+.||+++|.++ ..|...+. + .|+.|.+.+|.+..+
T Consensus       238 N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  238 NQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTI  312 (565)
T ss_pred             cHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHH
Confidence            4443 4444444444555555555554443 2333334444444555555444 34443333 2 444444444444311


Q ss_pred             ccccccCCC--CCcEE-------eccCCc----ccccchhhhh---cCCCCCCEEEccCCcCCccCcccccC--CCCccE
Q 040699          352 IPSSFGNMN--FLRIL-------DLSNNQ----LTGEIPEHLA---VGCVNLESLVLSNNSLKGHMFSRNFN--LANLMS  413 (689)
Q Consensus       352 ~~~~~~~l~--~L~~L-------~l~~n~----l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~  413 (689)
                      -.+.+.+-+  -|++|       .++...    -.+..+...|   ....+.+.|++++-+++.++.+.|..  -.-...
T Consensus       313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~  392 (565)
T KOG0472|consen  313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS  392 (565)
T ss_pred             HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence            000000000  00000       000000    0000000000   11335566666666666655554432  223667


Q ss_pred             EeccCCcccccccccccCCCCCCE-EECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699          414 LQLEGNHFIGEISQSLSKCSSLEG-LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  492 (689)
Q Consensus       414 L~L~~n~~~~~~~~~~~~l~~L~~-L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  492 (689)
                      .++++|++. .+|..+..+..+.+ +.+++|.+. .+|..+..+++|..|++++|.+. .+|..+..+..|+.|+++.|+
T Consensus       393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr  469 (565)
T KOG0472|consen  393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR  469 (565)
T ss_pred             EecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc
Confidence            777777765 45555555554443 445555554 66777777888888888888776 567777777778888888887


Q ss_pred             cccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEecc
Q 040699          493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  572 (689)
Q Consensus       493 ~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  572 (689)
                      +.            .+|+.+..+..++.+-.++|++..+.|+.+.++.+|..|||.+|.+. .+|..++++++|++|++.
T Consensus       470 Fr------------~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  470 FR------------MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELD  536 (565)
T ss_pred             cc------------cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEec
Confidence            76            67888777777888877888888777777888888888888888887 567778888888888888


Q ss_pred             CCcCc
Q 040699          573 YNNLS  577 (689)
Q Consensus       573 ~N~l~  577 (689)
                      ||||.
T Consensus       537 gNpfr  541 (565)
T KOG0472|consen  537 GNPFR  541 (565)
T ss_pred             CCccC
Confidence            88887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.2e-38  Score=296.52  Aligned_cols=476  Identities=26%  Similarity=0.340  Sum_probs=375.2

Q ss_pred             CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~   84 (689)
                      .-++.+++++|.+..   +.+++.++..|.+|++++|+++.. .+++.+ +..++.++.++|.+.. ++. .+..+.+|+
T Consensus        45 v~l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~-l~~l~~l~vs~n~ls~-lp~-~i~s~~~l~  117 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQL-PAAIGE-LEALKSLNVSHNKLSE-LPE-QIGSLISLV  117 (565)
T ss_pred             cchhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhC-CHHHHH-HHHHHHhhcccchHhh-ccH-HHhhhhhhh
Confidence            457789999998877   456789999999999999999875 667777 8999999999999874 443 678889999


Q ss_pred             eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcE
Q 040699           85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRI  164 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  164 (689)
                      .|+.++|.+   .+.+..++. +-.|..++..+|.+..    +|+ ++.++.+|..+++.+|++....|. .-.++.|++
T Consensus       118 ~l~~s~n~~---~el~~~i~~-~~~l~dl~~~~N~i~s----lp~-~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~  187 (565)
T KOG0472|consen  118 KLDCSSNEL---KELPDSIGR-LLDLEDLDATNNQISS----LPE-DMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKH  187 (565)
T ss_pred             hhhccccce---eecCchHHH-Hhhhhhhhcccccccc----Cch-HHHHHHHHHHhhccccchhhCCHH-HHHHHHHHh
Confidence            999999998   778888888 8899999999886655    776 899999999999999999954444 444999999


Q ss_pred             EEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEee
Q 040699          165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSL  244 (689)
Q Consensus       165 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  244 (689)
                      ||...|.+. .+|+ .++.+.+|+.|++..|.+.. .+  .|.+++.|++++++.|.+...                   
T Consensus       188 ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~g~N~i~~l-------------------  243 (565)
T KOG0472|consen  188 LDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHVGENQIEML-------------------  243 (565)
T ss_pred             cccchhhhh-cCCh-hhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHhcccHHHhh-------------------
Confidence            999999997 8998 79999999999999999883 33  678899999999999877532                   


Q ss_pred             cccCCCCCCCCcc-ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcC
Q 040699          245 SSSYGDGFIFPKF-LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF  323 (689)
Q Consensus       245 ~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  323 (689)
                                |.. ...+.++..||+.+|++. ++|..+ ..+.+|+.||+++|.+++ .|..++++ .|+.|.+.+|.+
T Consensus       244 ----------pae~~~~L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  244 ----------PAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ----------HHHHhcccccceeeeccccccc-cCchHH-HHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence                      222 236778999999999998 677764 577899999999999997 45678888 899999999988


Q ss_pred             cccCChhhhhc-----CCCceEE----EccCCcCC----cc-cc---ccccCCCCCcEEeccCCcccccchhhhhcCCC-
Q 040699          324 RGHIPLEIGDI-----LPSLHVF----NISMNALD----GS-IP---SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCV-  385 (689)
Q Consensus       324 ~~~~~~~~~~~-----~~~L~~L----~l~~n~l~----~~-~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-  385 (689)
                      . .+..++..+     ++.|+.-    -++...-+    .. .+   .....+.+.+.|++++-+++ .+|..+|..-. 
T Consensus       310 r-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~  387 (565)
T KOG0472|consen  310 R-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS  387 (565)
T ss_pred             H-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh
Confidence            6 343333221     1222220    01111000    00 11   12234567899999999998 99999987332 


Q ss_pred             -CCCEEEccCCcCCccCcccccCCCCccE-EeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEE
Q 040699          386 -NLESLVLSNNSLKGHMFSRNFNLANLMS-LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII  463 (689)
Q Consensus       386 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  463 (689)
                       -....++++|++.+.+ ..+..+..+.+ +.+++|. .+.+|..++.+++|..|++++|.+. .+|..++++..|+.|+
T Consensus       388 ~~Vt~VnfskNqL~elP-k~L~~lkelvT~l~lsnn~-isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Ln  464 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLCELP-KRLVELKELVTDLVLSNNK-ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLN  464 (565)
T ss_pred             cceEEEecccchHhhhh-hhhHHHHHHHHHHHhhcCc-cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheec
Confidence             2778999999998644 33444444443 4555555 4567888899999999999999887 7898899999999999


Q ss_pred             cCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCC
Q 040699          464 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVE  543 (689)
Q Consensus       464 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  543 (689)
                      ++.|++. ..|.....+..++.+-.++|++..           ..|..+.+|.+|.+|||.+|.+. .+|+.++++++|+
T Consensus       465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~-----------vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  465 LSFNRFR-MLPECLYELQTLETLLASNNQIGS-----------VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR  531 (565)
T ss_pred             ccccccc-cchHHHhhHHHHHHHHhccccccc-----------cChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence            9999998 788888888888888888888762           34445999999999999999998 7888999999999


Q ss_pred             EEeCcCCcCC
Q 040699          544 SLDLSNNKLN  553 (689)
Q Consensus       544 ~L~L~~N~l~  553 (689)
                      +|.+.+|++.
T Consensus       532 hLeL~gNpfr  541 (565)
T KOG0472|consen  532 HLELDGNPFR  541 (565)
T ss_pred             EEEecCCccC
Confidence            9999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-34  Score=300.00  Aligned_cols=484  Identities=23%  Similarity=0.261  Sum_probs=299.2

Q ss_pred             EeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCC
Q 040699           10 LYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMS   89 (689)
Q Consensus        10 L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~   89 (689)
                      +|+|..++..   +|..+.....+..|++..|.+-...++.+.+ .-+|+.|++++|++... |. .+..+.+|+.|+++
T Consensus         3 vd~s~~~l~~---ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~s   76 (1081)
T KOG0618|consen    3 VDASDEQLEL---IPEQILNNEALQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNLS   76 (1081)
T ss_pred             cccccccCcc---cchhhccHHHHHhhhccccccccCchHHhhh-eeeeEEeeccccccccC-Cc-hhhhHHHHhhcccc
Confidence            5666665554   5766766677888888887665543444444 34488888888877633 22 45667778888888


Q ss_pred             CCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccc
Q 040699           90 STRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSY  169 (689)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  169 (689)
                      .|.|   ...+..... +.+|+++.|.+|....    +|. .+..+.+|++|++++|.+. .+|..+..++.+..+..++
T Consensus        77 ~n~i---~~vp~s~~~-~~~l~~lnL~~n~l~~----lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~  146 (1081)
T KOG0618|consen   77 RNYI---RSVPSSCSN-MRNLQYLNLKNNRLQS----LPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASN  146 (1081)
T ss_pred             hhhH---hhCchhhhh-hhcchhheeccchhhc----Cch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhc
Confidence            8777   444444444 7777777777774444    554 6777777777777777776 5666777777777777777


Q ss_pred             eeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCC
Q 040699          170 NQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYG  249 (689)
Q Consensus       170 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  249 (689)
                      |.-...++.     .. ++.+++..|.+...+. .....+..  .+++.+|.+..                         
T Consensus       147 N~~~~~lg~-----~~-ik~~~l~~n~l~~~~~-~~i~~l~~--~ldLr~N~~~~-------------------------  192 (1081)
T KOG0618|consen  147 NEKIQRLGQ-----TS-IKKLDLRLNVLGGSFL-IDIYNLTH--QLDLRYNEMEV-------------------------  192 (1081)
T ss_pred             chhhhhhcc-----cc-chhhhhhhhhcccchh-cchhhhhe--eeecccchhhh-------------------------
Confidence            721112222     11 5666666665543322 12222222  46666665431                         


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCCh
Q 040699          250 DGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPL  329 (689)
Q Consensus       250 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  329 (689)
                            ..+..+.+|+.+....|.+...     -..-++++.|+..+|.++.....  ....+|+++++++|+++ .+|.
T Consensus       193 ------~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~  258 (1081)
T KOG0618|consen  193 ------LDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPE  258 (1081)
T ss_pred             ------hhhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchH
Confidence                  1122344555555555544311     11335666666666666632221  12246777777777776 6665


Q ss_pred             hhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCC
Q 040699          330 EIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLA  409 (689)
Q Consensus       330 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  409 (689)
                      ++.. +.+|+.+...+|.++ ..|..+...++|+.|.+..|.+. .+|..... +..|++|+|..|.+.......+.-..
T Consensus       259 wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~  334 (1081)
T KOG0618|consen  259 WIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLN  334 (1081)
T ss_pred             HHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhh
Confidence            5544 667777777777774 45666666677777777777776 66655443 66777777777777655544443333


Q ss_pred             C-ccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEec
Q 040699          410 N-LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDI  488 (689)
Q Consensus       410 ~-L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  488 (689)
                      . |..|+.+.|++.......=...+.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++.......+.+++.|++|++
T Consensus       335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence            3 566666666654332222223456777777777777666666777777777888877777555566777777777777


Q ss_pred             cccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCE
Q 040699          489 SDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  568 (689)
Q Consensus       489 ~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  568 (689)
                      |+|.++            .+|+.+..++.|++|...+|++. ..| .+.+++.|+.+|++.|+++...-..-.+.++|++
T Consensus       415 SGNkL~------------~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky  480 (1081)
T KOG0618|consen  415 SGNKLT------------TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY  480 (1081)
T ss_pred             ccchhh------------hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence            777776            56777777777777777777776 455 5677777777777777777543222223367777


Q ss_pred             EeccCCc
Q 040699          569 FSVAYNN  575 (689)
Q Consensus       569 L~l~~N~  575 (689)
                      ||++||.
T Consensus       481 LdlSGN~  487 (1081)
T KOG0618|consen  481 LDLSGNT  487 (1081)
T ss_pred             eeccCCc
Confidence            7777775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-33  Score=293.12  Aligned_cols=487  Identities=24%  Similarity=0.285  Sum_probs=288.5

Q ss_pred             CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCee
Q 040699            7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL   86 (689)
Q Consensus         7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L   86 (689)
                      +..|+++.|.+-.. . .+....+-+|+.|++++|.++.... .+.. +++|+.|.++.|.+... + ....++++|++|
T Consensus        23 ~~~ln~~~N~~l~~-p-l~~~~~~v~L~~l~lsnn~~~~fp~-~it~-l~~L~~ln~s~n~i~~v-p-~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSR-P-LEFVEKRVKLKSLDLSNNQISSFPI-QITL-LSHLRQLNLSRNYIRSV-P-SSCSNMRNLQYL   96 (1081)
T ss_pred             HHhhhccccccccC-c-hHHhhheeeeEEeeccccccccCCc-hhhh-HHHHhhcccchhhHhhC-c-hhhhhhhcchhh
Confidence            45566666654441 1 2333445557777777776665311 3333 56677777777776533 2 256667777777


Q ss_pred             eCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEE
Q 040699           87 DMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILY  166 (689)
Q Consensus        87 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  166 (689)
                      .|.+|.+   ...|..+.+ +.+|++|++|.|..+.    +|. .+..+..++.+..++|.-....+..     .++.++
T Consensus        97 nL~~n~l---~~lP~~~~~-lknl~~LdlS~N~f~~----~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~-----~ik~~~  162 (1081)
T KOG0618|consen   97 NLKNNRL---QSLPASISE-LKNLQYLDLSFNHFGP----IPL-VIEVLTAEEELAASNNEKIQRLGQT-----SIKKLD  162 (1081)
T ss_pred             eeccchh---hcCchhHHh-hhcccccccchhccCC----Cch-hHHhhhHHHHHhhhcchhhhhhccc-----cchhhh
Confidence            7777765   555666665 6777777777774444    554 5666666667777776222122221     166666


Q ss_pred             ccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecc
Q 040699          167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSS  246 (689)
Q Consensus       167 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~  246 (689)
                      +..|.+.+.+.. .+..+..  .|++++|.+. .   ..+..+.+|+.+....|.+.                 .+.+  
T Consensus       163 l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls-----------------~l~~--  216 (1081)
T KOG0618|consen  163 LRLNVLGGSFLI-DIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLS-----------------ELEI--  216 (1081)
T ss_pred             hhhhhcccchhc-chhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccc-----------------eEEe--
Confidence            666666655554 4444444  5777777654 1   23445555665555555332                 1211  


Q ss_pred             cCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCccc
Q 040699          247 SYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGH  326 (689)
Q Consensus       247 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  326 (689)
                                   ..++++.|+.+.|.+....+.   ..-.++++++++.+.+.+.. .+...+.+|+.++..+|.++ .
T Consensus       217 -------------~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~  278 (1081)
T KOG0618|consen  217 -------------SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-A  278 (1081)
T ss_pred             -------------cCcchheeeeccCcceeeccc---cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-h
Confidence                         123445555555544421111   12345566666666665533 55556666666666666665 5


Q ss_pred             CChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCC-CCEEEccCCcCCccCcccc
Q 040699          327 IPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVN-LESLVLSNNSLKGHMFSRN  405 (689)
Q Consensus       327 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~  405 (689)
                      +|...+. ..+|+.|....|.+. -+|....++..|++|++..|++. .+|...+.-... |+.+..+.|.+.......-
T Consensus       279 lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e  355 (1081)
T KOG0618|consen  279 LPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE  355 (1081)
T ss_pred             hHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence            6655554 456666666666665 34455566667777777777765 666655543333 5666666666655443333


Q ss_pred             cCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699          406 FNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI  485 (689)
Q Consensus       406 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  485 (689)
                      ...+.|+.|++.+|.++...-..+.+.+.|++|+|++|++.......+..++.|+.|++++|+++ .+|.+...++.|++
T Consensus       356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT  434 (1081)
T ss_pred             hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence            44666777777777777666666777777777777777776444455666777777777777777 45577777777777


Q ss_pred             EeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCC
Q 040699          486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT  565 (689)
Q Consensus       486 L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  565 (689)
                      |..-+|++.            ..| .+..++.|+.+|++.|+++...-..-..-++|++|||++|.-.......|..+..
T Consensus       435 L~ahsN~l~------------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~  501 (1081)
T KOG0618|consen  435 LRAHSNQLL------------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKS  501 (1081)
T ss_pred             HhhcCCcee------------ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhh
Confidence            777777765            455 5667777777777777776433222222267777777777754444455555566


Q ss_pred             CCEEeccCC
Q 040699          566 LEVFSVAYN  574 (689)
Q Consensus       566 L~~L~l~~N  574 (689)
                      +...++.-|
T Consensus       502 l~~~~i~~~  510 (1081)
T KOG0618|consen  502 LSQMDITLN  510 (1081)
T ss_pred             hhheecccC
Confidence            666665555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.8e-32  Score=271.21  Aligned_cols=343  Identities=27%  Similarity=0.363  Sum_probs=294.5

Q ss_pred             CCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcc-cCChh
Q 040699          252 FIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRG-HIPLE  330 (689)
Q Consensus       252 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~  330 (689)
                      +.+|.....++.++.|.+.+..+. .+|+.+ +.+.+|++|.+.+|++..+. ..+..++.|+.+.+.+|++.. -||.+
T Consensus        22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~d   98 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTD   98 (1255)
T ss_pred             CcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCch
Confidence            567888888899999999888876 677774 88899999999999887654 356778899999999998764 47888


Q ss_pred             hhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCC
Q 040699          331 IGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN  410 (689)
Q Consensus       331 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  410 (689)
                      +|. +..|+.|++++|.+. ..|..+....++-.|++|+|+|. .||..+|.++..|-.|+|++|++...+| .+..+..
T Consensus        99 iF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~  174 (1255)
T KOG0444|consen   99 IFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSM  174 (1255)
T ss_pred             hcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhh
Confidence            887 788999999999988 57788888889999999999998 9999999889999999999999876544 4567889


Q ss_pred             ccEEeccCCcccccccccccCCCCCCEEECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecc
Q 040699          411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS  489 (689)
Q Consensus       411 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  489 (689)
                      |++|.|++|++....-..+..+++|++|.+++.+-+ ..+|.++.++.+|..++++.|.+. ..|+++..+++|+.|+||
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS  253 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS  253 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence            999999999886555566778889999999987544 467888999999999999999988 789999999999999999


Q ss_pred             ccccccc------------cccCCCcccCCCchhhccccccceEeccCccccc-CCcccccCCCCCCEEeCcCCcCCCCC
Q 040699          490 DNNISGR------------LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNGKI  556 (689)
Q Consensus       490 ~n~~~~~------------l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~  556 (689)
                      +|.++.-            |++|+|+++ ..|.++..++.|+.|.+.+|+++. -+|+.++.+..|+.+..++|.+. ..
T Consensus       254 ~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lV  331 (1255)
T KOG0444|consen  254 GNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LV  331 (1255)
T ss_pred             cCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cC
Confidence            9998752            889999998 789999999999999999999863 47899999999999999999998 88


Q ss_pred             chhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699          557 PHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       557 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      |+++..+..|+.|.|+.|++. +.|+.+-.+..+..+++..||-+--.|
T Consensus       332 PEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  332 PEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             chhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            999999999999999999998 788888788899999999999776544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.5e-31  Score=266.17  Aligned_cols=251  Identities=30%  Similarity=0.380  Sum_probs=148.1

Q ss_pred             ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC
Q 040699          258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS  337 (689)
Q Consensus       258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  337 (689)
                      +..-+++-+|++++|.+. .+|..+|.+++.|-.|++++|++.. .|.....+..|++|++++|.+.. ..-.-...+++
T Consensus       122 LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmts  198 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTS  198 (1255)
T ss_pred             hhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchh
Confidence            334455556666666665 5666666677777777777776664 34455666677777777776541 11111112455


Q ss_pred             ceEEEccCCcCC-ccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699          338 LHVFNISMNALD-GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL  416 (689)
Q Consensus       338 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  416 (689)
                      |+.|.+++.+-+ ..+|.++.++.+|..+|+|.|.+. .+|++++. +++|+.|+|++|.++... ...+...+|++|++
T Consensus       199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITELN-MTEGEWENLETLNL  275 (1255)
T ss_pred             hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceeeee-ccHHHHhhhhhhcc
Confidence            666666665432 346667777777777777777776 77777765 777777777777766422 22334455666666


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699          417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  495 (689)
Q Consensus       417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  495 (689)
                      +.|+++ .+|..+..++.|+.|.+.+|+++ ..+|+.++.+.+|+.+...+|.+. ..|..++.|+.|+.|.|+.|++. 
T Consensus       276 SrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-  352 (1255)
T KOG0444|consen  276 SRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-  352 (1255)
T ss_pred             ccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-
Confidence            666654 44555666666666666666554 334555555555555555555554 55555555555555555555544 


Q ss_pred             ccccCCCcccCCCchhhccccccceEeccCccc
Q 040699          496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDL  528 (689)
Q Consensus       496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  528 (689)
                                 ..|+++.-++.|+.||+..|.-
T Consensus       353 -----------TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  353 -----------TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             -----------echhhhhhcCCcceeeccCCcC
Confidence                       4555555555555555555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=3.1e-28  Score=230.37  Aligned_cols=300  Identities=20%  Similarity=0.209  Sum_probs=242.9

Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccC-CcccccchhhhhcCCCCCCE
Q 040699          311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSN-NQLTGEIPEHLAVGCVNLES  389 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~  389 (689)
                      +.-..++|..|+|+ .+|+..|..+++|+.|+|++|.|+.+.|++|.++.++..|-+.+ |+|+ .+|...|.++.+|+.
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            45678999999998 89999999999999999999999999999999999998887766 8998 999999999999999


Q ss_pred             EEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC------------CcCChhhcCCC
Q 040699          390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS------------GKIPRWLGDLT  457 (689)
Q Consensus       390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~------------~~~~~~l~~l~  457 (689)
                      |.+.-|++..+....|..+++|..|.+.+|.+..+....|..+.+++.+.+..|.+.            ...|..+++..
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            999999999988899999999999999999987666668999999999999988732            23444556666


Q ss_pred             CCcEEEcCCCccccCCcccccCC-CCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCcccccCCccc
Q 040699          458 RLQYIIMPNNHLEGPIPVEFCQL-DLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSIPST  535 (689)
Q Consensus       458 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~  535 (689)
                      ...-..+.+.++..+.+..|... .++..--.+.+..           .+..| ..|..+++|++|+|++|+++++-+.+
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~-----------d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP-----------DSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc-----------CCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence            66666666666655444444321 1221111112211           11334 45899999999999999999999999


Q ss_pred             ccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCC--------
Q 040699          536 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP--------  607 (689)
Q Consensus       536 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~--------  607 (689)
                      |.++..+++|+|..|+|.......|..+..|+.|+|.+|++++..|..+.....+..+.+-+|||.|+|.+.        
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence            999999999999999999888888999999999999999999999998888888899999999999998654        


Q ss_pred             -------CCCCCCCCCcccCCCC
Q 040699          608 -------ICRSPATMSEASIGNE  623 (689)
Q Consensus       608 -------~c~~~~~~~~~~~~~~  623 (689)
                             .|++|...++.++.+.
T Consensus       374 ~~~~~~~~Cq~p~~~~~~~~~dv  396 (498)
T KOG4237|consen  374 KSVVGNPRCQSPGFVRQIPISDV  396 (498)
T ss_pred             CCCCCCCCCCCCchhccccchhc
Confidence                   6988877766655443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=9.9e-27  Score=220.22  Aligned_cols=389  Identities=21%  Similarity=0.235  Sum_probs=201.4

Q ss_pred             CccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccc-eeeeeecCcccccCCCCC
Q 040699          109 SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSY-NQLTGSISSSPLVHLTSI  187 (689)
Q Consensus       109 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L  187 (689)
                      .-..++|..|.+..    +|+++|..+++|+.|||++|.|+.+.|++|.++.+|..|.+.+ |+|+ .++.+.|.++..+
T Consensus        68 ~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            34455555554444    6666666666666666666666666666666666655554444 5665 5665566666666


Q ss_pred             CEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEE
Q 040699          188 EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYA  267 (689)
Q Consensus       188 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  267 (689)
                      +.|.+.-|.+.. +....+..++                                                    ++..|
T Consensus       143 qrLllNan~i~C-ir~~al~dL~----------------------------------------------------~l~lL  169 (498)
T KOG4237|consen  143 QRLLLNANHINC-IRQDALRDLP----------------------------------------------------SLSLL  169 (498)
T ss_pred             HHHhcChhhhcc-hhHHHHHHhh----------------------------------------------------hcchh
Confidence            655555554442 1112333333                                                    33334


Q ss_pred             EccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCC------------CCCCCCCCCCCcCEEEccCCcCcccCChhhhh-c
Q 040699          268 DLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAG------------PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGD-I  334 (689)
Q Consensus       268 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~  334 (689)
                      .+.+|.+. .++...|..+..++.+.+..|.+..            ..+..+++........+.+.++. .++..-+. .
T Consensus       170 slyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~  247 (498)
T KOG4237|consen  170 SLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCS  247 (498)
T ss_pred             cccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhh
Confidence            44444333 2333234455566666666655221            11222333333333444444444 33322222 1


Q ss_pred             CCCce-EEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccE
Q 040699          335 LPSLH-VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMS  413 (689)
Q Consensus       335 ~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  413 (689)
                      ...+. .+.-..+.........|..+++|++|++++|+++ .+.+..|.+..++++|.|..|++..+....|.++..|++
T Consensus       248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t  326 (498)
T KOG4237|consen  248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT  326 (498)
T ss_pred             HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence            11111 1122222222222335667777777777777776 667777777777777777777777666667777777777


Q ss_pred             EeccCCcccccccccccCCCCCCEEECCCCCCCC-cCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699          414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG-KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  492 (689)
Q Consensus       414 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  492 (689)
                      |+|++|+|+...|.+|..+.+|.+|++-.|++.- ---.|++.       .|.+.+..+..|  -+....++.+++++..
T Consensus       327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~  397 (498)
T KOG4237|consen  327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVGNPR--CQSPGFVRQIPISDVA  397 (498)
T ss_pred             eeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCCCCC--CCCCchhccccchhcc
Confidence            7777777777777777777777777776665430 00011110       000001001100  0112233444444433


Q ss_pred             cccc--------------------------cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699          493 ISGR--------------------------LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD  546 (689)
Q Consensus       493 ~~~~--------------------------l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  546 (689)
                      +...                          ...|.+.+. .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .++
T Consensus       398 ~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~d  470 (498)
T KOG4237|consen  398 FGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLD  470 (498)
T ss_pred             ccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcc
Confidence            3211                          223333332 3333222  24556778888887 44444  45667 788


Q ss_pred             CcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699          547 LSNNKLNGKIPHQLVELKTLEVFSVAYN  574 (689)
Q Consensus       547 L~~N~l~~~~~~~~~~l~~L~~L~l~~N  574 (689)
                      +++|+|+......|.+++.|.+|-+++|
T Consensus       471 ls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  471 LSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccCceehhhcccccchhhhheeEEecC
Confidence            8888887666667777788888877765

>PLN03210 Resistant to P

Probab=99.89  E-value=1.2e-21  Score=229.30  Aligned_cols=347  Identities=18%  Similarity=0.188  Sum_probs=159.0

Q ss_pred             ccccCCCCCCCEEeCCCCcC------ccCCCccccCCC-CCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeec
Q 040699          129 DQGLCSLMHLQELYMADNDL------RGSLPWCLANMT-SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI  201 (689)
Q Consensus       129 ~~~l~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  201 (689)
                      ..+|.++++|+.|.+..+..      ....|..|..++ +|+.|++.++.+. .+|. .| ...+|+.|++.+|.+.. .
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~-L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK-L  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-c
Confidence            34566666777766654422      223455555543 4666666666665 5555 23 34566666666665542 1


Q ss_pred             CcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChH
Q 040699          202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW  281 (689)
Q Consensus       202 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  281 (689)
                      + ..+..+++|+.++++++...                            ..+| .+..+++|+.|++++|.....+|..
T Consensus       627 ~-~~~~~l~~Lk~L~Ls~~~~l----------------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        627 W-DGVHSLTGLRNIDLRGSKNL----------------------------KEIP-DLSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             c-cccccCCCCCEEECCCCCCc----------------------------CcCC-ccccCCcccEEEecCCCCccccchh
Confidence            1 22334455555555443211                            1111 1334455666666655544455544


Q ss_pred             HHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCC
Q 040699          282 LLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNF  361 (689)
Q Consensus       282 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  361 (689)
                       +..+++|+.|++++|..-...|..+ ++++|+.|++++|.....+|.    ..++|+.|++++|.+. .+|..+ .+++
T Consensus       677 -i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~  748 (1153)
T PLN03210        677 -IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLEN  748 (1153)
T ss_pred             -hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccc
Confidence             2455555555555543222223222 345555555555533222221    1234455555554443 223222 2344


Q ss_pred             CcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699          362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN  441 (689)
Q Consensus       362 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  441 (689)
                      |+.|.+.++... .+..                 .+....+..+...++|+.|++++|.....+|..+..+++|+.|+++
T Consensus       749 L~~L~l~~~~~~-~l~~-----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls  810 (1153)
T PLN03210        749 LDELILCEMKSE-KLWE-----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE  810 (1153)
T ss_pred             cccccccccchh-hccc-----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence            444444432211 0000                 0000011111223455555555555444455555555555555555


Q ss_pred             CCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceE
Q 040699          442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTL  521 (689)
Q Consensus       442 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L  521 (689)
                      +|...+.+|... .+++|+.|++++|......|..   .++|++|++++|.++            .+|..+..+++|+.|
T Consensus       811 ~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~------------~iP~si~~l~~L~~L  874 (1153)
T PLN03210        811 NCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE------------EVPWWIEKFSNLSFL  874 (1153)
T ss_pred             CCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc------------cChHHHhcCCCCCEE
Confidence            553333444433 4555555555555332222221   234555555555544            445555555555555


Q ss_pred             eccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699          522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       522 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  551 (689)
                      ++++|+-...+|..+..+++|+.+++++|.
T Consensus       875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        875 DMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            555533222344444555555555555553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=1.4e-20  Score=220.17  Aligned_cols=287  Identities=20%  Similarity=0.213  Sum_probs=181.4

Q ss_pred             CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699          262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF  341 (689)
Q Consensus       262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  341 (689)
                      .+|+.|++.++.+. .++.. ...+++|+.++++++......| .+..+++|++|++++|.....+|..+.. +++|+.|
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~-L~~L~~L  686 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQY-LNKLEDL  686 (1153)
T ss_pred             cCCcEEECcCcccc-ccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhc-cCCCCEE
Confidence            34444444444443 22222 1344555555555443222222 2444555666666555433345544332 5566666


Q ss_pred             EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699          342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF  421 (689)
Q Consensus       342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  421 (689)
                      ++++|...+.+|..+ ++++|+.|++++|.....+|..    ..+|++|++++|.+...+. .+ .+++|+.|.+.++..
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~-~~-~l~~L~~L~l~~~~~  759 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPS-NL-RLENLDELILCEMKS  759 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccc-cc-cccccccccccccch
Confidence            666554333444433 4566666666666544344421    3456666666666554322 11 456666666655332


Q ss_pred             -------cccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699          422 -------IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       422 -------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  494 (689)
                             ....+..+..+++|+.|++++|.....+|.+++++++|+.|++++|...+.+|... .+++|+.|++++|...
T Consensus       760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL  838 (1153)
T ss_pred             hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence                   11122233446799999999998877899999999999999999986544666665 7899999999998643


Q ss_pred             cccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699          495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  574 (689)
Q Consensus       495 ~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  574 (689)
                      .           .+|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus       839 ~-----------~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        839 R-----------TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             c-----------ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            1           33332   368999999999998 67888999999999999996544467777888999999999998


Q ss_pred             c
Q 040699          575 N  575 (689)
Q Consensus       575 ~  575 (689)
                      .
T Consensus       904 ~  904 (1153)
T PLN03210        904 G  904 (1153)
T ss_pred             c
Confidence            5

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.8e-20  Score=201.42  Aligned_cols=265  Identities=23%  Similarity=0.292  Sum_probs=206.2

Q ss_pred             CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699          262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF  341 (689)
Q Consensus       262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  341 (689)
                      ..-..|+++.+.++ .+|..+.   ++++.|++.+|.++.+..    ..++|++|++++|+++ .+|..    .++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL----PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc----cccccee
Confidence            44668899999888 6776542   478999999999887432    3578999999999998 67742    4689999


Q ss_pred             EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699          342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF  421 (689)
Q Consensus       342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  421 (689)
                      ++.+|.+.. +|..   .++|+.|++++|+++ .+|..    .++|+.|++++|.+.++..    ...+|+.|++++|.+
T Consensus       268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL  334 (788)
T ss_pred             eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCccccCCC----CcccccccccccCcc
Confidence            999998874 4443   357889999999998 77752    5789999999999987543    235688999999998


Q ss_pred             cccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCC
Q 040699          422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSC  501 (689)
Q Consensus       422 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~  501 (689)
                      .+ +|..   ..+|+.|++++|++.+ +|..   ..+|+.|++++|++.. +|..   ..+|+.|++++|.++       
T Consensus       335 ~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-------  395 (788)
T PRK15387        335 TS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-------  395 (788)
T ss_pred             cc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-------
Confidence            75 3431   2489999999999984 5542   3678899999999985 4543   357899999998876       


Q ss_pred             CcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                           .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..|
T Consensus       396 -----~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        396 -----SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             -----CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence                 34543   3579999999999985 5543   357889999999998 678889999999999999999998777


Q ss_pred             Ccc
Q 040699          582 EWE  584 (689)
Q Consensus       582 ~~~  584 (689)
                      ..+
T Consensus       463 ~~L  465 (788)
T PRK15387        463 QAL  465 (788)
T ss_pred             HHH
Confidence            644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=6.3e-19  Score=191.03  Aligned_cols=264  Identities=24%  Similarity=0.294  Sum_probs=202.1

Q ss_pred             ceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEcc
Q 040699          240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDIS  319 (689)
Q Consensus       240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  319 (689)
                      ..|++ +.+++. .+|..+.  ++++.|++.+|.+. .+|.    ..++|++|++++|.++.+..    ..++|+.|+++
T Consensus       204 ~~LdL-s~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls  270 (788)
T PRK15387        204 AVLNV-GESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  270 (788)
T ss_pred             cEEEc-CCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeecc
Confidence            34444 333333 4555544  47899999999988 4664    35899999999999987532    24689999999


Q ss_pred             CCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc
Q 040699          320 NNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG  399 (689)
Q Consensus       320 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  399 (689)
                      +|.+. .+|..    +++|+.|++++|.++. +|.   ..++|+.|++++|++. .+|..    ..+|+.|++++|.+.+
T Consensus       271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        271 SNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS  336 (788)
T ss_pred             CCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccCcccc
Confidence            99987 56642    3579999999999884 444   3478999999999998 66642    3478899999999986


Q ss_pred             cCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccC
Q 040699          400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ  479 (689)
Q Consensus       400 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  479 (689)
                      ++.    -.++|+.|++++|+++.. |..   ..+|+.|++++|.+. .+|..   ..+|+.|++++|++++ +|..   
T Consensus       337 LP~----lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---  400 (788)
T PRK15387        337 LPT----LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---  400 (788)
T ss_pred             ccc----cccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---
Confidence            442    135899999999998853 432   357899999999998 45643   3579999999999985 4433   


Q ss_pred             CCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchh
Q 040699          480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ  559 (689)
Q Consensus       480 l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  559 (689)
                      .++|+.|++++|.++            .+|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..
T Consensus       401 ~s~L~~LdLS~N~Ls------------sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        401 PSELKELMVSGNRLT------------SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             ccCCCEEEccCCcCC------------CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            367999999999887            45543   346889999999998 67888999999999999999999888777


Q ss_pred             ccC
Q 040699          560 LVE  562 (689)
Q Consensus       560 ~~~  562 (689)
                      +..
T Consensus       465 L~~  467 (788)
T PRK15387        465 LRE  467 (788)
T ss_pred             HHH
Confidence            643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=5.9e-18  Score=184.88  Aligned_cols=225  Identities=27%  Similarity=0.410  Sum_probs=118.4

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV  391 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  391 (689)
                      .++.|++++|+++ .+|..++   ++|+.|++++|.+++ +|..+.  .+|+.|++++|.+. .+|..+.   .+|+.|+
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~  268 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLD  268 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEE
Confidence            4555555555555 4454432   355556665555552 333332  24566666666655 5554432   3556666


Q ss_pred             ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699          392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG  471 (689)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  471 (689)
                      +++|++..+ +..+  .++|+.|++++|+++.. |..+.  ++|+.|++++|.+.. +|..+  .++|+.|++++|.++.
T Consensus       269 Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        269 LFHNKISCL-PENL--PEELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS  339 (754)
T ss_pred             CcCCccCcc-cccc--CCCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc
Confidence            666655543 2222  13566666666665532 22221  356666666666652 33322  2466666666666663


Q ss_pred             CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699          472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  551 (689)
                       +|..+  .++|+.|++++|+++            .+|..+.  ++|+.|++++|+++. +|..+.  ..|+.|++++|+
T Consensus       340 -LP~~l--~~sL~~L~Ls~N~L~------------~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~  399 (754)
T PRK15370        340 -LPASL--PPELQVLDVSKNQIT------------VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNN  399 (754)
T ss_pred             -CChhh--cCcccEEECCCCCCC------------cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCC
Confidence             34333  256666666666654            3444332  466666666666663 343332  356666677766


Q ss_pred             CCCCCchhc----cCCCCCCEEeccCCcCc
Q 040699          552 LNGKIPHQL----VELKTLEVFSVAYNNLS  577 (689)
Q Consensus       552 l~~~~~~~~----~~l~~L~~L~l~~N~l~  577 (689)
                      +. .+|..+    ...+.+..+++.+|+++
T Consensus       400 L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        400 LV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            66 333332    23356666777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=6.6e-18  Score=184.52  Aligned_cols=247  Identities=24%  Similarity=0.361  Sum_probs=190.4

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV  391 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  391 (689)
                      +...|++++++++ .+|..+.   +.++.|++++|.++. +|..+.  ++|+.|++++|+++ .+|....   ++|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence            4567888888887 6776553   579999999999984 555443  58999999999998 8887654   4799999


Q ss_pred             ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699          392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG  471 (689)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  471 (689)
                      +++|.+..++ ..+  .++|+.|++++|++.. +|..+.  ++|+.|++++|++.. +|..+.  ++|+.|++++|.++.
T Consensus       248 Ls~N~L~~LP-~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        248 LSINRITELP-ERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             CcCCccCcCC-hhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence            9999998653 333  3589999999999874 565443  589999999999984 555443  579999999999985


Q ss_pred             CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699          472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  551 (689)
                       +|..+  .++|+.|++++|.++            .+|..+.  ++|+.|++++|+++ .+|..+.  ++|++|++++|+
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~  378 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALT------------SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNA  378 (754)
T ss_pred             -CCccc--cccceeccccCCccc------------cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCc
Confidence             44433  368999999999887            4565553  68999999999998 4666553  789999999999


Q ss_pred             CCCCCchhccCCCCCCEEeccCCcCcCCCCCcccc----ccccCcccccCCcCCC
Q 040699          552 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQ----FATFNENSYEGNTFLC  602 (689)
Q Consensus       552 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----~~~~~~~~~~~n~~~c  602 (689)
                      ++. +|..+.  .+|+.|++++|++. .+|+.+..    ...+..+.+.+||+..
T Consensus       379 Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        379 LTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             CCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            995 555544  47999999999998 55554333    3456678899999754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1e-18  Score=178.24  Aligned_cols=153  Identities=25%  Similarity=0.251  Sum_probs=66.4

Q ss_pred             EEeeCCCCCC-CCCCCCCCCCCcCEEEccCCcCccc----CChhhhhcCCCceEEEccCCcCCc------cccccccCCC
Q 040699          292 LSLVNDSLAG-PFRLPIHSHKRLGMLDISNNNFRGH----IPLEIGDILPSLHVFNISMNALDG------SIPSSFGNMN  360 (689)
Q Consensus       292 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~  360 (689)
                      |+|..+.+.+ .....+..+..|+.++++++.+++.    ++.. ....++++.++++++.+.+      ..+..+..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4454554442 1222334445566666666665421    1111 1223456666666655441      1223444555


Q ss_pred             CCcEEeccCCcccccchhhhhcCCCC---CCEEEccCCcCCccCc----ccccCC-CCccEEeccCCccccc----cccc
Q 040699          361 FLRILDLSNNQLTGEIPEHLAVGCVN---LESLVLSNNSLKGHMF----SRNFNL-ANLMSLQLEGNHFIGE----ISQS  428 (689)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~~~~~----~~~~  428 (689)
                      +|+.|++++|.+.+..+..+. .+.+   |++|++++|++.+...    ..+..+ ++|+.|++++|.+++.    .+..
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            666666666555432222221 1222   5555555555442111    112233 4445555555544311    1223


Q ss_pred             ccCCCCCCEEECCCCCCC
Q 040699          429 LSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       429 ~~~l~~L~~L~L~~n~i~  446 (689)
                      +..+++|++|++++|.+.
T Consensus       161 ~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         161 LRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHhCCCcCEEECcCCCCc
Confidence            334444444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.2e-18  Score=175.71  Aligned_cols=179  Identities=25%  Similarity=0.167  Sum_probs=81.3

Q ss_pred             EEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCC----CCCCCCCCCCcCEEEccCCcCcc------cCChhhhhcCC
Q 040699          267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGP----FRLPIHSHKRLGMLDISNNNFRG------HIPLEIGDILP  336 (689)
Q Consensus       267 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~  336 (689)
                      |++..+.+.+.--...+..+..+++++++++.++..    .+..+...+++++++++++.+.+      .++.. +..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~-l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG-LTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH-HHhcC
Confidence            444444444333333344555566666666555331    12223344555666665555431      01111 12244


Q ss_pred             CceEEEccCCcCCccccccccCCCC---CcEEeccCCcccccchhh---hhcCC-CCCCEEEccCCcCCccC----cccc
Q 040699          337 SLHVFNISMNALDGSIPSSFGNMNF---LRILDLSNNQLTGEIPEH---LAVGC-VNLESLVLSNNSLKGHM----FSRN  405 (689)
Q Consensus       337 ~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~---~~~~l-~~L~~L~l~~n~l~~~~----~~~~  405 (689)
                      +|+.|++++|.+.+..+..+..+..   |+.|++++|++.+.....   ....+ ++|+.|++++|.+++..    ...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            5666666666554433333333333   666666666554211111   11123 55566666666555211    1223


Q ss_pred             cCCCCccEEeccCCccccc----ccccccCCCCCCEEECCCCCCC
Q 040699          406 FNLANLMSLQLEGNHFIGE----ISQSLSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       406 ~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~  446 (689)
                      ..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            3445566666666655421    1222333445555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.7e-19  Score=149.58  Aligned_cols=182  Identities=25%  Similarity=0.428  Sum_probs=155.3

Q ss_pred             ccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCc
Q 040699          405 NFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ  484 (689)
Q Consensus       405 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  484 (689)
                      +..+.+.+.|.+++|+++. .|..+..+.+|+.|++++|+|. .+|..+..++.|+.|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            3457778889999999874 4556889999999999999998 78999999999999999999998 8899999999999


Q ss_pred             EEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCC
Q 040699          485 ILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  564 (689)
Q Consensus       485 ~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  564 (689)
                      .||+++|++..          ...|..|..++.|+.|.|+.|.+. .+|...+.+++|+.|.+..|.+. .+|..++.++
T Consensus       106 vldltynnl~e----------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt  173 (264)
T KOG0617|consen  106 VLDLTYNNLNE----------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT  173 (264)
T ss_pred             hhhcccccccc----------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence            99999998874          267888889999999999999998 77888899999999999999998 6788999999


Q ss_pred             CCCEEeccCCcCcCCCCCcccccc---ccCcccccCCcCCC
Q 040699          565 TLEVFSVAYNNLSGEIPEWEAQFA---TFNENSYEGNTFLC  602 (689)
Q Consensus       565 ~L~~L~l~~N~l~~~~~~~~~~~~---~~~~~~~~~n~~~c  602 (689)
                      .|+.|++.+|.++...|+ ++.+.   .-+...++.|||.-
T Consensus       174 ~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  174 RLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             HHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            999999999999866665 33332   22456677888765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=6.5e-18  Score=142.14  Aligned_cols=161  Identities=32%  Similarity=0.473  Sum_probs=101.6

Q ss_pred             CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEE
Q 040699          359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL  438 (689)
Q Consensus       359 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  438 (689)
                      +.+++.|.++.|+++ .+|..+.. +.+|+.|++.+|++.+ .+..+..++.|+.|+++-|++. ..|..|+.++.|++|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            444555555566555 55555544 5555555555555543 3334455666666666655543 566777777777777


Q ss_pred             ECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccc
Q 040699          439 FLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTR  517 (689)
Q Consensus       439 ~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~  517 (689)
                      |+.+|.+. ..+|+.|..++.|+.|++++|.+. .+|....++++|+.|.+.+|.+.            ..|..++.++.
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll------------~lpkeig~lt~  174 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL------------SLPKEIGDLTR  174 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh------------hCcHHHHHHHH
Confidence            77777665 356666777777777777777776 66666777777777777777665            56666777777


Q ss_pred             cceEeccCcccccCCccccc
Q 040699          518 IQTLNLSHNDLTGSIPSTFS  537 (689)
Q Consensus       518 L~~L~L~~n~l~~~~~~~~~  537 (689)
                      |++|++.+|+++ .+|+.++
T Consensus       175 lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  175 LRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             HHHHhcccceee-ecChhhh
Confidence            777777777766 4444333

>PLN03150 hypothetical protein; Provisional

Probab=99.45  E-value=3.6e-13  Score=147.24  Aligned_cols=113  Identities=35%  Similarity=0.576  Sum_probs=94.7

Q ss_pred             ccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCc
Q 040699          498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  577 (689)
Q Consensus       498 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  577 (689)
                      +|++|.+.|.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|++++|+++
T Consensus       424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            34444455688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccc-cccCcccccCCcCCCCCCC-CCCC
Q 040699          578 GEIPEWEAQF-ATFNENSYEGNTFLCGLPL-PICR  610 (689)
Q Consensus       578 ~~~~~~~~~~-~~~~~~~~~~n~~~c~~~~-~~c~  610 (689)
                      +.+|..+... .......+.+|+..|+.|. ..|.
T Consensus       504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        504 GRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             ccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999866542 3455678899999998764 3563

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.5e-12  Score=126.46  Aligned_cols=215  Identities=24%  Similarity=0.239  Sum_probs=150.5

Q ss_pred             CCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcc-hhHHhhcCCCCcEEECCCCcCCcccCCCCCCCC
Q 040699            2 GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISL-LQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHF   80 (689)
Q Consensus         2 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l   80 (689)
                      +++.+|+++.|.++++.... ..+....|++++.|||+.|-+..-. +-.+..-+|+|+.|+++.|.+........-.-+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~-~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAG-IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccc-hhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            35778899999888776521 1146788999999999998776521 124555589999999999987643332233357


Q ss_pred             CCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCC-CccccC
Q 040699           81 KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL-PWCLAN  158 (689)
Q Consensus        81 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~  158 (689)
                      ++|+.|.++.|.++  -.-...+...+|+|+.|.|..| .+.     +......-+..|++|+|++|.+-+.. -...+.
T Consensus       197 ~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~-----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIIL-----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             hhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccc-----eecchhhhhhHHhhccccCCccccccccccccc
Confidence            88999999999884  2223344444899999999887 222     22224556778999999999876321 245678


Q ss_pred             CCCCcEEEccceeeeeecCcccc------cCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccc
Q 040699          159 MTSLRILYVSYNQLTGSISSSPL------VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE  225 (689)
Q Consensus       159 l~~L~~L~L~~n~l~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  225 (689)
                      ++.|+.|+++.+.+. .+..-..      ...++|++|++..|++..--+...+..+++|+.|....|.+..+
T Consensus       270 l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            889999999999887 4332122      45778999999999887544555666778888888878777654

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=3.8e-11  Score=131.47  Aligned_cols=114  Identities=32%  Similarity=0.529  Sum_probs=101.8

Q ss_pred             CCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCccccc
Q 040699          458 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS  537 (689)
Q Consensus       458 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  537 (689)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.           |.+|..+..+++|+.|+|++|++++.+|+.++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-----------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-----------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLG  487 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-----------CcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence            4788999999999999999999999999999988776           47898999999999999999999999999999


Q ss_pred             CCCCCCEEeCcCCcCCCCCchhccCC-CCCCEEeccCCcCcCCCCC
Q 040699          538 NLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       538 ~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~  582 (689)
                      .+++|++|+|++|++++.+|..+... .++..+++.+|+..|..|.
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            99999999999999999999988764 5678899999988876654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.5e-12  Score=126.44  Aligned_cols=191  Identities=21%  Similarity=0.215  Sum_probs=142.6

Q ss_pred             CCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCC
Q 040699            2 GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFK   81 (689)
Q Consensus         2 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~   81 (689)
                      ..|++++.||||+|-+..++.+.+....+++|+.|+|+.|.+....-......+++|+.|.|+.|.++..........++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            36899999999999999988899989999999999999998775422223334789999999999987432222455689


Q ss_pred             CCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCC-Ccc----
Q 040699           82 SLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL-PWC----  155 (689)
Q Consensus        82 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~----  155 (689)
                      +|+.|+|.+|........+..+   +..|+.|+|++| .++.    -.....+.++.|+.|+++.|.++.+. |+.    
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~----~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDF----DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             cHHHhhhhcccccceecchhhh---hhHHhhccccCCccccc----ccccccccccchhhhhccccCcchhcCCCccchh
Confidence            9999999999421122333333   558999999998 4333    11125789999999999999998643 333    


Q ss_pred             -ccCCCCCcEEEccceeeeeecCc-ccccCCCCCCEEeccCCcceee
Q 040699          156 -LANMTSLRILYVSYNQLTGSISS-SPLVHLTSIEKLYLSNNHFRIP  200 (689)
Q Consensus       156 -~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~  200 (689)
                       ...+++|+.|++..|++. ..+. ..+..+++|+.|.+..|+++.+
T Consensus       296 kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence             357899999999999997 3332 2355677888999888888743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.1e-11  Score=114.43  Aligned_cols=134  Identities=25%  Similarity=0.327  Sum_probs=95.9

Q ss_pred             cCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCc
Q 040699          430 SKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIP  509 (689)
Q Consensus       430 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~  509 (689)
                      ...+-|+++||++|.|+ .+..+..-.+.++.|++++|++....  .+..+++|+.||+++|.++            .+-
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls------------~~~  345 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA------------ECV  345 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH------------hhh
Confidence            34456788888888877 55566667788888888888887432  3677888888888888776            233


Q ss_pred             hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCC-chhccCCCCCCEEeccCCcCcCCC
Q 040699          510 PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLEVFSVAYNNLSGEI  580 (689)
Q Consensus       510 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~  580 (689)
                      .+-..+.+.++|.|++|.+...  ..++.+-+|..||+++|+|.... -..+++++-|+.+.+.+||+.+.+
T Consensus       346 Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  346 GWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            3334566788888888887532  45677788888888888887532 235677888888888888887543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=1.5e-12  Score=130.41  Aligned_cols=195  Identities=30%  Similarity=0.413  Sum_probs=148.1

Q ss_pred             EEeccCCcccccchhhhhc-CCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCC
Q 040699          364 ILDLSNNQLTGEIPEHLAV-GCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN  442 (689)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  442 (689)
                      .|.|++-++. .+|...+. ++.--...+++.|++.. .+..+..+-.|+.+.++.|.+. .+|..+..+..|..|+++.
T Consensus        54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhh-cCCCccccccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            3455555555 55544443 23344566788888765 3444556677888888888765 5677788888888888888


Q ss_pred             CCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEe
Q 040699          443 NNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN  522 (689)
Q Consensus       443 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~  522 (689)
                      |++. .+|..+..+ -|+.|.+++|+++ ..|..+.....|..||.+.|.+.            .+|..++++.+|+.|+
T Consensus       131 NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------------slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  131 NQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------------SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             chhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh------------hchHHhhhHHHHHHHH
Confidence            8887 566555544 4788888888887 66777777788888888888876            7889999999999999


Q ss_pred             ccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699          523 LSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  579 (689)
Q Consensus       523 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  579 (689)
                      +..|++... |..+. .-.|..||+|.|+++ .+|-.|..+..|++|.|.+||+..+
T Consensus       196 vrRn~l~~l-p~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  196 VRRNHLEDL-PEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HhhhhhhhC-CHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            999999855 44444 456899999999999 7899999999999999999999843

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=1.2e-11  Score=117.19  Aligned_cols=140  Identities=17%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             cCCCCCCEEECCCCCCCCc----CChhhcCCCCCcEEEcCCCcccc----CCcccccCCCCCcEEeccccccccccccCC
Q 040699          430 SKCSSLEGLFLNNNNLSGK----IPRWLGDLTRLQYIIMPNNHLEG----PIPVEFCQLDLLQILDISDNNISGRLDLSC  501 (689)
Q Consensus       430 ~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~  501 (689)
                      ..-+.|++++...|++...    +...|...+.|+.+.+..|.+..    .....|.+++.|+.|||++|.++..-    
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg----  229 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG----  229 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----
Confidence            3445677777777766522    22345666677777777776642    22344667777777777777665210    


Q ss_pred             CcccCCCchhhccccccceEeccCcccccCCcccc-----cCCCCCCEEeCcCCcCCCC----CchhccCCCCCCEEecc
Q 040699          502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF-----SNLKHVESLDLSNNKLNGK----IPHQLVELKTLEVFSVA  572 (689)
Q Consensus       502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~  572 (689)
                         ...+...+..+++|+.|++++|.+...-...|     ...+.|+.|.+.+|.|+..    +...+...+.|..|+++
T Consensus       230 ---s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  230 ---SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             ---HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence               00223456667777888888777764332222     2357788888888887643    22233445778888888


Q ss_pred             CCcC
Q 040699          573 YNNL  576 (689)
Q Consensus       573 ~N~l  576 (689)
                      +|.+
T Consensus       307 gN~l  310 (382)
T KOG1909|consen  307 GNRL  310 (382)
T ss_pred             cccc
Confidence            8877

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=8.5e-11  Score=104.74  Aligned_cols=130  Identities=24%  Similarity=0.374  Sum_probs=45.2

Q ss_pred             hhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhh
Q 040699           26 ELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGE  105 (689)
Q Consensus        26 ~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~  105 (689)
                      .+.+..++++|+|++|.|+.  +..+...+.+|++|++++|.++.. .  .+..+++|++|++++|.+   ..+...+..
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l-~--~l~~L~~L~~L~L~~N~I---~~i~~~l~~   85 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL-E--GLPGLPRLKTLDLSNNRI---SSISEGLDK   85 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS------S-CHHHHH
T ss_pred             cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc-c--CccChhhhhhcccCCCCC---CccccchHH
Confidence            35566678999999999886  445554478899999999998854 2  577889999999999998   344444443


Q ss_pred             cCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCc----cccCCCCCcEEEc
Q 040699          106 SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPW----CLANMTSLRILYV  167 (689)
Q Consensus       106 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L  167 (689)
                      .+++|+.|++++|.+.. ..++  ..+..+++|++|+|.+|+++.. +.    .+..+|+|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~-l~~l--~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISD-LNEL--EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---S-CCCC--GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCC-hHHh--HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            47888888888884432 1112  2466778888888888877632 21    2345555655553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.1e-10  Score=122.32  Aligned_cols=155  Identities=32%  Similarity=0.459  Sum_probs=73.4

Q ss_pred             CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699          386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP  465 (689)
Q Consensus       386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  465 (689)
                      +|+.|++++|.+.... ..+..+++|+.|++++|++... +......++|+.|++++|++. .+|.....+..|+++.++
T Consensus       141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhhhh-hhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            3444444444433221 2233444455555555544322 222224455555555555555 334333333445555555


Q ss_pred             CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEE
Q 040699          466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL  545 (689)
Q Consensus       466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  545 (689)
                      +|.+. ..+..+..+.++..+.+.+|++.            ..+..+..+++++.|++++|.++...+  ++.+.+++.|
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L  282 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLE------------DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL  282 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceee------------eccchhccccccceecccccccccccc--ccccCccCEE
Confidence            55322 23334445555555555555543            224445555556666666666553322  5555666666


Q ss_pred             eCcCCcCCCCCch
Q 040699          546 DLSNNKLNGKIPH  558 (689)
Q Consensus       546 ~L~~N~l~~~~~~  558 (689)
                      ++++|.+....|.
T Consensus       283 ~~s~n~~~~~~~~  295 (394)
T COG4886         283 DLSGNSLSNALPL  295 (394)
T ss_pred             eccCccccccchh
Confidence            6666665544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=4.4e-12  Score=127.16  Aligned_cols=196  Identities=27%  Similarity=0.470  Sum_probs=162.8

Q ss_pred             CCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCE
Q 040699          358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG  437 (689)
Q Consensus       358 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  437 (689)
                      .+.--...|++.|++. ++|..+.. +..|+.+.+..|.+.. .+..+..+..|+.++|+.|++. ..|..+..| -|+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcC-ccee
Confidence            3445567899999998 99988776 8889999999998875 4567788999999999999987 455555554 4899


Q ss_pred             EECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccc
Q 040699          438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTR  517 (689)
Q Consensus       438 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~  517 (689)
                      |.+++|+++ .+|..++....|..|+.+.|.+. ..|..++++.+|+.|.+..|++.            ..|+.+..+ .
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~------------~lp~El~~L-p  212 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE------------DLPEELCSL-P  212 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh------------hCCHHHhCC-c
Confidence            999999998 78888889999999999999998 67778899999999999999987            678888855 5


Q ss_pred             cceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccC---CCCCCEEeccCCc
Q 040699          518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE---LKTLEVFSVAYNN  575 (689)
Q Consensus       518 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~l~~N~  575 (689)
                      |..||++.|+++ .+|..|..++.|++|-|.+|.+. ..|..+.-   ..-.++|+..-++
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            889999999999 78999999999999999999998 55655432   3445667776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=2e-10  Score=120.56  Aligned_cols=199  Identities=33%  Similarity=0.462  Sum_probs=154.4

Q ss_pred             cEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCC-CCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699          363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL-ANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN  441 (689)
Q Consensus       363 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  441 (689)
                      ..++.+.+.+...+.. ... .+.++.+++.+|.+..+.+. .... ++|+.|++++|++.. ++..+..+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~~~-~~~-~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNISE-LLE-LTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCchh-hhc-ccceeEEecCCcccccCccc-cccchhhcccccccccchhh-hhhhhhccccccccccC
Confidence            3566666666322222 222 46788888888888765443 2234 389999999999864 44568899999999999


Q ss_pred             CCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceE
Q 040699          442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTL  521 (689)
Q Consensus       442 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L  521 (689)
                      +|++. .++......+.|+.|++++|++. .+|.....+..|+++.+++|.+.            ..+..+..+.++..+
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~------------~~~~~~~~~~~l~~l  237 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII------------ELLSSLSNLKNLSGL  237 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce------------ecchhhhhccccccc
Confidence            99998 55655557899999999999999 45555455677999999999644            567778889999999


Q ss_pred             eccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       522 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      .+.+|++. ..+..++.++++++|++++|.++...+  +..+.+++.+++++|.++...|.
T Consensus       238 ~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            99999987 346778899999999999999995544  88889999999999998866554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=2.4e-10  Score=101.87  Aligned_cols=107  Identities=28%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEE
Q 040699          360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLF  439 (689)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  439 (689)
                      ..+++|++.+|.|. .+. .....+.+|+.|++++|.+..+.  .+..++.|++|++++|+++...+.....+++|++|+
T Consensus        19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            34555555555554 332 22222445555555555554422  234455555555555555433222122455555555


Q ss_pred             CCCCCCCCcC-ChhhcCCCCCcEEEcCCCccc
Q 040699          440 LNNNNLSGKI-PRWLGDLTRLQYIIMPNNHLE  470 (689)
Q Consensus       440 L~~n~i~~~~-~~~l~~l~~L~~L~l~~n~l~  470 (689)
                      +++|+|.... -..+..+++|+.|++.+|++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5555554211 123444455555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=3.2e-11  Score=114.22  Aligned_cols=221  Identities=18%  Similarity=0.138  Sum_probs=153.2

Q ss_pred             CCCCCCCEEeCCCCCCCC-ccccc-------hhhcCCCCCCEEECCCCCCCCcchh---HHhhcCCCCcEEECCCCcCCc
Q 040699            2 GSFPSLNTLYLLFNNFTD-IATTA-------QELHSFTNLEYLSLDFSSLHISLLQ---SIASIFPSLKNLSMSGCEVNG   70 (689)
Q Consensus         2 ~~l~~L~~L~Ls~n~i~~-~~~~~-------~~~~~~~~L~~L~L~~~~i~~~~~~---~~~~~l~~L~~L~Ls~n~l~~   70 (689)
                      ++.++|+..++|+---.- .+++|       +.+..+++|++|+||.|.+....++   .+.+.+..|++|.|.+|.+..
T Consensus        55 ~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~  134 (382)
T KOG1909|consen   55 ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP  134 (382)
T ss_pred             hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence            455678888887642110 01333       3466788999999999988776665   333447889999999987652


Q ss_pred             cc------------CCCCCCCCCCCCeeeCCCCccccCCc-cchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCC
Q 040699           71 LV------------RGQGFPHFKSLEHLDMSSTRIALNTS-FLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH  137 (689)
Q Consensus        71 ~~------------~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~  137 (689)
                      .-            .....+.-+.||++....|++...+. .....++..+.|+.+.++.|.+......+....+..|++
T Consensus       135 ~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~  214 (382)
T KOG1909|consen  135 EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPH  214 (382)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCc
Confidence            11            11133455789999999998732221 123445668899999999995555444455568999999


Q ss_pred             CCEEeCCCCcCcc----CCCccccCCCCCcEEEccceeeeeecCcccc-----cCCCCCCEEeccCCcceeec---Cccc
Q 040699          138 LQELYMADNDLRG----SLPWCLANMTSLRILYVSYNQLTGSISSSPL-----VHLTSIEKLYLSNNHFRIPI---SLEP  205 (689)
Q Consensus       138 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~---~~~~  205 (689)
                      |+.|||.+|-++.    .+...+..+++|+.|++++|.+...-.. +|     ...+.|+.|.+.+|.++...   ....
T Consensus       215 LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~-a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~  293 (382)
T KOG1909|consen  215 LEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI-AFVDALKESAPSLEVLELAGNEITRDAALALAAC  293 (382)
T ss_pred             ceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH-HHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence            9999999998874    3455677889999999999988632111 22     23689999999999987321   1233


Q ss_pred             ccCCCCcceeeccCCccc
Q 040699          206 LFNHSRLKIFYADNNELN  223 (689)
Q Consensus       206 ~~~l~~L~~L~l~~n~~~  223 (689)
                      ....+.|..|.+++|.+.
T Consensus       294 ~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  294 MAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhcchhhHHhcCCccccc
Confidence            455899999999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=8e-11  Score=108.84  Aligned_cols=204  Identities=22%  Similarity=0.251  Sum_probs=140.2

Q ss_pred             CCCCCEEeCCCCC--------CCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCccc---
Q 040699            4 FPSLNTLYLLFNN--------FTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLV---   72 (689)
Q Consensus         4 l~~L~~L~Ls~n~--------i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---   72 (689)
                      +..|.+|-+++..        +..  .++-.+.-+++|..+.++.|.-..  +..+...-|.|+++.+.+..+....   
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~--~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~~~l~  256 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPN--RLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDVPSLL  256 (490)
T ss_pred             hhheeEEEecCCCCCCcccccccc--ccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccccccc
Confidence            4567777777542        222  344556677889999988875332  2222222477888887765433110   


Q ss_pred             CC-------------------CCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccC
Q 040699           73 RG-------------------QGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLC  133 (689)
Q Consensus        73 ~~-------------------~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~  133 (689)
                      |.                   .....++.|+.+|||+|.|   ..+.+++-- .|.++.|++|+|.+..    +  +.+.
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I---~~iDESvKL-~Pkir~L~lS~N~i~~----v--~nLa  326 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI---TQIDESVKL-APKLRRLILSQNRIRT----V--QNLA  326 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchHhhhhhccccccch---hhhhhhhhh-ccceeEEeccccceee----e--hhhh
Confidence            00                   0122457899999999988   555555555 7899999999984332    2  3577


Q ss_pred             CCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcc
Q 040699          134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLK  213 (689)
Q Consensus       134 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  213 (689)
                      .+++|++|||++|.++ ....+-.++-++++|.++.|.+. .+.  .+.++-+|..||+++|++..-.....+.+++-|+
T Consensus       327 ~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  327 ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE  402 (490)
T ss_pred             hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence            8899999999999887 34444556778899999999886 444  3777888999999999987444445678889999


Q ss_pred             eeeccCCccccc
Q 040699          214 IFYADNNELNAE  225 (689)
Q Consensus       214 ~L~l~~n~~~~~  225 (689)
                      .+.+.+|++.+.
T Consensus       403 ~l~L~~NPl~~~  414 (490)
T KOG1259|consen  403 TLRLTGNPLAGS  414 (490)
T ss_pred             HHhhcCCCcccc
Confidence            999999988653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1.1e-10  Score=122.54  Aligned_cols=245  Identities=25%  Similarity=0.263  Sum_probs=146.2

Q ss_pred             CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699          310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES  389 (689)
Q Consensus       310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  389 (689)
                      +..++.+.+..|.+. .+.... ..+.+++.+++.+|.+..+. ..+..+++|++|++++|.|+ .+..-..  ++.|+.
T Consensus        71 l~~l~~l~l~~n~i~-~~~~~l-~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~~l~~--l~~L~~  144 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KILNHL-SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLEGLST--LTLLKE  144 (414)
T ss_pred             hHhHHhhccchhhhh-hhhccc-ccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-cccchhh--ccchhh
Confidence            344455555555554 211111 22556777777777666432 22556777777777777776 4433222  455777


Q ss_pred             EEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCc
Q 040699          390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH  468 (689)
Q Consensus       390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  468 (689)
                      |++++|.+..+  ..+..+++|+.+++++|.+....+ . ...+.+++.+++++|.+..  ...+..+..+..+++..|.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~  219 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK  219 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence            77777777653  334447777777787777765543 2 4667778888888887762  2233334455555777777


Q ss_pred             cccCCcccccCCCC--CcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699          469 LEGPIPVEFCQLDL--LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD  546 (689)
Q Consensus       469 l~~~~~~~~~~l~~--L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  546 (689)
                      ++..-+  +..+..  |+.+++++|++.            ..+..+..+..+..|++.+|++...  ..+.....+..+.
T Consensus       220 i~~~~~--l~~~~~~~L~~l~l~~n~i~------------~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~  283 (414)
T KOG0531|consen  220 ISKLEG--LNELVMLHLRELYLSGNRIS------------RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELW  283 (414)
T ss_pred             ceeccC--cccchhHHHHHHhcccCccc------------cccccccccccccccchhhcccccc--ccccccchHHHhc
Confidence            663322  122222  677777777765            3335566777788888888877643  3345567777777


Q ss_pred             CcCCcCCCC---Cchh-ccCCCCCCEEeccCCcCcCCCC
Q 040699          547 LSNNKLNGK---IPHQ-LVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       547 L~~N~l~~~---~~~~-~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      +..|.+...   .... ....+.+..+.+.+|+.....+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            777776622   1111 3445777788888887766544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.5e-09  Score=79.36  Aligned_cols=59  Identities=41%  Similarity=0.631  Sum_probs=36.1

Q ss_pred             ccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCc
Q 040699          517 RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN  575 (689)
Q Consensus       517 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  575 (689)
                      +|++|++++|+++.+.+..|.++++|++|++++|+++...|+.|..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666665555566666666666666666665555566666666666666664

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.81  E-value=5.6e-10  Score=117.09  Aligned_cols=217  Identities=29%  Similarity=0.346  Sum_probs=146.8

Q ss_pred             CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEE
Q 040699          335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL  414 (689)
Q Consensus       335 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  414 (689)
                      +..++.+.+..|.+.. .-..+..+.+|+.+++.+|.+. .+.... ..+++|++|++++|.|+.+.  .+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhh
Confidence            5577777788888764 2344677888999999999887 554422 23788888888888887643  34456678888


Q ss_pred             eccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccc
Q 040699          415 QLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI  493 (689)
Q Consensus       415 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  493 (689)
                      ++.+|.+...  ..+..+++|+.+++++|.+....+ . ...+.+++.+.+.+|.+....  .+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence            8888887644  345567888888888888874444 2 456778888888888776432  233344455557777766


Q ss_pred             ccccccCCCcccCCCchhhcccc--ccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699          494 SGRLDLSCNKLIGPIPPKIGNLT--RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  571 (689)
Q Consensus       494 ~~~l~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  571 (689)
                      +.        +     ..+..+.  .|+.+++++|++. ..+..+..+..+..|++.+|++...  ..+.....+..+..
T Consensus       221 ~~--------~-----~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~  284 (414)
T KOG0531|consen  221 SK--------L-----EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWL  284 (414)
T ss_pred             ee--------c-----cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhcc
Confidence            52        1     1122223  3888999999887 3446677788889999999988754  23444556666666


Q ss_pred             cCCcCc
Q 040699          572 AYNNLS  577 (689)
Q Consensus       572 ~~N~l~  577 (689)
                      ..|++.
T Consensus       285 ~~~~~~  290 (414)
T KOG0531|consen  285 NDNKLA  290 (414)
T ss_pred             Ccchhc
Confidence            677654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=9.6e-10  Score=101.80  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=34.1

Q ss_pred             CCCCCEEeCCCCcCcc-CCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcce
Q 040699          135 LMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR  198 (689)
Q Consensus       135 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  198 (689)
                      +|++..+-+..|.+.. ...+.+..++.+..|+|+.|+|..--...++.++++|..|.++++++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            3445555555554432 123345555566666666666653333334556666666666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.1e-09  Score=76.49  Aligned_cols=57  Identities=37%  Similarity=0.498  Sum_probs=24.4

Q ss_pred             CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699          435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  491 (689)
Q Consensus       435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  491 (689)
                      |++|++++|++....+.+|.++++|++|++++|.++...+.+|.++++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            444444444444333334444444444444444444444444444444444444444

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.74  E-value=3e-10  Score=117.34  Aligned_cols=57  Identities=23%  Similarity=0.222  Sum_probs=25.4

Q ss_pred             CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699          435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  494 (689)
                      |...+.++|.+. .+..++.-++.|+.|+|++|+++..  +.+..++.|++|||++|.+.
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence            334444444444 3333444444455555555544422  13444444555555444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=1.2e-09  Score=112.96  Aligned_cols=129  Identities=26%  Similarity=0.347  Sum_probs=98.7

Q ss_pred             CCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccC
Q 040699           80 FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLAN  158 (689)
Q Consensus        80 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  158 (689)
                      ...|.+.+.++|.+   ......+-- ++.|+.|+|++| +...       ..+..|++|++|||++|.+....--....
T Consensus       163 Wn~L~~a~fsyN~L---~~mD~SLql-l~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g  231 (1096)
T KOG1859|consen  163 WNKLATASFSYNRL---VLMDESLQL-LPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLRHVPQLSMVG  231 (1096)
T ss_pred             hhhHhhhhcchhhH---HhHHHHHHH-HHHhhhhccchhhhhhh-------HHHHhcccccccccccchhccccccchhh
Confidence            35677778888876   333334433 788999999999 4443       36888999999999999998432223334


Q ss_pred             CCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccc
Q 040699          159 MTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN  223 (689)
Q Consensus       159 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  223 (689)
                      | +|+.|.+++|.++ .+.  .+.++++|+.||+++|-+.+.-...+++.+..|+.|+|.+|++-
T Consensus       232 c-~L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  232 C-KLQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-hheeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4 4999999999988 554  37889999999999998887666777888899999999999874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1e-09  Score=101.62  Aligned_cols=182  Identities=21%  Similarity=0.173  Sum_probs=76.9

Q ss_pred             CCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCc-cccCCccchhhhhcCCCcc
Q 040699           33 LEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR-IALNTSFLQIIGESMPSLK  111 (689)
Q Consensus        33 L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~l~~L~  111 (689)
                      |++|||+...|+...+..+-..|.+|+.|++.++++.+.+.. .+++-.+|+.|+++.+. +  +......+..+|..|.
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~--t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGF--TENALQLLLSSCSRLD  263 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccccc--chhHHHHHHHhhhhHh
Confidence            555555555555444443333355555555555555443332 34444555555555443 2  1222233344455555


Q ss_pred             EEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCc--c-CCCccccCCCCCcEEEccceeeeeecCcccccCCCCCC
Q 040699          112 YLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLR--G-SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE  188 (689)
Q Consensus       112 ~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~--~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  188 (689)
                      .|+|+.|.............+  -++|+.|+|++++=.  . .+..-...+++|.+|||++|..-..-....|.+++.|+
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             hcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            555555521111111100011  124555555544311  0 11111234555666666554321111111344555566


Q ss_pred             EEeccCCcceeecCcccccCCCCcceeeccC
Q 040699          189 KLYLSNNHFRIPISLEPLFNHSRLKIFYADN  219 (689)
Q Consensus       189 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  219 (689)
                      +|.++.|....+...-.+...+.|.+|+..+
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence            6666555533222223344455555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=3.9e-08  Score=110.25  Aligned_cols=149  Identities=22%  Similarity=0.283  Sum_probs=89.5

Q ss_pred             CCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCc--cccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCcccc
Q 040699           56 PSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR--IALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGL  132 (689)
Q Consensus        56 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l  132 (689)
                      ...+...+-+|.+... +  .-..+++|++|-+..|.  +   ..++...+..++.|++|||++| ..+.    +|. .+
T Consensus       523 ~~~rr~s~~~~~~~~~-~--~~~~~~~L~tLll~~n~~~l---~~is~~ff~~m~~LrVLDLs~~~~l~~----LP~-~I  591 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-A--GSSENPKLRTLLLQRNSDWL---LEISGEFFRSLPLLRVLDLSGNSSLSK----LPS-SI  591 (889)
T ss_pred             hheeEEEEeccchhhc-c--CCCCCCccceEEEeecchhh---hhcCHHHHhhCcceEEEECCCCCccCc----CCh-HH
Confidence            3456666666655422 1  12334567777777664  3   4444555555777888888776 3344    665 77


Q ss_pred             CCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcce-eecCcccccCCCC
Q 040699          133 CSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSR  211 (689)
Q Consensus       133 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~  211 (689)
                      +.+-+||+|+|+++.+. .+|.+++++.+|.+|++..+.....+ .+....+++|++|.+...... +......+.++.+
T Consensus       592 ~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  592 GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            77888888888888777 67778888888888888776654333 324555777887777654421 1112233444555


Q ss_pred             cceeec
Q 040699          212 LKIFYA  217 (689)
Q Consensus       212 L~~L~l  217 (689)
                      |+.+..
T Consensus       670 L~~ls~  675 (889)
T KOG4658|consen  670 LENLSI  675 (889)
T ss_pred             hhhhee
Confidence            554444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.58  E-value=1.1e-07  Score=106.86  Aligned_cols=200  Identities=25%  Similarity=0.275  Sum_probs=129.9

Q ss_pred             CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCc--CcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcE
Q 040699          287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNN--FRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRI  364 (689)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  364 (689)
                      ...+.+.+.++.+..+..  -..++.|++|-+.+|.  +. .++..+|..+|.|+.||+++|.-.+.+|..++++-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            456677776666654322  1234578888888886  44 788888888999999999988766788999999999999


Q ss_pred             EeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc--cccccccccCCCCCCEEECCC
Q 040699          365 LDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF--IGEISQSLSKCSSLEGLFLNN  442 (689)
Q Consensus       365 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~l~~L~~L~L~~  442 (689)
                      |++++..+. .+|..+.. +.+|.+|++..+.-....+.....+++|++|.+.....  ....-..+..+.+|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999999998 88888876 88899999988765544555566688899888876541  111222334455555555433


Q ss_pred             CCCCCcCChhhcCCCCCc----EEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699          443 NNLSGKIPRWLGDLTRLQ----YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       443 n~i~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  494 (689)
                      ...  .+..-+..+.+|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence            322  0111122223332    2332333322 33445666778888888888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.5e-09  Score=100.67  Aligned_cols=184  Identities=20%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             CCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCc-CCcccCCCCCCCCCCCC
Q 040699            6 SLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCE-VNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         6 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~   84 (689)
                      .|++||||...|+. ..+-..++.|.+|+.|.|.++.+.+.....+++ -.+|+.|+++.+. ++.....-.++.|+.|.
T Consensus       186 Rlq~lDLS~s~it~-stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV-STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeH-HHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence            47899999888875 234456788999999999999998875567777 6899999999874 22111111467899999


Q ss_pred             eeeCCCCccccCCccchh-hhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcC-ccCCCccccCCCCC
Q 040699           85 HLDMSSTRIALNTSFLQI-IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDL-RGSLPWCLANMTSL  162 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L  162 (689)
                      .|++++|..  ..+.-.. +..--++|+.|+|+++........+.. -...||+|.+|||++|.. +......|-+++.|
T Consensus       264 ~LNlsWc~l--~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  264 ELNLSWCFL--FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hcCchHhhc--cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            999999986  3332222 222235899999999822111112322 456899999999998853 33333456789999


Q ss_pred             cEEEccceeeeeecCc--ccccCCCCCCEEeccCCc
Q 040699          163 RILYVSYNQLTGSISS--SPLVHLTSIEKLYLSNNH  196 (689)
Q Consensus       163 ~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~  196 (689)
                      ++|.++.|...  +|.  -.+...+.|.+|++.++-
T Consensus       341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            99999999732  222  135667899999998874

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.42  E-value=7.2e-09  Score=100.81  Aligned_cols=84  Identities=30%  Similarity=0.337  Sum_probs=36.0

Q ss_pred             CCEEECCCCC-CCCcchhHHhhcCCCCcEEECCCCcCC-cccCCCCCCCCCCCCeeeCCCCc-cccCCccchhhhhcCCC
Q 040699           33 LEYLSLDFSS-LHISLLQSIASIFPSLKNLSMSGCEVN-GLVRGQGFPHFKSLEHLDMSSTR-IALNTSFLQIIGESMPS  109 (689)
Q Consensus        33 L~~L~L~~~~-i~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~l~~  109 (689)
                      |+.|.+.++. .....+..+...+|++++|++.+|... +..-...-..+++|++|++..|. |  +....+.+.+.+++
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i--T~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI--TDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh--HHHHHHHHHHhhhh
Confidence            5555555542 222223344444555555555555311 11000011234555555555532 2  22333334444555


Q ss_pred             ccEEECCCC
Q 040699          110 LKYLSLSNS  118 (689)
Q Consensus       110 L~~L~Ls~~  118 (689)
                      |++++++.|
T Consensus       218 L~~lNlSwc  226 (483)
T KOG4341|consen  218 LKYLNLSWC  226 (483)
T ss_pred             HHHhhhccC
Confidence            555555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.39  E-value=1e-08  Score=99.68  Aligned_cols=265  Identities=18%  Similarity=0.143  Sum_probs=116.7

Q ss_pred             CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCC-CCCCcchhHHhhcCCCCcEEECCCCc-CCcccCCCCCCCCCCCC
Q 040699            7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFS-SLHISLLQSIASIFPSLKNLSMSGCE-VNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~   84 (689)
                      |+.|.+++++-.....+...-.+|+++++|.+.+| ++++.....+.+.+++|++|++..|. ++......--..+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            55566666554433334444455666666666655 34444444555556666666666532 22221111123455666


Q ss_pred             eeeCCCCccccCCccchhhhhcCCCccEEECC--------------------------CC-CCCCCCCccCccccCCCCC
Q 040699           85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLS--------------------------NS-TRGTNSSRILDQGLCSLMH  137 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls--------------------------~~-~~~~~~~~~~~~~l~~l~~  137 (689)
                      +|+++++.-. .+...+...+.+..++.+.+.                          +| .+.+..  +- ..-..+..
T Consensus       220 ~lNlSwc~qi-~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~--~~-~i~~~c~~  295 (483)
T KOG4341|consen  220 YLNLSWCPQI-SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED--LW-LIACGCHA  295 (483)
T ss_pred             HhhhccCchh-hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH--HH-HHhhhhhH
Confidence            6666665421 122222223333344444333                          43 111100  00 01224455


Q ss_pred             CCEEeCCCCcC-ccCCCccc-cCCCCCcEEEccceeeeeecCcccc-cCCCCCCEEeccCCcceeecCccc-ccCCCCcc
Q 040699          138 LQELYMADNDL-RGSLPWCL-ANMTSLRILYVSYNQLTGSISSSPL-VHLTSIEKLYLSNNHFRIPISLEP-LFNHSRLK  213 (689)
Q Consensus       138 L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~  213 (689)
                      |+.|+.+++.- ++..-.++ .++++|++|-++.++.-+......+ .+++.|+.+++.++.......+.. -.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            55555554432 11111122 2455666666665542111111111 234556666666655432222222 23455566


Q ss_pred             eeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEE
Q 040699          214 IFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLS  293 (689)
Q Consensus       214 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~  293 (689)
                      .+.++.+........                       ..+...-.....++.+.++++....+.--.....+++|+.++
T Consensus       376 ~lslshce~itD~gi-----------------------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~  432 (483)
T KOG4341|consen  376 VLSLSHCELITDEGI-----------------------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE  432 (483)
T ss_pred             cCChhhhhhhhhhhh-----------------------hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence            665555443221100                       001111123456777777777654333323345667777777


Q ss_pred             eeCCC
Q 040699          294 LVNDS  298 (689)
Q Consensus       294 l~~~~  298 (689)
                      +.+++
T Consensus       433 l~~~q  437 (483)
T KOG4341|consen  433 LIDCQ  437 (483)
T ss_pred             eechh
Confidence            76653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=4e-08  Score=80.54  Aligned_cols=133  Identities=21%  Similarity=0.242  Sum_probs=78.4

Q ss_pred             CCEEECCCCCCCCcCChh---hcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699          435 LEGLFLNNNNLSGKIPRW---LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK  511 (689)
Q Consensus       435 L~~L~L~~n~i~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~  511 (689)
                      +..++|+.|++. .++.+   +.....|+..++++|.+....+..-...+..+.|++++|.++            .+|..
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis------------dvPeE   95 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS------------DVPEE   95 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh------------hchHH
Confidence            455667777665 23332   333455666677777776433333334456677777777666            56766


Q ss_pred             hccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       512 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      +..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.. +|..+..-......++.++++.+..+.
T Consensus        96 ~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen   96 LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcc
Confidence            777777777777777776 445555557777777777777663 333333223333445566666655554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=7.2e-07  Score=83.15  Aligned_cols=188  Identities=18%  Similarity=0.134  Sum_probs=117.8

Q ss_pred             cCCCCCCEEECCCCCCCCcchh---HHhhcCCCCcEEECCCCcCCcccCCCCC-CCCCCCCeeeCCCCccccCCccchhh
Q 040699           28 HSFTNLEYLSLDFSSLHISLLQ---SIASIFPSLKNLSMSGCEVNGLVRGQGF-PHFKSLEHLDMSSTRIALNTSFLQII  103 (689)
Q Consensus        28 ~~~~~L~~L~L~~~~i~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~  103 (689)
                      ..+++++.+||.+|.|++  +.   ++...+|.|++|+++.|++...+.  .+ ..+++|++|-|.+..++  -...+..
T Consensus        68 ~~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~--w~~~~s~  141 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLS--WTQSTSS  141 (418)
T ss_pred             HHhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCC--hhhhhhh
Confidence            457788889999888886  44   455558889999999888875543  34 36778888888887763  2222333


Q ss_pred             hhcCCCccEEECCCC-CCCCC--CCccCccccCCCCCCCEEeCCCCcCccC--CCccccCCCCCcEEEccceeeeeecCc
Q 040699          104 GESMPSLKYLSLSNS-TRGTN--SSRILDQGLCSLMHLQELYMADNDLRGS--LPWCLANMTSLRILYVSYNQLTGSISS  178 (689)
Q Consensus       104 ~~~l~~L~~L~Ls~~-~~~~~--~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~  178 (689)
                      ...+|.++.|.+|.| ....+  ...+.+    .-+.+++|.+..|.....  ...--.-++++..+.+..|.+...-..
T Consensus       142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e  217 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNSLRQLNLDDNCIED----WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE  217 (418)
T ss_pred             hhcchhhhhhhhccchhhhhccccccccc----cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc
Confidence            344777788877776 11110  000110    112344444444433210  001112345677777777776533333


Q ss_pred             ccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccc
Q 040699          179 SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE  225 (689)
Q Consensus       179 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  225 (689)
                      ..+..++.+-.|+++.+.+....+...+.+++.|..|.+.++++...
T Consensus       218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            35666777888999999887666677788999999999999887654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=1.2e-06  Score=80.62  Aligned_cols=244  Identities=20%  Similarity=0.181  Sum_probs=111.9

Q ss_pred             ccCCCCCCEEEccCCcCcCCCChHHHhcCCC---CcEEEeeCCCCCCC-----------CCCCCCCCCCcCEEEccCCcC
Q 040699          258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTK---LRQLSLVNDSLAGP-----------FRLPIHSHKRLGMLDISNNNF  323 (689)
Q Consensus       258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~---L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~~  323 (689)
                      +..+..+..+++++|.+......++.....+   |+...++.- ++|-           ...++-+||+|+.+++++|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            3446777888888888776666655443333   333333321 1111           011244566666666666666


Q ss_pred             cccCChhhh---hcCCCceEEEccCCcCCcccccc-------------ccCCCCCcEEeccCCcccccchhhhhcCCCCC
Q 040699          324 RGHIPLEIG---DILPSLHVFNISMNALDGSIPSS-------------FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNL  387 (689)
Q Consensus       324 ~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  387 (689)
                      ....|....   ..-..|++|.+.+|.+....-..             ..+-|.|++++...|++. ..+.....     
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a-----  178 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSA-----  178 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHH-----
Confidence            544443222   22345666666666543211111             112234444444444443 22211110     


Q ss_pred             CEEEccCCcCCccCcccccCCCCccEEeccCCccccc-----ccccccCCCCCCEEECCCCCCCCc----CChhhcCCCC
Q 040699          388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE-----ISQSLSKCSSLEGLFLNNNNLSGK----IPRWLGDLTR  458 (689)
Q Consensus       388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~  458 (689)
                                     ..+..-.+|+++.+..|.|...     .-..+..+++|++||+.+|.++..    +..++...+.
T Consensus       179 ---------------~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         179 ---------------ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             ---------------HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence                           1111123455555555544211     011223455666666666655521    1223334445


Q ss_pred             CcEEEcCCCccccCCcccc----c--CCCCCcEEeccccccccc--cccCCCcccCCCchhhccccccceEeccCcccc
Q 040699          459 LQYIIMPNNHLEGPIPVEF----C--QLDLLQILDISDNNISGR--LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT  529 (689)
Q Consensus       459 L~~L~l~~n~l~~~~~~~~----~--~l~~L~~L~l~~n~~~~~--l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  529 (689)
                      |+.|.+.+|-++......+    .  ..|+|..|-..+|...+.  ++.+-|.+.      -..++-|..|.+.+|.+.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e------~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE------QDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh------hcccHHHHHHHHccCcch
Confidence            6666666665543322221    1  235666666666655431  111111110      134566777777777776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=1.1e-06  Score=80.87  Aligned_cols=217  Identities=18%  Similarity=0.138  Sum_probs=124.9

Q ss_pred             CCCCCEEeCCCCCCCC--ccccchhhcCCCCCCEEECCCCCCCC---cc-------hhHHhhcCCCCcEEECCCCcCCcc
Q 040699            4 FPSLNTLYLLFNNFTD--IATTAQELHSFTNLEYLSLDFSSLHI---SL-------LQSIASIFPSLKNLSMSGCEVNGL   71 (689)
Q Consensus         4 l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~~L~~L~L~~~~i~~---~~-------~~~~~~~l~~L~~L~Ls~n~l~~~   71 (689)
                      +..++.+|||+|.|..  .+.++..+.+-++|+..+++.-....   ..       .+++.+ ||+|+..+||.|.+...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcc
Confidence            4567889999998864  22355667777888888887543221   10       124455 89999999999987643


Q ss_pred             cCC---CCCCCCCCCCeeeCCCCccccCCccchhhh------------hcCCCccEEECCCCCCCCCCCccCccccCCCC
Q 040699           72 VRG---QGFPHFKSLEHLDMSSTRIALNTSFLQIIG------------ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLM  136 (689)
Q Consensus        72 ~~~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~------------~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~  136 (689)
                      .+.   ..++.-..|.+|.+++|.++  ......++            .+-|.|++.....|..........+..+..-.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG--p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG--PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC--ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            332   14456678999999998872  11122222            12466777777777332211112222344446


Q ss_pred             CCCEEeCCCCcCccC-----CCccccCCCCCcEEEccceeeeee---cCcccccCCCCCCEEeccCCcceeecCcccc--
Q 040699          137 HLQELYMADNDLRGS-----LPWCLANMTSLRILYVSYNQLTGS---ISSSPLVHLTSIEKLYLSNNHFRIPISLEPL--  206 (689)
Q Consensus       137 ~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--  206 (689)
                      +|+++.+..|.|.-.     .-..+..+.+|+.||+.+|-++..   +-..++...+.|+.|.+.+|-++.......+  
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            777888877766411     111234567788888888877621   1111344456677788777766533222111  


Q ss_pred             ---cCCCCcceeeccCCccc
Q 040699          207 ---FNHSRLKIFYADNNELN  223 (689)
Q Consensus       207 ---~~l~~L~~L~l~~n~~~  223 (689)
                         ...++|..|...+|.+.
T Consensus       266 f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhhhcCCCccccccchhhhc
Confidence               12355566666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.09  E-value=2e-06  Score=94.22  Aligned_cols=153  Identities=24%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             CCCCEEECCCCCCCCcchh-HHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCC
Q 040699           31 TNLEYLSLDFSSLHISLLQ-SIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPS  109 (689)
Q Consensus        31 ~~L~~L~L~~~~i~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~  109 (689)
                      .+|++|++++...-...++ .++.++|.|+.|.+++-.+....-.....++++|+.||+|++++   ..+ ..+.. +++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl-~GIS~-Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNL-SGISR-LKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCc-HHHhc-ccc
Confidence            4566666665433333233 55555666666666654443221111334556666666666665   111 44444 666


Q ss_pred             ccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCC------CccccCCCCCcEEEccceeeeeecCccccc
Q 040699          110 LKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL------PWCLANMTSLRILYVSYNQLTGSISSSPLV  182 (689)
Q Consensus       110 L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  182 (689)
                      |+.|.+.+- +...  ..+  ..+-+|++|++||+|........      -+.-..+|+||.||.|++.+.+.+-...+.
T Consensus       197 Lq~L~mrnLe~e~~--~~l--~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  197 LQVLSMRNLEFESY--QDL--IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             HHHHhccCCCCCch--hhH--HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            666665543 1110  001  13455666666666655443211      112234778888888887776554443333


Q ss_pred             CCCCCCEEec
Q 040699          183 HLTSIEKLYL  192 (689)
Q Consensus       183 ~l~~L~~L~l  192 (689)
                      ..++|+.+.+
T Consensus       273 sH~~L~~i~~  282 (699)
T KOG3665|consen  273 SHPNLQQIAA  282 (699)
T ss_pred             hCccHhhhhh
Confidence            4445554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.03  E-value=1.3e-05  Score=69.12  Aligned_cols=122  Identities=20%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             cccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCC
Q 040699          355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS  434 (689)
Q Consensus       355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  434 (689)
                      +|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            344444445444443 233 444444444444555554442 4444444444444455555443 222233334444555


Q ss_pred             CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCC
Q 040699          435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLL  483 (689)
Q Consensus       435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  483 (689)
                      |+.+++..+ +......+|.+. .++.+.+.. .+..+....|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555555433 332333344443 555554443 2222333444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=1.1e-06  Score=96.17  Aligned_cols=200  Identities=22%  Similarity=0.195  Sum_probs=122.8

Q ss_pred             CCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcc--------hhHHh------hcCCCCcEEECCCCcCCcc
Q 040699            6 SLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISL--------LQSIA------SIFPSLKNLSMSGCEVNGL   71 (689)
Q Consensus         6 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~--------~~~~~------~~l~~L~~L~Ls~n~l~~~   71 (689)
                      +++..++.+.....  ...+.+.... |++|.|.+-......        +..+.      ..-.+|++|++++......
T Consensus        61 ~ltki~l~~~~~~~--~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~  137 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQH--QTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN  137 (699)
T ss_pred             eeEEeeccceecch--hHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence            34556665554443  3334444444 888888753211111        11111      1126899999988643211


Q ss_pred             -cCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc
Q 040699           72 -VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG  150 (689)
Q Consensus        72 -~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~  150 (689)
                       .+...-..+|+|++|.+++-.+  ...-...+..++|+|..||+|++.+..    +  ..++++++|++|.+.+-.+..
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~n----l--~GIS~LknLq~L~mrnLe~e~  209 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISN----L--SGISRLKNLQVLSMRNLEFES  209 (699)
T ss_pred             cHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccC----c--HHHhccccHHHHhccCCCCCc
Confidence             1111123579999999998877  334356677779999999999985554    4  368899999999998876653


Q ss_pred             -CCCccccCCCCCcEEEccceeeeeecCc------ccccCCCCCCEEeccCCcceeecCcccccCCCCcceeec
Q 040699          151 -SLPWCLANMTSLRILYVSYNQLTGSISS------SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYA  217 (689)
Q Consensus       151 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  217 (689)
                       ..-..+.++++|++||+|..+.. ..+.      .--..+|+|+.||.+++.+....-..-+...++|+....
T Consensus       210 ~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  210 YQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             hhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence             22235668999999999987654 2111      012348899999999987764333222333455555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.00  E-value=1.6e-05  Score=68.50  Aligned_cols=125  Identities=22%  Similarity=0.259  Sum_probs=51.4

Q ss_pred             ChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccC
Q 040699          328 PLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFN  407 (689)
Q Consensus       328 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  407 (689)
                      +...+..+++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++..+|.++++++.+.+.+ .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            334444445555555553 344444455666656666666553 43 55555666565666666644 444444455555


Q ss_pred             CCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCC
Q 040699          408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL  459 (689)
Q Consensus       408 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  459 (689)
                      +++|+.+.+..+ +.......|.++ +|+.+.+.. .+......+|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666666544 444444556665 666666654 3333444555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.98  E-value=5.2e-07  Score=74.11  Aligned_cols=131  Identities=21%  Similarity=0.273  Sum_probs=91.7

Q ss_pred             CCcEEEcCCCccccCCccccc---CCCCCcEEeccccccccccccCCCcccCCCchhhcc-ccccceEeccCcccccCCc
Q 040699          458 RLQYIIMPNNHLEGPIPVEFC---QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN-LTRIQTLNLSHNDLTGSIP  533 (689)
Q Consensus       458 ~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~  533 (689)
                      -+..++|+.|++. -+++...   ....|+..+|++|.+.            ..|+.|.. .+..+.|++++|.++ .+|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk------------~fp~kft~kf~t~t~lNl~~neis-dvP   93 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK------------KFPKKFTIKFPTATTLNLANNEIS-DVP   93 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh------------hCCHHHhhccchhhhhhcchhhhh-hch
Confidence            4556788888765 2344433   4455666788888876            56776655 458999999999999 566


Q ss_pred             ccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccC-cccccCCcCCCCCC
Q 040699          534 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFN-ENSYEGNTFLCGLP  605 (689)
Q Consensus       534 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~-~~~~~~n~~~c~~~  605 (689)
                      ..+..++.|+.|+++.|++. ..|..+..+.+|..||..+|... .+|-.. ..++.. -+.+..+||--+|+
T Consensus        94 eE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen   94 EELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL-FYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             HHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH-hccccHHHHHhcCCcccccCc
Confidence            67999999999999999998 67888888999999999999765 333321 122222 23445556655544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=1.5e-05  Score=52.94  Aligned_cols=38  Identities=34%  Similarity=0.378  Sum_probs=27.8

Q ss_pred             CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHI   45 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~   45 (689)
                      ++|++|++++|+|++   ++..+.+|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD---LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc---cCchHhCCCCCCEEEecCCCCCC
Confidence            578888888888876   45567888888888888888774

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.92  E-value=1.3e-05  Score=70.84  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=74.0

Q ss_pred             CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699            8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD   87 (689)
Q Consensus         8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~   87 (689)
                      +++||.+.++..++.+.   .-......+||+.|.+..  ++.+.. +++|..|.+++|+|+.+.+. --.-+++|..|.
T Consensus        22 ~e~~LR~lkip~ienlg---~~~d~~d~iDLtdNdl~~--l~~lp~-l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~   94 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLG---ATLDQFDAIDLTDNDLRK--LDNLPH-LPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLI   94 (233)
T ss_pred             cccccccccccchhhcc---ccccccceecccccchhh--cccCCC-ccccceEEecCCcceeeccc-hhhhccccceEE
Confidence            46677776665532211   113456667777776654  344555 67777888888877754432 223346677777


Q ss_pred             CCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCC
Q 040699           88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADN  146 (689)
Q Consensus        88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n  146 (689)
                      +.+|++-.-+.+ ..+.. ||.|++|.+-+|....... --...+..+|+|++||.++-
T Consensus        95 LtnNsi~~l~dl-~pLa~-~p~L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   95 LTNNSIQELGDL-DPLAS-CPKLEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcchhhhhhc-chhcc-CCccceeeecCCchhcccC-ceeEEEEecCcceEeehhhh
Confidence            777776211222 12223 7788888777773322111 11134678888888888754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=2e-05  Score=69.71  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=79.8

Q ss_pred             hhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCccccc
Q 040699          103 IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV  182 (689)
Q Consensus       103 ~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  182 (689)
                      ++....+...+||++|.+..    +  ..|..++.|.+|.|++|+|+.+.|.--..+++|+.|.+.+|.|...-.-..+.
T Consensus        37 lg~~~d~~d~iDLtdNdl~~----l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa  110 (233)
T KOG1644|consen   37 LGATLDQFDAIDLTDNDLRK----L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA  110 (233)
T ss_pred             ccccccccceecccccchhh----c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence            33335567788888874433    3  25778889999999999999777776667788999999999887322223467


Q ss_pred             CCCCCCEEeccCCcceeec--CcccccCCCCcceeeccCC
Q 040699          183 HLTSIEKLYLSNNHFRIPI--SLEPLFNHSRLKIFYADNN  220 (689)
Q Consensus       183 ~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n  220 (689)
                      .++.|++|.+-+|+.+...  -...+..+++|+.||+..-
T Consensus       111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7889999999988876211  1223567788888887764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=1.9e-05  Score=52.52  Aligned_cols=36  Identities=42%  Similarity=0.756  Sum_probs=17.9

Q ss_pred             ccceEeccCcccccCCcccccCCCCCCEEeCcCCcCC
Q 040699          517 RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN  553 (689)
Q Consensus       517 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  553 (689)
                      +|++|++++|+++. +|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            45555555555552 3334555555555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00014  Score=73.47  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=27.0

Q ss_pred             CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCC
Q 040699          335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN  395 (689)
Q Consensus       335 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  395 (689)
                      +.+++.|++++|.++. +|.   -..+|+.|.++++.-...+|..+   .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence            3566666666665552 331   12346666666543322444332   235556666555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00025  Score=71.72  Aligned_cols=32  Identities=28%  Similarity=0.235  Sum_probs=16.0

Q ss_pred             CCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCC
Q 040699          433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN  467 (689)
Q Consensus       433 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  467 (689)
                      ++|++|++++|... ..|..+.  .+|++|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            35666666655543 2333222  45666665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.37  E-value=0.00011  Score=68.17  Aligned_cols=107  Identities=27%  Similarity=0.269  Sum_probs=49.2

Q ss_pred             CCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCC--cCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcC
Q 040699           30 FTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC--EVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM  107 (689)
Q Consensus        30 ~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l  107 (689)
                      +..|+.|++.+..++.  +..+.. +|+|++|.++.|  ++.+.... ....+++|++|++++|++.. -.....+.. +
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~-Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~-lstl~pl~~-l  115 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPK-LPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD-LSTLRPLKE-L  115 (260)
T ss_pred             ccchhhhhhhccceee--cccCCC-cchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc-ccccchhhh-h
Confidence            4445555555444433  233444 566666666666  33322211 23344666666666666521 111122222 5


Q ss_pred             CCccEEECCCCCCCCCCCccCccccCCCCCCCEEeC
Q 040699          108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYM  143 (689)
Q Consensus       108 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L  143 (689)
                      .+|..|++.+|.... ..+-....|.-+++|++|+=
T Consensus       116 ~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence            566666666662111 11111223555666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.01  E-value=0.00014  Score=78.73  Aligned_cols=112  Identities=31%  Similarity=0.325  Sum_probs=64.7

Q ss_pred             CCCCCEEeCCCCC-CCCccccchhhcCCCCCCEEECCCC--CCCCcc--hhHHhhcCCCCcEEECCCCc-CCcccCCCCC
Q 040699            4 FPSLNTLYLLFNN-FTDIATTAQELHSFTNLEYLSLDFS--SLHISL--LQSIASIFPSLKNLSMSGCE-VNGLVRGQGF   77 (689)
Q Consensus         4 l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~L~~L~L~~~--~i~~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~   77 (689)
                      +++|+.|.+.++. +.. +.+......+++|+.|+++.+  .+....  ...+...+++|+.|+++++. +++..-....
T Consensus       187 ~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITD-DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCCh-hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            5677777777663 332 123455667778888888763  111111  12344446777888887776 4322111111


Q ss_pred             CCCCCCCeeeCCCCc-cccCCccchhhhhcCCCccEEECCCC
Q 040699           78 PHFKSLEHLDMSSTR-IALNTSFLQIIGESMPSLKYLSLSNS  118 (689)
Q Consensus        78 ~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~l~~L~~L~Ls~~  118 (689)
                      ..+++|++|.+..+. +  ++.....+...++.|+.|+++.|
T Consensus       266 ~~c~~L~~L~l~~c~~l--t~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNL--TDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             hhCCCcceEccCCCCcc--chhHHHHHHHhcCcccEEeeecC
Confidence            236777777766665 4  44445555555777888888877

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.94  E-value=9.5e-05  Score=80.17  Aligned_cols=138  Identities=26%  Similarity=0.249  Sum_probs=91.2

Q ss_pred             hcCCCCCCEEECCCC-CCCCcchhHHhhcCCCCcEEECCCC-cCCcccC---CCCCCCCCCCCeeeCCCCc-cccCCccc
Q 040699           27 LHSFTNLEYLSLDFS-SLHISLLQSIASIFPSLKNLSMSGC-EVNGLVR---GQGFPHFKSLEHLDMSSTR-IALNTSFL  100 (689)
Q Consensus        27 ~~~~~~L~~L~L~~~-~i~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~~~~  100 (689)
                      ...++.|+.|.+..+ .+....+..+...++.|+.|+++++ ......+   ......+++|+.|+++++. +  ++...
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--sd~~l  261 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--TDIGL  261 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc--CchhH
Confidence            345899999999987 5555445555555999999999973 2111111   1134567899999999988 6  55566


Q ss_pred             hhhhhcCCCccEEECCCCC-CCCCCCccCccccCCCCCCCEEeCCCCcCcc--CCCccccCCCCCcEEEccc
Q 040699          101 QIIGESMPSLKYLSLSNST-RGTNSSRILDQGLCSLMHLQELYMADNDLRG--SLPWCLANMTSLRILYVSY  169 (689)
Q Consensus       101 ~~~~~~l~~L~~L~Ls~~~-~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~  169 (689)
                      ..+...+++|+.|.+.+|. ....+  +. .....++.|++|+++++....  .......++++|+.|.+..
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~g--l~-~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEG--LV-SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhH--HH-HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            6666669999999988884 22211  22 245678999999999886531  1222344577766655433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.83  E-value=6.4e-05  Score=69.84  Aligned_cols=105  Identities=24%  Similarity=0.254  Sum_probs=62.3

Q ss_pred             CCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchh-hhhcC
Q 040699           29 SFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQI-IGESM  107 (689)
Q Consensus        29 ~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~l  107 (689)
                      .+.+.+.|+.=+|.+++.   +++..|+.|++|.||-|.|+...   .+..|++|++|+|..|.|.   .+.+. -..++
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~---sldEL~YLknl   87 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIE---SLDELEYLKNL   87 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccc---cHHHHHHHhcC
Confidence            355667777777777653   33444778888888887776442   4677788888888777772   22111 12347


Q ss_pred             CCccEEECCCCCC-CCCCCccCccccCCCCCCCEEe
Q 040699          108 PSLKYLSLSNSTR-GTNSSRILDQGLCSLMHLQELY  142 (689)
Q Consensus       108 ~~L~~L~Ls~~~~-~~~~~~~~~~~l~~l~~L~~L~  142 (689)
                      |+|+.|.|..|.. +..+..--...+.-+|+|+.||
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7788887777622 2211111122456677777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.00074  Score=62.79  Aligned_cols=83  Identities=18%  Similarity=0.234  Sum_probs=40.7

Q ss_pred             CccEEeccCCcccccccccccCCCCCCEEECCCC--CCCCcCChhhcCCCCCcEEEcCCCccccC-CcccccCCCCCcEE
Q 040699          410 NLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN--NLSGKIPRWLGDLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQIL  486 (689)
Q Consensus       410 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  486 (689)
                      .|+.|++.+..++..  ..|..+++|+.|.++.|  ++.+.++.....+++|+++++++|++... .-.....+.+|..|
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            344444444433322  23445556666666666  44444444444446666666666665521 00113344556666


Q ss_pred             eccccccc
Q 040699          487 DISDNNIS  494 (689)
Q Consensus       487 ~l~~n~~~  494 (689)
                      ++.+|..+
T Consensus       122 dl~n~~~~  129 (260)
T KOG2739|consen  122 DLFNCSVT  129 (260)
T ss_pred             hcccCCcc
Confidence            66666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.00011  Score=68.35  Aligned_cols=102  Identities=20%  Similarity=0.184  Sum_probs=67.8

Q ss_pred             CCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCC
Q 040699            4 FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSL   83 (689)
Q Consensus         4 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L   83 (689)
                      +.+.+.|+.=++.+.++    .....|+.|++|.|+-|+|+.  +..+.+ |++|+.|.|..|.|.+......+.++++|
T Consensus        18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIss--L~pl~r-CtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISS--LAPLQR-CTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHH----HHHHhcccceeEEeecccccc--chhHHH-HHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            44566777777777763    335677888888888887775  566666 78888888888877655444456777888


Q ss_pred             CeeeCCCCccccCCccc----hhhhhcCCCccEEE
Q 040699           84 EHLDMSSTRIALNTSFL----QIIGESMPSLKYLS  114 (689)
Q Consensus        84 ~~L~L~~~~~~~~~~~~----~~~~~~l~~L~~L~  114 (689)
                      |.|.|..|.-  .+...    ..+...+|+|++||
T Consensus        91 r~LWL~ENPC--c~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPC--CGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCc--ccccchhHHHHHHHHcccchhcc
Confidence            8888877653  12211    22334477777775

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.13  E-value=0.00021  Score=75.12  Aligned_cols=271  Identities=22%  Similarity=0.219  Sum_probs=137.8

Q ss_pred             CCCCCCcCEEEccCCcCcccCChhhhhcC----CCceEEEccCCcCCcc----ccccccCCCCCcEEeccCCccccc---
Q 040699          307 IHSHKRLGMLDISNNNFRGHIPLEIGDIL----PSLHVFNISMNALDGS----IPSSFGNMNFLRILDLSNNQLTGE---  375 (689)
Q Consensus       307 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---  375 (689)
                      +...+.|+.|++++|.+.+..-......+    ..++.|.+..|.++..    +...+.....++.++++.|.+...   
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            33445555566666555422221121111    2344555555655432    233444566677777777765311   


Q ss_pred             -chhhh---hcCCCCCCEEEccCCcCCccCc----ccccCCCC-ccEEeccCCccccc----ccccccCC-CCCCEEECC
Q 040699          376 -IPEHL---AVGCVNLESLVLSNNSLKGHMF----SRNFNLAN-LMSLQLEGNHFIGE----ISQSLSKC-SSLEGLFLN  441 (689)
Q Consensus       376 -~~~~~---~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~-L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~L~  441 (689)
                       ++...   +....++++|++.+|.++....    ..+...+. +..|++..|++...    ....+..+ ..+++++++
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS  270 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence             11111   1124567777777776653211    22333444 66678887776432    22334455 567888888


Q ss_pred             CCCCCCcC----ChhhcCCCCCcEEEcCCCccccCCc----ccccCCCCCcEEeccccccccc-----------------
Q 040699          442 NNNLSGKI----PRWLGDLTRLQYIIMPNNHLEGPIP----VEFCQLDLLQILDISDNNISGR-----------------  496 (689)
Q Consensus       442 ~n~i~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~-----------------  496 (689)
                      .|.|+...    ...+..+++++++.+++|.+.....    ........+..+.+.++..-..                 
T Consensus       271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  350 (478)
T KOG4308|consen  271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLS  350 (478)
T ss_pred             cCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhH
Confidence            88877433    3445566778888888887653211    1122223444444444332211                 


Q ss_pred             -cccCCCcccCC----Cchhhcccc-ccceEeccCccccc----CCcccccCCCCCCEEeCcCCcCCCCCchhc-----c
Q 040699          497 -LDLSCNKLIGP----IPPKIGNLT-RIQTLNLSHNDLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQL-----V  561 (689)
Q Consensus       497 -l~ls~n~l~~~----~~~~~~~l~-~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~  561 (689)
                       .+.+.+.....    ......+.+ .+..+++..+.+.+    .++..+.....++.++++.|......+..+     .
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~  430 (478)
T KOG4308|consen  351 ELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSR  430 (478)
T ss_pred             HHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhh
Confidence             11222211100    001112222 25556666655543    233445667888999999988765444332     2


Q ss_pred             CCCCCCEEeccCCcCcC
Q 040699          562 ELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       562 ~l~~L~~L~l~~N~l~~  578 (689)
                      +. .++.++++.|+++.
T Consensus       431 ~~-~~~~~~l~~~~~~~  446 (478)
T KOG4308|consen  431 NG-SLKALRLSRNPITA  446 (478)
T ss_pred             cc-cchhhhhccChhhh
Confidence            34 78888889888764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.57  E-value=0.017  Score=31.67  Aligned_cols=12  Identities=50%  Similarity=0.725  Sum_probs=6.0

Q ss_pred             cceEeccCcccc
Q 040699          518 IQTLNLSHNDLT  529 (689)
Q Consensus       518 L~~L~L~~n~l~  529 (689)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444555555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.16  E-value=0.021  Score=31.34  Aligned_cols=20  Identities=45%  Similarity=0.697  Sum_probs=13.1

Q ss_pred             CCCEEeCcCCcCCCCCchhcc
Q 040699          541 HVESLDLSNNKLNGKIPHQLV  561 (689)
Q Consensus       541 ~L~~L~L~~N~l~~~~~~~~~  561 (689)
                      +|++||+++|+++ .+|..|.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4677777777777 5555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.95  E-value=0.0005  Score=72.37  Aligned_cols=190  Identities=25%  Similarity=0.217  Sum_probs=85.1

Q ss_pred             CCEEECCCCCCCCcchhHHhh---cCCCCcEEECCCCcCCcccC---CCCCCCC-CCCCeeeCCCCccccC--Cccchhh
Q 040699           33 LEYLSLDFSSLHISLLQSIAS---IFPSLKNLSMSGCEVNGLVR---GQGFPHF-KSLEHLDMSSTRIALN--TSFLQII  103 (689)
Q Consensus        33 L~~L~L~~~~i~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~---~~~~~~l-~~L~~L~L~~~~~~~~--~~~~~~~  103 (689)
                      +..|.|.+|.+.......+..   ..+.|+.|++++|.+.+.-.   ...+... ..|++|++..|.++..  ..+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            445555555555443332221   23445555555555431100   0011221 3445555555554211  1122223


Q ss_pred             hhcCCCccEEECCCCCCCCCCCccCccccC----CCCCCCEEeCCCCcCccC----CCccccCCCC-CcEEEccceeeee
Q 040699          104 GESMPSLKYLSLSNSTRGTNSSRILDQGLC----SLMHLQELYMADNDLRGS----LPWCLANMTS-LRILYVSYNQLTG  174 (689)
Q Consensus       104 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~  174 (689)
                      .. ...++.++++.|.............+.    ...++++|.+++|.++..    ....+...++ +..|++..|++.+
T Consensus       169 ~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            33 455556666655221111111111222    355666677766665521    1122334444 5556676666542


Q ss_pred             e----cCcccccCC-CCCCEEeccCCcceeecC---cccccCCCCcceeeccCCcccc
Q 040699          175 S----ISSSPLVHL-TSIEKLYLSNNHFRIPIS---LEPLFNHSRLKIFYADNNELNA  224 (689)
Q Consensus       175 ~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~  224 (689)
                      .    ..+ .+..+ ..+++++++.|.++....   ...+..++.++.+.+..|.+..
T Consensus       248 ~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2    111 12233 456677777777653211   1224455677777777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=0.0094  Score=53.32  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=15.6

Q ss_pred             CCEEECCCCCCCCcchhHHhhcCCCCcEEECCCC
Q 040699           33 LEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC   66 (689)
Q Consensus        33 L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n   66 (689)
                      ++.++-+++.|..+++..+.. ++.++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhc-cchhhhheeccc
Confidence            344444444444444444444 444555554444

>TIGR00864 PCC polycystin cation channel protein

Probab=92.97  E-value=0.09  Score=65.08  Aligned_cols=77  Identities=14%  Similarity=0.095  Sum_probs=53.2

Q ss_pred             eCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCC
Q 040699          546 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNER  624 (689)
Q Consensus       546 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~  624 (689)
                      ||++|+|+.+.++.|..+++|+.|+|++||+.|.|.- |+..+..-.....      -......|..|...+++++.++.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v------~~~~~i~CasP~~LrG~~L~~l~   74 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKV------RQPEAALCAGPGALAGQPLLGIP   74 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccc------cCCcccCCCCChHHCCCCcccCC
Confidence            6889999988888899999999999999999998864 3332221111110      00112268889888888888777


Q ss_pred             CCCc
Q 040699          625 DDNL  628 (689)
Q Consensus       625 ~~~~  628 (689)
                      .+++
T Consensus        75 ~~d~   78 (2740)
T TIGR00864        75 LLDS   78 (2740)
T ss_pred             cccC
Confidence            6554

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.79  E-value=0.0085  Score=54.64  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=28.2

Q ss_pred             hccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCc
Q 040699          512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN  575 (689)
Q Consensus       512 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  575 (689)
                      |+-++.|..|+++.|.+. ..|..++++..++.+++.+|..+ ..|..+...+.++.+++.+|+
T Consensus        61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence            333444444444444444 33444444444444444444444 334444444444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.40  E-value=0.27  Score=28.14  Aligned_cols=16  Identities=44%  Similarity=0.630  Sum_probs=9.1

Q ss_pred             CCCCEEeCcCCcCCCC
Q 040699          540 KHVESLDLSNNKLNGK  555 (689)
Q Consensus       540 ~~L~~L~L~~N~l~~~  555 (689)
                      ++|++|+|++|+|..+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.40  E-value=0.27  Score=28.14  Aligned_cols=16  Identities=44%  Similarity=0.630  Sum_probs=9.1

Q ss_pred             CCCCEEeCcCCcCCCC
Q 040699          540 KHVESLDLSNNKLNGK  555 (689)
Q Consensus       540 ~~L~~L~L~~N~l~~~  555 (689)
                      ++|++|+|++|+|..+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.21  E-value=0.21  Score=28.66  Aligned_cols=23  Identities=35%  Similarity=0.637  Sum_probs=15.7

Q ss_pred             ccccceEeccCcccccCCccccc
Q 040699          515 LTRIQTLNLSHNDLTGSIPSTFS  537 (689)
Q Consensus       515 l~~L~~L~L~~n~l~~~~~~~~~  537 (689)
                      +++|+.|+|++|+++.+.+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35678888888888766555553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.21  E-value=0.21  Score=28.66  Aligned_cols=23  Identities=35%  Similarity=0.637  Sum_probs=15.7

Q ss_pred             ccccceEeccCcccccCCccccc
Q 040699          515 LTRIQTLNLSHNDLTGSIPSTFS  537 (689)
Q Consensus       515 l~~L~~L~L~~n~l~~~~~~~~~  537 (689)
                      +++|+.|+|++|+++.+.+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35678888888888766555553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.48  E-value=0.24  Score=25.11  Aligned_cols=11  Identities=82%  Similarity=1.093  Sum_probs=3.6

Q ss_pred             CcEEeccCCcc
Q 040699          362 LRILDLSNNQL  372 (689)
Q Consensus       362 L~~L~l~~n~l  372 (689)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.45  E-value=0.047  Score=49.03  Aligned_cols=80  Identities=19%  Similarity=0.203  Sum_probs=36.1

Q ss_pred             CCEEEccCCcCCccCcccccCCCCccEEeccCCccccc-ccccc-cCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEE
Q 040699          387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE-ISQSL-SKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYII  463 (689)
Q Consensus       387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~  463 (689)
                      ++.++-++..|..+....+.++++++.|.+.+|+-.+. .-+.+ .-.++|+.|++++| +|+...-.++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            34444444444444444444455555555555442111 00001 12345666666655 44444444555555555555


Q ss_pred             cCC
Q 040699          464 MPN  466 (689)
Q Consensus       464 l~~  466 (689)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.07  E-value=0.027  Score=51.48  Aligned_cols=87  Identities=17%  Similarity=0.241  Sum_probs=62.7

Q ss_pred             hcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCC
Q 040699          453 LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSI  532 (689)
Q Consensus       453 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  532 (689)
                      +......+.||++.|++. -.-.-|+-++.|..||++.|.+.            ..|..+.....++.+++..|..+ ..
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~------------~~~~d~~q~~e~~~~~~~~n~~~-~~  103 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK------------FLPKDAKQQRETVNAASHKNNHS-QQ  103 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh------------hChhhHHHHHHHHHHHhhccchh-hC
Confidence            334456667777777665 33344666677777777777765            67777777778888888888877 67


Q ss_pred             cccccCCCCCCEEeCcCCcCC
Q 040699          533 PSTFSNLKHVESLDLSNNKLN  553 (689)
Q Consensus       533 ~~~~~~l~~L~~L~L~~N~l~  553 (689)
                      |.+++..++++++++-.|.+.
T Consensus       104 p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  104 PKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             CccccccCCcchhhhccCcch
Confidence            778888888888888888765

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=86.23  E-value=3.9  Score=42.05  Aligned_cols=190  Identities=15%  Similarity=0.038  Sum_probs=89.4

Q ss_pred             CCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCC--CCCCCCCCCeeeCCCCccccCCccchhhhh--c
Q 040699           31 TNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQ--GFPHFKSLEHLDMSSTRIALNTSFLQIIGE--S  106 (689)
Q Consensus        31 ~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~--~  106 (689)
                      +.+++++++.|.+....-..+..  +-. -++++.|..+......  .-+.=..+.+++++.|..  .+.++..+..  .
T Consensus       165 pr~r~~dls~npi~dkvpihl~~--p~~-pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~--Kddip~~~n~~a~  239 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPIHLPQ--PGN-PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGG--KDDIPRTLNKKAG  239 (553)
T ss_pred             chhhhhccCCCcccccCCccccC--CCC-ccchhhhhhhhhHHHHhhhhhccccccccccccCCC--CccchhHHHHhhh
Confidence            45777888877766552223332  111 1566666554221000  001114577888888776  4444443321  1


Q ss_pred             CCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc--------CCCccccCCCCCcEEEccceeeeeecCc
Q 040699          107 MPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG--------SLPWCLANMTSLRILYVSYNQLTGSISS  178 (689)
Q Consensus       107 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~  178 (689)
                      -.-++.++.+......... ..+...+.-+++++.+++.|..+.        ..-+.|..-+++ +|++..++...+-+.
T Consensus       240 ~~vl~~ld~s~tgirlD~l-~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lk  317 (553)
T KOG4242|consen  240 TLVLFKLDRSTTGIRLDLL-TSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLK  317 (553)
T ss_pred             hhhhhcccccccccchhhc-ccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhh
Confidence            2346666666651111000 111134455678888887775532        122345555566 777766654422221


Q ss_pred             ccccCC-----CCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccccc
Q 040699          179 SPLVHL-----TSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEIT  227 (689)
Q Consensus       179 ~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  227 (689)
                      ..+-.+     +.=-.+++..|........+.-.+-..++++....|...++..
T Consensus       318 s~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~  371 (553)
T KOG4242|consen  318 SMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGG  371 (553)
T ss_pred             hhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccc
Confidence            111111     1112455555554422222222223457777777777765443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.12  E-value=0.68  Score=26.53  Aligned_cols=17  Identities=29%  Similarity=0.364  Sum_probs=12.9

Q ss_pred             CCCCCEEeCCCCCCCCc
Q 040699            4 FPSLNTLYLLFNNFTDI   20 (689)
Q Consensus         4 l~~L~~L~Ls~n~i~~~   20 (689)
                      +++|++|+|++|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            46788888888887764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.38  E-value=0.31  Score=27.25  Aligned_cols=14  Identities=50%  Similarity=0.570  Sum_probs=5.3

Q ss_pred             CCCCEEeCCCCCCC
Q 040699            5 PSLNTLYLLFNNFT   18 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~   18 (689)
                      ++|++|+|++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444444444433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	689
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-34
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-24
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-34
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-24
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		4e-04
2wqx_A	289	Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutan		4e-04
2y5q_A	362	Listeria Monocytogenes Inlb (Internalin B) Residues		8e-04
2uzx_A	289	Structure Of The Human Receptor Tyrosine Kinase Met		9e-04
1h6t_A	291	Internalin B: Crystal Structure Of Fused N-Terminal		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 185/668 (27%), Positives = 280/668 (41%), Gaps = 118/668 (17%)
Query: 37  SLDFS----SLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR 92
           SLD S    S  ++ L S+ S    LK L++S   ++   +  G     SLE LD+S+  
Sbjct: 101 SLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 159
Query: 93  IALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL 152
           I+       ++ +    LK+L++S    G   S  +D   C  ++L+ L ++ N+    +
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNLEFLDVSSNNFSTGI 213
Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRL 212
           P+ L + ++L+ L +S N+L+G  S + +   T ++ L +S+N F  PI   PL     L
Sbjct: 214 PF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSL 268
Query: 213 KIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF--------------- 257
           +      N+   EI     L+     L+ L LS ++  G + P F               
Sbjct: 269 QYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 258 ---------LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPF--RLP 306
                    L     L+  DLS  + +GE P  L   +  L  L L +++ +GP    L 
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDI--LPSLHVFNISMNALDGSIPSSFGNMNFLRI 364
            +    L  L + NN F G IP  + +   L SLH   +S N L G+IPSS G+++ LR 
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSLSKLRD 443
Query: 365 LDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGE 424
           L L  N L GEIP+ L                  G + S   N  NL  + L  N   GE
Sbjct: 444 LKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 425 ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXX 484
           I + + +  +L  L L+NN+ SG IP  LGD   L ++ +  N   G IP          
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQ 558
Query: 485 XXXXSDNNISGR---------LDLSC-----------------NKLI------------- 505
               + N I+G+         +   C                 N+L              
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 506 GPIPPKIGNLTRIQTLNLSHNDL------------------------TGSIPSTFSNLKH 541
           G   P   N   +  L++S+N L                        +GSIP    +L+ 
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 542 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFL 601
           +  LDLS+NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF    +  N  L
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 737
Query: 602 CGLPLPIC 609
           CG PLP C
Sbjct: 738 CGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 215/475 (45%), Gaps = 51/475 (10%)
Query: 142 YMADNDLRGSLPW--CLANMTSLRILYVSYNQLTGSISS-SPLVHLTSIEKLYLSNNHFR 198
           +++++ + GS+    C A++TSL +   S N L+G +++ + L   + ++ L +S+N   
Sbjct: 80  FLSNSHINGSVSGFKCSASLTSLDL---SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 136
Query: 199 IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFL 258
            P  +      + L++     N ++        L+    +L  L++S +   G +    +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---V 193
Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDI 318
               +LE+ D+S    +   P   L + + L+ L +  + L+G F   I +   L +L+I
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 319 SNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF-GNMNFLRILDLSNNQLTGEIP 377
           S+N F G IP      L SL   +++ N   G IP    G  + L  LDLS N   G +P
Sbjct: 252 SSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 378 EHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLE 436
                                          + L SL L  N+F GE+   +L K   L+
Sbjct: 309 PFFGS-------------------------CSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 437 GLFLNNNNLSGKIPRWLGDLTR-LQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISG 495
            L L+ N  SG++P  L +L+  L  + + +N+  GPI    C          +  N   
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---------NPKNTLQ 394
Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
            L L  N   G IPP + N + + +L+LS N L+G+IPS+  +L  +  L L  N L G+
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 556 IPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICR 610
           IP +L+ +KTLE   + +N+L+GEIP   +     N  S   N     +P  I R
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 185/668 (27%), Positives = 280/668 (41%), Gaps = 118/668 (17%)
Query: 37  SLDFS----SLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTR 92
           SLD S    S  ++ L S+ S    LK L++S   ++   +  G     SLE LD+S+  
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 93  IALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL 152
           I+       ++ +    LK+L++S    G   S  +D   C  ++L+ L ++ N+    +
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNLEFLDVSSNNFSTGI 216
Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRL 212
           P+ L + ++L+ L +S N+L+G  S + +   T ++ L +S+N F  PI   PL     L
Sbjct: 217 PF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSL 271
Query: 213 KIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF--------------- 257
           +      N+   EI     L+     L+ L LS ++  G + P F               
Sbjct: 272 QYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 258 ---------LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPF--RLP 306
                    L     L+  DLS  + +GE P  L   +  L  L L +++ +GP    L 
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDI--LPSLHVFNISMNALDGSIPSSFGNMNFLRI 364
            +    L  L + NN F G IP  + +   L SLH   +S N L G+IPSS G+++ LR 
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSLSKLRD 446
Query: 365 LDLSNNQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGE 424
           L L  N L GEIP+ L                  G + S   N  NL  + L  N   GE
Sbjct: 447 LKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 425 ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCXXXXXX 484
           I + + +  +L  L L+NN+ SG IP  LGD   L ++ +  N   G IP          
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQ 561
Query: 485 XXXXSDNNISGR---------LDLSC-----------------NKLI------------- 505
               + N I+G+         +   C                 N+L              
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 506 GPIPPKIGNLTRIQTLNLSHNDL------------------------TGSIPSTFSNLKH 541
           G   P   N   +  L++S+N L                        +GSIP    +L+ 
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 542 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFL 601
           +  LDLS+NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF    +  N  L
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 740
Query: 602 CGLPLPIC 609
           CG PLP C
Sbjct: 741 CGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 215/475 (45%), Gaps = 51/475 (10%)
Query: 142 YMADNDLRGSLPW--CLANMTSLRILYVSYNQLTGSISS-SPLVHLTSIEKLYLSNNHFR 198
           +++++ + GS+    C A++TSL +   S N L+G +++ + L   + ++ L +S+N   
Sbjct: 83  FLSNSHINGSVSGFKCSASLTSLDL---SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
Query: 199 IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFL 258
            P  +      + L++     N ++        L+    +L  L++S +   G +    +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---V 196
Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDI 318
               +LE+ D+S    +   P   L + + L+ L +  + L+G F   I +   L +L+I
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 319 SNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF-GNMNFLRILDLSNNQLTGEIP 377
           S+N F G IP      L SL   +++ N   G IP    G  + L  LDLS N   G +P
Sbjct: 255 SSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 378 EHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLE 436
                                          + L SL L  N+F GE+   +L K   L+
Sbjct: 312 PFFGS-------------------------CSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 437 GLFLNNNNLSGKIPRWLGDLTR-LQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISG 495
            L L+ N  SG++P  L +L+  L  + + +N+  GPI    C          +  N   
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---------NPKNTLQ 397
Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
            L L  N   G IPP + N + + +L+LS N L+G+IPS+  +L  +  L L  N L G+
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 556 IPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICR 610
           IP +L+ +KTLE   + +N+L+GEIP   +     N  S   N     +P  I R
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 129/301 (42%), Gaps = 42/301 (13%)
Query: 312 RLGMLDISNNNFRGHIPLEIGDI-LPSLHVFNIS-MNALDGSIPSSFGNMNFLRILDLSN 369
           R+  LD+S  N     P+      LP L+   I  +N L G IP +   +  L  L +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 370 NQLTGEIPEHLAVGCXXXXXXXXXXXXXKGHMFSRNFNLANLMSLQLEGNHFIGEISQSL 429
             ++G IP+ L+                          +  L++L    N   G +  S+
Sbjct: 111 TNVSGAIPDFLS-------------------------QIKTLVTLDFSYNALSGTLPPSI 145
Query: 430 SKCSSLEGLFLNNNNLSGKIPRWLGDLTRL-QYIIMPNNHLEGPIPVEFCXXXXXXXXXX 488
           S   +L G+  + N +SG IP   G  ++L   + +  N L G IP  F           
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF---- 201
Query: 489 SDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS 548
                   +DLS N L G      G+    Q ++L+ N L   +       K++  LDL 
Sbjct: 202 --------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLR 252
Query: 549 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPI 608
           NN++ G +P  L +LK L   +V++NNL GEIP+       F+ ++Y  N  LCG PLP 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311
Query: 609 C 609
           C
Sbjct: 312 C 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 516 TRIQTLNLSHNDLTG-------SIPSTFSNLKHVESLDLSN-NKLNGKIPHQLVELKTLE 567
           T  QT  +++ DL+G        IPS+ +NL ++  L +   N L G IP  + +L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 568 VFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 627
              + + N+SG IP++ +Q  T     +  N     LP  I   P  +     GN     
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 628 LIDTNSFFITFTTSYVI 644
           + D+   F    TS  I
Sbjct: 165 IPDSYGSFSKLFTSMTI 181

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
            +  L  ++ L +    +    P  LA +++L++LY+  NQ+T   + SPL  LT+++ L
Sbjct: 108 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYL 162
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
            + NN       L PL N S+L    AD+N++
Sbjct: 163 SIGNNQVN---DLTPLANLSKLTTLRADDNKI 191

>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of The Listeria Monocytogenes Inlb Internalin Domain Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
           GL  L  L+ LY+ +N +       L+ +T L  L +  NQ+   +   PL  LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
           YLS NH     +L  L N   L++F  +   LN  I    +L  PN
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 225

>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 Length = 362

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
           GL  L  L+ LY+ +N +       L+ +T L  L +  NQ++  +   PL  LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
           YLS NH     +L  L N   L++F  +   LN  I    +L  PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227

>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
           GL  L  L+ LY+ +N +       L+ +T L  L +  NQ++  +   PL  LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
           YLS NH     +L  L N   L++F  +   LN  I    +L  PN
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 225

>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal Domains Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
           GL  L  L+ LY+ +N +       L+ +T L  L +  NQ++  +   PL  LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
           YLS NH     +L  L N   L++F  +   LN  I    +L  PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	689
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-124
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-110
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  387 bits (996), Expect = e-124
 Identities = 178/628 (28%), Positives = 279/628 (44%), Gaps = 49/628 (7%)

Query: 3   SFPSLNTLYLLFNNFT-DIATTAQELHSFTNLEYLSLDFSSLH--ISLLQSIASIFPSLK 59
              SL  L L  N+ +               L++L++  + +   + +     S   +L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-----SRCVNLE 203

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS-NS 118
            L +S    +  +         +L+HLD+S  +  L+  F + I  +   LK L++S N 
Sbjct: 204 FLDVSSNNFSTGI--PFLGDCSALQHLDISGNK--LSGDFSRAIS-TCTELKLLNISSNQ 258

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLP-WCLANMTSLRILYVSYNQLTGSIS 177
             G             L  LQ L +A+N   G +P +      +L  L +S N   G++ 
Sbjct: 259 FVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 178 SSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 237
                  + +E L LS+N+F   + ++ L     LK+     NE + E+    SLT  + 
Sbjct: 312 PF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL--PESLTNLSA 368

Query: 238 QLSRLSLSSSYGDGFIFPKFL-YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
            L  L LSS+   G I P      ++ L+   L +    G+ P  L  N ++L  L L  
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSF 427

Query: 297 DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF 356
           + L+G     + S  +L  L +  N   G IP E+   + +L    +  N L G IPS  
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGL 486

Query: 357 GNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416
            N   L  + LSNN+LTGEIP+ +     NL  L LSNNS  G++ +   +  +L+ L L
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN--HLEGPIP 474
             N F G I  ++ K S      +  N ++GK   ++ +    +      N    +G   
Sbjct: 546 NTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 475 VEFCQLDLLQILDISDNNISGR-------------LDLSCNKLIGPIPPKIGNLTRIQTL 521
            +  +L      +I+     G              LD+S N L G IP +IG++  +  L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
           NL HND++GSIP    +L+ +  LDLS+NKL+G+IP  +  L  L    ++ NNLSG IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 582 EWEAQFATFNENSYEGNTFLCGLPLPIC 609
           E   QF TF    +  N  LCG PLP C
Sbjct: 722 E-MGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  350 bits (900), Expect = e-110
 Identities = 146/597 (24%), Positives = 230/597 (38%), Gaps = 59/597 (9%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               SL +L L  N+ +   TT   L S + L++L++  ++L      S      SL+ L
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 62  SMSGCEVNG--LVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS-NS 118
            +S   ++G  +V          L+HL +S  +I+ +            +L++L +S N+
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS-----RCVNLEFLDVSSNN 211

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
                        L     LQ L ++ N L G     ++  T L++L +S NQ  G I  
Sbjct: 212 FSTGIPF------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 179 SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 238
            P   L S++ L L+ N F   I          L       N     +            
Sbjct: 266 LP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV------------ 310

Query: 239 LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS 298
                           P F      LE   LS    +GE P   L     L+ L L  + 
Sbjct: 311 ----------------PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 299 LAGPFRLPIHS-HKRLGMLDISNNNFRGHIPLEIGDI-LPSLHVFNISMNALDGSIPSSF 356
            +G     + +    L  LD+S+NNF G I   +      +L    +  N   G IP + 
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 357 GNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416
            N + L  L LS N L+G IP  L      L  L L  N L+G +      +  L +L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE 476
           + N   GEI   LS C++L  + L+NN L+G+IP+W+G L  L  + + NN   G IP E
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

Query: 477 FCQLDLLQILDISDNNISG---------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHND 527
                 L  LD++ N  +G            ++ N + G     I N    +  + + N 
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593

Query: 528 --LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
               G      + L      ++++    G          ++    ++YN LSG IP+
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  326 bits (837), Expect = e-101
 Identities = 150/586 (25%), Positives = 233/586 (39%), Gaps = 106/586 (18%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
            S   L +L+L  ++      +        +L  L L  +SL             +L +L
Sbjct: 74  LSLTGLESLFLSNSHING---SVSGFKCSASLTSLDLSRNSLS--------GPVTTLTSL 122

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS-NSTR 120
                                L+ L++SS    L+       G  + SL+ L LS NS  
Sbjct: 123 G----------------SCSGLKFLNVSSNT--LDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
           G N    +    C    L+ L ++ N + G +   ++   +L  L VS N  +  I    
Sbjct: 165 GANVVGWVLSDGCG--ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-- 218

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS 240
           L   ++++ L +S N      S   +   + LK+    +N+    I        P   L 
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI--------PPLPLK 269

Query: 241 RLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLA 300
                                  L+Y  L+  K  GE P +L      L  L L      
Sbjct: 270 S----------------------LQYLSLAENKFTGEIPDFLSGACDTLTGLDL------ 301

Query: 301 GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIP-SSFGNM 359
                             S N+F G +P   G     L    +S N   G +P  +   M
Sbjct: 302 ------------------SGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKM 342

Query: 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSR--NFNLANLMSLQLE 417
             L++LDLS N+ +GE+PE L     +L +L LS+N+  G +           L  L L+
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEF 477
            N F G+I  +LS CS L  L L+ N LSG IP  LG L++L+ + +  N LEG IP E 
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 478 CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS 537
             +  L+ L +  N+++           G IP  + N T +  ++LS+N LTG IP    
Sbjct: 463 MYVKTLETLILDFNDLT-----------GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 538 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
            L+++  L LSNN  +G IP +L + ++L    +  N  +G IP  
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  325 bits (835), Expect = e-101
 Identities = 146/510 (28%), Positives = 237/510 (46%), Gaps = 35/510 (6%)

Query: 82  SLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS-NSTRGTNSSRILDQGLCSLMHLQE 140
            +  +D+SS  + +  S +     S+  L+ L LS +   G+ S             L  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG------FKCSASLTS 104

Query: 141 LYMADNDLRGSLPW--CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF- 197
           L ++ N L G +     L + + L+ L VS N L      S  + L S+E L LS N   
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 198 -RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPK 256
               +          LK      N+++ ++  S         L  L +SS+     I P 
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSR-CV----NLEFLDVSSNNFSTGI-P- 217

Query: 257 FLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGML 316
           FL     L++ D+S  K++G+F   +    T+L+ L++ ++   GP  +P    K L  L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGP--IPPLPLKSLQYL 274

Query: 317 DISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEI 376
            ++ N F G IP  +     +L   ++S N   G++P  FG+ + L  L LS+N  +GE+
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 377 PEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL-ANLMSLQLEGNHFIGEISQSLSKC--S 433
           P    +    L+ L LS N   G +     NL A+L++L L  N+F G I  +L +   +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 493
           +L+ L+L NN  +GKIP  L + + L  + +  N+L G IP     L  L+ L +  N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 494 SGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
                       G IP ++  +  ++TL L  NDLTG IPS  SN  ++  + LSNN+L 
Sbjct: 455 E-----------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 554 GKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
           G+IP  +  L+ L +  ++ N+ SG IP  
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  299 bits (768), Expect = 3e-91
 Identities = 131/475 (27%), Positives = 209/475 (44%), Gaps = 62/475 (13%)

Query: 133 CSLMHLQELYMADNDLR---GSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEK 189
           C    +  + ++   L     ++   L ++T L  L++S + + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 190 LYLSNNHF--RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSS 247
           L LS N     +      L + S LK     +N L+     S  L   +           
Sbjct: 105 LDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS----------- 152

Query: 248 YGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLAGPFRL 305
                           LE  DLS   ++G      + ++   +L+ L++  + ++G   +
Sbjct: 153 ----------------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V 194

Query: 306 PIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRIL 365
            +     L  LD+S+NNF   IP  +GD   +L   +IS N L G    +      L++L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 366 DLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHM-FSRNFNLANLMSLQLEGNHFIGE 424
           ++S+NQ  G IP        +L+ L L+ N   G +    +     L  L L GNHF G 
Sbjct: 253 NISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 425 ISQSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL- 482
           +      CS LE L L++NN SG++P   L  +  L+ + +  N   G +P     L   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 483 LQILDISDNNISGR---------------LDLSCNKLIGPIPPKIGNLTRIQTLNLSHND 527
           L  LD+S NN SG                L L  N   G IPP + N + + +L+LS N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 528 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
           L+G+IPS+  +L  +  L L  N L G+IP +L+ +KTLE   + +N+L+GEIP 
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 6e-09
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 514 NLTRIQTLNLSHNDLT---GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 570
              ++ +++LS   L     ++ S+  +L  +ESL LSN+ +NG +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 571 VAYNNLSGEIPEWE 584
           ++ N+LSG +    
Sbjct: 107 LSRNSLSGPVTTLT 120

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  253 bits (648), Expect = 8e-75
 Identities = 115/602 (19%), Positives = 218/602 (36%), Gaps = 40/602 (6%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               ++  L L  N    +   A     ++ L  L + F+++     +      P LK L
Sbjct: 22  DLPTNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVL 78

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
           ++   E++ L     F    +L  L + S  I               +L  L LS+    
Sbjct: 79  NLQHNELSQLSDKT-FAFCTNLTELHLMSNSI---QKIKNNPFVKQKNLITLDLSH---- 130

Query: 122 TNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM--TSLRILYVSYNQLTGSISS 178
            N  S         L +LQEL +++N ++      L     +SL+ L +S NQ+      
Sbjct: 131 -NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 179 SPLVHLTSIEKLYLSNNHFR--IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
                +  +  L+L+N      +   L     ++ ++     N++L+   + +  L    
Sbjct: 190 C-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKW 247

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWL--------LENNTK 288
             L+ L LS +  +             LEY  L +  +   F   L        L     
Sbjct: 248 TNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 289 LRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNAL 348
             + S+   SL           K L  L++ +N+  G         L +L   ++S +  
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFT 365

Query: 349 DGS--IPSSFGNM--NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSR 404
                   +F ++  + L IL+L+ N+++    +  +    +LE L L  N +   +  +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQ 424

Query: 405 NF-NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG--KIPRWLGDLTRLQY 461
            +  L N+  + L  N ++     S +   SL+ L L    L      P     L  L  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 462 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTL 521
           + + NN++          L+ L+ILD+  NN++    L  +   G     +  L+ +  L
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---RLWKHANPGGPIYFLKGLSHLHIL 541

Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 581
           NL  N         F +L  ++ +DL  N LN           +L+  ++  N ++    
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 582 EW 583
           + 
Sbjct: 602 KV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (575), Expect = 2e-64
 Identities = 116/621 (18%), Positives = 216/621 (34%), Gaps = 59/621 (9%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
             +  L +L + FN  + +    +       L+ L+L  + L   L     +   +L  L
Sbjct: 46  TRYSQLTSLDVGFNTISKL--EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS-NSTR 120
            +    +  +     F   K+L  LD+S   +   +S        + +L+ L LS N  +
Sbjct: 103 HLMSNSIQKIKNN-PFVKQKNLITLDLSHNGL---SSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
              S    +  + +   L++L ++ N ++   P C   +  L  L+++  QL  S++   
Sbjct: 159 ALKSE---ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 181 LV--HLTSIEKLYLSNNHFR--IPISLEPLFNHSRLKIFYADNNELNAEITQS-HSLTAP 235
            +    TSI  L LSN+        +   L   + L +     N LN     S   L   
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVGNDSFAWLP-- 272

Query: 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNG--------EFPTWLLENNT 287
             QL    L  +     +F   L+   ++ Y +L               +   +  +   
Sbjct: 273 --QLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 288 KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFR-GHIPLEI--GDILPSLHVFNIS 344
            L  L++ ++ + G           L  L +SN+      +  E         LH+ N++
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 345 MNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSR 404
            N +      +F  +  L +LDL  N++  E+      G  N+  + LS N     +   
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRN 448

Query: 405 NF-NLANLMSLQLEGNHF--IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQY 461
           +F  + +L  L L       +           +L  L L+NNN++      L  L +L+ 
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 462 IIMPNNHLE--------GPIPVEFCQLDLLQILDISDNNISG-------------RLDLS 500
           + + +N+L         G        L  L IL++  N                  +DL 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS-NLKHVESLDLSNNKLNGKIPHQ 559
            N L         N   +++LNL  N +T      F    +++  LD+  N  +      
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI 628

Query: 560 LVELKTLEVFSVAYNNLSGEI 580
              +  +         LS   
Sbjct: 629 AWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  196 bits (501), Expect = 3e-54
 Identities = 87/520 (16%), Positives = 179/520 (34%), Gaps = 79/520 (15%)

Query: 82  SLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQEL 141
           S E  D S  ++       Q+  +   ++  L+L++        R+          L  L
Sbjct: 5   SHEVADCSHLKLT------QVPDDLPTNITVLNLTH----NQLRRLPAANFTRYSQLTSL 54

Query: 142 YMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
            +  N +    P     +  L++L + +N+L+     +     T++ +L+L +N  +   
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIK 113

Query: 202 SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQ 261
           +  P      L      +N L+                                      
Sbjct: 114 N-NPFVKQKNLITLDLSHNGLS----------------------------STKLGTQVQL 144

Query: 262 HDLEYADLSHIKMNGEFPTWL-LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISN 320
            +L+   LS+ K+       L +  N+ L++L L ++ +        H+  RL  L ++N
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 321 NNFRGHIPLEIGDI--LPSLHVFNISMNALDGSIPSSFGNMNF--LRILDLSNNQLTGEI 376
                 +  ++       S+   ++S + L  +  ++F  + +  L +LDLS N L    
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 377 PEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLE 436
            +  A     LE   L  N+++         L N+  L L+ +     IS          
Sbjct: 265 NDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS---------- 313

Query: 437 GLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG- 495
                  +L          L  L+++ M +N + G     F  L  L+ L +S++  S  
Sbjct: 314 -----LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 496 ----------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP-STFSN 538
                            L+L+ NK+          L  ++ L+L  N++   +    +  
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 539 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578
           L+++  + LS NK      +    + +L+   +    L  
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (446), Expect = 8e-47
 Identities = 78/434 (17%), Positives = 151/434 (34%), Gaps = 49/434 (11%)

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
            S  +   S+ +LT      P    T+I  L L++N  R   +      +S+L       
Sbjct: 4   VSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGF 58

Query: 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
           N ++                             + P+       L+  +L H +++    
Sbjct: 59  NTIS----------------------------KLEPELCQKLPMLKVLNLQHNELSQ-LS 89

Query: 280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
                  T L +L L+++S+      P    K L  LD+S+N             L +L 
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQ 148

Query: 340 VFNISMNALDGSIPSSFGNMNF--LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
              +S N +               L+ L+LS+NQ+    P         L  L L+N  L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQL 207

Query: 398 KGHM---FSRNFNLANLMSLQLEGNHFIGEISQSLS--KCSSLEGLFLNNNNLSGKIPRW 452
              +           ++ +L L  +      + +    K ++L  L L+ NNL+      
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 453 LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI 512
              L +L+Y  +  N+++         L  ++ L++  +       +S   L        
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK--QSISLASLPKIDDFSF 325

Query: 513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV----ELKTLEV 568
             L  ++ LN+  ND+ G   + F+ L +++ L LSN+  + +              L +
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 569 FSVAYNNLSGEIPE 582
            ++  N +S    +
Sbjct: 386 LNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  169 bits (431), Expect = 7e-45
 Identities = 72/295 (24%), Positives = 116/295 (39%), Gaps = 31/295 (10%)

Query: 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
              + D S+      +P    D+  ++ V N++ N L     ++F   + L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 372 LTGEIPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLANLMSLQLEGNHFIGEISQS 428
           ++   PE        L+ L L +N L       F+      NL  L L  N      +  
Sbjct: 61  ISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFA---FCTNLTELHLMSNSIQKIKNNP 116

Query: 429 LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL--LQIL 486
             K  +L  L L++N LS         L  LQ +++ NN ++     E        L+ L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 487 DISDNNISG-------------RLDLSCNKLIGPIPPKIG---NLTRIQTLNLSHNDLTG 530
           ++S N I                L L+  +L   +  K+      T I+ L+LS++ L+ 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 531 SIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
           +  +TF  LK  ++  LDLS N LN         L  LE F + YNN+       
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (315), Expect = 5e-30
 Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 18/214 (8%)

Query: 385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNN 444
           V+ E    S+  L       +    N+  L L  N      + + ++ S L  L +  N 
Sbjct: 4   VSHEVADCSHLKLTQ--VPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 445 LSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--------- 495
           +S   P     L  L+ + + +N L       F     L  L +  N+I           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 496 ----RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV--ESLDLSN 549
                LDLS N L          L  +Q L LS+N +            +   + L+LS+
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 550 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
           N++    P     +  L    +    L   + E 
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 6e-22
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 431 KCS-SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489
           KC+ S E    ++  L+ ++P  L   T +  + + +N L       F +   L  LD+ 
Sbjct: 1   KCTVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 490 DNNISG-------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF 536
            N IS               L+L  N+L           T +  L+L  N +     + F
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 537 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
              K++ +LDLS+N L+       V+L+ L+   ++ N +     E
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 2e-18
 Identities = 59/311 (18%), Positives = 110/311 (35%), Gaps = 31/311 (9%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIA-SIFPSLK 59
                +L  L L  +  +    T +   S  +     L+ +   IS ++S A S    L+
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNST 119
            L +   E+   + GQ +   +++  + +S  +        +     +PSL+ L L    
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY---LQLTRNSFALVPSLQRLMLRR-- 463

Query: 120 RGTNSSRILDQG---LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLT--- 173
               + + +D        L +L  L +++N++       L  +  L IL + +N L    
Sbjct: 464 ---VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 174 ----GSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQS 229
                      L  L+ +  L L +N F   I +E   +   LKI     N LN      
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 230 -HSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSH------IKMNGEFPTWL 282
            ++       L  L+L  +         F     +L   D+         +    F  W+
Sbjct: 580 FNNQV----SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

Query: 283 LENNTKLRQLS 293
            E +T + +LS
Sbjct: 636 NETHTNIPELS 646

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  238 bits (610), Expect = 2e-73
 Identities = 85/310 (27%), Positives = 126/310 (40%), Gaps = 44/310 (14%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS--IPSSFGNMNFLRILDLSN-NQL 372
            D  N  + G +          ++  ++S   L     IPSS  N+ +L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 373 TGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKC 432
            G IP  +A                          L  L  L +   +  G I   LS+ 
Sbjct: 90  VGPIPPAIA-------------------------KLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQL-DLLQILDISDN 491
            +L  L  + N LSG +P  +  L  L  I    N + G IP  +     L   + IS N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 492 NISG------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL 539
            ++G             +DLS N L G      G+    Q ++L+ N L   +       
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243

Query: 540 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNT 599
           K++  LDL NN++ G +P  L +LK L   +V++NNL GEIP+       F+ ++Y  N 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

Query: 600 FLCGLPLPIC 609
            LCG PLP C
Sbjct: 303 CLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (375), Expect = 7e-40
 Identities = 68/349 (19%), Positives = 104/349 (29%), Gaps = 82/349 (23%)

Query: 145 DNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV-HLTSIEKLYLSNNHFRIPISL 203
           +    G L         +  L +S   L         + +L  +  LY+           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--------- 85

Query: 204 EPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHD 263
                           N L   I                            P  +     
Sbjct: 86  ---------------INNLVGPI----------------------------PPAIAKLTQ 102

Query: 264 LEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF 323
           L Y  ++H  ++G  P + L     L  L    ++L+G     I S   L  +    N  
Sbjct: 103 LHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 324 RGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVG 383
            G IP   G          IS N L G IP +F N+N L  +DLS N L G+        
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF--- 217

Query: 384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN 443
                                  +  N   + L  N    ++   +    +L GL L NN
Sbjct: 218 ----------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254

Query: 444 NLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492
            + G +P+ L  L  L  + +  N+L G IP     L    +   ++N 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (311), Expect = 3e-31
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 424 EISQSLSKCSSL----EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG--PIPVEF 477
           +I + L   ++L          N    G +        R+  + +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 478 CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS 537
             L  L  L I   N           L+GPIPP I  LT++  L ++H +++G+IP   S
Sbjct: 73  ANLPYLNFLYIGGIN----------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 538 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
            +K + +LD S N L+G +P  +  L  L   +   N +SG IP+
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.8 bits (242), Expect = 4e-22
 Identities = 60/380 (15%), Positives = 115/380 (30%), Gaps = 131/380 (34%)

Query: 26  ELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEH 85
                  +  L L   +L          I  SL NL                     L  
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPY-----PIPSSLANLP-------------------YLNF 80

Query: 86  LDMSSTRIALNTSFLQIIGE------SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQ 139
           L +             ++G        +  L YL +++    TN S  +   L  +  L 
Sbjct: 81  LYIGGIN--------NLVGPIPPAIAKLTQLHYLYITH----TNVSGAIPDFLSQIKTLV 128

Query: 140 ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTS-IEKLYLSNNHF- 197
            L  + N L G+LP  ++++ +L  +    N+++G+I  S     +     + +S N   
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT 187

Query: 198 -RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPK 256
            +IP +                                 N  L+ + LS +         
Sbjct: 188 GKIPPTFA-------------------------------NLNLAFVDLSRN--------- 207

Query: 257 FLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGML 316
                            + G+       ++   +++ L  +SLA                
Sbjct: 208 ----------------MLEGDASVLFG-SDKNTQKIHLAKNSLAFD-------------- 236

Query: 317 DISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEI 376
                     +  ++G    +L+  ++  N + G++P     + FL  L++S N L GEI
Sbjct: 237 ----------LG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 377 PEHLAVGCVNLESLVLSNNS 396
           P+         +    +NN 
Sbjct: 285 PQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.7 bits (213), Expect = 2e-18
 Identities = 62/381 (16%), Positives = 114/381 (29%), Gaps = 122/381 (32%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSL-DFSSLHISLLQSIASIFPSLK 59
                 +N L L   N          L +   L +L +   ++L          I P++ 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPAIA 98

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNST 119
            L+                    L +L ++ T          + G ++P      LS   
Sbjct: 99  KLT-------------------QLHYLYITHT---------NVSG-AIPD----FLSQ-- 123

Query: 120 RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
                          +  L  L  + N L G+LP  ++++ +L  +    N+++G+I  S
Sbjct: 124 ---------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 180 PLVHLTS-IEKLYLSNNHF--RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
                +     + +S N    +IP +                                 N
Sbjct: 169 -YGSFSKLFTSMTISRNRLTGKIPPTFA-------------------------------N 196

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L+ + LS +  +G           + +   L+   +  +     +  +  L  L    
Sbjct: 197 LNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGL---- 249

Query: 297 DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF 356
                               D+ NN   G +P  +   L  LH  N+S N L G IP   
Sbjct: 250 --------------------DLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG- 287

Query: 357 GNMNFLRILDLSNNQLTGEIP 377
           GN+    +   +NN+     P
Sbjct: 288 GNLQRFDVSAYANNKCLCGSP 308

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (592), Expect = 2e-67
 Identities = 99/577 (17%), Positives = 189/577 (32%), Gaps = 57/577 (9%)

Query: 37  SLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALN 96
           ++ +  + ++  +   ++  S KNL +S   +  L     F  F  L+ LD+S   I   
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEI--- 64

Query: 97  TSFLQIIGES---MPSLKYLSLSNSTRGTNS-SRILDQGLCSLMHLQELYMADNDLRGSL 152
                I   +   +  L  L L+      N    +       L  LQ+L   + +L    
Sbjct: 65  ---QTIEDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR--IPISLEPLFNHS 210
            + + ++ +L+ L V++N +          +LT++E L LS+N  +      L  L    
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-- 174

Query: 211 RLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLS 270
            + +     +     +           +L +L+L +++    +    +     LE   L 
Sbjct: 175 -MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 271 HIKMNGEFPTWLLENNT--KLRQLSL------VNDSLAGPFRLPIHSHKRLGMLDISNNN 322
             +   E      + +    L  L++        D          +    +    + +  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 323 FRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAV 382
                               +              ++  L            E+      
Sbjct: 294 IERVKDF---SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV------ 344

Query: 383 GCVNLESLVLSNNSL--KGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL 440
              +LE L LS N L  KG     +F   +L  L L  N  I  +S +      LE L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 441 NNNNLSGKIPRW-LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG---- 495
            ++NL           L  L Y+ + + H        F  L  L++L ++ N+       
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 496 ----------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL 545
                      LDLS  +L    P    +L+ +Q LN+SHN+        +  L  ++ L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 546 DLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIP 581
           D S N +      +L     +L   ++  N+ +    
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (438), Expect = 4e-46
 Identities = 85/555 (15%), Positives = 172/555 (30%), Gaps = 81/555 (14%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLD---FSSLHISLLQSIASIFPS 57
           +G   +L  L +  N         +   + TNLE+L L      S++ + L+ +  +   
Sbjct: 120 IGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 58  LKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSN 117
             +L +S   +N +  G        L  L + +     + + ++   + +  L+   L  
Sbjct: 179 NLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNF--DSLNVMKTCIQGLAGLEVHRLVL 234

Query: 118 STRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSIS 177
                N   +      +L  L  L + +  L                   +Y        
Sbjct: 235 G-EFRNEGNLEKFDKSALEGLCNLTIEEFRL-------------------AYLDYYLDDI 274

Query: 178 SSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 237
                 LT++    L +        ++    +   +     N +   +       +    
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRL 330

Query: 238 QLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNG-EFPTWLLENNTKLRQLSLVN 296
             +     +++ +  +          LE+ DLS   ++     +      T L+ L L  
Sbjct: 331 TFTSNKGGNAFSEVDL--------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL-- 380

Query: 297 DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSS- 355
                                 S N         +G  L  L   +   + L      S 
Sbjct: 381 ----------------------SFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSV 416

Query: 356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSL 414
           F ++  L  LD+S+             G  +LE L ++ NS + +     F  L NL  L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 415 QLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP 474
            L           + +  SSL+ L +++NN           L  LQ +    NH+     
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 475 VEFCQL-DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP 533
            E       L  L+++ N+ +     +C          +  +   + L +    +  + P
Sbjct: 536 QELQHFPSSLAFLNLTQNDFAC----TC-----EHQSFLQWIKDQRQLLVEVERMECATP 586

Query: 534 STFSNLKHVESLDLS 548
           S    +  V SL+++
Sbjct: 587 SDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (399), Expect = 6e-41
 Identities = 73/443 (16%), Positives = 145/443 (32%), Gaps = 38/443 (8%)

Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEI 226
           ++Y  +  +    P     S + L LS N  R   S    F+   L++      E+    
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIE 68

Query: 227 TQS-HSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLEN 285
             +  SL+     LS L L+ +                L+        +        + +
Sbjct: 69  DGAYQSLS----HLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENF-PIGH 122

Query: 286 NTKLRQLSL-VNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF--- 341
              L++L++  N   +        +   L  LD+S+N  +     ++   L  + +    
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLS 181

Query: 342 -NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH 400
            ++S+N ++   P +F  +  L  L L NN  +  + +    G   LE   L     +  
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 401 M---FSRNFNLANLMSLQLEGNH------FIGEISQSLSKCSSLEGLFLNNNNLSGKIPR 451
                     L  L +L +E         ++ +I    +  +++    L +  +      
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 452 WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--------RLDLSCNK 503
                   Q++ + N        ++   L  L        N            LDLS N 
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 504 L--IGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-L 560
           L   G         T ++ L+LS N +   + S F  L+ +E LD  ++ L         
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 561 VELKTLEVFSVAYNNLSGEIPEW 583
           + L+ L    +++ +        
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGI 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  220 bits (563), Expect = 2e-63
 Identities = 108/596 (18%), Positives = 195/596 (32%), Gaps = 53/596 (8%)

Query: 52  ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIGESMPS 109
            ++  S + L  S   +  +     F    +L  LD++  +I      +F     +S   
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTF-----QSQHR 82

Query: 110 LKYLSLSNSTRGTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVS 168
           L  L L+      N    + +  L     L+ L+     +       L N  +L  LY+ 
Sbjct: 83  LDTLVLTA-----NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 169 YNQLTGSISSSPLVHLTSIEKLYLSNNHFR--IPISLEPLFNHSRLKIFYADNNELNAEI 226
            N ++ SI          ++ L   NN         +  L   + L +    N+     I
Sbjct: 138 SNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-----I 191

Query: 227 TQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQ-HDLEYADLSHIKMNGEFPTWLLEN 285
                    +     L+   +     IF          L       +      P      
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 286 -NTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNIS 344
               +  ++L             H    L  LD++  +    +P  +   L +L    +S
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLS 309

Query: 345 MNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSR 404
            N  +     S  N   L  L +  N    E+         NL  L LS++ ++      
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 405 N--FNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQY 461
               NL++L SL L  N  +   +++  +C  LE L L    L  K  +    +L  L+ 
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 462 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG----------------RLDLSCNKLI 505
           + + ++ L+      F  L  LQ L++  N+                    L LS   L 
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 506 GPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 565
                   +L  +  ++LSHN LT S     S+LK +  L+L++N ++  +P  L  L  
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQ 548

Query: 566 LEVFSVAYNNLSGEIP-EWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASI 620
               ++  N L       +  ++   N         L      +C +P  +    +
Sbjct: 549 QRTINLRQNPLDCTCSNIYFLEWYKEN------MQKLEDTEDTLCENPPLLRGVRL 598

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (426), Expect = 1e-44
 Identities = 101/544 (18%), Positives = 179/544 (32%), Gaps = 49/544 (9%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               +L  L L       I        S   L+ L L  + L   + ++  S   +LK+L
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPLI-FMAETALSGPKALKHL 110

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                 ++ +       + K+LE L + S  I   +S     G     LK L   N    
Sbjct: 111 FFIQTGISSI-DFIPLHNQKTLESLYLGSNHI---SSIKLPKGFPTEKLKVLDFQN---- 162

Query: 122 TNS-SRILDQGLCSLMHLQELYMADNDLR-GSLPWCLANMTSLRILYVSYNQLTG-SISS 178
            N+   +  + + SL     L +  N      +     +    + L     Q        
Sbjct: 163 -NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 179 SPLVHLTSIEKLYLSNNHF-RIPISLEPLFNHSRLKIFYADNNELNAEITQS-HSLTAPN 236
                + S+      +     I  ++        ++      +      + + H  +   
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS--- 278

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV- 295
             L  L L++++      P  L     L+   LS  K           N   L  LS+  
Sbjct: 279 -GLQELDLTATHLSEL--PSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKG 334

Query: 296 NDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDI--LPSLHVFNISMNALDGSIP 353
           N          + + + L  LD+S+++           +  L  L   N+S N       
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 354 SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLAN 410
            +F     L +LDL+  +L  +  +        L+ L LS++ L      +F     L  
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD---GLPA 450

Query: 411 LMSLQLEGNHFIGEISQ---SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467
           L  L L+GNHF     Q   SL     LE L L+  +LS         L  + ++ + +N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHND 527
            L          L  +             L+L+ N +   +P  +  L++ +T+NL  N 
Sbjct: 511 RLTSSSIEALSHLKGIY------------LNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 528 LTGS 531
           L  +
Sbjct: 559 LDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (390), Expect = 8e-40
 Identities = 93/536 (17%), Positives = 176/536 (32%), Gaps = 91/536 (16%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
               L  L    N    +  + +++ S      LSL+ +   I+ ++  A      ++L+
Sbjct: 151 PTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
             G +                               F  +   ++ SL   +  +     
Sbjct: 209 FGGTQNLL--------------------------VIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 123 NSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
            S  + +      M ++ + +  +             + L+ L ++   L+  + S  LV
Sbjct: 243 ISPAVFEG--LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LV 298

Query: 183 HLTSIEKLYLSNNHFR--IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS 240
            L++++KL LS N F     IS     +                              L+
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPS------------------------------LT 328

Query: 241 RLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNG-EFPTWLLENNTKLRQLSLVNDSL 299
            LS+  +     +    L +  +L   DLSH  +   +     L N + L+ L+L  +  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 300 AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
                       +L +LD++    +          L  L V N+S + LD S    F  +
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 360 NFLRILDLSNNQLTGEIPEHLAV--GCVNLESLVLSNNSLKG---HMFSRNFNLANLMSL 414
             L+ L+L  N       +          LE LVLS   L     H F+   +L  +  +
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMMNHV 505

Query: 415 QLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP 474
            L  N       ++LS    +  L L +N++S  +P  L  L++ + I +  N L+    
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC--- 561

Query: 475 VEFCQL-DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT 529
              C     L+    +   +    D  C            N   ++ + LS   L+
Sbjct: 562 --TCSNIYFLEWYKENMQKLEDTEDTLCE-----------NPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 3e-37
 Identities = 54/342 (15%), Positives = 97/342 (28%), Gaps = 25/342 (7%)

Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDI 318
             +   +  +  ++ +N E P  L  +      L    + L             L  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 319 SNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPE 378
           +                  L    ++ N L     ++      L+ L      ++     
Sbjct: 65  TRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 379 HLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL 438
            L      LESL L +N +      + F    L  L  + N       + +S       L
Sbjct: 124 PLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 439 FLN-NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP--VEFCQLDLLQILDISDNNISG 495
            LN N N    I     D    Q +          I   ++   +  L +    D +   
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 496 ---------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK 540
                           ++L  +             + +Q L+L+   L+  +PS    L 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301

Query: 541 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
            ++ L LS NK             +L   S+  N    E+  
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (311), Expect = 1e-29
 Identities = 48/288 (16%), Positives = 86/288 (29%), Gaps = 49/288 (17%)

Query: 315 MLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG 374
             +  N      IP   G +  S      S N L     ++F  +  L  LDL+  Q+  
Sbjct: 16  TYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 375 EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS 434
              +                            +   L +L L  N  I     +LS   +
Sbjct: 72  IHEDTFQ-------------------------SQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 494
           L+ LF     +S      L +   L+ + + +NH+      +    + L++LD  +N I 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 495 G---------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS--TFS 537
                            L+L+ N  I  I P   +    Q+LN         I      S
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 538 NLKHVESLDLSNNKLNGKIPHQLVELK--TLEVFSVAYNNLSGEIPEW 583
            ++ +      +       P     L   ++E  ++  +         
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 69/376 (18%), Positives = 133/376 (35%), Gaps = 50/376 (13%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
             F  L  L L   + +++ +    L   + L+ L L  +    +L Q  AS FPSL +L
Sbjct: 275 HCFSGLQELDLTATHLSELPS---GLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHL 330

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
           S+ G      +      + ++L  LD+S   I  +      +  ++  L+ L+LS     
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSY---- 385

Query: 122 TNS-SRILDQGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRILYVSYNQLTGSISSS 179
            N    +  +       L+ L +A   L+         N+  L++L +S++ L    S  
Sbjct: 386 -NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQ 443

Query: 180 PLVHLTSIEKLYLSNNHFR--IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 237
               L +++ L L  NHF          L    RL+I      +L+              
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-------------- 489

Query: 238 QLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVND 297
                          I          + + DLSH ++       L  ++ K   L+L ++
Sbjct: 490 --------------SIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL--SHLKGIYLNLASN 533

Query: 298 SLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFG 357
            ++      +    +   +++  N             +  L  +  +M  L+ +  +   
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCTC-----SNIYFLEWYKENMQKLEDTEDTLCE 588

Query: 358 NMNFLRILDLSNNQLT 373
           N   LR + LS+  L+
Sbjct: 589 NPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 55/302 (18%), Positives = 101/302 (33%), Gaps = 24/302 (7%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +    +L  L L  N F ++   +    +F +L +LS+  ++  + L         +L+ 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 61  LSMSGCEVNGL-VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNST 119
           L +S  ++           +   L+ L++S        S      +  P L+ L L+   
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP---LSLKTEAFKECPQLELLDLAF-- 409

Query: 120 RGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
             T       Q    +L  L+ L ++ + L  S       + +L+ L +  N        
Sbjct: 410 --TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 179 SP--LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
               L  L  +E L LS       I      +   +      +N     +T S      +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHN----RLTSSSIEALSH 522

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKM-----NGEFPTWLLENNTKLRQ 291
            +   L+L+S++    I P  L         +L    +     N  F  W  EN  KL  
Sbjct: 523 LKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLED 581

Query: 292 LS 293
             
Sbjct: 582 TE 583

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  208 bits (531), Expect = 6e-59
 Identities = 104/578 (17%), Positives = 195/578 (33%), Gaps = 61/578 (10%)

Query: 32  NLEYLSLDFSSLHISLLQSI-ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSS 90
            +  ++          L  +   I  S KN+ +S   +  L     F +F  L+ LD+S 
Sbjct: 10  VVPNITYQCMDQK---LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSR 65

Query: 91  TRIALNTSFLQIIGES---MPSLKYLSLSNSTRGTNS-SRILDQGLCSLMHLQELYMADN 146
             I        I  ++   +  L  L L+      N            L  L+ L   + 
Sbjct: 66  CEIE------TIEDKAWHGLHHLSNLILTG-----NPIQSFSPGSFSGLTSLENLVAVET 114

Query: 147 DLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR--IPISLE 204
            L     + +  + +L+ L V++N +      +   +LT++  + LS N+ +      L+
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 205 PLFN-HSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHD 263
            L              N     I           +L  L+L  ++    I    L +   
Sbjct: 175 FLRENPQVNLSLDMSLNP----IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 264 LEYADLSHIKMNGEFPTWLLENNT-------KLRQLSLVNDSLAGPFRLPIHSHKRLGML 316
           L    L   +   E    + E +         + +  L   +      +  H    +  +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 317 DISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEI 376
            ++  + +    LE           +I    L         ++ FL+ L L+ N+ +   
Sbjct: 291 SLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISF 344

Query: 377 PEHLAVGCVNLESLVLSNNSLK--GHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS 434
            +   V   +L  L LS N+L   G     +    +L  L L  N     +S +      
Sbjct: 345 KK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE 400

Query: 435 LEGLFLNNNNLSGKIPRW-LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 493
           L+ L   ++ L           L +L Y+ +   + +      F  L  L  L ++ N+ 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 494 SG--------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL 539
                            LDLS  +L          L R+Q LN+SHN+L     S ++ L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 540 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
             + +LD S N++           K+L  F++  N+++
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (463), Expect = 2e-49
 Identities = 106/560 (18%), Positives = 192/560 (34%), Gaps = 62/560 (11%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
            +F  L  L L       I   A   H   +L  L L  + +      S +    SL+NL
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKA--WHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENL 109

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSS---TRIALNTSFLQIIGESMPSLKYLSLSNS 118
                ++  L          +L+ L+++        L   F      ++ +L ++ LS +
Sbjct: 110 VAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYF-----SNLTNLVHVDLSYN 163

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
              T +   L     +      L M+ N +          +  L  L +  N  + +I  
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK 222

Query: 179 SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 238
           + L +L  +    L    F+   +LE                     +     +T   F+
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSI---------------MEGLCDVTIDEFR 267

Query: 239 LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS 298
           L+  +  S            +   ++    L+ + +        +  + K + LS++   
Sbjct: 268 LTYTNDFS------DDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQ 318

Query: 299 LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGN 358
           L      P      L  L ++ N  +G I  +    LPSL   ++S NAL  S   S+ +
Sbjct: 319 LKQ---FPTLDLPFLKSLTLTMN--KGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSD 372

Query: 359 MNF--LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQ 415
           +    LR LDLS N     I     +G   L+ L   +++LK       F +L  L+ L 
Sbjct: 373 LGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHLEGPIP 474
           +   +   +        +SL  L +  N+           + T L ++ +    LE    
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 475 VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK-IGNLTRIQTLNLSHNDLTGSIP 533
             F  L  LQ+L++S NN+              +       L  + TL+ S N +  S  
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLF------------LDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 534 STFSNLKHVESLDLSNNKLN 553
                 K +   +L+NN + 
Sbjct: 539 ILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 17/157 (10%)

Query: 423 GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL 482
           G ++  +    ++      +  LS K+P  +   +  + I +  N L+      F     
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 483 LQILDISDNNISGRLDLSCNKLIGPIPPK-IGNLTRIQTLNLSHNDLTGSIPSTFSNLKH 541
           LQ LD+S   I              I  K    L  +  L L+ N +    P +FS L  
Sbjct: 58  LQWLDLSRCEIET------------IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 542 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578
           +E+L     KL       + +L TL+  +VA+N +  
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 11/122 (9%)

Query: 471 GPIPVEFCQLDLLQILDISDNNISG----------RLDLSCNKLIGPIPPKIGNLTRIQT 520
           G +      +  +      D  +S            +DLS N L         N + +Q 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 521 LNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 580
           L+LS  ++       +  L H+ +L L+ N +    P     L +LE        L+   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 581 PE 582
             
Sbjct: 121 SF 122

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (515), Expect = 2e-56
 Identities = 80/553 (14%), Positives = 182/553 (32%), Gaps = 78/553 (14%)

Query: 57  SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS 116
            +  LS+ G   +G V          LE L + S    +N        + + +       
Sbjct: 82  RVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVN--ERLFGPKGISANMSDEQK 138

Query: 117 NSTRGTNSSRILDQ-GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGS 175
              R       +D         L +  +  +  + S+            +    N +T  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-F 197

Query: 176 ISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP 235
           +S + ++ LT + + Y+ N+ F +  ++   + +   +         + +      LT  
Sbjct: 198 VSKA-VMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQ-QYKTEDLKWDNLKDLT-- 252

Query: 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295
           + ++      +        P FL    +++  +++                 +      +
Sbjct: 253 DVEVYNCPNLTK------LPTFLKALPEMQLINVAC---------------NRGISGEQL 291

Query: 296 NDSLAGPFRLPIHSHKRLGMLDISNNNFR-GHIPLEIGDILPSLHVFNISMNALDGSIPS 354
            D        P+     + ++ I  NN +   +   +   +  L +     N L+G +P+
Sbjct: 292 KDDWQALADAPVGEK--IQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPA 348

Query: 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF---NLANL 411
            FG+   L  L+L+ NQ+T  IP +       +E+L  ++N LK       F   +++ +
Sbjct: 349 -FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVM 404

Query: 412 MSLQLEGNHF-------IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM 464
            ++    N            +  +  K  ++  + L+NN +S          + L  I +
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 465 PNNHLEG-------PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI--GNL 515
             N L              F    LL  +D+  N ++             +        L
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK------------LSDDFRATTL 512

Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN------NKLNGKIPHQLVELKTLEVF 569
             +  ++LS+N  +   P+   N   ++   + N      N+   + P  +    +L   
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 570 SVAYNNLSGEIPE 582
            +  N++   + E
Sbjct: 572 QIGSNDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  201 bits (512), Expect = 4e-56
 Identities = 77/573 (13%), Positives = 180/573 (31%), Gaps = 45/573 (7%)

Query: 26  ELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEH 85
            L+S   +  LSL+       +  +I      L+ L++     +G    +     K +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGS---HGEKVNERLFGPKGISA 131

Query: 86  LDMSSTRIALNTSFLQIIGESMPSLKYLSLS-NSTRGTNSSRILDQGLCSLMHLQELYMA 144
                 +  +   + +   +  P   +  L  +        + + +     +   ++   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 145 DNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLE 204
            N++   +   +  +T LR  Y+  +                 E    +  +    +  +
Sbjct: 192 SNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICE----AWENENSEYAQQYKTEDLKWD 246

Query: 205 PLFNHSRLKIFYADNN---ELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQ 261
            L + + ++++  +     +L   +     +   N   +R        D +         
Sbjct: 247 NLKDLTDVEVY--NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304

Query: 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNN 321
             ++   + +  +        L+   KL  L  + + L G       S  +L  L+++ N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363

Query: 322 NFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF--GNMNFLRILDLSNNQLTGEIPEH 379
                IP         +   + + N L   IP+ F   +++ +  +D S N++     ++
Sbjct: 364 QITE-IPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 380 LA------VGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF-------IGEIS 426
                      +N+ S+ LSNN +           + L S+ L GN         + + +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 427 QSLSKCSSLEGLFLNNNNLSGKIPR--WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 484
           ++      L  + L  N L+  +        L  L  I +  N      P +      L+
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539

Query: 485 ILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES 544
              I +       D   N+ +   P  I     +  L +  ND+         N+     
Sbjct: 540 GFGIRNQ-----RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SV 591

Query: 545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           LD+ +N         +       ++ + Y+   
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  197 bits (502), Expect = 1e-54
 Identities = 70/470 (14%), Positives = 143/470 (30%), Gaps = 63/470 (13%)

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP---LVHLTSIEKL 190
           S   +  L +      G +P  +  +T L +L +  +    +        +    S E+ 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 191 YLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYG 249
                H++   +  +P  + S L     +++     I +S  +T     L    +     
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT-----LKDTQIGQLSN 193

Query: 250 DGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHS 309
           +     K +     L    + +     E      EN       +           L   +
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN------ENSEYAQQYKTEDLKWDN 247

Query: 310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNAL--------DGSIPSSFGNMNF 361
            K L  +++ N      +P  +   LP + + N++ N          D    +       
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 362 LRILDLSNNQL-TGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH 420
           ++I+ +  N L T  +   L      L  L    N L+G                     
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEG--------------------- 344

Query: 421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG-PIPVEFCQ 479
                  +      L  L L  N ++     + G   +++ +   +N L+  P   +   
Sbjct: 345 ----KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL 539
           + ++  +D S N I         K   P+ P       + ++NLS+N ++      FS  
Sbjct: 401 VSVMSAIDFSYNEIGS----VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 540 KHVESLDLSNNKLNG-------KIPHQLVELKTLEVFSVAYNNLSGEIPE 582
             + S++L  N L                    L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  187 bits (477), Expect = 3e-51
 Identities = 76/594 (12%), Positives = 159/594 (26%), Gaps = 115/594 (19%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
           G    L  L L  +               +                +    +        
Sbjct: 102 GQLTELEVLALGSHGEKVNERL-FGPKGISANMSDEQ----KQKMRMHYQKTFVDYDPRE 156

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGES---MPSLKYLSLSN- 117
             S    + +         K    + +  T+I   ++ +  + ++   +  L+   + N 
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216

Query: 118 --------------STRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR 163
                         ++      +  D    +L  L ++ + +      LP  L  +  ++
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 164 ILYVSYNQLTGSISS-------SPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIF 215
           ++ V+ N+              +       I+ +Y+  N+ +  P+    L    +L + 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGML 335

Query: 216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMN 275
               N+L  ++    S      +L+ L+L+ +                     ++ I   
Sbjct: 336 ECLYNQLEGKLPAFGSEI----KLASLNLAYNQ--------------------ITEI--- 368

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDI 334
              P        ++  LS  ++ L   P      S   +  +D S N            +
Sbjct: 369 ---PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 335 ------LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAV------ 382
                   ++   N+S N +       F   + L  ++L  N LT      L        
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 383 GCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN 442
               L S+ L  N L                          +     +    L G+ L+ 
Sbjct: 486 NTYLLTSIDLRFNKLTK---------------------LSDDFR--ATTLPYLVGIDLSY 522

Query: 443 NNLSGKIPRWLGDLTRLQYIIMPN------NHLEGPIPVEFCQLDLLQILDISDNNISG- 495
           N+ S   P    + + L+   + N      N      P        L  L I  N+I   
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581

Query: 496 ---------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK 540
                     LD+  N  I      +          L ++           ++K
Sbjct: 582 NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  168 bits (427), Expect = 2e-44
 Identities = 61/441 (13%), Positives = 140/441 (31%), Gaps = 78/441 (17%)

Query: 156 LANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIF 215
           L +   +  L +     +G +  + +  LT +E L L ++                    
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSH-----------------GEK 118

Query: 216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMN 275
             +       I+ + S      Q  R+    ++ D      F     DL    ++     
Sbjct: 119 VNERLFGPKGISANMSDE--QKQKMRMHYQKTFVDYDPREDFS----DLIKDCINSDPQQ 172

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLAGPFRLP--IHSHKRLGMLDISNNNFRGHIPLEIGD 333
                       K  Q+  +++++     +   +    +L    + N+ F      E  +
Sbjct: 173 KSIKK-SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 334 ILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS 393
                   N        +    + N+  L  +++ N     ++P  L      ++ + ++
Sbjct: 229 NE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVA 281

Query: 394 NNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNL-SGKIPRW 452
            N                     E      +          ++ +++  NNL +  +   
Sbjct: 282 CNRGIS----------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 453 LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI 512
           L  + +L  +    N LEG +P  F     L  L+++ N I+             IP   
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE------------IPANF 372

Query: 513 -GNLTRIQTLNLSHNDLTGSIPSTFS--NLKHVESLDLSNNKLNG-------KIPHQLVE 562
            G   +++ L+ +HN L   IP+ F   ++  + ++D S N++          +     +
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 563 LKTLEVFSVAYNNLSGEIPEW 583
              +   +++ N +S    E 
Sbjct: 432 GINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  115 bits (289), Expect = 6e-27
 Identities = 28/245 (11%), Positives = 64/245 (26%), Gaps = 40/245 (16%)

Query: 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH 400
           FN  ++        S  +   +  L L     +G +P+ +      LE L L ++  K +
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 401 MFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG--DLTR 458
                                     + +S   S E       +       +    D + 
Sbjct: 121 --------------------ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI 518
           L    + ++  +  I            +    NNI+             +   +  LT++
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF------------VSKAVMRLTKL 208

Query: 519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578
           +   + ++                   +    +       +   LK L    V       
Sbjct: 209 RQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 579 EIPEW 583
           ++P +
Sbjct: 264 KLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 8e-16
 Identities = 15/162 (9%), Positives = 40/162 (24%), Gaps = 20/162 (12%)

Query: 452 WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG---------------- 495
            L    R+  + +      G +P    QL  L++L +  +                    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 496 -RLDLSCNKLIGPIPPKIG--NLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
            +                   + + +    ++ +    SI  +         +   +N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENS 594
              +   ++ L  L  F +  +    E      +        
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 12/114 (10%), Positives = 33/114 (28%), Gaps = 6/114 (5%)

Query: 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG--- 554
           +   +         + +  R+  L+L     +G +P     L  +E L L ++       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 555 -KIPHQLVELKTLEVFSVAYNNLSGEIPEW--EAQFATFNENSYEGNTFLCGLP 605
              P  +    + E       +      ++     F+   ++    +     + 
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 10/62 (16%), Positives = 22/62 (35%)

Query: 520 TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579
             N   +        + ++   V  L L     +G++P  + +L  LEV ++  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 580 IP 581
             
Sbjct: 121 ER 122

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  197 bits (501), Expect = 2e-53
 Identities = 76/473 (16%), Positives = 145/473 (30%), Gaps = 43/473 (9%)

Query: 132 LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLY 191
           L +   +  L +A    +G +P  +  +T L++L    +  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 192 LSNNHFRIPISLEPLFNHSRLKIFYADNNELNA--EITQSHSLTAPNFQLSRLSLSSSYG 249
              +  R+      L    RL +     + +N   E+      +  +  L    + +   
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS--LKDTQIGNLTN 435

Query: 250 DGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHS 309
                 K +     L+    ++     +               +           L   +
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSN 489

Query: 310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDG---------SIPSSFGNMN 360
            K L  +++ N      +P  + D LP L   NI+ N              +        
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH 420
            ++I  +  N L            V L  L   +N ++            L  L+L+ N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQ 606

Query: 421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRW--LGDLTRLQYIIMPNNHLEGPIPVEFC 478
                    +    +EGL  ++N L   IP       +  +  +    N +        C
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 479 QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT-------GS 531
            +D  + ++ S       + LS N++           + I T+ LS+N +T         
Sbjct: 666 SMDDYKGINAS------TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 532 IPSTFSNLKHVESLDLSNNKLNGKIPHQLV--ELKTLEVFSVAYNNLSGEIPE 582
               + N   + ++DL  NKL   +        L  L    V+YN  S   P 
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  195 bits (498), Expect = 5e-53
 Identities = 83/594 (13%), Positives = 169/594 (28%), Gaps = 65/594 (10%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           + +   +  L L              +   T L+ LS    S  +   +       +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDM 375

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
                  +    +     + + L   D+    I  N     I  +S  SLK   + N T 
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT- 434

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
             N    + + +  L  LQ +Y A++                      Y +   +   S 
Sbjct: 435 --NRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELS- 486

Query: 181 LVHLTSIEKLYLSNNHF--RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 238
             +L  +  + L N     ++P  L  L     L+      N                  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGI--------------- 528

Query: 239 LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS 298
               S +    D             ++   + +  +     +  L+   KL  L  V++ 
Sbjct: 529 ----SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 299 LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS--SF 356
           +         ++ +L  L +  N     IP +       +     S N L   IP+  + 
Sbjct: 585 VRHL--EAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640

Query: 357 GNMNFLRILDLSNNQLTGEIPEHLA----VGCVNLESLVLSNNSLKGHMFSRNFNLANLM 412
            ++  +  +D S N++  E             +N  ++ LS N ++          + + 
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 413 SLQLEGNHF-------IGEISQSLSKCSSLEGLFLNNNNLSGKIPR--WLGDLTRLQYII 463
           ++ L  N         +     +      L  + L  N L+  +        L  L  + 
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMD 759

Query: 464 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNL 523
           +  N      P +      L+   I         D   N+++   P  I     +  L +
Sbjct: 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQ-----RDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 524 SHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
             ND+          L     LD+++N         +       ++ + Y+   
Sbjct: 814 GSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (479), Expect = 2e-50
 Identities = 79/528 (14%), Positives = 169/528 (32%), Gaps = 74/528 (14%)

Query: 106 SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRIL 165
           +   +  LSL+       +   +   +  L  L+ L    +    S         +  + 
Sbjct: 321 NNGRVTGLSLAG----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 166 YVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225
               +++        L +   +    L  +       ++P+   SR+ +       L   
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 226 IT-----------------QSHSLTAPNFQLSRLSLSSSYGDGF-IFPKFLYHQHDLEYA 267
           IT                  +   T  N  +     +S Y   +        +  DL   
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 268 DLSHIKMNGEFPTWLLENNTKLRQLSL-------VNDSLAGPFRLP--IHSHKRLGMLDI 318
           +L +     + P +L  +  +L+ L++            A   RL     +  ++ +  +
Sbjct: 497 ELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 319 SNNNFRGHIPLEIG-DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIP 377
             NN     P       +  L + +   N +      +FG    L  L L  NQ+  EIP
Sbjct: 556 GYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIP 611

Query: 378 EHLAVGCVNLESLVLSNNSLKG--HMFSRNFNLANLMSLQLEGNHFIGE-----ISQSLS 430
           E        +E L  S+N LK   ++F+   ++  + S+    N    E      S    
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 431 KCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE-------GPIPVEFCQLDLL 483
           K  +   + L+ N +           + +  II+ NN +         P    +    LL
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 484 QILDISDNNISGRLDLSCNKLIGPIPPKI--GNLTRIQTLNLSHNDLTGSIPSTFSNLKH 541
             +D+  N ++             +        L  +  +++S+N  + S P+   N   
Sbjct: 731 TTIDLRFNKLTS------------LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQ 777

Query: 542 VESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
           +++  +        N++  + P  +    +L    +  N++  ++ E 
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  133 bits (337), Expect = 1e-32
 Identities = 37/268 (13%), Positives = 81/268 (30%), Gaps = 27/268 (10%)

Query: 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG- 399
           FN  ++           N   +  L L+     G +P+ +      L+ L    +S    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVS 362

Query: 400 ------HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWL 453
                    + + +      +++       +  Q L+    L+     N  +        
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 454 GDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--------RLDLSCNKLI 505
             L   Q I    N +   I     +L  LQI+  +++  +           +    K  
Sbjct: 423 ISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 506 GPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG---------KI 556
                   NL  +  + L +      +P    +L  ++SL+++ N+            ++
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 557 PHQLVELKTLEVFSVAYNNLSGEIPEWE 584
                    +++F + YNNL        
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASAS 568

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  185 bits (470), Expect = 2e-49
 Identities = 125/667 (18%), Positives = 233/667 (34%), Gaps = 81/667 (12%)

Query: 48  LQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL---NTSFLQIIG 104
           L  +  +  + + L +S   +  +     FP  + L+ L++ S    L     +F     
Sbjct: 16  LTQVPQVLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAF----- 69

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSL--PWCLANMTSL 162
            ++P+L+ L L +S        +       L HL EL +    L  ++       N+ +L
Sbjct: 70  RNLPNLRILDLGSS----KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI--PISLEPLFNHSRLKIFYADNN 220
             L +S NQ+           L S++ +  S+N   +     LEPL   +      A N+
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 221 --ELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF-----------LYHQHDLEYA 267
                +           N  L  L +S +     I   F           L   H +  A
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 268 DLSHIKMNGEFPTWLLEN--NTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRG 325
                 +  +           + +R L L +  +         + K L +L+++ N    
Sbjct: 246 GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN- 303

Query: 326 HIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCV 385
            I  E    L +L V N+S N L     S+F  +  +  +DL  N +   I +       
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLE 362

Query: 386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNL 445
            L++L L +N+L     +    + ++  + L GN  +     +L+       + L+ N L
Sbjct: 363 KLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRL 413

Query: 446 SG-KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ-LDLLQILDISDNNISGRLDLSCNK 503
               I  +L  +  LQ +I+  N        +       L+ L + +N +    +     
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC- 472

Query: 504 LIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563
                      L+ +Q L L+HN L    P  FS+L  +  L L++N+L     + L   
Sbjct: 473 -----WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--P 525

Query: 564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP---------------- 607
             LE+  ++ N L    P+    F + +      N F+C   L                 
Sbjct: 526 ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

Query: 608 ----ICRSPATMSEASIGNER----DDNLIDTNSFFITFTTSYVIVIFGIVIVLYVNSYW 659
                C  P + S  S+ +      D+  +  +  F  F    V +   ++ +L V  + 
Sbjct: 583 PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFR 642

Query: 660 RRRWFYF 666
              +  +
Sbjct: 643 GFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (350), Expect = 3e-34
 Identities = 91/506 (17%), Positives = 164/506 (32%), Gaps = 74/506 (14%)

Query: 123 NSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
                L Q    L   + L ++ N +R         +  L++L +       +I      
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70

Query: 183 HLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL 242
           +L ++  L L ++     +  +       L         L+  + +          L+RL
Sbjct: 71  NLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF-RNLKALTRL 128

Query: 243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKM------------NGEFPTWLLENNTKLR 290
            LS +              + L+  D S  ++                  + L  N+   
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 291 QLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDG 350
           ++S+       PFR     +  L +LD+S N +             ++ +     NA+  
Sbjct: 189 RVSVDWGKCMNPFR-----NMVLEILDVSGNGW-------------TVDITGNFSNAISK 230

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGC-VNLESLVLSNN---SLKGHMFSRNF 406
           S   S    + +       + +        A     ++  L LS+    SL   +F    
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--- 287

Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
            L +L  L L  N       ++     +L+ L L+ N L          L ++ YI +  
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 467 NHLEGPIPVEFCQLDLLQILDISDNNIS--------GRLDLSCNKLIG------------ 506
           NH+       F  L+ LQ LD+ DN ++          + LS NKL+             
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 507 ---------PIPPKIGNLTRIQTLNLSHNDLTG-SIPSTFSNLKHVESLDLSNNKLNGKI 556
                     I   +  +  +Q L L+ N  +  S   T S    +E L L  N L    
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 557 PHQLVE-----LKTLEVFSVAYNNLS 577
             +L       L  L+V  + +N L+
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  125 bits (316), Expect = 5e-30
 Identities = 84/498 (16%), Positives = 170/498 (34%), Gaps = 47/498 (9%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMS 64
             L  L L F   +D         +   L  L L  + +    L        SLK++  S
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 65  GCEVNGLVRGQGFP-HFKSLEHLDMSSTRIA--LNTSFLQIIGE-SMPSLKYLSLSN--- 117
             ++  +   +  P   K+L    +++  +   ++  + + +       L+ L +S    
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 118 -----STRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM--TSLRILYVSYN 170
                       S+     L    H+       ++++       A +  +S+R L +S+ 
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

Query: 171 QLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSH 230
            +  S++S     L  ++ L L+ N     I+ E  +    L++     N L  E+  S+
Sbjct: 277 FVF-SLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLG-ELYSSN 333

Query: 231 SLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSH--------------IKMNG 276
               P   ++ + L  ++    I  +       L+  DL                I ++G
Sbjct: 334 FYGLPK--VAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 277 EFPTWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDIL 335
                L + N     + L  + L        +     L +L ++ N F      +     
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 336 PSLHVFNISMNALDGSIPSS-----FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESL 390
           PSL    +  N L  +  +      F  ++ L++L L++N L   +P  +      L  L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGL 509

Query: 391 VLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP 450
            L++N L   + S N   ANL  L +  N     ++ +     SL  L + +N    +  
Sbjct: 510 SLNSNRLT--VLSHNDLPANLEILDISRNQL---LAPNPDVFVSLSVLDITHNKFICECE 564

Query: 451 -RWLGDLTRLQYIIMPNN 467
                +      + +   
Sbjct: 565 LSTFINWLNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (287), Expect = 2e-26
 Identities = 78/424 (18%), Positives = 133/424 (31%), Gaps = 60/424 (14%)

Query: 161 SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
             RI +  +  LT  +       L + E+L LS N+ R  ++        +L++      
Sbjct: 5   DGRIAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRT-VTASSFPFLEQLQL------ 52

Query: 221 ELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPT 280
                                L L S Y    I  +   +  +L   DL   K+      
Sbjct: 53  ---------------------LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHP 90

Query: 281 WLLENNTKLRQLSLVNDSLAGPF--RLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSL 338
              +    L +L L    L+          + K L  LD+S N  R          L SL
Sbjct: 91  DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150

Query: 339 HVFNISMNALDGSIPSSFGN--MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS 396
              + S N +               L    L+ N L   +            ++VL    
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 397 LKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDL 456
           +     S N    ++       N      + SL     + G     +N+          L
Sbjct: 211 V-----SGNGWTVDITGNFS--NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 457 TR--LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-G 513
            R  ++++ + +  +       F  L  L++L+++ N I+             I  +   
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK------------IADEAFY 311

Query: 514 NLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 573
            L  +Q LNLS+N L     S F  L  V  +DL  N +          L+ L+   +  
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 574 NNLS 577
           N L+
Sbjct: 372 NALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 29/226 (12%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
             P +  + L  N+   I            L+ L L  ++L      +     PS+ ++ 
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQT--FKFLEKLQTLDLRDNAL------TTIHFIPSIPDIF 387

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
           +SG ++  L +        +   + +S  R+             +P L+ L L+ +    
Sbjct: 388 LSGNKLVTLPKI-----NLTANLIHLSENRLENLDIL--YFLLRVPHLQILILNQN---- 436

Query: 123 NSSRILDQGLCSLM-HLQELYMADNDLRG----SLPWC-LANMTSLRILYVSYNQLTGSI 176
             S        S    L++L++ +N L+      L W     ++ L++LY+++N L  S+
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SL 495

Query: 177 SSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
                 HLT++  L L++N       L      + L+I     N+L
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.9 bits (192), Expect = 5e-15
 Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 22/222 (9%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
               L TL L  N  T I       H   ++  + L  + L      ++  I  +   + 
Sbjct: 360 FLEKLQTLDLRDNALTTI-------HFIPSIPDIFLSGNKLV-----TLPKINLTANLIH 407

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS-NSTRG 121
           +S   +  L           L+ L ++  R   ++          PSL+ L L  N  + 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRF--SSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
              + +       L HLQ LY+  N L    P   +++T+LR L ++ N+LT     S  
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHN 522

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN 223
               ++E L +S N    P           L +    +N+  
Sbjct: 523 DLPANLEILDISRNQLLAP----NPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 31/195 (15%), Positives = 65/195 (33%), Gaps = 34/195 (17%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +   P L  L L  N F+  +          +LE L L  + L ++    +         
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLAWETELCWDV----- 475

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
                           F     L+ L ++   +    S    +   + +L+ LSL++   
Sbjct: 476 ----------------FEGLSHLQVLYLNHNYL---NSLPPGVFSHLTALRGLSLNS--- 513

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
             N   +L        +L+ L ++ N L    P       SL +L +++N+       S 
Sbjct: 514 --NRLTVLSHND-LPANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFICECELST 567

Query: 181 LVHLTSIEKLYLSNN 195
            ++  +   + ++  
Sbjct: 568 FINWLNHTNVTIAGP 582

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (427), Expect = 7e-45
 Identities = 100/548 (18%), Positives = 189/548 (34%), Gaps = 46/548 (8%)

Query: 44  HISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQ 101
            ++  +   ++  S KNL +S   +  L     F  F  L+ LD+S   I    + ++  
Sbjct: 16  ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAY-- 72

Query: 102 IIGESMPSLKYLSLSNSTRGTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMT 160
              +S+  L  L L+      N    +       L  LQ+L   + +L     + + ++ 
Sbjct: 73  ---QSLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 161 SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
           +L+ L V++N +          +LT++E L LS+N  +  I    L    ++ +     +
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLD 183

Query: 221 ELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNG---- 276
                +           +L +L+L +++    +    +     LE   L   +       
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 277 -EFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGML---DISNNNFRGHIPLEIG 332
            +F    LE    L         L       I     L  +    + +            
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL 392
                L + N                +  L+ L  ++N+      E   V   +LE L L
Sbjct: 304 FGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDL 354

Query: 393 SNNSL--KGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP 450
           S N L  KG     +F   +L  L L  N  +  +S +      LE L   ++NL     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 451 RW-LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIP 509
                 L  L Y+ + + H        F  L  L++L ++ N+               +P
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF----------LP 463

Query: 510 PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 569
                L  +  L+LS   L    P+ F++L  ++ L++++N+L          L +L+  
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 570 SVAYNNLS 577
            +  N   
Sbjct: 524 WLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (382), Expect = 6e-39
 Identities = 111/565 (19%), Positives = 183/565 (32%), Gaps = 95/565 (16%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
            SFP L  L L       I   A    S ++L  L L  + +  SL     S   SL+ L
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSS---TRIALNTSFLQIIGESMPSLKYLSLSNS 118
                 +  L       H K+L+ L+++        L   F      ++ +L++L LS+ 
Sbjct: 106 VAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSS- 158

Query: 119 TRGTNS-SRILDQGLCSLMHLQ----ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLT 173
               N    I    L  L  +      L ++ N +    P     +  L  L +  N  +
Sbjct: 159 ----NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213

Query: 174 GSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLT 233
            ++  + +  L  +E   L    FR         N   L+           +  +S    
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFR---------NEGNLE-----------KFDKSALEG 253

Query: 234 APNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLS 293
             N  +    L+                 ++    L  + +           N   + L 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLE 310

Query: 294 LVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALD--GS 351
           LVN       + P    K L  L  ++N             LPSL   ++S N L   G 
Sbjct: 311 LVNCKF---GQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGC 364

Query: 352 IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF--NLA 409
              S      L+ LDLS N +   +  +   G   LE L   +++LK  M   +   +L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLK-QMSEFSVFLSLR 421

Query: 410 NLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHL 469
           NL+ L +   H     +   +  SSLE L +  N+                         
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL------------------- 462

Query: 470 EGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDL 528
               P  F +L  L  LD+S   +              + P    +L+ +Q LN++ N L
Sbjct: 463 ----PDIFTELRNLTFLDLSQCQLEQ------------LSPTAFNSLSSLQVLNMASNQL 506

Query: 529 TGSIPSTFSNLKHVESLDLSNNKLN 553
                  F  L  ++ + L  N  +
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (272), Expect = 6e-25
 Identities = 66/402 (16%), Positives = 138/402 (34%), Gaps = 21/402 (5%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEY--LSLDFSSLHISLLQSIASIFPSL 58
             +  +L  L L  N    I     +L     +    LSLD S   ++ +Q  A     L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 59  KNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS-- 116
             L++     +  V          LE   +         +  +    ++  L  L++   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 117 NSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRILYVSYNQLTGS 175
                      +      L ++    +    +     +        L ++   + Q    
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF--- 319

Query: 176 ISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP 235
               P + L S+++L  ++N      S   L +   L+      N L+ +   S S    
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295
              L  L LS +                LE+ D  H  +       +  +   L  L + 
Sbjct: 373 T-SLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 296 NDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSS 355
           +      F    +    L +L ++ N+F+ +   +I   L +L   ++S   L+   P++
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
           F +++ L++L++++NQL   +P+ +     +L+ + L  N  
Sbjct: 490 FNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 25/224 (11%)

Query: 366 DLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEGNHFI 422
                    +IP++L     + ++L LS N    L  + F    +   L  L L      
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQ 65

Query: 423 GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL 482
                +    S L  L L  N +          L+ LQ ++    +L          L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 483 LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKH- 541
           L+ L+++ N I              +P    NLT ++ L+LS N +     +    L   
Sbjct: 126 LKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 542 ---VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
                SLDLS N +N  I     +   L   ++  N  S  + +
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 13/68 (19%), Positives = 23/68 (33%)

Query: 516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
              + L+LS N L      +F +   ++ LDLS  ++          L  L    +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 576 LSGEIPEW 583
           +       
Sbjct: 88  IQSLALGA 95

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (402), Expect = 1e-41
 Identities = 89/527 (16%), Positives = 188/527 (35%), Gaps = 63/527 (11%)

Query: 52  ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIGESMPS 109
           + +  ++K+L +S  ++  +  G       +L+ L + S+RI      +F      S+ S
Sbjct: 22  SGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAF-----YSLGS 75

Query: 110 LKYLSLSNSTRGTNS-SRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILYV 167
           L++L LS+     N  S +       L  L+ L +  N  +   +     N+T+L+ L +
Sbjct: 76  LEHLDLSD-----NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 168 SYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN---- 223
              +    I       LTS+ +L +     R     + L +   +       +E      
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 224 ---AEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPT 280
                ++    L   +  L+R   S    D    P            D S  ++      
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK---- 245

Query: 281 WLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHV 340
            LL    +L ++   + +L G                  ++       +E      ++  
Sbjct: 246 -LLRYILELSEVEFDDCTLNGLGDFN----------PSESDVVSELGKVE----TVTIRR 290

Query: 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK-- 398
            +I    L   + + +  +  ++ + + N+++   +P   +    +LE L LS N +   
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 399 -GHMFSRNFNLANLMSLQLEGNHF--IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD 455
                +      +L +L L  NH   + +  + L    +L  L ++ N     +P     
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 456 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG---------RLDLSCNKLIG 506
             +++++ + +  +     V+ C    L++LD+S+NN+            L +S NKL  
Sbjct: 409 PEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK- 464

Query: 507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
              P       +  + +S N L       F  L  ++ + L  N  +
Sbjct: 465 -TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (295), Expect = 8e-28
 Identities = 79/491 (16%), Positives = 169/491 (34%), Gaps = 57/491 (11%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMS 64
            SL  L L  N+ + ++++       ++L+YL+L  +      + S+     +L+ L + 
Sbjct: 74  GSLEHLDLSDNHLSSLSSSW--FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNS 124
             E    +R   F    SL  L++ +  +    ++     +S+  + +L+L  S     S
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHLS----ES 184

Query: 125 SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHL 184
           + +L+     L  ++ L + D +L       L        +     + +  ++      L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNEL 243

Query: 185 TSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSL 244
             + +  L  +              + L  F    +++ +E+ +  ++T     + RL +
Sbjct: 244 LKLLRYILELSEVEFDD-----CTLNGLGDFNPSESDVVSELGKVETVT-----IRRLHI 293

Query: 245 SSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFR 304
              Y   +           ++   + + K+    P    ++   L  L L          
Sbjct: 294 PQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL---------- 341

Query: 305 LPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALD--GSIPSSFGNMNFL 362
               S   +    + N+  +G          PSL    +S N L            +  L
Sbjct: 342 ----SENLMVEEYLKNSACKGA--------WPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFI 422
             LD+S N     +P+        +  L LS+  ++     +      L  L +  N+ +
Sbjct: 390 TSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNN-L 443

Query: 423 GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL 482
              S  L     L+ L+++ N L   +P        L  + +  N L+      F +L  
Sbjct: 444 DSFSLFL---PRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 483 LQILDISDNNI 493
           LQ + +  N  
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (255), Expect = 7e-23
 Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 37/296 (12%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           LD+S N    +I         +L V  +  + ++     +F ++  L  LDLS+N L+  
Sbjct: 31  LDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-S 88

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEIS-QSLSKCS 433
           +         +L+ L L  N  +    +  F NL NL +L++       EI     +  +
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 493
           SL  L +   +L     + L  +  + ++ +  +     + +    L  ++ L++ D N+
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 494 SG------------------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT 529
           +                           D S N+L+  +   I  L+ ++  + + N L 
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNGLG 267

Query: 530 GSIPSTFSNLKH--------VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
              PS    +          +  L +    L   +      L+ ++  +V  + + 
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 44/270 (16%), Positives = 93/270 (34%), Gaps = 24/270 (8%)

Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
            G+ D  + +F   IP     +  ++   ++S N +             L++L L ++++
Sbjct: 7   SGVCDGRSRSFT-SIP---SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 373 TGEIPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFNLANLMSLQLEGNHFIG-EISQS 428
              I         +LE L LS+N L       F     L++L  L L GN +    ++  
Sbjct: 63  N-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG---PLSSLKYLNLMGNPYQTLGVTSL 118

Query: 429 LSKCSSLEGLFLNNNNLSGKIPRW-LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 487
               ++L+ L + N     +I R     LT L  + +    L          +  +  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 488 ISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL 547
           +  +  +  L++  +            L+ ++ L L   +L     S     +    +  
Sbjct: 179 LHLSESAFLLEIFAD-----------ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 548 SNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
              + +        EL  L  + +  + + 
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 69/407 (16%), Positives = 140/407 (34%), Gaps = 55/407 (13%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
              SLN L +   +  +  + +  L S  ++ +L+L  S     LL+  A I  S++ L 
Sbjct: 146 GLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLE 202

Query: 63  MSGCEVNGLVRGQ--GFPHFKSLEHLDMSSTRIALNT-SFLQIIGESMPSLKYLSLSNST 119
           +    +                ++ L    + +   + + L  +   +  L  +   + T
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 120 -------RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQL 172
                    + S  + + G    + ++ L++    L   L    + +  ++ + V  +++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 173 TGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNH--SRLKIFYADNNELNAEITQSH 230
              +  S   HL S+E L LS N                  L+      N L   + ++ 
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTG 380

Query: 231 SLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLR 290
            +      L+ L +S                        +      +   W      K+R
Sbjct: 381 EILLTLKNLTSLDISR-----------------------NTFHPMPDSCQWP----EKMR 413

Query: 291 QLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDG 350
            L+L +  +     +     + L +LD+SNNN            LP L    IS N L  
Sbjct: 414 FLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLK- 464

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
           ++P +      L ++ +S NQL   +P+ +     +L+ + L  N  
Sbjct: 465 TLPDA-SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 21/221 (9%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEG 418
             + D  +   T  IP  L      ++SL LS N    +           ANL  L L+ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKS 59

Query: 419 NHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHL-EGPIPVEF 477
           +        +     SLE L L++N+LS     W G L+ L+Y+ +  N      +   F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 478 CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS 537
             L  LQ L I +      +                 LT +  L +    L      +  
Sbjct: 120 PNLTNLQTLRIGNVETFSEIR----------RIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 538 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578
           +++ +  L L  ++    +      L ++    +   NL+ 
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 44/196 (22%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
           G++PSL TL L  N+   +  T + L +  NL  L +  ++ H         +  S +  
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--------PMPDSCQWP 409

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                              + +  L++SST I        +      +L+ L +SN    
Sbjct: 410 -------------------EKMRFLNLSSTGIR------VVKTCIPQTLEVLDVSN---- 440

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N+       L     LQELY++ N L+ +LP   +    L ++ +S NQL  S+     
Sbjct: 441 -NNLDSFSLFLPR---LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-SVPDGIF 493

Query: 182 VHLTSIEKLYLSNNHF 197
             LTS++K++L  N +
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 494 SGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
           SG  D         IP  +     +++L+LS N +T           +++ L L ++++N
Sbjct: 7   SGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 554 GKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
                    L +LE   ++ N+LS     W
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (394), Expect = 3e-41
 Identities = 108/525 (20%), Positives = 186/525 (35%), Gaps = 87/525 (16%)

Query: 76  GFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSL 135
                       +  T +    S        +  +  L            + +D G+  L
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQ-----TDLDQVTTLQADR-----LGIKSID-GVEYL 67

Query: 136 MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNN 195
            +L ++  ++N L    P  L N+T L  + ++ NQ+      +PL +LT++  L L NN
Sbjct: 68  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNN 122

Query: 196 HFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFP 255
                  ++PL N + L      +N ++ +I+    LT     L +LS  +         
Sbjct: 123 QIT---DIDPLKNLTNLNRLELSSNTIS-DISALSGLT----SLQQLSFGNQ-------- 166

Query: 256 KFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGM 315
                        ++ +K         L N T L +L + ++ ++      +     L  
Sbjct: 167 -------------VTDLKP--------LANLTTLERLDISSNKVSDI--SVLAKLTNLES 203

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           L  +NN      PL I   L +L   +++ N L      +  ++  L  LDL+NNQ++  
Sbjct: 204 LIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 258

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL 435
            P     G   L  L L  N +     S    L  L +L+L  N         +S   +L
Sbjct: 259 APLS---GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNL 311

Query: 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495
             L L  NN+S   P  +  LT+LQ +   NN +          L  +  L    N IS 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367

Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
                       + P + NLTRI  L L+    T +  +  +N+    ++      L   
Sbjct: 368 ------------LTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI-- 412

Query: 556 IPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTF 600
            P  + +  +     + +N  S    E    F+          TF
Sbjct: 413 APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (325), Expect = 5e-32
 Identities = 97/500 (19%), Positives = 171/500 (34%), Gaps = 79/500 (15%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
           +        L   N TD  +          +  L      L I  +  +     +L  ++
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQA--DRLGIKSIDGVEY-LNNLTQIN 74

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
            S  ++  +       +   L  + M++ +IA  T        ++ +L  L+L N     
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPL-----ANLTNLTGLTLFN----- 121

Query: 123 NSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
           N    +D  L +L +L  L ++ N +       L+ +TSL+ L              PL 
Sbjct: 122 NQITDID-PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV----TDLKPLA 174

Query: 183 HLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL 242
           +LT++E+L +S+N       +  L   + L+   A NN+++ +IT    LT     L  L
Sbjct: 175 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS-DITPLGILT----NLDEL 226

Query: 243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGP 302
           SL+ +                     L  I          L + T L  L L N+ ++  
Sbjct: 227 SLNGNQ--------------------LKDIG--------TLASLTNLTDLDLANNQISNL 258

Query: 303 FRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFL 362
              P+    +L  L +  N      PL     L +L    ++ N L+   P    N+  L
Sbjct: 259 --APLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISP--ISNLKNL 311

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFI 422
             L L  N ++   P         L+ L   NN +     S   NL N+  L    N   
Sbjct: 312 TYLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 366

Query: 423 GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL 482
                 L+  + +  L LN+   +     +  +++    +      L  P          
Sbjct: 367 DLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGS 422

Query: 483 LQILDISDNNISGRLDLSCN 502
               DI+ N  S   ++S  
Sbjct: 423 YTEPDITWNLPSYTNEVSYT 442

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  107 bits (270), Expect = 7e-25
 Identities = 75/444 (16%), Positives = 163/444 (36%), Gaps = 60/444 (13%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               +L  +    N  TDI      L + T L  + ++ +   I+ +  +A+   +L  L
Sbjct: 65  EYLNNLTQINFSNNQLTDI----TPLKNLTKLVDILMNNN--QIADITPLAN-LTNLTGL 117

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIA---------------LNTSFLQIIG-E 105
           ++   ++  +       +  +L  L++SS  I+                      +    
Sbjct: 118 TLFNNQITDI---DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 174

Query: 106 SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRIL 165
           ++ +L+ L +S+     N    +   L  L +L+ L   +N +    P  L  +T+L  L
Sbjct: 175 NLTTLERLDISS-----NKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 166 YVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225
            ++ NQL        L  LT++  L L+NN      +L PL   ++L       N+++  
Sbjct: 227 SLNGNQLK---DIGTLASLTNLTDLDLANNQI---SNLAPLSGLTKLTELKLGANQIS-N 279

Query: 226 ITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLEN 285
           I+    LT     L+ L L+ +          + +  +L Y  L    ++   P   + +
Sbjct: 280 ISPLAGLT----ALTNLELNEN---QLEDISPISNLKNLTYLTLYFNNISDISP---VSS 329

Query: 286 NTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISM 345
            TKL++L   N+ ++      + +   +  L   +N      PL     L  +    ++ 
Sbjct: 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLND 384

Query: 346 NALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRN 405
            A   +  +   N++    +      L    P  ++    +     ++ N         +
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALI--APATIS-DGGSYTEPDITWNLPSYTN-EVS 440

Query: 406 FNLANLMSLQLEGNHFIGEISQSL 429
           +  +  +++      F G ++Q L
Sbjct: 441 YTFSQPVTIGKGTTTFSGTVTQPL 464

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (349), Expect = 5e-36
 Identities = 78/418 (18%), Positives = 150/418 (35%), Gaps = 74/418 (17%)

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
            +L  L    NQ+       P   L    +  L        ++ E L     +       
Sbjct: 3   ATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAG 53

Query: 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
            ++        S+      +  L+                   +LEY +L+  ++    P
Sbjct: 54  EKV-------ASIQG----IEYLT-------------------NLEYLNLNGNQITDISP 83

Query: 280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
              L N  KL  L +  + +       + +   L  L ++ +N     PL     L  ++
Sbjct: 84  ---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPL---ANLTKMY 135

Query: 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG 399
             N+  N    S  S   NM  L  L ++ +++    P  +A    +L SL L+ N ++ 
Sbjct: 136 SLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLSLNYNQIED 191

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL 459
              S   +L +L       N  I +I+  ++  + L  L + NN ++   P  L +L++L
Sbjct: 192 --ISPLASLTSLHYFTAYVNQ-ITDIT-PVANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 460 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQ 519
            ++ +  N +          L  L++L++  N IS                 + NL+++ 
Sbjct: 246 TWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD-------------ISVLNNLSQLN 290

Query: 520 TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           +L L++N L          L ++ +L LS N +    P  L  L  ++    A   + 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 7e-31
 Identities = 83/440 (18%), Positives = 157/440 (35%), Gaps = 95/440 (21%)

Query: 7   LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC 66
             TL  L      I                 L      ++ + +      S+  L ++G 
Sbjct: 2   AATLATLPAPINQIFP----DADLAEGIRAVL--QKASVTDVVTQ-EELESITKLVVAGE 54

Query: 67  EVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSR 126
           +V  +   QG  +  +LE+L+++  +I   +        ++  L  L +       N   
Sbjct: 55  KVASI---QGIEYLTNLEYLNLNGNQITDISPL-----SNLVKLTNLYIGT-----NKIT 101

Query: 127 ILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTS 186
            +   L +L +L+ELY+ ++++    P  LAN+T +  L +  N     +  SPL ++T 
Sbjct: 102 DIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL--SPLSNMTG 156

Query: 187 IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 246
           +  L ++ +  +    + P+ N + L     + N++  +I+   SLT     L   +   
Sbjct: 157 LNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQIE-DISPLASLT----SLHYFTAY- 207

Query: 247 SYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLP 306
                                                    ++  ++            P
Sbjct: 208 ---------------------------------------VNQITDIT------------P 216

Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD 366
           + +  RL  L I NN      PL     L  L    I  N +  S  ++  ++  L++L+
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQI--SDINAVKDLTKLKMLN 271

Query: 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS 426
           + +NQ++      L      L SL L+NN L          L NL +L L  NH I +I 
Sbjct: 272 VGSNQISD--ISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIR 327

Query: 427 QSLSKCSSLEGLFLNNNNLS 446
             L+  S ++     N  + 
Sbjct: 328 -PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 1e-25
 Identities = 71/398 (17%), Positives = 139/398 (34%), Gaps = 93/398 (23%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               S+  L +       I    Q +   TNLEYL+L  +   I+ +  +++    L NL
Sbjct: 41  EELESITKLVVAGEKVASI----QGIEYLTNLEYLNL--NGNQITDISPLSN-LVKLTNL 93

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            +   ++  +       +  +L  L ++   I+  +        ++  +  L+L      
Sbjct: 94  YIGTNKITDI---SALQNLTNLRELYLNEDNISDISPL-----ANLTKMYSLNLGA---- 141

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N +      L ++  L  L + ++ ++   P  +AN+T L  L ++YNQ+      SPL
Sbjct: 142 -NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE---DISPL 195

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241
             LTS+       N       + P+ N +RL      NN++  +++   +L+    QL+ 
Sbjct: 196 ASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNNKIT-DLSPLANLS----QLTW 247

Query: 242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAG 301
           L +                                           ++  ++        
Sbjct: 248 LEIG----------------------------------------TNQISDIN-------- 259

Query: 302 PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNF 361
                +    +L ML++ +N       L     L  L+   ++ N L        G +  
Sbjct: 260 ----AVKDLTKLKMLNVGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 362 LRILDLSNNQLTGEIP-EHLAVGCVNLESLVLSNNSLK 398
           L  L LS N +T   P   L      ++S   +N  +K
Sbjct: 313 LTTLFLSQNHITDIRPLASL----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.4 bits (194), Expect = 8e-16
 Identities = 27/172 (15%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470
             +L       I +I    +  +      L   +++  +     +L  +  +++    + 
Sbjct: 2   AATLATLPAP-INQIF-PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG 530
               +E   L  L+ L+++ N I+             I P + NL ++  L +  N +T 
Sbjct: 58  SIQGIE--YLTNLEYLNLNGNQITD------------ISP-LSNLVKLTNLYIGTNKIT- 101

Query: 531 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
              S   NL ++  L L+ + ++   P  L  L  +   ++  N+   ++  
Sbjct: 102 -DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (338), Expect = 6e-35
 Identities = 59/314 (18%), Positives = 118/314 (37%), Gaps = 28/314 (8%)

Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD 366
             +  R  +  +++++ +      +     ++   ++S N L     +       L +L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS 426
           LS+N L  E  +        L +L L+NN +            ++ +L    N+ I  +S
Sbjct: 65  LSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVS 115

Query: 427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQI 485
              S+    + ++L NN ++       G  +R+QY+ +  N ++           D L+ 
Sbjct: 116 --CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 486 LDISDNNISG-----------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS 534
           L++  N I              LDLS NKL   + P+  +   +  ++L +N L   I  
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 535 TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENS 594
                +++E  DL  N  +     +    K   V +VA   +  ++     +  T     
Sbjct: 232 ALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLG 289

Query: 595 YEGNTFLCGLPLPI 608
           + G      LP P 
Sbjct: 290 HYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 6e-24
 Identities = 55/361 (15%), Positives = 103/361 (28%), Gaps = 75/361 (20%)

Query: 158 NMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYA 217
           N    +I  V+ + L     +S      ++++L LS N                      
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------------------- 44

Query: 218 DNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSH--IKMN 275
                                LS++S              L     LE  +LS   +   
Sbjct: 45  --------------------PLSQIS-----------AADLAPFTKLELLNLSSNVLYET 73

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDIL 335
            +      E+ + LR L L N+ +       +     +  L  +NNN    +        
Sbjct: 74  LDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR---G 119

Query: 336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN 395
                  ++ N +        G  + ++ LDL  N++       LA     LE L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 396 SLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD 455
            +           A L +L L  N  +  +       + +  + L NN L   I + L  
Sbjct: 180 FIY--DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 456 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNL 515
              L++  +  N       +        ++  ++   +      +  +   P     G  
Sbjct: 236 SQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 516 T 516
            
Sbjct: 295 C 295

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 58/354 (16%), Positives = 117/354 (33%), Gaps = 75/354 (21%)

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
           +    +   + D+ L+ +L     +  +++ L +S N L+  IS++ L   T +E L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 194 NNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFI 253
           +N          L + S L+    +NN +  E+    S+         L  +++      
Sbjct: 67  SNVLY---ETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIE-------TLHAANNN----- 110

Query: 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL 313
                          +S +                 + + L                   
Sbjct: 111 ---------------ISRVS---------CSRGQGKKNIYL------------------- 127

Query: 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDG-SIPSSFGNMNFLRILDLSNNQL 372
                +NN       L+ G     +   ++ +N +D  +      + + L  L+L  N +
Sbjct: 128 -----ANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 373 TGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEISQSLSK 431
             ++   +      L++L LS+N L        F + A +  + L  N  +  I ++L  
Sbjct: 182 Y-DVKGQV--VFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNK-LVLIEKALRF 235

Query: 432 CSSLEGLFLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 484
             +LE   L  N    G +  +     R+Q +             E C +  L 
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 44/293 (15%), Positives = 95/293 (32%), Gaps = 36/293 (12%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMS 64
                  +  ++      +     S  N++ L L  + L       +A  F  L+ L++S
Sbjct: 10  NRYKIEKVTDSSLKQALASL--RQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLS 66

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNS 124
               N L          +L  LD+++  +              PS++ L  +N     N+
Sbjct: 67  S---NVLYETLDLESLSTLRTLDLNNNYV---QEL-----LVGPSIETLHAAN-----NN 110

Query: 125 SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHL 184
              +          + +Y+A+N +           + ++ L +  N++     +      
Sbjct: 111 ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 185 TSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN---AEITQSHSLTAPNFQLSR 241
            ++E L L  N       ++     ++LK     +N+L     E   +  +T     L  
Sbjct: 169 DTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT--WISLRN 223

Query: 242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294
             L           K L    +LE+ DL     +          N +++ ++ 
Sbjct: 224 NKLVL-------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 23/220 (10%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
            S  +L TL L  N          EL    ++E L    ++ +IS +    S     KN+
Sbjct: 77  ESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHA--ANNNISRVS--CSRGQGKKNI 125

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            ++  ++  L           +++LD+    I    +F ++   S  +L++L+L      
Sbjct: 126 YLANNKITMLRDLD-EGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTLEHLNLQY---- 178

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N    +   +     L+ L ++ N L   +     +   +  + +  N+L   I  + L
Sbjct: 179 -NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA-L 233

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNE 221
               ++E   L  N F      +    + R++       +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (324), Expect = 7e-33
 Identities = 56/305 (18%), Positives = 102/305 (33%), Gaps = 28/305 (9%)

Query: 269 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSL-AGPFRLPIHSHKRLGMLDISNNNFRGHI 327
             +   N     W   N+   +  +    +L A    L   +      L++ +       
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 328 PLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNL 387
           P +    L  L    I    L   +P +      L  L L+ N L   +P  +A     L
Sbjct: 97  PDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRL 152

Query: 388 ESLVLSNNSL---------KGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL 438
             L +                     +  L NL SL+LE    I  +  S++   +L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211

Query: 439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLD 498
            + N+ LS  +   +  L +L+ + +         P  F     L+ L + D        
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD-------- 262

Query: 499 LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 558
             C+ L+  +P  I  LT+++ L+L        +PS  + L     + +  +       H
Sbjct: 263 --CSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

Query: 559 QLVEL 563
           + V  
Sbjct: 320 RPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (319), Expect = 3e-32
 Identities = 51/338 (15%), Positives = 112/338 (33%), Gaps = 38/338 (11%)

Query: 257 FLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGML 316
             +H    E            +   L    ++ ++    + +         +S+    + 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIE 61

Query: 317 DISNNNFRGHIPLEIGDI-LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
             +    +      + D   P      +    L    P     ++ L+ + +    L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEI--------- 425
           +P+ +      LE+L L+ N L+      +  +L  L  L +     + E+         
Sbjct: 119 LPDTMQ-QFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 426 SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI 485
           S       +L+ L L    +   +P  + +L  L+ + + N+ L   +      L  L+ 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233

Query: 486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSH-NDLTGSIPSTFSNLKHVES 544
           LD+                +   PP  G    ++ L L   ++L  ++P     L  +E 
Sbjct: 234 LDLRGCT-----------ALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEK 281

Query: 545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
           LDL       ++P  + +L    +  V   +L  ++ +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 33/256 (12%)

Query: 350 GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLA 409
           GS      + +    L    +       + L+      +    ++ +   H   R  N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRW-HSAWRQANSN 56

Query: 410 NLMSLQLEGNHFIGEISQSLSKCSS--LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467
           N       G   +   +  L   +      L L +  L  + P     L+ LQ++ +   
Sbjct: 57  NPQIETRTGRA-LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 468 HLEGPIPVEFCQLDLLQILDISDNNISG------------RLDLSCNKLIGPIPPKIGN- 514
            L   +P    Q   L+ L ++ N +               L +     +  +P  + + 
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 515 --------LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 566
                   L  +Q+L L    +  S+P++ +NL++++SL + N+ L+  +   +  L  L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 567 EVFSVAYNNLSGEIPE 582
           E   +         P 
Sbjct: 232 EELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 1e-21
 Identities = 61/366 (16%), Positives = 100/366 (27%), Gaps = 68/366 (18%)

Query: 109 SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVS 168
             + L    ST        L      L   Q  Y AD +      W  AN  + +I   +
Sbjct: 13  GRENLYFQGSTA-------LRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRT 64

Query: 169 YNQLTGSISSSPLVHLTSIEKLYLSNNHF-RIPISLEPLFNHSRLKIFYADNNELN---A 224
              L  +              L L +    + P   +  F  S L+    D   L     
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPD 121

Query: 225 EITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLE 284
            + Q   L      L+R  L +        P  +   + L    +       E P  L  
Sbjct: 122 TMQQFAGLE--TLTLARNPLRA-------LPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 285 NNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNIS 344
            +       LVN                L  L +     R  +P  I + L +L    I 
Sbjct: 173 TDASGEHQGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIR 214

Query: 345 MNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSR 404
            + L  ++  +  ++  L  LDL         P                           
Sbjct: 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG----------------------- 250

Query: 405 NFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM 464
               A L  L L+    +  +   + + + LE L L       ++P  +  L     I++
Sbjct: 251 --GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 465 PNNHLE 470
           P +   
Sbjct: 309 PPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 49/345 (14%), Positives = 91/345 (26%), Gaps = 46/345 (13%)

Query: 57  SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS 116
             +NL   G     L      P+   L            + +          +     + 
Sbjct: 13  GRENLYFQGS--TALR-----PYHDVLSQWQRHYN---ADRNRWHSA-WRQANSNNPQIE 61

Query: 117 NSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSI 176
             T     +        +      L +    L    P     ++ L+ + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 177 SSSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP 235
             + +     +E L L+ N  R +P S+  L     L I      EL             
Sbjct: 120 PDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA--CPELT------------ 164

Query: 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295
                   L                  +L+   L    +    P   + N   L+ L + 
Sbjct: 165 -------ELPEPLAS-TDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIR 214

Query: 296 NDSLAGPFRLP--IHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIP 353
           N  L+    L   IH   +L  LD+       + P   G     L    +   +   ++P
Sbjct: 215 NSPLSA---LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLP 270

Query: 354 SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK 398
                +  L  LDL        +P  +A        +++  +   
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 42/253 (16%), Positives = 78/253 (30%), Gaps = 49/253 (19%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLH-----ISLLQSI------ 51
           + P    L L             +    ++L+++++D + L      +     +      
Sbjct: 79  TQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA 135

Query: 52  --------ASI--FPSLKNLSMSGC--------EVNGLVRGQGFPHFKSLEHLDMSSTRI 93
                   ASI     L+ LS+  C         +             +L+ L +  T I
Sbjct: 136 RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 94  ALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLP 153
               S    I   + +LK L + N     +    L   +  L  L+EL +       + P
Sbjct: 196 ---RSLPASIAN-LQNLKSLKIRN-----SPLSALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 154 WCLANMTSLRILYVS-YNQLTGSISSSPLVHLTSIEKLYLSNNHF--RIPISLEPLFNHS 210
                   L+ L +   + L  ++    +  LT +EKL L       R+P  +  L    
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL-TLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQL---P 301

Query: 211 RLKIFYADNNELN 223
              I     +   
Sbjct: 302 ANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 18/179 (10%)

Query: 2   GSFPSLNTLYLLFNN-FTDI------ATTAQELHSFTNLEYLSLDFSSLHISLLQSIASI 54
            S   L  L +      T++         + E     NL+ L L+++ +  SL  SIA++
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANL 205

Query: 55  FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
             +LK+L +    ++ L  G    H   LE LD+         ++  I G     LK L 
Sbjct: 206 -QNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCT--ALRNYPPIFG-GRAPLKRLI 259

Query: 115 LSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLT 173
           L +     ++   L   +  L  L++L +        LP  +A + +  I+ V  +   
Sbjct: 260 LKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  131 bits (330), Expect = 2e-32
 Identities = 87/488 (17%), Positives = 178/488 (36%), Gaps = 48/488 (9%)

Query: 81  KSLEHLDMSSTRIA--LNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLC-SLMH 137
           +    L++S   I+    +        S+  L+ L +S+     N  + LD  +      
Sbjct: 21  QKTTILNISQNYISELWTSDI-----LSLSKLRILIISH-----NRIQYLDISVFKFNQE 70

Query: 138 LQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
           L+ L ++ N L   +        +L+ L +S+N            +++ ++ L LS  H 
Sbjct: 71  LEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 198 RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF 257
               S+ P+ + +  K+          +      L   N +   +   ++    FI    
Sbjct: 128 EK-SSVLPIAHLNISKVLLVLGETYGEKE-DPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 258 LYHQHDLEYADLSHIKMNGEFPTWL-----LENNTKLRQLSLVNDSLAGPF---RLPIHS 309
           +    +LE +++  +  + +   +L     L+ N KL  L+L N           L +  
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 310 HKRLGMLDISNNNFRGHIPLEIGDI----LPSLHVFNISMNALDGSIPSSFGNMNFLRIL 365
           H  +    ISN   +G +     D     L +L +  +  +         +   + + I 
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 366 DLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF--IG 423
           + + +     +             L  SNN L   +F    +L  L +L L+ N    + 
Sbjct: 306 NFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 424 EISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNNHLEGPIPVEFCQLDL 482
           +I++  ++  SL+ L ++ N++S    +        L  + M +N L     +  C    
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--TDTIFRCLPPR 422

Query: 483 LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV 542
           +++LD+  N I              IP ++  L  +Q LN++ N L       F  L  +
Sbjct: 423 IKVLDLHSNKIKS------------IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 543 ESLDLSNN 550
           + + L  N
Sbjct: 471 QKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 82/451 (18%), Positives = 154/451 (34%), Gaps = 48/451 (10%)

Query: 137 HLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNH 196
               L ++ N +       + +++ LRIL +S+N++   +  S       +E L LS+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 197 FRIPISLEPLFNHSRLKIFYADNNELNA--EITQSHSLTAPNFQLSRLSLSSSYGDGFIF 254
               IS  P  N   LK      N  +A     +  +++    QL  L LS+++      
Sbjct: 81  LVK-ISCHPTVN---LKHLDLSFNAFDALPICKEFGNMS----QLKFLGLSTTH------ 126

Query: 255 PKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLG 314
                    LE + +  I         L+   T   +             L I       
Sbjct: 127 ---------LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 315 MLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG 374
              I + + +    LE+ +I   L     +  +   SI +       L  L L+N + T 
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVL---EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 375 EIPEHL--AVGCVNLESLVLSNNSLKGHMFSRNFNLAN-----LMSLQLEGNHFIGEISQ 427
                +   V    +    +SN  L+G +  R+F+ +      L   Q+  + F    S 
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 428 SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 487
                S++       +            ++   ++   NN L   +      L  L+ L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 488 ISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLD 546
           +  N +         K +  I      +  +Q L++S N ++        S  K + SL+
Sbjct: 355 LQMNQL---------KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 547 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           +S+N L   I   L     ++V  +  N + 
Sbjct: 406 MSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.5 bits (222), Expect = 7e-19
 Identities = 74/489 (15%), Positives = 145/489 (29%), Gaps = 71/489 (14%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDF-----------------SSLH 44
                   L +  N  +++ T+   + S + L  L +                     L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSD--ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75

Query: 45  IS--LLQSIASI-FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQ 101
           +S   L  I+     +LK+L +S    + L   + F +   L+ L +S+T          
Sbjct: 76  LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT---------H 126

Query: 102 IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTS 161
           +   S+  + +L++S        +    +    L       +            + +++ 
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 162 LRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNE 221
             +  +  + +   +  +   +  SI     +N                 L       N 
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL----------TLNNIETTWNS 236

Query: 222 LNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMN--GEFP 279
               +      T   F +S + L         F  F Y    L+   +  +  +  G   
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
           +++ E  + +   +           L          LD SNN        E    L  L 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELE 351

Query: 340 VFNISMNALD--GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
              + MN L     I      M  L+ LD+S N ++ +  +       +L SL +S+N L
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 398 KGHMF------------SRN---------FNLANLMSLQLEGNHFIGEISQSLSKCSSLE 436
              +F              N           L  L  L +  N           + +SL+
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 437 GLFLNNNNL 445
            ++L+ N  
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.3 bits (198), Expect = 6e-16
 Identities = 60/427 (14%), Positives = 142/427 (33%), Gaps = 59/427 (13%)

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEP-LFNH-SRLKIFYA 217
               IL +S N ++  + +S ++ L+ +  L +S+N  +    L+  +F     L+    
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDL 76

Query: 218 DNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGE 277
            +N+L       H        L  L LS +                        + +  E
Sbjct: 77  SHNKLVK--ISCHPTV----NLKHLDLSFN--------------------AFDALPICKE 110

Query: 278 FPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS 337
           F      N ++L+ L L    L     LPI       +L +    +         + L  
Sbjct: 111 F-----GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP---EGLQD 162

Query: 338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
            +  ++ +            +++   + +L  + +   + ++     +++ + + +N  L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 398 KGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT 457
                  N  L N+ +        +  +  +     S+  + L               L 
Sbjct: 223 ------SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 458 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTR 517
            L    + ++    P    +     + I +            + +            ++ 
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKN-----------FTVSGTRMVHMLCPSKISP 325

Query: 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNN 575
              L+ S+N LT ++     +L  +E+L L  N+L    KI     ++K+L+   ++ N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 576 LSGEIPE 582
           +S +  +
Sbjct: 386 VSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 60/361 (16%), Positives = 119/361 (32%), Gaps = 50/361 (13%)

Query: 2   GSFPSLNTLYL--------LFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIAS 53
                 NT  L         F+   D++         +N++ +  D    +   + +   
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 54  IFPSLKNLSMSGCEV--NGLVRGQGFPHFKSLEHLDMSSTRIA--LNTSFLQIIGESMPS 109
             P L NL+++  E   N  +R        ++ +  +S+ ++   L+       G S+ +
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 110 LKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSY 169
           L    + +   G   S I +       ++       +  R     C + ++    L  S 
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEI----FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 170 NQLTGSISSSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQ 228
           N LT         HLT +E L L  N  + +    E       L+      N ++ +  +
Sbjct: 334 NLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 229 SHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTK 288
                  +  L  L++SS+     IF         ++  DL                + K
Sbjct: 393 GDCSWTKS--LLSLNMSSNILTDTIFRCLP---PRIKVLDLH---------------SNK 432

Query: 289 LRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNAL 348
           ++ +           +L       L  L++++N  +  +P  I D L SL    +  N  
Sbjct: 433 IKSIP------KQVVKLE-----ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

Query: 349 D 349
           D
Sbjct: 481 D 481

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (325), Expect = 5e-32
 Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 25/292 (8%)

Query: 304 RLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLR 363
            +P        +LD+  N  +  +  +     P L    ++ N +    P +F N+  LR
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 364 ILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEGNH 420
            L L +N+L   IP  +  G  NL  L +S N    L  +MF    +L NL SL++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 421 FIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ 479
            +  IS ++ S  +SLE L L   NL+      L  L  L  + + + ++       F +
Sbjct: 140 -LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 480 LDLLQILDISDNNISGR-------------LDLSCNKLIGPIPPK-IGNLTRIQTLNLSH 525
           L  L++L+IS                    L ++   L   +P   + +L  ++ LNLS+
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSY 257

Query: 526 NDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           N ++    S    L  ++ + L   +L    P+    L  L V +V+ N L+
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 9e-24
 Identities = 47/268 (17%), Positives = 93/268 (34%), Gaps = 43/268 (16%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           +      F   +P     I     + ++  N +       F +   L  L+L+ N ++  
Sbjct: 16  VLCHRKRFV-AVP---EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-A 70

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL 435
           +         NL +L L +N LK                 +    F G         S+L
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK----------------LIPLGVFTG--------LSNL 106

Query: 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495
             L ++ N +   +     DL  L+ + + +N L       F  L+ L+ L +   N++ 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 496 RLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554
                       IP +   +L  +  L L H ++      +F  L  ++ L++S+     
Sbjct: 167 ------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 555 KIPHQLVELKTLEVFSVAYNNLSGEIPE 582
            +    +    L   S+ + NL+  +P 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 74/351 (21%), Positives = 133/351 (37%), Gaps = 61/351 (17%)

Query: 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV 167
              + L L           +      S  HL+EL + +N +    P    N+ +LR L +
Sbjct: 32  TETRLLDLGK----NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 168 SYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEP-LFNH-SRLKIFYADNNELNAE 225
             N+L   I       L+++ KL +S N       L   +F     LK     +N+L   
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDL--- 140

Query: 226 ITQSHSLTAPNFQ-LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLE 284
                 ++   F  L+ L             + L     LE  +L+ I      PT  L 
Sbjct: 141 ----VYISHRAFSGLNSL-------------EQL----TLEKCNLTSI------PTEALS 173

Query: 285 NNTKLRQLSLVNDSL----AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHV 340
           +   L  L L + ++       F+       RL +L+IS+  +   +         +L  
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFK----RLYRLKVLEISHWPYLDTMTPNCLY-GLNLTS 228

Query: 341 FNISMNALDGSIPS-SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK- 398
            +I+   L  ++P  +  ++ +LR L+LS N ++  I   +    + L+ + L    L  
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 399 --GHMFSRNFNLANLMSLQLEGNHFIGEISQSL-SKCSSLEGLFLNNNNLS 446
              + F     L  L  L + GN  +  + +S+     +LE L L++N L+
Sbjct: 287 VEPYAFR---GLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 77/398 (19%), Positives = 133/398 (33%), Gaps = 100/398 (25%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
                 L L  N    +        SF +LE L L+ +   +S ++  A           
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE--FASFPHLEELELNEN--IVSAVEPGA----------- 75

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLDMSSTRI-ALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
                        F +  +L  L + S R+  +           + +L  L +S      
Sbjct: 76  -------------FNNLFNLRTLGLRSNRLKLIPLGVFT----GLSNLTKLDISE----- 113

Query: 123 NS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
           N    +LD     L +L+ L + DNDL        + + SL  L +    LT SI +  L
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172

Query: 182 VHLTSIEKLYLSNNHFRI--PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 239
            HL  +  L L + +       S + L+    L+I  +        +            L
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI--SHWP----YLDTMTPNCLYGLNL 226

Query: 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
           + LS++                      +L+ +      P   + +   LR L+L  + +
Sbjct: 227 TSLSITHC--------------------NLTAV------PYLAVRHLVYLRFLNLSYNPI 260

Query: 300 AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
           +                 I  +             L  L    +    L    P +F  +
Sbjct: 261 S----------------TIEGSMLHE---------LLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
           N+LR+L++S NQLT  + E +     NLE+L+L +N L
Sbjct: 296 NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 35/225 (15%), Positives = 86/225 (38%), Gaps = 23/225 (10%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLD---FSSLHISLLQSIASIFPSLK 59
           SFP L  L L  N  + +   A   ++  NL  L L       + + +   +     +L 
Sbjct: 54  SFPHLEELELNENIVSAVEPGA--FNNLFNLRTLGLRSNRLKLIPLGVFTGL----SNLT 107

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIA-LNTSFLQIIGESMPSLKYLSLSNS 118
            L +S  ++  L+    F    +L+ L++    +  ++          + SL+ L+L   
Sbjct: 108 KLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFS----GLNSLEQLTLEK- 161

Query: 119 TRGTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSIS 177
                + + I  + L  L  L  L +   ++     +    +  L++L +S+     +++
Sbjct: 162 ----CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 178 SSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
            + L +  ++  L +++ +    +    + +   L+      N +
Sbjct: 218 PNCL-YGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPI 260

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (321), Expect = 5e-32
 Identities = 61/309 (19%), Positives = 124/309 (40%), Gaps = 31/309 (10%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
           L+ +     + +   +    F     +     ++   N+  R  +P  + D    + + N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKG 399
           ++   ++     +F   + ++ L +  N +   +P H+      L  LVL  N   SL  
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEI-SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTR 458
            +F    N   L +L +  N+ +  I   +    +SL+ L L++N L+  +   L  +  
Sbjct: 135 GIFH---NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 187

Query: 459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG----------RLDLSCNKLIGPI 508
           L +  +  N L             ++ LD S N+I+            L L  N L    
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT- 241

Query: 509 PPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 568
              + N   +  ++LS+N+L   +   F  ++ +E L +SNN+L   +      + TL+V
Sbjct: 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 569 FSVAYNNLS 577
             +++N+L 
Sbjct: 300 LDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (315), Expect = 3e-31
 Identities = 60/343 (17%), Positives = 127/343 (37%), Gaps = 32/343 (9%)

Query: 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295
           +     + +     D +   + +   +  +     +  M  + P  LL++  ++  L+L 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 296 NDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSS 355
           +  +             +  L +  N  R ++P  +   +P L V  +  N L       
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415
           F N   L  L +SNN L   I +       +L++L LS+N L     S    + +L    
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHAN 192

Query: 416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPV 475
           +  N        +L+   ++E L  ++N+++  +         L  + + +N+L      
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW 243

Query: 476 EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS 534
                  L  +D+S N +              I       + R++ L +S+N L  ++  
Sbjct: 244 -LLNYPGLVEVDLSYNELEK------------IMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 535 TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
               +  ++ LDLS+N L   +     +   LE   + +N++ 
Sbjct: 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (295), Expect = 1e-28
 Identities = 73/426 (17%), Positives = 141/426 (33%), Gaps = 86/426 (20%)

Query: 128 LDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSI 187
           +D  L       ++++          +    + + +I+    + +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 188 EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSS 247
           E L L++      I          ++  Y   N +                         
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRY----------------------- 107

Query: 248 YGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPI 307
                + P    +   L    L    ++   P  +  N  KL  LS+ N++L        
Sbjct: 108 -----LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 308 HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDL 367
            +   L  L +S+N    H+ L    ++PSL   N+S N L     S+      +  LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQ 427
           S+N +   +   +    V L  L L +N+L                          + + 
Sbjct: 213 SHNSIN-VVRGPV---NVELTILKLQHNNLT-------------------------DTA- 242

Query: 428 SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 487
            L     L  + L+ N L   +      + RL+ + + NN L   + +    +  L++LD
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301

Query: 488 ISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL 547
           +S N++              +        R++ L L HN +     ST   LK+   L L
Sbjct: 302 LSHNHLLH------------VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN---LTL 346

Query: 548 SNNKLN 553
           S+N  +
Sbjct: 347 SHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (250), Expect = 7e-23
 Identities = 70/404 (17%), Positives = 143/404 (35%), Gaps = 86/404 (21%)

Query: 69  NGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRIL 128
             +  G       + + +   ++ +         + +S   ++ L+L++          +
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLND-----LQIEEI 84

Query: 129 DQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSI 187
           D         +Q+LYM  N +R   P    N+  L +L +  N L+ S+      +   +
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143

Query: 188 EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSS 247
             L +SNN+    I  +     + L+     +N                 +L+ + LS  
Sbjct: 144 TTLSMSNNNLER-IEDDTFQATTSLQNLQLSSN-----------------RLTHVDLS-- 183

Query: 248 YGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPI 307
                + P        L +A++S+  ++       L     + +L               
Sbjct: 184 -----LIPS-------LFHANVSYNLLS------TLAIPIAVEELDA------------- 212

Query: 308 HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDL 367
                      S+N+    +    G +   L +  +  N L  +  +   N   L  +DL
Sbjct: 213 -----------SHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDL 255

Query: 368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEIS 426
           S N+L  +I  H  V    LE L +SNN L     +     +  L  L L  NH +  + 
Sbjct: 256 SYNELE-KIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNH-LLHVE 311

Query: 427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470
           ++  +   LE L+L++N++   +   L     L+ + + +N  +
Sbjct: 312 RNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.4 bits (243), Expect = 7e-22
 Identities = 75/406 (18%), Positives = 141/406 (34%), Gaps = 64/406 (15%)

Query: 15  NNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRG 74
           +  T       E  +  N + ++   S++   L  ++   F  ++ L+++  ++  +   
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY 87

Query: 75  QGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGL-C 133
             F +  +++ L M    I         + +++P L  L L       N    L +G+  
Sbjct: 88  A-FAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER-----NDLSSLPRGIFH 138

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
           +   L  L M++N+L           TSL+ L +S N+LT       L  + S+    +S
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVS 194

Query: 194 NNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFI 253
            N       L  L     ++   A +N +N        +  P                  
Sbjct: 195 YNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNV--------------- 226

Query: 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL 313
                    +L    L H  +  +     L N   L ++ L  + L      P    +RL
Sbjct: 227 ---------ELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT 373
             L ISNN     + L     +P+L V ++S N L   +  +    + L  L L +N + 
Sbjct: 275 ERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 374 GEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN 419
             +          L++L LS+N       S      N+    ++  
Sbjct: 332 -TLKLST---HHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 27/219 (12%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
              PSL    + +N  + +A           +E L    S   I++++    +   L  L
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIP-------IAVEELDA--SHNSINVVR--GPVNVELTIL 231

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            +     N L       ++  L  +D+S   +      +      M  L+ L +SN    
Sbjct: 232 KLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN---- 281

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N    L+     +  L+ L ++ N L   +         L  LY+ +N +  ++  S  
Sbjct: 282 -NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTH 338

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
             L +   L LS+N +          N +R  +  AD +
Sbjct: 339 HTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 41/259 (15%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLD---FSSLHISLLQSIASIFPSLKNL 61
            ++  LY+ FN    +        +   L  L L+    SSL   +  +     P L  L
Sbjct: 93  HTIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVLERNDLSSLPRGIFHNT----PKLTTL 146

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIA------------LNTSFLQIIG-ESMP 108
           SMS   +  +     F    SL++L +SS R+              N S+  +       
Sbjct: 147 SMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205

Query: 109 SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVS 168
           +++ L  S+     NS  ++   +     L  L +  N+L     W L N   L  + +S
Sbjct: 206 AVEELDASH-----NSINVVRGPVNV--ELTILKLQHNNLT-DTAW-LLNYPGLVEVDLS 256

Query: 169 YNQLTGSISSSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEIT 227
           YN+L   I   P V +  +E+LY+SNN    + +  +P+     LK+    +N     + 
Sbjct: 257 YNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPI---PTLKVLDLSHN----HLL 308

Query: 228 QSHSLTAPNFQLSRLSLSS 246
                     +L  L L  
Sbjct: 309 HVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 43/203 (21%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
                L  L L  NN TD A     L ++  L  + L ++ L                  
Sbjct: 223 PVNVELTILKLQHNNLTDTAW----LLNYPGLVEVDLSYNELEK---------------- 262

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                     +    F   + LE L +S+ R+      L + G+ +P+LK L LS+    
Sbjct: 263 ----------IMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH---- 304

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N    +++       L+ LY+  N +  +L   L+   +L+ L +S+N    +   +  
Sbjct: 305 -NHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALF 360

Query: 182 VHLTSIEKLYLSNNHFRIPISLE 204
            ++     +  ++ H +I   LE
Sbjct: 361 RNVARP-AVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 7/92 (7%), Positives = 33/92 (35%)

Query: 486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL 545
            ++  + +   + +           +   L   + +   ++ +     +   + + VE L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 546 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           +L++ ++     +      T++   + +N + 
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  125 bits (316), Expect = 1e-30
 Identities = 92/496 (18%), Positives = 171/496 (34%), Gaps = 68/496 (13%)

Query: 82  SLEHLDMSSTRIA-LNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLC-SLMHLQ 139
             + L +S   I+ L    +      +  L+ L LS+     N  R LD  +      L+
Sbjct: 53  RTKALSLSQNSISELRMPDIS----FLSELRVLRLSH-----NRIRSLDFHVFLFNQDLE 103

Query: 140 ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI 199
            L ++ N L+ ++      M SLR L +S+N            +LT +  L LS   FR 
Sbjct: 104 YLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR- 159

Query: 200 PISLEPL-FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFL 258
              L+ L   H  L     D    + +  ++ SL  PN  +  L    +          +
Sbjct: 160 --QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 259 YHQHDLEYADLSHIKMNGEFPTWLLEN---NTKLRQLSLVNDSLAGPFRLPIHS---HKR 312
                L+ +++     N +     L        L  ++L +        + +      + 
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 313 LGMLDISNNNFRGHIPLEIGDI----LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLS 368
           +  L+I N      I  E        L SL + ++       S  + +     + I  LS
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 369 NNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEISQ 427
            +     I         +   L  + N        +    L  L +L L+ N        
Sbjct: 338 ISDTP-FIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRN-------- 387

Query: 428 SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQL-DLLQIL 486
                 +   + L              +++ L+ + +  N L        C   + + +L
Sbjct: 388 ---GLKNFFKVAL-----------MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 487 DISDNNISG-----------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP-S 534
           ++S N ++G            LDL  N+++  IP  + +L  +Q LN++ N L  S+P  
Sbjct: 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDG 491

Query: 535 TFSNLKHVESLDLSNN 550
            F  L  ++ + L +N
Sbjct: 492 VFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 80/500 (16%), Positives = 176/500 (35%), Gaps = 47/500 (9%)

Query: 88  MSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTN--SSRILDQ---GLCSLMHLQELY 142
           MS  R  +  SF  +   ++        SN        S+R L      L      + L 
Sbjct: 1   MSQDRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPP--RTKALS 58

Query: 143 MADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPIS 202
           ++ N +       ++ ++ LR+L +S+N++  S+     +    +E L +S+N  +  IS
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-IS 116

Query: 203 LEPLFNHSRLKIFYADNNELNA--EITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYH 260
             P+ +   L+      N+ +      +  +LT    +L+ L LS++           + 
Sbjct: 117 CCPMAS---LRHLDLSFNDFDVLPVCKEFGNLT----KLTFLGLSAAKFRQLDLLPVAHL 169

Query: 261 QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV-NDSLAGPFRLPIHSHKRLGMLDIS 319
                  DL    + G     L   NT +  L    N   +    + +++   L + +I 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 320 -NNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPE 378
            N+     +   + ++     + N+++  ++ +   S     F                 
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF---------------W 274

Query: 379 HLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL 438
              V  +N+ +L ++    +         L +LM   ++   F+       S  + +   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLD 498
            L+ ++            +   ++    N     +      L  LQ L +  N +     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL----- 389

Query: 499 LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT-GSIPSTFSNLKHVESLDLSNNKLNGKIP 557
               K    +     N++ ++TL++S N L   +   T +  + +  L+LS+N L G + 
Sbjct: 390 ----KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 558 HQLVELKTLEVFSVAYNNLS 577
             L     ++V  +  N + 
Sbjct: 446 RCLPP--KVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 76/430 (17%), Positives = 142/430 (33%), Gaps = 46/430 (10%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               SL  L L FN+F  +     E  + T L +L L  +      L  +A +  S   L
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            +    + G           ++ HL         N+ F   +  S+ +L +L LSN    
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHP-----NSLFSVQVNMSVNALGHLQLSNIK-- 229

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
                         ++ +        L            +L+ +  ++            
Sbjct: 230 --------------LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ---F 272

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPL-FNHSRLKIFYADNNELNAEITQSHSL--TAPNFQ 238
                +E L + N      I  E   ++ + LK    ++ +    +    +L        
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 239 LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVN-- 296
           +  LS+S +    FI            + + +      +          +L+ L L    
Sbjct: 333 IKMLSISDT---PFIHMVCPPSPSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNG 388

Query: 297 -DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSS 355
             +      +   +   L  LD+S N+   H          S+ V N+S N L GS+   
Sbjct: 389 LKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFNLANLM 412
                 +++LDL NN++   IP+ +      L+ L +++N LK     +F     L +L 
Sbjct: 448 LPPK--VKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKSVPDGVFD---RLTSLQ 500

Query: 413 SLQLEGNHFI 422
            + L  N + 
Sbjct: 501 YIWLHDNPWD 510

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 1e-29
 Identities = 61/309 (19%), Positives = 124/309 (40%), Gaps = 31/309 (10%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
           L+ +     + +   +    F     +     ++   N+  R  +P  + D    + + N
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKG 399
           ++   ++     +F   + ++ L +  N +   +P H+      L  LVL  N   SL  
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEI-SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTR 458
            +F    N   L +L +  N+ +  I   +    +SL+ L L++N L+  +   L  +  
Sbjct: 141 GIFH---NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 193

Query: 459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG----------RLDLSCNKLIGPI 508
           L +  +  N L             ++ LD S N+I+            L L  N L    
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT- 247

Query: 509 PPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 568
              + N   +  ++LS+N+L   +   F  ++ +E L +SNN+L   +      + TL+V
Sbjct: 248 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 569 FSVAYNNLS 577
             +++N+L 
Sbjct: 306 LDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (288), Expect = 7e-27
 Identities = 80/446 (17%), Positives = 153/446 (34%), Gaps = 66/446 (14%)

Query: 116 SNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGS 175
            N        + +D  L       ++++          +    + + +I+    + +   
Sbjct: 7   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 65

Query: 176 ISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP 235
           + ++ L     +E L L++      I          ++  Y   N               
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFN--------------- 109

Query: 236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV 295
              +  L            P    +   L    L    ++   P  +  N  KL  LS+ 
Sbjct: 110 --AIRYLP-----------PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 155

Query: 296 NDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSS 355
           N++L         +   L  L +S+N    H+ L    ++PSL   N+S N L     S+
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----ST 206

Query: 356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415
                 +  LD S+N +   +   +    V L  L L +N+L     +   N   L+ + 
Sbjct: 207 LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLT--DTAWLLNYPGLVEVD 260

Query: 416 LEGNHFIGEISQ-SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP 474
           L  N  + +I      K   LE L+++NN L   +  +   +  L+ + + +NHL   + 
Sbjct: 261 LSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VE 317

Query: 475 VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS 534
               Q D L+ L +  N+I              +         ++ L LSHND   +   
Sbjct: 318 RNQPQFDRLENLYLDHNSIV------------TLKL--STHHTLKNLTLSHNDWDCNSLR 363

Query: 535 TFSNLKHVESLDLSNNKLNGKIPHQL 560
                ++V    + +   + KI +QL
Sbjct: 364 AL--FRNVARPAVDDADQHCKIDYQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (272), Expect = 7e-25
 Identities = 81/496 (16%), Positives = 167/496 (33%), Gaps = 83/496 (16%)

Query: 85  HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMA 144
           H+DM +  +      +     ++ + K ++  NS       ++    L S   ++ L + 
Sbjct: 33  HIDMQTQDVYFGFEDI-----TLNNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLN 83

Query: 145 DNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLE 204
           D  +     +  A   +++ LY+ +N +   +      ++  +  L L  N     +   
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRG 141

Query: 205 PLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDL 264
              N  +L      NN                  L R+                     L
Sbjct: 142 IFHNTPKLTTLSMSNN-----------------NLERIE-----------DDTFQATTSL 173

Query: 265 EYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFR 324
           +   LS  ++       L+ +   L   ++  + L+      +     +  LD S+N+  
Sbjct: 174 QNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLST-----LAIPIAVEELDASHNSIN 224

Query: 325 GHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGC 384
             +    G +   L +  +  N L  +  +   N   L  +DLS N+L  +I  H  V  
Sbjct: 225 -VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKM 277

Query: 385 VNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN 443
             LE L +SNN L     +     +  L  L L  NH +  + ++  +   LE L+L++N
Sbjct: 278 QRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334

Query: 444 NLSGKIPRWLGDLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDI-------------- 488
           ++   +   L     L+ + + +N  +   +   F  +    + D               
Sbjct: 335 SIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGL 391

Query: 489 ----SDNNISGRL--DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV 542
               SD     RL   ++   ++  +    G  +   T+N   +            L+  
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451

Query: 543 ESLDLSNNKLNGKIPH 558
           E L+   N+L  ++  
Sbjct: 452 EQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (249), Expect = 4e-22
 Identities = 97/594 (16%), Positives = 185/594 (31%), Gaps = 114/594 (19%)

Query: 15  NNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRG 74
           +  T       E  +  N + ++   S++   L  ++   F  ++ L+++  ++  +   
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY 93

Query: 75  QGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGL-C 133
             F +  +++ L M    I         + +++P L  L L       N    L +G+  
Sbjct: 94  A-FAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER-----NDLSSLPRGIFH 144

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
           +   L  L M++N+L           TSL+ L +S N+LT       L  + S+    +S
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVS 200

Query: 194 NNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFI 253
            N       L  L     ++   A +N +N        +  P                  
Sbjct: 201 YNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNV--------------- 232

Query: 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL 313
                    +L    L H  +  +     L N   L ++ L                   
Sbjct: 233 ---------ELTILKLQHNNLT-DTAW--LLNYPGLVEVDL------------------- 261

Query: 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT 373
                S N     I       +  L    IS N L  ++      +  L++LDLS+N L 
Sbjct: 262 -----SYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL 314

Query: 374 GEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCS 433
             +  +       LE+L L +NS+     S       L +L L  N +          C+
Sbjct: 315 -HVERNQP-QFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDW---------DCN 360

Query: 434 SLEGLFLN-------NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 486
           SL  LF N       + +   KI   L                E   P     L  + + 
Sbjct: 361 SLRALFRNVARPAVDDADQHCKIDYQLEHGL---------CCKESDKPYLDRLLQYIALT 411

Query: 487 DISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN-DLTGSIPSTFSNLKHVESL 545
            + +     +   S    I  +      +T+   + L  N  L   +    + ++ + + 
Sbjct: 412 SVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471

Query: 546 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNT 599
            +   +L   +  ++     L  + +  + L+         F    E       
Sbjct: 472 QIQQEQLLQGLHAEI--DTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLR 523

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 89/579 (15%), Positives = 172/579 (29%), Gaps = 101/579 (17%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
            SF  +  L L      +I T A                                     
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYA------------------------------------- 94

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                          F +  +++ L M    I         + +++P L  L L      
Sbjct: 95  ---------------FAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER---- 132

Query: 122 TNSSRILDQGL-CSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
            N    L +G+  +   L  L M++N+L           TSL+ L +S N+LT       
Sbjct: 133 -NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVD 187

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ-L 239
           L  + S+    +S N       L  L     ++   A +N +N        +  P    L
Sbjct: 188 LSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN-------VVRGPVNVEL 234

Query: 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
           + L L     +      +L +   L   DLS+ ++  +          +L +L + N+ L
Sbjct: 235 TILKLQ---HNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290

Query: 300 AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
                L       L +LD+S+N+   H+          L    +  N++  ++       
Sbjct: 291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSI-VTLK--LSTH 344

Query: 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-------NLANLM 412
           + L+ L LS+N         L              +    +                + +
Sbjct: 345 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

Query: 413 SLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP 472
              +     + ++ ++  +CS+ + +    +       +    L   + +    N L   
Sbjct: 405 LQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE 464

Query: 473 IPV----EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDL 528
           +      +  Q  LLQ L    +    R  L  + L           T ++         
Sbjct: 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRE 524

Query: 529 T-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 566
           T        +  K  E L+  N  L  ++ ++  +   L
Sbjct: 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.2 bits (182), Expect = 5e-14
 Identities = 61/446 (13%), Positives = 130/446 (29%), Gaps = 41/446 (9%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
              PSL    + +N  +        L     +E L    S   I++++    +   L  L
Sbjct: 189 SLIPSLFHANVSYNLLS-------TLAIPIAVEELDA--SHNSINVVR--GPVNVELTIL 237

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            +     N L       ++  L  +D+S   +      +      M  L+ L +SN    
Sbjct: 238 KLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN---- 287

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N    L+     +  L+ L ++ N L   +         L  LY+ +N +     +  L
Sbjct: 288 -NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV----TLKL 341

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241
               +++ L LS+N +          N +R  +  AD +                     
Sbjct: 342 STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH-----------CKIDYQLEHG 390

Query: 242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAG 301
           L    S                +               T     +            L G
Sbjct: 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQG 450

Query: 302 PFRLPIHSHK-RLGMLDISNNNFRGHIPLEI--GDILPSLHVFNISMNALDGSIPSSFGN 358
             +L    ++ R  +  ++N   +    L+    +I  +L  + +  + L  S  +    
Sbjct: 451 NEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV 510

Query: 359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEG 418
              L+       + T              E L   N +L+  + ++    A L       
Sbjct: 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570

Query: 419 NHFIGEISQSLSKCSSLEGLFLNNNN 444
              + ++    ++      +  ++++
Sbjct: 571 RQKVKQLEAKKNRNPDTRRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 18/189 (9%)

Query: 403 SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
           S          + ++               ++ + +   N+ +       L    +++ +
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISG-------------RLDLSCNKLIGPIP 509
            + +  +E      F     +Q L +  N I                L L  N  +  +P
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLP 139

Query: 510 PKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 568
             I  N  ++ TL++S+N+L      TF     +++L LS+N+L   +   L  + +L  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFH 196

Query: 569 FSVAYNNLS 577
            +V+YN LS
Sbjct: 197 ANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 67/420 (15%), Positives = 125/420 (29%), Gaps = 52/420 (12%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
                L  L L  NN TD A     L ++  L  + L  S   +  +             
Sbjct: 229 PVNVELTILKLQHNNLTDTAW----LLNYPGLVEVDL--SYNELEKIMYHP--------- 273

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                          F   + LE L +S+ R+      L + G+ +P+LK L LS+    
Sbjct: 274 ---------------FVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH---- 310

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N    +++       L+ LY+  N +  +L   L+   +L+ L +S+N    +   +  
Sbjct: 311 -NHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALF 366

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241
            ++     +  ++ H +I   LE              +      + Q  +LT+   ++ R
Sbjct: 367 RNVARP-AVDDADQHCKIDYQLEHGLCCK------ESDKPYLDRLLQYIALTSVVEKVQR 419

Query: 242 LSLSSSYGDGFIFPKFLYHQ-HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLA 300
                S  D     + L H         L   +        L     +L    +  + L 
Sbjct: 420 AQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLL 479

Query: 301 GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMN 360
                 I ++ R   L             ++   L     F +           +     
Sbjct: 480 QGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR--RTEADAKQK 537

Query: 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH 420
               L+  N  L  ++    A      +   L    +K     +N N           +H
Sbjct: 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 11/113 (9%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLS 524
              +++   P   C    LQ   +  +       +           +   L   + +   
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDV-----HIDMQTQDVYFGFEDITLNNQKIVTFK 59

Query: 525 HNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           ++ +     +   + + VE L+L++ ++     +      T++   + +N + 
Sbjct: 60  NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (303), Expect = 4e-29
 Identities = 68/464 (14%), Positives = 143/464 (30%), Gaps = 62/464 (13%)

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
           +    +   + D+ L+ +L     +  +++ L +S N L+  IS++ L   T +E L LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 194 NNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFI 253
           +N          L + S L+    +NN +  E+    S+       +  ++S        
Sbjct: 67  SNVLY---ETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIE--TLHAANNNISRVSCSRGQ 120

Query: 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHKR 312
             K +     L    ++ +              ++++ L L  + +    F     S   
Sbjct: 121 GKKNI----YLANNKITML------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
           L  L++  N     +  ++      L   ++S N L   +   F +   +  + L NN+L
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 373 TGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKC 432
              I + L     NLE   L  N        R+F   N     +          Q+  +C
Sbjct: 227 V-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492
           +                  +   L  L                   +     +L    + 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIAL-------------------KRKEHALLSGQGSE 324

Query: 493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
                          +  +  N  R + ++         I       +   +L+     L
Sbjct: 325 TER------------LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYE 596
           + ++ +       L+        L   + + E Q AT  ++  +
Sbjct: 373 DEQVSNGRRAHAELD------GTLQQAVGQIELQHATEEQSPLQ 410

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (299), Expect = 1e-28
 Identities = 67/495 (13%), Positives = 147/495 (29%), Gaps = 74/495 (14%)

Query: 103 IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL 162
           I ++    K   +++S    +  + L     S  +++EL ++ N L       LA  T L
Sbjct: 5   IKQNGNRYKIEKVTDS----SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
            +L +S N L     +  L  L+++  L L+NN+      ++ L     ++  +A NN +
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNI 111

Query: 223 NAEITQSHSLTAPNFQ-LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW 281
           +        ++    Q    + L+++                     ++ +         
Sbjct: 112 S-------RVSCSRGQGKKNIYLANN--------------------KITML------RDL 138

Query: 282 LLENNTKLRQLSLVNDSLAG-PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHV 340
                ++++ L L  + +    F     S   L  L++  N     +  ++      L  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKT 195

Query: 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH 400
            ++S N L   +   F +   +  + L NN+L   I + L     NLE   L  N     
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-C 251

Query: 401 MFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQ 460
              R+F   N     +          Q+  +C+                  +   L  L+
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 461 YIIMPNNHLEG----PIPVEFCQLDLLQILDISDNNISG-------------RLDLSCNK 503
                    +G     +  E       + +D                      L+     
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 504 LIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK-IPHQLVE 562
           L   +         +             +         ++ L     +     +  Q V+
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 563 LKTLEVFSVAYNNLS 577
              +  + +  +  +
Sbjct: 431 NNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (250), Expect = 2e-22
 Identities = 68/457 (14%), Positives = 140/457 (30%), Gaps = 70/457 (15%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
            S  ++  L L  N  + I  +A +L  FT LE L+L  SS  +     + S   +L+ L
Sbjct: 31  QSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNL--SSNVLYETLDLES-LSTLRTL 85

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            ++   V  L          S+E L  ++  I+      ++        K + L+N    
Sbjct: 86  DLNNNYVQEL------LVGPSIETLHAANNNIS------RVSCSRGQGKKNIYLAN---- 129

Query: 122 TNS-SRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLTGSISSS 179
            N  + + D        +Q L +  N++   +     A+  +L  L + YN +       
Sbjct: 130 -NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVK 185

Query: 180 PLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 238
             V    ++ L LS+N    +    +     + +      NN+L                
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLVL-------------- 228

Query: 239 LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS 298
                            K L    +LE+ DL     +          N +++ ++    +
Sbjct: 229 ---------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQT 271

Query: 299 LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS----IPS 354
           +               +           +P    D L +L     ++ +  GS    +  
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL 414
              N    R +D    Q    + + + +      +L     +L   + +     A L   
Sbjct: 331 ERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 415 QLEGNH--FIGEISQSLSKCSSLEGLFLNNNNLSGKI 449
             +      +   ++  S    L  +      +  + 
Sbjct: 390 LQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 9e-11
 Identities = 38/375 (10%), Positives = 88/375 (23%), Gaps = 49/375 (13%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
                   +YL  N  T +                                     ++ L
Sbjct: 117 SRGQGKKNIYLANNKITMLRD-----LDEGCR----------------------SRVQYL 149

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            +   E++ +   +      +LEHL++    I         +      LK L LS+    
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS---- 200

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N    +     S   +  + + +N L   +   L    +L    +  N           
Sbjct: 201 -NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241
                ++ +          ++ +     +   + +        ++    +      +   
Sbjct: 259 SKNQRVQTVAKQTVKK---LTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKE 314

Query: 242 LSLSSSYGDGF-IFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLA 300
            +L S  G           +Q      D    +        +         L     +L 
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALD 373

Query: 301 GPFRLPIHSHKRL--GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGN 358
                   +H  L   +          H   E   +     +        +  +      
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK---RYEEMYVEQQSVQ 430

Query: 359 MNFLRILDLSNNQLT 373
            N +R  D+  ++ T
Sbjct: 431 NNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 571
             N  R +   ++ + L  ++ S   +  +V+ LDLS N L+      L     LE+ ++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 572 AYNNLSG 578
           + N L  
Sbjct: 66  SSNVLYE 72

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 7e-29
 Identities = 66/342 (19%), Positives = 116/342 (33%), Gaps = 62/342 (18%)

Query: 304 RLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLR 363
           ++    +    +L++  +     +P  +      +    I  N L  S+P+       LR
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LR 84

Query: 364 ILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIG 423
            L++S NQLT  +P     G + L         L           + L  L + GN  + 
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQ-LT 134

Query: 424 EISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ---L 480
            +         L+ L +++N L+  +P    +L +L      NN L   +P+       L
Sbjct: 135 SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPMLPSGLQEL 186

Query: 481 DL--------------LQILDISDNNISG---------RLDLSCNKLIGPIPPKIGNLTR 517
            +              L  L   +N ++           L +S N+L   +P     L  
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVLPSELK- 244

Query: 518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
              L +S N LT S+P   S L     L +  N+L  ++P  L+ L +    ++  N LS
Sbjct: 245 --ELMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

Query: 578 GEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEAS 619
            E      +  T                    R    +  A+
Sbjct: 298 -ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (265), Expect = 4e-24
 Identities = 79/403 (19%), Positives = 133/403 (33%), Gaps = 65/403 (16%)

Query: 133 CSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYL 192
           C       L + ++ L  +LP CL     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 193 SNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDG 251
           S N    +P+    L     L IF      L A  +    L     QL+ L +       
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP---- 141

Query: 252 FIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHK 311
                       L+   +S  ++    P       ++L +L   N+ L     LP     
Sbjct: 142 -----------GLQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLP-MLPS 181

Query: 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
            L  L +S+N     +P    + L  L  +N  + +L             L+ L +S N+
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNR 232

Query: 372 LTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSK 431
           LT  +P   +     L+ L++S N L     S     + L+SL +  N  +  + +SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQ-LTRLPESLIH 282

Query: 432 CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN---HLEGPIPVEFCQLDLLQILDI 488
            SS   + L  N LS +  + L ++T       P           P E   L L     +
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 489 SDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS 531
                                   G        +L  + L+ +
Sbjct: 343 VPAREGEPAPAD-------RWHMFGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 3e-22
 Identities = 64/315 (20%), Positives = 112/315 (35%), Gaps = 63/315 (20%)

Query: 264 LEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF 323
               ++    +    P  L  +   +  L + +++L     LP      L  L++S N  
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 324 RGHIPLEIGDILPSLHVFNISMNALDG----------------SIPSSFGNMNFLRILDL 367
              +P+     L  L +F+  +  L                  S+P        L+ L +
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG---LQELSV 148

Query: 368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQ 427
           S+NQL   +P   +     L  L   NN L     S     + L  L +  N  +  +  
Sbjct: 149 SDNQLA-SLPALPS----ELCKLWAYNNQLT----SLPMLPSGLQELSVSDNQ-LASLPT 198

Query: 428 SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 487
             S    L  L+  NN L+  +P     L  L   I+  N L   +PV   +L   + L 
Sbjct: 199 LPS---ELYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLTS-LPVLPSEL---KELM 247

Query: 488 ISDNNISG---------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN 538
           +S N ++           L +  N+L   +P  + +L+   T+NL  N L+     T   
Sbjct: 248 VSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS---ERTLQA 303

Query: 539 LKHVESLDLSNNKLN 553
           L+ + S    +  + 
Sbjct: 304 LREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 78/434 (17%), Positives = 126/434 (29%), Gaps = 97/434 (22%)

Query: 151 SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHS 210
            +  CL N     +L V  + LT    + P      I  L + +N+              
Sbjct: 33  KMRACLNN--GNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNL------------- 73

Query: 211 RLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLS 270
                      L A   +  +L     QL+ L            P       +L      
Sbjct: 74  ---------TSLPALPPELRTLEVSGNQLTSL------------PVLPPGLLELSIFSNP 112

Query: 271 HIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLE 330
                    T L    + L +L +  + L     LP      L  L +S+N     +P  
Sbjct: 113 L--------THLPALPSGLCKLWIFGNQLT---SLP-VLPPGLQELSVSDNQLA-SLPAL 159

Query: 331 IGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESL 390
                  L       N L  S+P        L+ L +S+NQL   +P   +     L  L
Sbjct: 160 PS----ELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPS----ELYKL 206

Query: 391 VLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP 450
              NN L     S     + L  L + GN  +  +    S    L+ L ++ N L+  +P
Sbjct: 207 WAYNNRLT----SLPALPSGLKELIVSGNR-LTSLPVLPS---ELKELMVSGNRLT-SLP 257

Query: 451 RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPP 510
                L  L    +  N L   +P     L                ++L  N L      
Sbjct: 258 MLPSGLLSL---SVYRNQLTR-LPESLIHLSSET-----------TVNLEGNPLSERTLQ 302

Query: 511 KIGNLTRIQTLN---LSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG----KIPHQLVEL 563
            +  +T     +   +  +    S P     L    +  L   +          H   + 
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

Query: 564 KTLEVFSVAYNNLS 577
              + FS+  + LS
Sbjct: 363 DNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 5e-13
 Identities = 52/313 (16%), Positives = 91/313 (29%), Gaps = 51/313 (16%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELH-----------SFTNLEYLSLDFSSLHISLLQ 49
                 L+       +   + +   +L                L+ LS+  +      L 
Sbjct: 100 PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-----LA 154

Query: 50  SIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPS 109
           S+ ++   L  L     ++  L           L+ L +S  +       L  +      
Sbjct: 155 SLPALPSELCKLWAYNNQLTSL-----PMLPSGLQELSVSDNQ-------LASLPTLPSE 202

Query: 110 LKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSY 169
           L  L   N     N    L         L+EL ++ N L  SLP      + L+ L VS 
Sbjct: 203 LYKLWAYN-----NRLTSLPALPSG---LKELIVSGNRLT-SLP---VLPSELKELMVSG 250

Query: 170 NQLTGSISSSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQ 228
           N+LT S+        + +  L +  N    +P   E L + S       + N L+    Q
Sbjct: 251 NRLT-SLPML----PSGLLSLSVYRNQLTRLP---ESLIHLSSETTVNLEGNPLSERTLQ 302

Query: 229 SH-SLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW-LLENN 286
           +   +T+       +      G          H    ++   +          W +    
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

Query: 287 TKLRQLSLVNDSL 299
                 SL  D L
Sbjct: 363 DNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 470 EGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT 529
             P      +  ++Q +    NN +  L++  + L   +P  +     I TL +  N+LT
Sbjct: 18  AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT 74

Query: 530 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWE 584
            S+P+    L+   +L++S N+L   +P     L  L +FS    +L        
Sbjct: 75  -SLPALPPELR---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (284), Expect = 9e-28
 Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 25/243 (10%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT-G 374
           +  ++      +P     I  S     +  N L       F  +  L  L LS+N L+  
Sbjct: 12  IRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 375 EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEISQS--LSK 431
                   G  +L+ L LS N +     S NF  L  L  L  + ++ + ++S+      
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS 124

Query: 432 CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP-NNHLEGPIPVEFCQLDLLQILDISD 490
             +L  L +++ +           L+ L+ + M  N+  E  +P  F +L  L  LD+S 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 491 NNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN 549
             +              + P    +L+ +Q LN+SHN+        +  L  ++ LD S 
Sbjct: 185 CQLEQ------------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 550 NKL 552
           N +
Sbjct: 233 NHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 15/223 (6%)

Query: 253 IFPKFLYHQHDLEYADLSHIKMN-GEFPTWLLENNTKLRQLSLVN---DSLAGPFRLPIH 308
           +          L    LS   ++     +      T L+ L L      +++  F     
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---- 98

Query: 309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLS 368
             ++L  LD  ++N +      +   L +L   +IS      +    F  ++ L +L ++
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158

Query: 369 NNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFNLANLMSLQLEGNHFIGEI 425
            N         +     NL  L LS   L+      F+   +L++L  L +  N+F    
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLD 215

Query: 426 SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDL-TRLQYIIMPNN 467
           +      +SL+ L  + N++     + L    + L ++ +  N
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 41/225 (18%), Positives = 71/225 (31%), Gaps = 38/225 (16%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASI-FPSLKN 60
           G   S   L L  N    +          T L  LSL  + L      S +     SLK 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGV--FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           L +S   V  +     F   + LEHLD   + +                           
Sbjct: 83  LDLSFNGVITMSSN--FLGLEQLEHLDFQHSNL--------------------------- 113

Query: 121 GTNSSRILDQGL-CSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
                ++ +  +  SL +L  L ++    R +       ++SL +L ++ N    +    
Sbjct: 114 ----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNA 224
               L ++  L LS       +S     + S L++    +N   +
Sbjct: 170 IFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS 213

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 51/263 (19%), Positives = 81/263 (30%), Gaps = 33/263 (12%)

Query: 137 HLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLT-GSISSSPLVHLTSIEKLYLSNN 195
               L +  N L+         +T L  L +S N L+     S      TS++ L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 196 HFRIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIF 254
                 ++   F    +L+     ++ L        S+      L  L +S ++     F
Sbjct: 89  GVI---TMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTR-VAF 142

Query: 255 PKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLG 314
                    LE   ++       F   +      L  L L    L               
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------- 188

Query: 315 MLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG 374
              +S   F           L SL V N+S N         +  +N L++LD S N +  
Sbjct: 189 --QLSPTAFNS---------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 375 EIPEHLAVGCVNLESLVLSNNSL 397
              + L     +L  L L+ N  
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  114 bits (288), Expect = 3e-27
 Identities = 60/330 (18%), Positives = 117/330 (35%), Gaps = 47/330 (14%)

Query: 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
           +   +  +       +P     I  +    N+  N +      +F +++ L +L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 372 LTGEIPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLANLMSLQLEGNHFIGEI-SQ 427
           +  +I      G  +L +L L +N L       F     L+ L  L L  N  I  I S 
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNP-IESIPSY 165

Query: 428 SLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 486
           + ++  SL  L L        I       L  L+Y+ +   +++  +P     L  L+ L
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEEL 223

Query: 487 DISDNNISGRLDLSCNKLIGPIPPK-IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL 545
           ++S N+               I P     L+ ++ L + ++ ++    + F  L  +  L
Sbjct: 224 EMSGNHFPE------------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 546 DLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLS-----GEIPEWEAQFATFNENSYEGNT 599
           +L++N L+  +PH L   L+ L    + +N  +       +  W  ++   N        
Sbjct: 272 NLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTC----- 325

Query: 600 FLCGLPLPICRSPATMSEASIGNERDDNLI 629
                    C +P  M    +      +  
Sbjct: 326 ------CGRCHAPMHMRGRYLVEVDQASFQ 349

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 7e-17
 Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 19/244 (7%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIA-SIFPSLKNLS 62
             +   L L+ NN   I           +LE L L      I  ++  A +   SL  L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADT--FRHLHHLEVLQL--GRNSIRQIEVGAFNGLASLNTLE 129

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
           +    +  +  G  F +   L  L + +  I    S        +PSL  L L    +  
Sbjct: 130 LFDNWLTVIPSG-AFEYLSKLRELWLRNNPI---ESIPSYAFNRVPSLMRLDLGELKK-- 183

Query: 123 NSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
               I +     L +L+ L +   +++  +P  L  +  L  L +S N     I      
Sbjct: 184 -LEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFH 239

Query: 183 HLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL 242
            L+S++KL++ N+   + I        + L      +N L+   +  H L  P   L  L
Sbjct: 240 GLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVEL 295

Query: 243 SLSS 246
            L  
Sbjct: 296 HLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 28/225 (12%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDF---SSLHISLLQSIASIFPSLK 59
               L  L L  N+   I   A   +   +L  L L     + +     +        L+
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDNWLTVIPSGAFEY----LSKLR 150

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSS----TRIALNTSFLQIIGESMPSLKYLSL 115
            L +    +  +     F    SL  LD+        I+    F     E + +LKYL+L
Sbjct: 151 ELWLRNNPIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGA-F-----EGLFNLKYLNL 203

Query: 116 SNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGS 175
                   + + +   L  L+ L+EL M+ N      P     ++SL+ L+V  +Q++  
Sbjct: 204 GM-----CNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-L 256

Query: 176 ISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
           I  +    L S+ +L L++N+    +  +       L   +  +N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 46/261 (17%), Positives = 87/261 (33%), Gaps = 33/261 (12%)

Query: 48  LQSI-ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIG 104
           L  +   I  + + L++    +  +     F H   LE L +    I      +F     
Sbjct: 66  LSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF----- 119

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLR 163
             + SL  L L +     N   ++  G    L  L+EL++ +N +     +    + SL 
Sbjct: 120 NGLASLNTLELFD-----NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 164 ILYVS-YNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
            L +    +L   IS      L +++ L L   + +    +  L     L+      N  
Sbjct: 175 RLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF 230

Query: 223 NAEITQSHSLTAPNF----QLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEF 278
                    +   +F     L +L + +S     I          L   +L+H  ++   
Sbjct: 231 -------PEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 279 PTWLLENNTKLRQLSLVNDSL 299
           P  L      L +L L ++  
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (287), Expect = 3e-27
 Identities = 103/518 (19%), Positives = 167/518 (32%), Gaps = 111/518 (21%)

Query: 77  FPHFKSLEHLDMSSTRIA----------LNTSFLQIIGESMPSLKYLSLSNSTRGTNSSR 126
             + KS      + +                +  ++          L L+N         
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN-----LGLS 84

Query: 127 ILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTS 186
            L +      HL+ L  + N L   LP    ++ SL +   +   L+             
Sbjct: 85  SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------- 132

Query: 187 IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 246
           +E L +SNN       L  L N S LKI   DNN L                        
Sbjct: 133 LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKK---------------------- 167

Query: 247 SYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLP 306
                   P        LE+    + ++  E P   L+N   L  +   N+SL     LP
Sbjct: 168 -------LPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKKLPDLP 214

Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD 366
           +     L  +   NN        E+ + LP L       N L  ++P    +   L  L+
Sbjct: 215 LS----LESIVAGNNIL--EELPELQN-LPFLTTIYADNNLL-KTLPDLPPS---LEALN 263

Query: 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS 426
           + +N LT ++PE       +L  L +S N         +    NL  L    N     I 
Sbjct: 264 VRDNYLT-DLPELPQ----SLTFLDVSENIFS----GLSELPPNLYYLNASSNE----IR 310

Query: 427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 486
                  SLE L ++NN L  ++P     L RL   I   NHL   +P     L   + L
Sbjct: 311 SLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQNL---KQL 362

Query: 487 DISDNNIS------GRL-DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL 539
            +  N +         + DL  N  +  +P    NL   + L++  N L    P    ++
Sbjct: 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL---KQLHVETNPLR-EFPDIPESV 418

Query: 540 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           +    L +++ ++             LE     +++  
Sbjct: 419 ED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (285), Expect = 7e-27
 Identities = 98/461 (21%), Positives = 162/461 (35%), Gaps = 84/461 (18%)

Query: 133 CSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYL 192
            S   LQE     ++L   +P    N+ S    Y ++++   +           +    L
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRL 65

Query: 193 SNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGF 252
            +   R       L   + L +     + L        SL A    L+ L          
Sbjct: 66  RDCLDR---QAHEL-ELNNLGL-----SSLPELPPHLESLVASCNSLTEL---------- 106

Query: 253 IFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLP-IHSHK 311
             P+       L   + +           L +    L  L + N+ L    +LP + +  
Sbjct: 107 --PELPQSLKSLLVDNNNLKA--------LSDLPPLLEYLGVSNNQLE---KLPELQNSS 153

Query: 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
            L ++D+ NN+ +     ++ D+ PSL       N L         N+ FL  +   NN 
Sbjct: 154 FLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNS 206

Query: 372 LTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSK 431
           L  ++P+      ++LES+V  NN L+        NL  L ++  + N  +  +      
Sbjct: 207 LK-KLPDLP----LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNL-LKTLPDLP-- 256

Query: 432 CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491
             SLE L + +N L+  +P     LT L       + L    P        L  L+ S N
Sbjct: 257 -PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSN 307

Query: 492 NISG---------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV 542
            I            L++S NKLI  +P     L   + L  S N L   +P    NLK  
Sbjct: 308 EIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNLK-- 360

Query: 543 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
             L +  N L  + P     ++ L +     N+   E+PE 
Sbjct: 361 -QLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (269), Expect = 8e-25
 Identities = 96/554 (17%), Positives = 166/554 (29%), Gaps = 112/554 (20%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
           S   L       +N T++     E  +  +       +S    +           +    
Sbjct: 9   SNTFLQEPLRHSSNLTEMP---VEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMAVSR 64

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
           +  C              +    L++++         L  + E  P L+ L  S      
Sbjct: 65  LRDC------------LDRQAHELELNNLG-------LSSLPELPPHLESLVASC----- 100

Query: 123 NSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
           NS   L +   SL  L         L    P        L  L VS NQL        L 
Sbjct: 101 NSLTELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE---KLPELQ 150

Query: 183 HLTSIEKLYLSNNHF-RIPISLEPLFNHSRLKIFYADNNELNA--EITQSHSLTAPNFQL 239
           + + ++ + + NN   ++P           L+   A NN+L    E+     LT      
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLP------PSLEFIAAGNNQLEELPELQNLPFLT--AIYA 202

Query: 240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 299
              SL          P        LE     +  +  E P   L+N   L  +   N+ L
Sbjct: 203 DNNSLKK-------LPDLPLS---LESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLL 249

Query: 300 AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM 359
                LP      L  L++ +N     +P      L  L V     + L    P+     
Sbjct: 250 K---TLP-DLPPSLEALNVRDNYLT-DLPELPQS-LTFLDVSENIFSGLSELPPN----- 298

Query: 360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN 419
             L  L+ S+N++   + +       +LE L +SNN L             L  L    N
Sbjct: 299 --LYYLNASSNEIR-SLCDLPP----SLEELNVSNNKLI----ELPALPPRLERLIASFN 347

Query: 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ 479
           H + E+ +      +L+ L +  N L  + P     +  L+     N+HL   +P     
Sbjct: 348 H-LAEVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM----NSHLA-EVPELPQN 397

Query: 480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL 539
           L   + L +  N +               P    ++     L ++   +           
Sbjct: 398 L---KQLHVETNPLRE------------FPDIPESVED---LRMNSERVVDPYEFAHETT 439

Query: 540 KHVESLDLSNNKLN 553
             +E     ++  +
Sbjct: 440 DKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 32/203 (15%), Positives = 62/203 (30%), Gaps = 42/203 (20%)

Query: 404 RNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII 463
           RN +   L       ++ + E+        S    +   +      P   G+   +    
Sbjct: 6   RNVSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 464 MPNNHLEGPIPVEFCQLDLLQILDISDNNISG---------RLDLSCNKLIGPIPPKIGN 514
           + +                   L++++  +S           L  SCN L   +P    +
Sbjct: 65  LRDCLDRQ-----------AHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQS 112

Query: 515 LTRIQTLNLSHNDLTGSIPS---------------TFSNLKHVESLDLSNNKLNGKIPHQ 559
           L  +   N +   L+   P                   N   ++ +D+ NN L  K+P  
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 560 LVELKTLEVFSVAYNNLSGEIPE 582
              L+ +   +   N L  E+PE
Sbjct: 172 PPSLEFI---AAGNNQLE-ELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 9e-11
 Identities = 53/376 (14%), Positives = 112/376 (29%), Gaps = 76/376 (20%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
            +   L  + +  N+   +           +LE+++    +  +  L  + +  P L  +
Sbjct: 150 QNSSFLKIIDVDNNSLKKL------PDLPPSLEFIAA--GNNQLEELPELQN-LPFLTAI 200

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                 +  L          SLE +   +  +           +++P L  +   N    
Sbjct: 201 YADNNSLKKL-----PDLPLSLESIVAGNNILEELPEL-----QNLPFLTTIYADN---- 246

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N  + L     S   L+ L + DN L   LP    ++T L +    ++ L+        
Sbjct: 247 -NLLKTLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELP----- 296

Query: 182 VHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELN---AEITQSHSLTAPNF 237
               ++  L  S+N  R +            L+     NN+L    A   +   L A   
Sbjct: 297 ---PNLYYLNASSNEIRSLCDLP------PSLEELNVSNNKLIELPALPPRLERLIASFN 347

Query: 238 QLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVND 297
            L+ +            P+   +   L+   + +  +  EFP         +  L + + 
Sbjct: 348 HLAEV------------PELPQN---LKQLHVEYNPLR-EFPDIP----ESVEDLRMNSH 387

Query: 298 SLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFG 357
               P        + L  L +  N  R   P        S+    ++   +      +  
Sbjct: 388 LAEVPELP-----QNLKQLHVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHE 437

Query: 358 NMNFLRILDLSNNQLT 373
             + L      ++   
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 46/222 (20%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           + + P L T+Y   N    +           +LE L++  +      L  +  +  SL  
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNY-----LTDLPELPQSLTF 281

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           L +S    +GL          +L +L+ SS  I       + + +  PSL+ L++SN   
Sbjct: 282 LDVSENIFSGLSE-----LPPNLYYLNASSNEI-------RSLCDLPPSLEELNVSN--- 326

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
             N    L         L+ L  + N L   +P    N   L+ L+V YN L       P
Sbjct: 327 --NKLIELPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIP 376

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
                S+E L ++++   +P           LK  + + N L
Sbjct: 377 ----ESVEDLRMNSHLAEVPELP------QNLKQLHVETNPL 408

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  111 bits (279), Expect = 2e-26
 Identities = 67/268 (25%), Positives = 105/268 (39%), Gaps = 31/268 (11%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           +     N R  +P     I  +  + N+  N +     +SF ++  L IL LS N +   
Sbjct: 48  VICVRKNLR-EVP---DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-T 102

Query: 376 IPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLANLMSLQLEGNHFIGEI-SQSLSK 431
           I      G  NL +L L +N L       F     L+ L  L L  N  I  I S + ++
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNP-IESIPSYAFNR 158

Query: 432 CSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 490
             SL  L L        I       L+ L+Y+ +   +L   IP     L  L  LD+S 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSG 216

Query: 491 NNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN 549
           N++S             I P     L  +Q L +  + +     + F NL+ +  ++L++
Sbjct: 217 NHLSA------------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 550 NKLNGKIPHQLVE-LKTLEVFSVAYNNL 576
           N L   +PH L   L  LE   + +N  
Sbjct: 265 NNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 6e-17
 Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 23/246 (9%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIA-SIFPSLKNLS 62
             +   L L  N    I   +       +LE L L  S  HI  ++  A +   +L  L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS--FKHLRHLEILQL--SRNHIRTIEIGAFNGLANLNTLE 118

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIGESMPSLKYLSLSNSTR 120
           +    +  +  G  F +   L+ L + +  I    + +F       +PSL+ L L    R
Sbjct: 119 LFDNRLTTIPNGA-FVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGELKR 172

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
               S I +     L +L+ L +A  +LR  +P  L  +  L  L +S N L+ +I    
Sbjct: 173 ---LSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGS 226

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS 240
              L  ++KL++  +  ++ I      N   L      +N L       H L  P   L 
Sbjct: 227 FQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHLE 282

Query: 241 RLSLSS 246
           R+ L  
Sbjct: 283 RIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIA-SIFPSLKNLSM 63
            +LNTL L  N  T I   A      + L+ L L   +  I  + S A +  PSL+ L +
Sbjct: 112 ANLNTLELFDNRLTTIPNGA--FVYLSKLKELWL--RNNPIESIPSYAFNRIPSLRRLDL 167

Query: 64  SGCEVNGL--VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                  L  +    F    +L +L+++   +    +        +  L  L LS     
Sbjct: 168 GEL--KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL-----TPLIKLDELDLSG---- 216

Query: 122 TNSSRILDQG-LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
            N    +  G    LMHLQ+L+M  + ++        N+ SL  + +++N LT  +    
Sbjct: 217 -NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL 274

Query: 181 LVHLTSIEKLYLSNN 195
              L  +E+++L +N
Sbjct: 275 FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 22/222 (9%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
               L  L L  N+   I   A   +   NL  L L  + L  ++          LK L 
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGA--FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSS----TRIALNTSFLQIIGESMPSLKYLSLSNS 118
           +    +  +     F    SL  LD+      + I+    F     E + +L+YL+L+  
Sbjct: 143 LRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYISEGA-F-----EGLSNLRYLNLAM- 194

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
                + R +   L  L+ L EL ++ N L    P     +  L+ L++  +Q+   I  
Sbjct: 195 ----CNLREI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248

Query: 179 SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
           +   +L S+ ++ L++N+  + +  +       L+  +  +N
Sbjct: 249 NAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 48/261 (18%), Positives = 95/261 (36%), Gaps = 33/261 (12%)

Query: 48  LQSI-ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIG 104
           L+ +   I  + + L++   ++  +     F H + LE L +S   I      +F     
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF----- 108

Query: 105 ESMPSLKYLSLSNSTRGTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR 163
             + +L  L L +     N  + I +     L  L+EL++ +N +     +    + SLR
Sbjct: 109 NGLANLNTLELFD-----NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 164 ILYVS-YNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
            L +    +L+  IS      L+++  L L+  + R    +  L    +L       N L
Sbjct: 164 RLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL 219

Query: 223 NAEITQSHSLTAPNF----QLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEF 278
                   ++   +F     L +L +  S     I      +   L   +L+H  +    
Sbjct: 220 -------SAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 279 PTWLLENNTKLRQLSLVNDSL 299
           P  L      L ++ L ++  
Sbjct: 271 PHDLFTPLHHLERIHLHHNPW 291

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (267), Expect = 2e-25
 Identities = 60/269 (22%), Positives = 104/269 (38%), Gaps = 35/269 (13%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           +  S+      +P    D+ P   + ++  N +       F N+  L  L L NN+++ +
Sbjct: 36  VQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-K 90

Query: 376 IPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFNLANLMSLQLEGNHFIGEISQ-SLSK 431
           I        V LE L LS N LK     M         L  L++  N  I ++ +   + 
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENE-ITKVRKSVFNG 143

Query: 432 CSSLEGLFLNNNNLSGKI--PRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489
            + +  + L  N L            + +L YI + + ++   IP        L  L + 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLD 200

Query: 490 DNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS 548
            N I+             +       L  +  L LS N ++     + +N  H+  L L+
Sbjct: 201 GNKITK------------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 549 NNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           NNKL  K+P  L + K ++V  +  NN+S
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 6e-25
 Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 18/245 (7%)

Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
            +L  L +S N  +  +P     +  +L    +  N +     S F  +N + +++L  N
Sbjct: 100 VKLERLYLSKNQLK-ELP---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 371 QLT-GEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QS 428
            L    I      G   L  + +++ ++   +        +L  L L+GN  I ++   S
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNK-ITKVDAAS 211

Query: 429 LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 488
           L   ++L  L L+ N++S      L +   L+ + + NN L   +P        +Q++ +
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 270

Query: 489 SDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSI--PSTFSNLKHVESLD 546
            +NNIS    +  N    P             ++L  N +      PSTF  +    ++ 
Sbjct: 271 HNNNIS---AIGSNDFCPPGYNT--KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 547 LSNNK 551
           L N K
Sbjct: 326 LGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 2e-23
 Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 36/261 (13%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           LD+ NN     I       L +LH   +  N +    P +F  +  L  L LS NQL  E
Sbjct: 57  LDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 376 IPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEGNHFIGEI--SQSLS 430
           +PE +      L+ L +  N    ++  +F+    L  ++ ++L  N        + +  
Sbjct: 115 LPEKMPK---TLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 431 KCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 490
               L  + + + N++  IP+ L     L  + +  N +          L+ L  L +S 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 491 NNISG-------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG------S 531
           N+IS               L L+ NKL+  +P  + +   IQ + L +N+++        
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 532 IPSTFSNLKHVESLDLSNNKL 552
            P   +       + L +N +
Sbjct: 285 PPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 49/253 (19%), Positives = 105/253 (41%), Gaps = 35/253 (13%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSI-ASIFPSLKNLS 62
             +L+TL L+ N  + I+  A        LE L L  +      L+ +   +  +L+ L 
Sbjct: 75  LKNLHTLILINNKISKISPGA--FAPLVKLERLYLSKNQ-----LKELPEKMPKTLQELR 127

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL----NTSFLQIIGESMPSLKYLSLSNS 118
           +   E+  + +   F     +  +++ +  +      N +F     + M  L Y+ +++ 
Sbjct: 128 VHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAF-----QGMKKLSYIRIAD- 180

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
                +   + QGL     L EL++  N +       L  + +L  L +S+N ++ ++ +
Sbjct: 181 ----TNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDN 233

Query: 179 SPLVHLTSIEKLYLSNNHF-RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF 237
             L +   + +L+L+NN   ++P     L +H  +++ Y  NN ++  I  +        
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYN 289

Query: 238 ----QLSRLSLSS 246
                 S +SL S
Sbjct: 290 TKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 52/352 (14%), Positives = 113/352 (32%), Gaps = 85/352 (24%)

Query: 80  FKSLEHLDMSSTRIAL--NTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH 137
                 LD+ + +I    +  F     +++ +L  L L N+      S+I       L+ 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDF-----KNLKNLHTLILINN----KISKISPGAFAPLVK 101

Query: 138 LQELYMADNDLRGSLPWCLANM-TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNH 196
           L+ LY++ N L+  LP     M  +L+ L V  N++T  +  S    L  +  + L  N 
Sbjct: 102 LERLYLSKNQLK-ELP---EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP 156

Query: 197 FRIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQ-LSRLSLSSSYGDGFIF 254
            +        F    +L      +  +        ++       L+ L            
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNI-------TTIPQGLPPSLTEL------------ 197

Query: 255 PKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLG 314
                    L+   ++ +          L+    L +L L  +S++              
Sbjct: 198 --------HLDGNKITKV------DAASLKGLNNLAKLGLSFNSIS-------------- 229

Query: 315 MLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT- 373
              + N +             P L   +++ N L   +P    +  +++++ L NN ++ 
Sbjct: 230 --AVDNGSLAN---------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

Query: 374 ----GEIPEHLAVGCVNLESLVLSNNSLKGHMFSRN--FNLANLMSLQLEGN 419
                  P        +   + L +N ++      +    +    ++QL   
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 32/228 (14%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLD---FSSLHISLLQSIASIFPSLKNL 61
             L  LYL  N   ++            L+ L +     + +  S+   +      +  +
Sbjct: 100 VKLERLYLSKNQLKELPEKM-----PKTLQELRVHENEITKVRKSVFNGL----NQMIVV 150

Query: 62  SMSG-CEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
            +      +  +    F   K L ++ ++ T I        I     PSL  L L     
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT------TIPQGLPPSLTELHLDG--- 201

Query: 121 GTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
             N  +++    L  L +L +L ++ N +       LAN   LR L+++ N+L   +   
Sbjct: 202 --NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 180 PLVHLTSIEKLYLSNNHFR-IPIS----LEPLFNHSRLKIFYADNNEL 222
            L     I+ +YL NN+   I  +           +        +N +
Sbjct: 259 -LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI 556
           +  S   L   +P  +        L+L +N +T      F NLK++ +L L NNK++   
Sbjct: 36  VQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92

Query: 557 PHQLVELKTLEVFSVAYNNLSGEIPE 582
           P     L  LE   ++ N L  E+PE
Sbjct: 93  PGAFAPLVKLERLYLSKNQLK-ELPE 117

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (271), Expect = 3e-25
 Identities = 66/416 (15%), Positives = 142/416 (34%), Gaps = 63/416 (15%)

Query: 138 LQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
                 A  +++ +       + +L  L    + +T     + +  LT + KL  ++N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 198 RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF-QLSRLSLSSSYGDGFIFPK 256
              I+   L  ++ L     D+N+L        +L      +L+ L+  ++     +   
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLT-------NLDVTPLTKLTYLNCDTNK----LTKL 121

Query: 257 FLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGML 316
            +     L Y + +   +        + +NT+L +L    +       L +    +L  L
Sbjct: 122 DVSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTL 175

Query: 317 DISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEI 376
           D S N       L++      L+  N   N +   +         L  LD S+N+LT EI
Sbjct: 176 DCSFNKITE---LDVSQ-NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EI 227

Query: 377 PEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLE 436
                     L     S N L     S    L+ L +L       + EI   L+  + L 
Sbjct: 228 DVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTD-LLEI--DLTHNTQLI 278

Query: 437 GLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496
                      ++   +   T+L  +      +     ++  Q   L  L +++  ++  
Sbjct: 279 YFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-E 332

Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
           LD+S             + T++++L+  +  +     S    +  + +   +  + 
Sbjct: 333 LDVS-------------HNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 56/290 (19%), Positives = 87/290 (30%), Gaps = 37/290 (12%)

Query: 289 LRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNAL 348
                     +     +       L  LD  N++      +E    L  L     + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 349 DGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL 408
             ++         L  L   +N+LT  +          L  L    N L     S     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVS---QN 126

Query: 409 ANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH 468
             L  L    N         +S  + L  L  + N    K+   +   T+L  +    N 
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 469 LEGPIPVEFCQLDLLQILDISDNNISG----------RLDLSCNKLIGPIPPKIGNLTRI 518
           +     ++  Q  LL  L+   NNI+            LD S NKL   I   +  LT++
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235

Query: 519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 568
              + S N LT    ST S L    +L      L         +L   + 
Sbjct: 236 TYFDCSVNPLTELDVSTLSKL---TTLHCIQTDLLEIDLTHNTQLIYFQA 282

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 6e-18
 Identities = 91/585 (15%), Positives = 167/585 (28%), Gaps = 154/585 (26%)

Query: 30  FTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMS 89
           F +    + +  +      + +     +L +L      +  +    G      L  L  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQL----ATLTSLDCHNSSITDM---TGIEKLTGLTKLICT 72

Query: 90  STRI-ALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDL 148
           S  I  L+ S          +L YL+  +     N    LD  +  L  L  L    N L
Sbjct: 73  SNNITTLDLS-------QNTNLTYLACDS-----NKLTNLD--VTPLTKLTYLNCDTNKL 118

Query: 149 RGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFN 208
              L   ++    L  L  + N LT       + H T + +L    N     I+   +  
Sbjct: 119 T-KLD--VSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKK---ITKLDVTP 168

Query: 209 HSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYAD 268
            ++L       N                 +++ L +S                       
Sbjct: 169 QTQLTTLDCSFN-----------------KITELDVS----------------------- 188

Query: 269 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIP 328
                            N  L +L+   +++    +L ++ + +L  LD S+N       
Sbjct: 189 ----------------QNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT---- 225

Query: 329 LEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE 388
                                  I      +  L   D S N LT E+          L 
Sbjct: 226 ----------------------EID--VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLT 257

Query: 389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGK 448
           +L      L     +   +   L+  Q EG   I E+   ++  + L  L      ++ +
Sbjct: 258 TLHCIQTDLLEIDLT---HNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-E 311

Query: 449 IPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPI 508
           +   L    +L Y+ + N  L     ++      L+ L   + +I    D          
Sbjct: 312 LD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQ---DF--------- 354

Query: 509 PPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK-----HVESLDLSNNKLNGKIPHQLVEL 563
              +G +  +     +          T +N         + LD   N +N  I      +
Sbjct: 355 -SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGV 411

Query: 564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPI 608
                 ++ + NLS + P     F + N       T     P PI
Sbjct: 412 YDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 62/401 (15%), Positives = 120/401 (29%), Gaps = 71/401 (17%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSL-HISLLQSIASIFPSLKN 60
                L  L    NN T +     +L   TNL YL+ D + L ++ +          L  
Sbjct: 61  EKLTGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNLDVTP-----LTKLTY 110

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           L+    ++  L           L +L+ +   +       +I       L  L    + +
Sbjct: 111 LNCDTNKLTKLD----VSQNPLLTYLNCARNTLT------EIDVSHNTQLTELDCHLNKK 160

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
            T         +     L  L  + N +   L   ++    L  L    N +T       
Sbjct: 161 ITKLD------VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT----KLD 207

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN----AEITQSHSLTAPN 236
           L     +  L  S+N     ++   +   ++L  F    N L     + +++  +L    
Sbjct: 208 LNQNIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L  + L+ +                L Y      +   E     + +NT+L  L    
Sbjct: 264 TDLLEIDLTHNT--------------QLIYFQAEGCRKIKELD---VTHNTQLYLLDCQA 306

Query: 297 DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSF 356
             +     L +  + +L  L ++N      + +        L   +     +      S 
Sbjct: 307 AGIT---ELDLSQNPKLVYLYLNNTELT-ELDVS---HNTKLKSLSCVNAHIQ-DFS-SV 357

Query: 357 GNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
           G +  L     +  Q      E L     N  ++ +S + L
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLT---NNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 35/251 (13%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +     L  L    N  T+I     ++   T L Y     S   ++ L    S    L  
Sbjct: 208 LNQNIQLTFLDCSSNKLTEI-----DVTPLTQLTYFDC--SVNPLTEL--DVSTLSKLTT 258

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           L     ++  +       H   L +      R       L +       L  L       
Sbjct: 259 LHCIQTDLLEI----DLTHNTQLIYFQAEGCR---KIKELDV--THNTQLYLLDCQA--- 306

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
                  LD  L     L  LY+ + +L   L   +++ T L+ L      +      S 
Sbjct: 307 --AGITELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ---DFSS 356

Query: 181 LVHLTSIEKLYLSNNHF----RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
           +  + ++   + +        +  ++   L       +     N +N E           
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQAT 416

Query: 237 FQLSRLSLSSS 247
             ++  +LS+ 
Sbjct: 417 NTITWENLSTD 427

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (268), Expect = 1e-24
 Identities = 56/278 (20%), Positives = 94/278 (33%), Gaps = 36/278 (12%)

Query: 282 LLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF 341
             +   K        +       L      +   L ++  N    +P  +    P + V 
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHM 401
            I+ NAL  S+P    +   L  LD  +N+L+  +PE  A    +L+ L + NN L    
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--- 133

Query: 402 FSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQY 461
                  A L  +  + N     ++      +SLE L + NN L+  +P     L  L  
Sbjct: 134 -MLPELPALLEYINADNNQ----LTMLPELPTSLEVLSVRNNQLT-FLPELPESLEALD- 186

Query: 462 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTL 521
             +  N LE  +P    +    +  +I             N++   IP  I +L    T+
Sbjct: 187 --VSTNLLES-LPAVPVRNHHSEETEI-------FFRCRENRITH-IPENILSLDPTCTI 235

Query: 522 NLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 559
            L  N L+  I  + S               +     Q
Sbjct: 236 ILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 99.3 bits (247), Expect = 7e-22
 Identities = 51/315 (16%), Positives = 103/315 (32%), Gaps = 48/315 (15%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
           L  N+    +S         +       ++  +   + N     +   +   +       
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKW----EKQALPGENRNEAVSLLKECL---INQFSELQ 65

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF 402
           ++   L  S+P +      + +L+++ N L   +PE  A    +LE L   +N L     
Sbjct: 66  LNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA----SLEYLDACDNRLS---- 113

Query: 403 SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
           +     A+L  L ++ N     + +  +    LE +  +NN L+  +P     L  L   
Sbjct: 114 TLPELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVL--- 165

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT-- 520
            + NN L   +P      + L+ LD+S N +              +P         +   
Sbjct: 166 SVRNNQLTF-LPE---LPESLEALDVSTNLLES------------LPAVPVRNHHSEETE 209

Query: 521 --LNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 578
                  N +T  IP    +L    ++ L +N L+ +I   L +      +       S 
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 579 EIPEWEAQFATFNEN 593
              +         + 
Sbjct: 269 SDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 41/284 (14%), Positives = 81/284 (28%), Gaps = 53/284 (18%)

Query: 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL-KGHMFSRNFNLANLMSLQL 416
           N NF    +   N ++              E   L   +  +     +   +     LQL
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE 476
              + +  +  +L     +  L +  N L   +P     L  L      +N L   +P  
Sbjct: 67  NRLN-LSSLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPEL 118

Query: 477 FCQLDLLQILDISDNNISG---------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHND 527
                 L+ LD+ +N ++           ++   N+L   +P    +L     L++ +N 
Sbjct: 119 PAS---LKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPELPTSLEV---LSVRNNQ 171

Query: 528 LTGSIPSTFSNLKH------------------------VESLDLSNNKLNGKIPHQLVEL 563
           LT  +P    +L+                                 N++   IP  ++ L
Sbjct: 172 LT-FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229

Query: 564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP 607
                  +  N LS           T   + +    +       
Sbjct: 230 DPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.4 bits (172), Expect = 9e-13
 Identities = 48/318 (15%), Positives = 102/318 (32%), Gaps = 51/318 (16%)

Query: 146 NDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR-IPISLE 204
           +                 +   + N+    +       +    +L L+  +   +P +L 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLL---KECLINQFSELQLNRLNLSSLPDNLP 79

Query: 205 PLFNHSRLKIFYADNNELN---AEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQ 261
           P     ++ +     N L            L A + +LS L            P+     
Sbjct: 80  P-----QITVLEITQNALISLPELPASLEYLDACDNRLSTL------------PELP--- 119

Query: 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNN 321
             L++ D+ + ++     T L E    L  ++  N+ L     LP      L +L + NN
Sbjct: 120 ASLKHLDVDNNQL-----TMLPELPALLEYINADNNQLT---MLP-ELPTSLEVLSVRNN 170

Query: 322 NFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLR----ILDLSNNQLTGEIP 377
                    + ++  SL   ++S N L+ S+P+     +             N++T  IP
Sbjct: 171 QLT-----FLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIP 223

Query: 378 EHLAVGCVNLESLVLSNNSLK---GHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS 434
           E++        +++L +N L        S+     +    ++  +   G+ +      + 
Sbjct: 224 ENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 435 LEGLFLNNNNLSGKIPRW 452
               +   N  S     W
Sbjct: 283 AVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 59/302 (19%), Positives = 93/302 (30%), Gaps = 55/302 (18%)

Query: 6   SLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSG 65
                 L   N  +  +  +E         L L  + L++S L    ++ P +  L ++ 
Sbjct: 35  KWEKQALPGENRNEAVSLLKEC-LINQFSELQL--NRLNLSSLP--DNLPPQITVLEITQ 89

Query: 66  CEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSS 125
             +  L          SLE+LD    R       L  + E   SLK+L + N     N  
Sbjct: 90  NALISL-----PELPASLEYLDACDNR-------LSTLPELPASLKHLDVDN-----NQL 132

Query: 126 RILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLT 185
            +L +       L+ +   +N L   LP      TSL +L V  NQLT  +   P     
Sbjct: 133 TMLPELPAL---LEYINADNNQLT-MLP---ELPTSLEVLSVRNNQLT-FLPELP----E 180

Query: 186 SIEKLYLSNNHFR-IPISLEPLFNHSRL-KIFYADNN---ELNAEITQSHSLT------- 233
           S+E L +S N    +P       +       F    N    +   I              
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240

Query: 234 ----APNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKL 289
                    LS+ +    Y    I+      Q +  +  L+          W  EN    
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA-----WFPENKQSD 295

Query: 290 RQ 291
             
Sbjct: 296 VS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 5e-11
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 40/225 (17%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
            P +  L +  N    +           +LEYL    +      L ++  +  SLK+L +
Sbjct: 79  PPQITVLEITQNALISL------PELPASLEYLDACDNR-----LSTLPELPASLKHLDV 127

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLDMSSTRIA-----------LNTSFLQI--IGESMPSL 110
              ++  L           LE+++  + ++            L+    Q+  + E   SL
Sbjct: 128 DNNQLTMLPELPA-----LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESL 182

Query: 111 KYLSLSNSTRGTNSSRILDQGLCSLMHLQE----LYMADNDLRGSLPWCLANMTSLRILY 166
           + L +S      N    L        H +E        +N +   +P  + ++     + 
Sbjct: 183 EALDVST-----NLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSR 211
           +  N L+ S     L   T+    +    +F +    +   +   
Sbjct: 237 LEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
              SL  L +  N  T +            LEY++ D + L       +  +  SL+ LS
Sbjct: 118 LPASLKHLDVDNNQLTMLPE------LPALLEYINADNNQL-----TMLPELPTSLEVLS 166

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRI-ALNTSFLQIIGESMPSLKYLSLSNSTRG 121
           +   ++  L         +SLE LD+S+  + +L    ++    S  +  +         
Sbjct: 167 VRNNQLTFL-----PELPESLEALDVSTNLLESLPAVPVRNHH-SEETEIFFRCRE---- 216

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
            N    + + + SL     + + DN L   +   L+  T+    +      + S      
Sbjct: 217 -NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

Query: 182 VHLTSIE 188
           +H    +
Sbjct: 276 LHRPLAD 282

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (261), Expect = 2e-24
 Identities = 47/265 (17%), Positives = 98/265 (36%), Gaps = 34/265 (12%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS-SFGNMNFLRILDLSNNQLTG 374
           LD+SNN    +I         +L    ++ N ++ +I   SF ++  L  LDLS N L+ 
Sbjct: 57  LDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS- 113

Query: 375 EIPEHLAVGCVNLESLVLSNNSLK----GHMFSRNFNLANLMSLQLEGNHFIGEIS-QSL 429
            +         +L  L L  N  K      +FS   +L  L  L++       +I  +  
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQRKDF 170

Query: 430 SKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489
           +  + LE L ++ ++L    P+ L  +  + ++I+        + +       ++ L++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 490 DNNISG---------------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDL 528
           D ++                        + ++   L   +   +  ++ +  L  S N L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

Query: 529 TGSIPSTFSNLKHVESLDLSNNKLN 553
                  F  L  ++ + L  N  +
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 29/228 (12%)

Query: 335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394
                +   S  +L+ SIPS  G    ++ LDLSNN++T  I       CVNL++LVL++
Sbjct: 30  CDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTS 85

Query: 395 N---SLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSL-SKCSSLEGLFLNNNNLSGKIP 450
           N   +++   FS   +L +L  L L  N+ +  +S S     SSL  L L  N       
Sbjct: 86  NGINTIEEDSFS---SLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141

Query: 451 R-WLGDLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLDLSCNKLIGPI 508
                 LT+LQ + + N      I  + F  L  L+ L+I  +++               
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS------------Y 189

Query: 509 PPKI-GNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSNNKLNG 554
            PK   ++  +  L L        +          VE L+L +  L+ 
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 19/202 (9%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIAS-IF---PSLKN 60
            SL  L LL N +  +  T+      T L+ L +     ++     I    F     L+ 
Sbjct: 124 SSLTFLNLLGNPYKTLGETSL-FSHLTKLQILRV----GNMDTFTKIQRKDFAGLTFLEE 178

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSN--- 117
           L +   ++            +++ HL +   +       L+I  +   S++ L L +   
Sbjct: 179 LEIDASDLQSYEPK-SLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDL 234

Query: 118 -STRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSI 176
            +   +  S      L      + + + D  L   +   L  ++ L  L  S NQL  S+
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SV 292

Query: 177 SSSPLVHLTSIEKLYLSNNHFR 198
                  LTS++K++L  N + 
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 8e-13
 Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 29/256 (11%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDF---SSLHISLLQSIASIFPSL 58
           G   ++ +L L  N  T I+ +   L    NL+ L L     +++      S+     SL
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSD--LQRCVNLQALVLTSNGINTIEEDSFSSL----GSL 102

Query: 59  KNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQI-IGESMPSLKYLSLSN 117
           ++L +S   ++ L     F    SL  L++         +  +  +   +  L+ L + N
Sbjct: 103 EHLDLSYNYLSNLSSS-WFKPLSSLTFLNLLGNPY---KTLGETSLFSHLTKLQILRVGN 158

Query: 118 STRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSIS 177
                  ++I  +    L  L+EL +  +DL+   P  L ++ ++  L +   Q    + 
Sbjct: 159 MDT---FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214

Query: 178 SSPLVHLTSIEKLYLSNNHFRI-------PISLEPLFNHSRLKIFYADNNELNAEITQSH 230
              +   +S+E L L +                  L      +     +  L   +   +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 231 SLTAPNFQLSRLSLSS 246
            ++     L  L  S 
Sbjct: 275 QIS----GLLELEFSR 286

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  102 bits (256), Expect = 3e-24
 Identities = 53/249 (21%), Positives = 92/249 (36%), Gaps = 29/249 (11%)

Query: 309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLS 368
            ++            +  +P     I  +     +  N +     +SF     L IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 369 NNQLTGEIPEHLAVGCVNLESLVLSNN----SLKGHMFSRNFNLANLMSLQLEGNHFIGE 424
           +N L   I      G   LE L LS+N    S+    F     L  L +L L+    + E
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCG-LQE 119

Query: 425 ISQ-SLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL 482
           +        ++L+ L+L +N L   +P     DL  L ++ +  N +       F  L  
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 483 LQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNLKH 541
           L  L +  N ++             + P    +L R+ TL L  N+L+       + L+ 
Sbjct: 179 LDRLLLHQNRVAH------------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 542 VESLDLSNN 550
           ++ L L++N
Sbjct: 227 LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFN 407
           ++P         + + L  N+++  +P      C NL  L L +N    +    F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 408 LANLMSLQLEGNHFIGEISQS-LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
           LA L  L L  N  +  +  +       L  L L+   L    P     L  LQY+ + +
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 467 NHLEGPIPVE-FCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLS 524
           N L+  +P + F  L  L  L +  N IS             +P +    L  +  L L 
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRISS------------VPERAFRGLHSLDRLLLH 185

Query: 525 HNDLTGSIPSTFSNLKHVESLDLSNNKL 552
            N +    P  F +L  + +L L  N L
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 20/221 (9%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIA-SIFPSLKNLS 62
             +   ++L  N  + +   +    +  NL  L L  +   ++ + + A +    L+ L 
Sbjct: 31  PAASQRIFLHGNRISHVPAAS--FRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLD 86

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIGESMPSLKYLSLSNSTR 120
           +S       V    F     L  L +    +       F       + +L+YL L +   
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-----RGLAALQYLYLQD--- 138

Query: 121 GTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
             N+   + D     L +L  L++  N +          + SL  L +  N++   +   
Sbjct: 139 --NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
               L  +  LYL  N+    +  E L     L+    ++N
Sbjct: 196 AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIF---PSLK 59
           +  +L  L+L  N    I   A        LE L L   +  +  +    + F     L 
Sbjct: 54  ACRNLTILWLHSNVLARIDAAA--FTGLALLEQLDLS-DNAQLRSVD--PATFHGLGRLH 108

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRI-ALNTSFLQIIGESMPSLKYLSLSNS 118
            L +  C +  L  G  F    +L++L +    + AL     +     + +L +L L   
Sbjct: 109 TLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHG- 162

Query: 119 TRGTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSIS 177
               N  S + ++    L  L  L +  N +    P    ++  L  LY+  N L+ ++ 
Sbjct: 163 ----NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 178 SSPLVHLTSIEKLYLSNNHFR 198
           +  L  L +++ L L++N + 
Sbjct: 218 TEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 42/264 (15%), Positives = 84/264 (31%), Gaps = 64/264 (24%)

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
            + + +++  N+++  + ++      ++  L+L +N     I        + L+     +
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSD 89

Query: 220 NELNAEITQSHSLTAPNFQ-LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEF 278
           N       Q  S+    F  L RL               L+    L+   L  +      
Sbjct: 90  NA------QLRSVDPATFHGLGRL-------------HTLH----LDRCGLQEL------ 120

Query: 279 PTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSL 338
              L      L+ L L +++L                  + ++ FR          L +L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQ----------------ALPDDTFRD---------LGNL 155

Query: 339 HVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK 398
               +  N +      +F  ++ L  L L  N++   +  H       L +L L  N+L 
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

Query: 399 ---GHMFSRNFNLANLMSLQLEGN 419
                  +    L  L  L+L  N
Sbjct: 215 ALPTEALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 46/250 (18%), Positives = 76/250 (30%), Gaps = 51/250 (20%)

Query: 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV 167
            + + + L         S +      +  +L  L++  N L          +  L  L +
Sbjct: 32  AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 168 SYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEP-LFNH-SRLKIFYADNNELNAE 225
           S N    S+  +    L  +  L+L     +    L P LF   + L+  Y  +N L   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNAL--- 141

Query: 226 ITQSHSLTAPNFQ-LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLE 284
                +L    F+ L  L               L     L    +S +      P     
Sbjct: 142 ----QALPDDTFRDLGNL-------------THL----FLHGNRISSV------PERAFR 174

Query: 285 NNTKLRQLSLVNDSL----AGPFR-LPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
               L +L L  + +       FR L      RL  L +  NN    +P E    L +L 
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLS-ALPTEALAPLRALQ 228

Query: 340 VFNISMNALD 349
              ++ N   
Sbjct: 229 YLRLNDNPWV 238

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 5e-24
 Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 25/236 (10%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEG 418
             +LDL NN ++ E+ +    G  +L +LVL NN    +    FS    L  L  L +  
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFS---PLRKLQKLYISK 111

Query: 419 NHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHL-EGPIPVEF 477
           NH + EI  +L    SL  L +++N +          L  +  I M  N L         
Sbjct: 112 NH-LVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 478 CQLDLLQILDISDNNISG----------RLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHN 526
                L  L IS+  ++G           L L  NK I  I  +     +++  L L HN
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN 227

Query: 527 DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
            +      + S L  +  L L NNKL+ ++P  L +LK L+V  +  NN++ ++  
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 2e-23
 Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 17/244 (6%)

Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
           ++L  L IS N+    IP    ++  SL    I  N +       F  +  +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 371 QLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQ-SL 429
            L     E  A   + L  L +S   L   +         L  L L+ N  I  I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNK-IQAIELEDL 213

Query: 430 SKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489
            + S L  L L +N +       L  L  L+ + + NN L   +P     L LLQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 490 DNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSI--PSTFSNLKHVESLDL 547
            NNI+    +  N                  ++L +N +      P+TF  +    ++  
Sbjct: 273 TNNIT---KVGVNDFCPVGFG--VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 548 SNNK 551
            N K
Sbjct: 328 GNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 49/250 (19%), Positives = 97/250 (38%), Gaps = 29/250 (11%)

Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
           + L  L + NN     I  +    L  L    IS N L    P+   +   L  L + +N
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDN 133

Query: 371 QLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRN-FNLANLMSLQLEGNHFIGEISQSL 429
           ++  ++P+ +  G  N+  + +  N L+   F    F+   L  L++     +  I + L
Sbjct: 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL 191

Query: 430 SKCSSLEGLFLNNNNLSGKIPRW-LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 488
               +L  L L++N +   I    L   ++L  + + +N +          L  L+ L +
Sbjct: 192 P--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 489 SDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK------HV 542
            +N +S             +P  + +L  +Q + L  N++T    + F  +       + 
Sbjct: 249 DNNKLSR------------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 543 ESLDLSNNKL 552
             + L NN +
Sbjct: 297 NGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 46/246 (18%), Positives = 90/246 (36%), Gaps = 24/246 (9%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMS 64
             L  L L+ N  + I   A        L+ L +  S  H+  +    ++  SL  L + 
Sbjct: 78  QHLYALVLVNNKISKIHEKA--FSPLRKLQKLYI--SKNHLVEIP--PNLPSSLVELRIH 131

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNS 124
              +  + +G  F   +++  ++M    +    S  +        L YL +S        
Sbjct: 132 DNRIRKVPKGV-FSGLRNMNCIEMGGNPL--ENSGFEPGAFDGLKLNYLRISE-----AK 183

Query: 125 SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHL 184
              + + L     L EL++  N ++      L   + L  L + +NQ+   I +  L  L
Sbjct: 184 LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFL 240

Query: 185 TSIEKLYLSNNHF-RIPISLEPLFNHSRLKIFYADNN---ELNAEITQSHSLTAPNFQLS 240
            ++ +L+L NN   R+P     L +   L++ Y   N   ++                 +
Sbjct: 241 PTLRELHLDNNKLSRVP---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 241 RLSLSS 246
            +SL +
Sbjct: 298 GISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 25/202 (12%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               SL  L +  N    +           N+  + +  + L  S  +  A     L  L
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRI-ALNTSFLQIIGESMPSLKYLSLSNSTR 120
            +S  ++ G+ +       ++L  L +   +I A+    L         L  L L +   
Sbjct: 178 RISEAKLTGIPKD----LPETLNELHLDHNKIQAIELEDLL----RYSKLYRLGLGH--- 226

Query: 121 GTNSSRILDQGLCS-LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
             N  R+++ G  S L  L+EL++ +N L   +P  L ++  L+++Y+  N +T  +  +
Sbjct: 227 --NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVN 282

Query: 180 ------PLVHLTSIEKLYLSNN 195
                   V       + L NN
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNN 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 17/146 (11%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDF---SSLHISLLQSIASIFPSL 58
               +LN L+L  N    I      L  ++ L  L L       +    L  +    P+L
Sbjct: 190 DLPETLNELHLDHNKIQAIELED--LLRYSKLYRLGLGHNQIRMIENGSLSFL----PTL 243

Query: 59  KNLSMSGCEVNGLVR-GQGFPHFKSLEHLDMSS---TRIALNTSFLQIIGESMPSLKYLS 114
           + L +     N L R   G P  K L+ + + +   T++ +N       G        +S
Sbjct: 244 RELHLDN---NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 115 LS-NSTRGTNSSRILDQGLCSLMHLQ 139
           L  N            + +   + +Q
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQ 326

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 2e-23
 Identities = 74/437 (16%), Positives = 138/437 (31%), Gaps = 85/437 (19%)

Query: 137 HLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNH 196
           H+  + ++ N +        + +  L+ L V        I ++    L+S+  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 197 FRIPISLEP-LFNH-SRLKIFYADNNELNAEITQSHSLTAPNF----QLSRLSLSSSYGD 250
           F     LE   FN  + L++       L         L+   F     L  L L  +   
Sbjct: 91  FL---QLETGAFNGLANLEVLTLTQCNL-----DGAVLSGNFFKPLTSLEMLVLRDN--- 139

Query: 251 GFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSH 310
                            ++  I+    F      N  +   L L  + +     +     
Sbjct: 140 -----------------NIKKIQPASFF-----LNMRRFHVLDLTFNKVK---SICEEDL 174

Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
                   +               L S+ + +++   L      +      +  LDLS N
Sbjct: 175 LNFQGKHFTLLR------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 371 QLTGEIPEHL--AVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQS 428
                + +    A+    ++SL+LSN+   G  F    N  +  +   +G          
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-NFKDPDNFTFKGL--------- 272

Query: 429 LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 488
             + S ++   L+ + +   +       T L+ + +  N +       F  L  L  L++
Sbjct: 273 --EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 489 SDNNISG-------------RLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS 534
           S N +                LDLS N  I  +  +    L  ++ L L  N L  S+P 
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLK-SVPD 388

Query: 535 -TFSNLKHVESLDLSNN 550
             F  L  ++ + L  N
Sbjct: 389 GIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.3 bits (232), Expect = 3e-20
 Identities = 69/413 (16%), Positives = 138/413 (33%), Gaps = 64/413 (15%)

Query: 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRILY 166
             + Y+ LS      + + + +     L  LQ L +        +       ++SL IL 
Sbjct: 30  AHVNYVDLSL----NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNH-SRLKIFYADNNELNAE 225
           + YNQ    + +     L ++E L L+  +    +     F   + L++    +N +  +
Sbjct: 86  LDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI--K 142

Query: 226 ITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLEN 285
             Q  S      +   L L+ +                     +  I         L   
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFN--------------------KVKSICEE----DLLNFQ 178

Query: 286 NTKLRQLSLVNDSLAGPFRLPIHSHKR--------LGMLDISNNNFRGHIPLEIGDILPS 337
                 L L + +L       +   K         +  LD+S N F+  +     D +  
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238

Query: 338 LHVFNISMNALDGSIPSSFGN--------------MNFLRILDLSNNQLTGEIPEHLAVG 383
             + ++ ++       S                   + ++  DLS +++   + + +   
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSH 297

Query: 384 CVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEGNHFIGEI-SQSLSKCSSLEGLF 439
             +LE L L+ N    +  + F     L +L+ L L  N  +G I S+       LE L 
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFW---GLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLD 353

Query: 440 LNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492
           L+ N++     +    L  L+ + +  N L+      F +L  LQ + +  N 
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 7e-20
 Identities = 85/475 (17%), Positives = 151/475 (31%), Gaps = 111/475 (23%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMS 64
             +N + L  N+  ++  T+       +L++L ++  +  + +     + F  L +    
Sbjct: 30  AHVNYVDLSLNSIAELNETS--FSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSS---- 80

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNS 124
                                                        L  L L       N 
Sbjct: 81  ---------------------------------------------LIILKLDY-----NQ 90

Query: 125 SRILDQG-LCSLMHLQELYMADNDLRGSL--PWCLANMTSLRILYVSYNQLTGSISSSPL 181
              L+ G    L +L+ L +   +L G++        +TSL +L +  N +     +S  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 182 VHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS 240
           +++     L L+ N  + I       F      +    +  L                ++
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ--------------DMN 196

Query: 241 RLSLSSSYGDGFIFPKFLYHQHDLEYADLSH--IKMNGEFPTWLLENNTKLRQLSLVNDS 298
              L                   +   DLS    K +     +     TK++ L L N  
Sbjct: 197 EYWLGWEKCGNPF------KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN-- 248

Query: 299 LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS-SFG 357
                     S       D  N  F+G            +   ++S + +  ++    F 
Sbjct: 249 ----SYNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSKI-FALLKSVFS 296

Query: 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSL 414
           +   L  L L+ N++  +I ++   G  +L  L LS N   S+   MF    NL  L  L
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---NLDKLEVL 352

Query: 415 QLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNN 467
            L  NH I  +  QS     +L+ L L+ N L   +P  + D LT LQ I +  N
Sbjct: 353 DLSYNH-IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 41/243 (16%), Positives = 89/243 (36%), Gaps = 34/243 (13%)

Query: 330 EIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES 389
           ++ ++   ++  ++S+N++     +SF  +  L+ L +        I  +   G  +L  
Sbjct: 24  QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83

Query: 390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNL-SGK 448
           L L  N                   QLE   F        +  ++LE L L   NL    
Sbjct: 84  LKLDYNQFL----------------QLETGAF--------NGLANLEVLTLTQCNLDGAV 119

Query: 449 IPR-WLGDLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLDLSCNKLIG 506
           +   +   LT L+ +++ +N+++   P   F  +    +LD++ N    ++   C + + 
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN----KVKSICEEDLL 175

Query: 507 PIPPK---IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563
               K   +  L+ I   +++   L             + +LDLS N     +  +  + 
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

Query: 564 KTL 566
              
Sbjct: 236 IAG 238

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 72/406 (17%), Positives = 127/406 (31%), Gaps = 90/406 (22%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMS 64
            SL  L L +N F  + T A   +   NLE L+L   +L  ++L                
Sbjct: 79  SSLIILKLDYNQFLQLETGA--FNGLANLEVLTLTQCNLDGAVLSGNF------------ 124

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMSS---TRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                       F    SLE L +      +I   + F      +M     L L+ +   
Sbjct: 125 ------------FKPLTSLEMLVLRDNNIKKIQPASFF-----LNMRRFHVLDLTFNKVK 167

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPW---------CLANMTSLRILYVSYNQL 172
           +     L        H   L ++   L+  +                TS+  L +S N  
Sbjct: 168 SICEEDLLN--FQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 173 TGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSL 232
             S++      +   +   L  ++     S     N         +      E +   + 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD----NFTFKGLEASGVKTC 280

Query: 233 TAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQL 292
                 LS+  + +      +      H  DLE   L+  ++N +         T L +L
Sbjct: 281 -----DLSKSKIFA------LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 293 SLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSI 352
           +L                         + NF G I   + + L  L V ++S N +  ++
Sbjct: 329 NL-------------------------SQNFLGSIDSRMFENLDKLEVLDLSYNHI-RAL 362

Query: 353 PS-SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
              SF  +  L+ L L  NQL   +P+ +     +L+ + L  N  
Sbjct: 363 GDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 27/208 (12%)

Query: 6   SLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSG 65
           S+ TL L  N F +     +   +    +  SL  S+ +        + F    N +  G
Sbjct: 213 SITTLDLSGNGFKES-MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 66  CEVNGL------------VRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIGESMPSLK 111
            E +G+            +    F HF  LE L ++   I    + +F       +  L 
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-----WGLTHLL 326

Query: 112 YLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCL-ANMTSLRILYVSYN 170
            L+LS +  G+  SR+ +    +L  L+ L ++ N +R +L       + +L+ L +  N
Sbjct: 327 KLNLSQNFLGSIDSRMFE----NLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381

Query: 171 QLTGSISSSPLVHLTSIEKLYLSNNHFR 198
           QL  S+       LTS++K++L  N + 
Sbjct: 382 QLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 47/291 (16%), Positives = 94/291 (32%), Gaps = 58/291 (19%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLD------------FSSL----HIS 46
              +L  L L   N      +       T+LE L L             F ++     + 
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 47  L---------------LQSIASIFPSLKNLSMSGCEVNGL--VRGQGFPHFKSLEHLDMS 89
           L                Q        L ++++       L   +        S+  LD+S
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 90  STRIALNTSFLQIIGESMPSLKYLSLSN-----STRGTNSSRILDQGLC---SLMHLQEL 141
                 + +       +   ++ L LSN     S+ G  + +  D           ++  
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC 280

Query: 142 YMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
            ++ + +   L    ++ T L  L ++ N++   I  +    LT + KL LS N      
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG--- 336

Query: 202 SLEP-LFNH-SRLKIFYADNNELNAEITQSHSLTAPNF----QLSRLSLSS 246
           S++  +F +  +L++     N +        +L   +F     L  L+L +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHI-------RALGDQSFLGLPNLKELALDT 380

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.7 bits (230), Expect = 1e-20
 Identities = 57/268 (21%), Positives = 94/268 (35%), Gaps = 32/268 (11%)

Query: 328 PLEIGDILPSLHVFNISMNALDGSIPSSFG-----NMNFLRILDLSNNQLTGEIPEHLAV 382
             +  DI+ SL +  +++ A        FG      ++ L+ L L N ++TG  P  L  
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 383 GCV-NLESLVLSNNSLKGHMFS----RNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG 437
               +L  L L N S           + +    L  L +   H +    + +    +L  
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 438 LFLNNNNLSGKIPRW----LGDLTRLQYIIMPNNHLE---GPIPVEFCQLDLLQILDISD 490
           L L++N   G+              LQ + + N  +E   G           LQ LD+S 
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550
           N++                P     +++ +LNLS   L        + L     LDLS N
Sbjct: 238 NSLRD----------AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYN 284

Query: 551 KLNGKIPHQLVELKTLEVFSVAYNNLSG 578
           +L+   P    EL  +   S+  N    
Sbjct: 285 RLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 57/304 (18%), Positives = 85/304 (27%), Gaps = 17/304 (5%)

Query: 155 CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKI 214
           C  N +  +  + S     G+          S+E L    +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 215 FYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQH-DLEYADLSHIK 273
                  + + I            L  L+L +    G   P  L     DL   +L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 274 MNGEFPTWLLE----NNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPL 329
                  WL E        L+ LS+            +     L  LD+S+N   G   L
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 330 E---IGDILPSLHVFNISMN---ALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVG 383
                    P+L V  +         G   +       L+ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN 443
              L SL LS   L      +    A L  L L  N  +        +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGL--KQVPKGL-PAKLSVLDLSYNR-LDRNPSPD-ELPQVGNLSLKGN 306

Query: 444 NLSG 447
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 7e-16
 Identities = 43/251 (17%), Positives = 80/251 (31%), Gaps = 22/251 (8%)

Query: 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH 400
           ++ + N L  +    +G    L  L    +           +  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 401 MFS---RNFNLANLMSLQLEGNHFIGEISQSLSKCS--SLEGLFLNNNNLSGKIPRWLGD 455
           +     R   ++ L  L LE     G     L + +   L  L L N + +     WL +
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 456 L-----TRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPP 510
           L       L+ + +   H       +      L  LD+SDN   G   L           
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-------ISAL 195

Query: 511 KIGNLTRIQTLNLSHNDLT---GSIPSTFSNLKHVESLDLSNNKLNGKIPHQL-VELKTL 566
                  +Q L L +  +    G   +  +    ++ LDLS+N L              L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 567 EVFSVAYNNLS 577
              ++++  L 
Sbjct: 256 NSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 43/250 (17%), Positives = 77/250 (30%), Gaps = 22/250 (8%)

Query: 6   SLNTLYLLFNNFTD-IATTAQELHSFTNLEYLSLDFSSLHISLLQSIASI-FPSLKNLSM 63
           SL  L +        I   A  +   + L+ L+L+   +  +    +     P L  L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 64  SGCEVNGLVRGQG---FPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
                                 L+ L ++        +F        P+L  L LS++  
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS---LNFSCEQVRVFPALSTLDLSDNPE 185

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLR---GSLPWCLANMTSLRILYVSYNQLTGSIS 177
                 I          LQ L + +  +    G      A    L+ L +S+N L  +  
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 178 SSPLVHLTSIEKLYLSNNHFR-IPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
           +      + +  L LS    + +P  L       +L +     N L+        L    
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPA-----KLSVLDLSYNRLD-RNPSPDELP--- 296

Query: 237 FQLSRLSLSS 246
            Q+  LSL  
Sbjct: 297 -QVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 14/225 (6%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSL---DFSSLHISLLQSIASIFPSLK 59
               L  L L     T  A       +  +L  L+L    +++    L +    + P LK
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 60  NLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFL-QIIGESMPSLKYLSLSNS 118
            LS++          Q    F +L  LD+S          +  +     P+L+ L+L N 
Sbjct: 153 VLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN- 210

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLP-WCLANMTSLRILYVSYNQLTGSIS 177
                 S +      + + LQ L ++ N LR +         + L  L +S+  L     
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 178 SSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
             P      +  L LS N               ++       N  
Sbjct: 271 GLP----AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 26/191 (13%), Positives = 59/191 (30%), Gaps = 15/191 (7%)

Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRW---LGDLTRLQYII 463
             +    L+             + K  SL+ L +    +  +I      +  ++ LQ + 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 464 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNL 523
           + N  + G  P    +     +  ++  N+S     +    +            ++ L++
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW-----LKPGLKVLSI 156

Query: 524 SHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI-------PHQLVELKTLEVFSVAYNNL 576
           +                 + +LDLS+N   G+        P +   L+ L + +      
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 577 SGEIPEWEAQF 587
           SG      A  
Sbjct: 217 SGVCSALAAAR 227

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 18/178 (10%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSL---DFSSLHISLLQSIASIFPSLK 59
             P L  L +   +  +   + +++  F  L  L L           +       FP+L+
Sbjct: 147 LKPGLKVLSIAQAHSLNF--SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 60  NLSMSGCEVNGL--VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSN 117
            L++    +     V          L+ LD+S     L  +      +    L  L+LS 
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPSCDWPSQLNSLNLSF 262

Query: 118 STRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGS 175
                   + + +GL +   L  L ++ N L    P     +  +  L +  N    S
Sbjct: 263 -----TGLKQVPKGLPA--KLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQEL-HSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
             FP+L  L L        +     L  +   L+ L L  +SL  +           L +
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSN 117
           L++S   +  + +G        L  LD+S  R+  N S  +     +P +  LSL  
Sbjct: 258 LNLSFTGLKQVPKGL----PAKLSVLDLSYNRLDRNPSPDE-----LPQVGNLSLKG 305

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.1 bits (228), Expect = 2e-19
 Identities = 54/285 (18%), Positives = 99/285 (34%), Gaps = 33/285 (11%)

Query: 330 EIGDI-----LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGC 384
            I  I            N+   ++  ++      +N +  +  +N+ +   + + +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YL 64

Query: 385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNN 444
            N+  L L+ N L         NL NL  L L+ N  I ++S SL     L+ L L +N 
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNG 120

Query: 445 LSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--------- 495
           +S  I   L  L +L+ + + NN +         +L  L  L + DN IS          
Sbjct: 121 IS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTK 176

Query: 496 --RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
              L LS N  I  +   +  L  +  L L   +      +  SNL    ++  ++  L 
Sbjct: 177 LQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 554 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGN 598
              P  + +    E  +V ++            +        +  
Sbjct: 235 --TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.9 bits (225), Expect = 3e-19
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 31/221 (14%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
           +F       L   + TD  T     +   +++ +    ++  I  +Q I    P++  L 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT----QNELNSIDQI--IANNSDIKSVQGIQY-LPNVTKLF 71

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
           ++G   N L   +   + K+L  L +   +I  + S L    + +  LK LSL +     
Sbjct: 72  LNG---NKLTDIKPLTNLKNLGWLFLDENKIK-DLSSL----KDLKKLKSLSLEH----- 118

Query: 123 NSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
           N   I D  GL  L  L+ LY+ +N +       L+ +T L  L +  NQ++      PL
Sbjct: 119 N--GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 171

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
             LT ++ LYLS NH      L  L     L +    + E 
Sbjct: 172 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 1e-15
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 26/221 (11%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +   P++  L+L  N  TDI    + L +  NL +L LD +   I  L S+      LK+
Sbjct: 61  IQYLPNVTKLFLNGNKLTDI----KPLTNLKNLGWLFLDEN--KIKDLSSLKD-LKKLKS 113

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           LS+    ++ +    G  H   LE L + + +I  + + L      +  L  LSL +   
Sbjct: 114 LSLEHNGISDI---NGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLED--- 162

Query: 121 GTNSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
               ++I D   L  L  LQ LY++ N +   L   LA + +L +L +   +   +   +
Sbjct: 163 ----NQISDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECL-NKPIN 215

Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
              +L     +  ++     P  +    ++ +  + +    
Sbjct: 216 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 1e-15
 Identities = 58/463 (12%), Positives = 128/463 (27%), Gaps = 99/463 (21%)

Query: 138 LQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
           + E       ++   P             +    +T    +     L SI+++  +N+  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 198 RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF 257
           +   S++ +     +   + + N                 +L+ +               
Sbjct: 56  K---SVQGIQYLPNVTKLFLNGN-----------------KLTDIK-------------P 82

Query: 258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLD 317
           L +  +L +  L                  K++ LS             +   K+L  L 
Sbjct: 83  LTNLKNLGWLFLD---------------ENKIKDLS------------SLKDLKKLKSLS 115

Query: 318 ISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIP 377
           + +N         I DI                   +   ++  L  L L NN++T    
Sbjct: 116 LEHNG--------ISDI-------------------NGLVHLPQLESLYLGNNKIT--DI 146

Query: 378 EHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG 437
             L+     L++L L +N +          L  L +L L  NH I ++  +L+   +L+ 
Sbjct: 147 TVLS-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDV 201

Query: 438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 497
           L L +     K      +L     +   +  L  P  +          +       +  +
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

Query: 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 557
                + +     K     R+         ++  +  T    K      ++  K   K  
Sbjct: 262 SFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQG 321

Query: 558 HQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTF 600
           +      T +     +N  +  +   +       +      T 
Sbjct: 322 YVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTV 364

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 2e-13
 Identities = 50/275 (18%), Positives = 109/275 (39%), Gaps = 34/275 (12%)

Query: 51  IASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMP 108
           I  IFP  +         +   +          S++ +  +++ I  +   +Q     +P
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQ----YLP 65

Query: 109 SLKYLSLSNSTRGTNSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV 167
           ++  L L+        +++ D + L +L +L  L++ +N ++  L   L ++  L+ L +
Sbjct: 66  NVTKLFLNG-------NKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116

Query: 168 SYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEIT 227
            +N ++     + LVHL  +E LYL NN  +I   +  L   ++L     ++N+++ +I 
Sbjct: 117 EHNGIS---DINGLVHLPQLESLYLGNN--KI-TDITVLSRLTKLDTLSLEDNQIS-DIV 169

Query: 228 QSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNT 287
               LT    +L  L LS ++       + L    +L+  +L   +   +       N  
Sbjct: 170 PLAGLT----KLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPINH-QSNLV 221

Query: 288 KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNN 322
               +   + SL  P    I         ++  + 
Sbjct: 222 VPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHL 254

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 42/225 (18%)

Query: 352 IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNL 408
           +P S       + LDLS N L   +  +       L+ L LS     +++   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 409 ANLMSLQLEGNHFIGEISQSL-----SKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII 463
           ++L +L L GN       QSL     S  SSL+ L     NL+      +G L  L+ + 
Sbjct: 76  SHLSTLILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 464 MPNNHL-EGPIPVEFCQLDLLQILDISDNNIS-----------------GRLDLSCNKLI 505
           + +N +    +P  F  L  L+ LD+S N I                    LDLS N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 506 GPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550
             I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 191 F-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 25/171 (14%)

Query: 433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDN 491
            S + L L+ N L             LQ + +    ++  I    +  L  L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 492 NIS-------------GRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS--T 535
            I               +L      L   +     G+L  ++ LN++HN +  S      
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ-SFKLPEY 144

Query: 536 FSNLKHVESLDLSNNKLNGKIPHQ----LVELKTLEVFSVAYNNLSGEIPE 582
           FSNL ++E LDLS+NK+   I       L ++  L +      N    I  
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 47/223 (21%), Positives = 83/223 (37%), Gaps = 46/223 (20%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLD-----------FSSLHISL----- 47
             S   L L FN    + + +    SF  L+ L L            + SL   L     
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLIL 83

Query: 48  ----LQSIAS-IF---PSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSF 99
               +QS+A   F    SL+ L      +  L       H K+L+ L+++   I      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLI----QS 138

Query: 100 LQIIG--ESMPSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQ----ELYMADNDLRGSL 152
            ++     ++ +L++L LS+     N  + +    L  L  +      L ++ N +   +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSS-----NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 153 PWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNN 195
                    L+ L +  NQL  S+       LTS++K++L  N
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 54/274 (19%), Positives = 103/274 (37%), Gaps = 71/274 (25%)

Query: 82  SLEHLDMSSTRIAL--NTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCS-LMHL 138
           S ++LD+S   +    + SF      S P L+ L LS         + ++ G    L HL
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-----FSFPELQVLDLSR-----CEIQTIEDGAYQSLSHL 78

Query: 139 QELYMADNDLRGSLPW-CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
             L +  N ++ SL     + ++SL+ L      L  S+ + P+ HL ++++L +++N  
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

Query: 198 RIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQ-LSRLSLSSSYGDGFIFP 255
           +    L   F++ + L+     +N++        S+   + + L ++             
Sbjct: 137 QS-FKLPEYFSNLTNLEHLDLSSNKI-------QSIYCTDLRVLHQM------------- 175

Query: 256 KFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGM 315
             L    DL    ++ I+  G F         +L++L+L                     
Sbjct: 176 PLLNLSLDLSLNPMNFIQ-PGAF------KEIRLKELAL--------------------- 207

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALD 349
                N  +  +P  I D L SL    +  N  D
Sbjct: 208 ---DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 48  LQSI-ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRI-ALNTSFLQIIGE 105
              I  ++  S KNL +S   +  L     F  F  L+ LD+S   I  +     Q    
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQ---- 73

Query: 106 SMPSLKYLSLSNSTRGTNSSRILDQGLCS-LMHLQELYMADNDLRGSLPWCLANMTSLRI 164
           S+  L  L L+      N  + L  G  S L  LQ+L   + +L     + + ++ +L+ 
Sbjct: 74  SLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNN 195
           L V++N +          +LT++E L LS+N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.2 bits (214), Expect = 5e-18
 Identities = 72/412 (17%), Positives = 137/412 (33%), Gaps = 49/412 (11%)

Query: 81  KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQE 140
             ++ LD+    +  + +    +   +   + + L +        + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 141 LYMADNDLRGSLPWCLANM-----TSLRILYVSYNQLT----GSISSSPLVHLTSIEKLY 191
           L +  N+L      C+          ++ L +    LT    G +SS+ L  L ++++L+
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 192 LSNNHFRIP----ISLEPLFNHSRLKIFYADNNELNAEITQSHSLT-APNFQLSRLSLS- 245
           LS+N         +    L    RL+    +   L+A   +  +           L++S 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 246 ---SSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSL 299
              +  G   +          LE   L    +  +    L   + +   LR+L+L ++ L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 300 --AGPFRL---PIHSHKRLGMLDISNNNFRGHIPLEIGDIL---PSLHVFNISMNALDGS 351
              G   L    +H   RL  L I           ++  +L    SL   +++ N L   
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 352 ----IPSSFGNMNF-LRILDLSNNQLTGEIPEHLAVG---CVNLESLVLSNNSLKG---H 400
               +  +       L  L + +   T     H +        L  L +SNN L+     
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 401 MFSR--NFNLANLMSLQLEGNHF----IGEISQSLSKCSSLEGLFLNNNNLS 446
              +      + L  L L            ++ +L    SL  L L+NN L 
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 71/444 (15%), Positives = 134/444 (30%), Gaps = 61/444 (13%)

Query: 4   FPSLNTLYLLFNNFTDIATT--AQELHSFTNLEYLSLDFSSLHISLLQSIASIF----PS 57
                 + L     T+      +  L     L  L+L  + L    +  +          
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 58  LKNLSMSGC---EVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM----PSL 110
           ++ LS+  C        V         +L+ L +S   +    + LQ++ E +      L
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL--GDAGLQLLCEGLLDPQCRL 144

Query: 111 KYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLA-----NMTSLRIL 165
           + L L   +    S   L   L +    +EL +++ND+  +    L      +   L  L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 166 YVSYNQLTG---SISSSPLVHLTSIEKLYLSNNHFR----IPISLEPLFNHSRLKIFYAD 218
            +    +T          +    S+ +L L +N         +    L   SRL+  +  
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 219 NNELNAE--------ITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLS 270
              + A+        +    SL      L+   L    G   +    L     LE   + 
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLK--ELSLAGNELGDE-GARLLCETLLEPGCQLESLWVK 321

Query: 271 HIKMNGEFPTWL---LENNTKLRQLSLVNDSLAGP-----FRLPIHSHKRLGMLDISNNN 322
                    +     L  N  L +L + N+ L         +        L +L +++ +
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 323 FRGHIPLEIGDIL---PSLHVFNISMNALDGS----IPSSFGNMNF-LRILDLSNNQLTG 374
                   +   L    SL   ++S N L  +    +  S       L  L L +   + 
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

Query: 375 EIPEHLAVGCVNLESLVLSNNSLK 398
           E           L++L     SL+
Sbjct: 442 E-------MEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 45/237 (18%), Positives = 79/237 (33%), Gaps = 46/237 (19%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421
           ++ LD+   +L+      L       + + L +  L                        
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--------------------TEAR 44

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDL-----TRLQYIIMPNNHL--EG--P 472
             +IS +L    +L  L L +N L       +         ++Q + + N  L   G   
Sbjct: 45  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 473 IPVEFCQLDLLQILDISDNNISGR-LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT-- 529
           +      L  LQ L +SDN +    L L C  L+ P         R++ L L +  L+  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP-------QCRLEKLQLEYCSLSAA 157

Query: 530 --GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LK----TLEVFSVAYNNLSGE 579
               + S        + L +SNN +N      L + LK     LE   +    ++ +
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 32/237 (13%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
                + TL       T I    + +    NL    L+     I+ L  + +    +  L
Sbjct: 38  ADLDGITTLSAFGTGVTTI----EGVQYLNNLIG--LELKDNQITDLAPLKN-LTKITEL 90

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            +SG  +  +         +S++ LD++ST+I   T         + +L+ L L      
Sbjct: 91  ELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTPL-----AGLSNLQVLYLDL---- 138

Query: 122 TNSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
              ++I +   L  L +LQ L + +  +    P  LAN++ L  L    N+++     SP
Sbjct: 139 ---NQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS---DISP 190

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL-NAEITQSHSLTAPN 236
           L  L ++ +++L NN       + PL N S L I    N  + N  +  +++L  PN
Sbjct: 191 LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 6e-16
 Identities = 47/270 (17%), Positives = 100/270 (37%), Gaps = 31/270 (11%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
                   +++    ++     +       +  L            +E    L +L    
Sbjct: 15  DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLE 69

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF 402
           +  N +  +  +   N+  +  L+LS N L       +A G  ++++L L++  +     
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLK--NVSAIA-GLQSIKTLDLTSTQITD--V 122

Query: 403 SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
           +    L+NL  L L+ N  I  IS  L+  ++L+ L + N  +S   P  L +L++L  +
Sbjct: 123 TPLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN 522
              +N +    P     L  L  + + +N IS   D+S           + N + +  + 
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQIS---DVSP----------LANTSNLFIVT 223

Query: 523 LSHNDLTGSIPSTFSNLKHVESLDLSNNKL 552
           L++  +T       +NL     +   +   
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 9e-16
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 33/222 (14%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSL-HISLLQSIASIFPSLKNL 61
           +  +   +    +N TD  T          +  LS   + +  I  +Q       +L  L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQY----LNNLIGL 68

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
            +   ++  L       +   +  L++S   +   ++        + S+K L L+++   
Sbjct: 69  ELKDNQITDL---APLKNLTKITELELSGNPLKNVSAI-----AGLQSIKTLDLTST--- 117

Query: 122 TNSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
               +I D   L  L +LQ LY+  N +    P  LA +T+L+ L +   Q++     +P
Sbjct: 118 ----QITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS---DLTP 168

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
           L +L+ +  L   +N       + PL +   L   +  NN++
Sbjct: 169 LANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 30/227 (13%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +    +L  L L  N  TD+      L + T +  L L  S   +  + +IA    S+K 
Sbjct: 59  VQYLNNLIGLELKDNQITDL----APLKNLTKITELEL--SGNPLKNVSAIAG-LQSIKT 111

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           L ++  ++  +          +L+ L +   +I  N S L      + +L+YLS+ N   
Sbjct: 112 LDLTSTQITDV---TPLAGLSNLQVLYLDLNQIT-NISPL----AGLTNLQYLSIGN--- 160

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
                  L   L +L  L  L   DN +    P  LA++ +L  +++  NQ++     SP
Sbjct: 161 --AQVSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS---DVSP 212

Query: 181 LVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEIT 227
           L + +++  + L+N      I+ +P+F ++ L +         A I 
Sbjct: 213 LANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 54/266 (20%), Positives = 101/266 (37%), Gaps = 18/266 (6%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
             +   +  LS     +       +     L  L++ +N      PL+    L  +    
Sbjct: 37  QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKN---LTKITELE 91

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF 402
           +S N L     S+   +  ++ LDL++ Q+T   P     G  NL+ L L  N +     
Sbjct: 92  LSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQIT--NI 144

Query: 403 SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
           S    L NL  L +     + +++  L+  S L  L  ++N +S   P  L  L  L  +
Sbjct: 145 SPLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEV 200

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN 522
            + NN +    P+       L I+ +++  I+ +     N L+ P   K  +   I    
Sbjct: 201 HLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPAT 258

Query: 523 LSHNDLTGSIPSTFSNLKHVESLDLS 548
           +S N    S   T++    + ++  +
Sbjct: 259 ISDNGTYASPNLTWNLTSFINNVSYT 284

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 56/383 (14%), Positives = 118/383 (30%), Gaps = 97/383 (25%)

Query: 155 CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKI 214
               + +   +    + +T    +     L  I  L           ++E +   + L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 215 FYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKM 274
               +N++  ++    +LT    +++ L LS                             
Sbjct: 68  LELKDNQIT-DLAPLKNLT----KITELELS----------------------------- 93

Query: 275 NGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDI 334
                         L+ +S             I   + +  LD+++       PL     
Sbjct: 94  -----------GNPLKNVS------------AIAGLQSIKTLDLTSTQITDVTPLA---G 127

Query: 335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394
           L +L V  + +N +  +  S    +  L+ L + N Q++   P  LA     L +L   +
Sbjct: 128 LSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LA-NLSKLTTLKADD 182

Query: 395 NSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG 454
           N +     S   +L NL+ + L+ N  I ++S  L+  S+L  + L N  ++ +   +  
Sbjct: 183 NKIS--DISPLASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 455 DLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN 514
           +L     +                         I+   IS     +   L   +   I N
Sbjct: 239 NLVVPNVVK------------------GPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

Query: 515 LTRIQTLNLSHNDLTGSIPSTFS 537
           +    +   + +    +    FS
Sbjct: 281 V----SYTFNQSVTFKNTTVPFS 299

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 48/275 (17%), Positives = 110/275 (40%), Gaps = 35/275 (12%)

Query: 50  SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
           +I  IFP  +L N        + +           +  L    T +    + ++ + + +
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV----TTIEGV-QYL 62

Query: 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV 167
            +L  L L +       + +    L +L  + EL ++ N L+      +A + S++ L +
Sbjct: 63  NNLIGLELKD----NQITDL--APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDL 114

Query: 168 SYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEIT 227
           +  Q+T     +PL  L++++ LYL  N      ++ PL   + L+     N +++ ++T
Sbjct: 115 TSTQIT---DVTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS-DLT 167

Query: 228 QSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNT 287
              +L+    +L+ L    +          L    +L    L + +++   P   L N +
Sbjct: 168 PLANLS----KLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVSP---LANTS 217

Query: 288 KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNN 322
            L  ++L N ++      P+  +  L + ++    
Sbjct: 218 NLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGP 249

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 32/236 (13%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
           +F       L   + TD  T     +   +++ +    ++  I  +Q I    P++  L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT----QNELNSIDQI--IANNSDIKSVQGIQY-LPNVTKLF 74

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
           ++G   N L   +   + K+L  L +   ++  + S L    + +  LK LSL ++    
Sbjct: 75  LNG---NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEHN---- 122

Query: 123 NSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
               I D  GL  L  L+ LY+ +N +       L+ +T L  L +  NQ++      PL
Sbjct: 123 ---GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 174

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL-NAEITQSHSLTAPN 236
             LT ++ LYLS NH      L  L     L +    + E  N  I    +L  PN
Sbjct: 175 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 51/254 (20%), Positives = 95/254 (37%), Gaps = 28/254 (11%)

Query: 335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394
                  N+   ++      +   +N +  +  +N+ +   + + +     N+  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 77

Query: 395 NSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG 454
           N L         NL NL  L L+ N  + ++S SL     L+ L L +N +S  I   L 
Sbjct: 78  NKLT--DIKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 455 DLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS-----------GRLDLSCNK 503
            L +L+ + + NN +     +   +L  L  L + DN IS             L LS N 
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189

Query: 504 LIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563
            I  +   +  L  +  L L   +      +  SNL    ++  ++  L    P  + + 
Sbjct: 190 -ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDD 245

Query: 564 KTLEVFSVAYNNLS 577
              E  +V ++   
Sbjct: 246 GDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 53/288 (18%), Positives = 111/288 (38%), Gaps = 25/288 (8%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
            +   +  + +L   S+     +  +    +  +  +N++ +    ++    LP++    
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQGIQY---LPNVTKLF 74

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF 402
           ++ N L   I     N+  L  L L  N++  ++   L      L+SL L +N +     
Sbjct: 75  LNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DL-SSLK-DLKKLKSLSLEHNGIS--DI 127

Query: 403 SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
           +   +L  L SL L  N  I +I+  LS+ + L+ L L +N +S  +P  L  LT+LQ +
Sbjct: 128 NGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN 522
            +  NH+     +    L  L +L++       +     + L+ P   K  + + +    
Sbjct: 184 YLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

Query: 523 LSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 570
           +S +         +        L    N+++      +   K    F 
Sbjct: 242 ISDD-------GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 26/224 (11%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +   P++  L+L  N  TDI    + L +  NL +L LD +   +  L S+      LK+
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI----KPLANLKNLGWLFLDEN--KVKDLSSLKD-LKKLKS 116

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           LS+    ++ +    G  H   LE L + + +I  + + L      +  L  LSL +   
Sbjct: 117 LSLEHNGISDI---NGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLED--- 165

Query: 121 GTNSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
               ++I D   L  L  LQ LY++ N +       LA + +L +L +   +   +   +
Sbjct: 166 ----NQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPIN 218

Query: 180 PLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN 223
              +L     +  ++     P  +    ++ +  + +      N
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 44/319 (13%), Positives = 99/319 (31%), Gaps = 73/319 (22%)

Query: 131 GLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKL 190
              +     +  +    +  ++      + S+  +  + + +    S   + +L ++ KL
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKL 73

Query: 191 YLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGD 250
           +L+ N       ++PL N   L   + D N++  +++    L     +L  LSL  +   
Sbjct: 74  FLNGNKLT---DIKPLANLKNLGWLFLDENKVK-DLSSLKDLK----KLKSLSLEHNG-- 123

Query: 251 GFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSH 310
                             +S I          L +  +L  L L N+ +       +   
Sbjct: 124 ------------------ISDING--------LVHLPQLESLYLGNNKITDI--TVLSRL 155

Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
            +L  L + +N         I DI                        +  L+ L LS N
Sbjct: 156 TKLDTLSLEDNQ--------ISDI-------------------VPLAGLTKLQNLYLSKN 188

Query: 371 QLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS 430
            ++ ++      G  NL+ L L +        +   NL    +++      +     S  
Sbjct: 189 HIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 431 KCSSLEGLFLNNNNLSGKI 449
                  +  +    + ++
Sbjct: 246 GDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 35/193 (18%)

Query: 50  SIASIFP--SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRI-------------A 94
            I  IF   +         +   +          S++ +  +++ I              
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTK 72

Query: 95  LNTSFLQIIG----ESMPSLKYLSLSNSTRGTNSSRILD-QGLCSLMHLQELYMADNDLR 149
           L  +  ++       ++ +L +L L         +++ D   L  L  L+ L +  N + 
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDE-------NKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 150 GSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNH 209
             +   L ++  L  LY+  N++T     + L  LT ++ L L +N       + PL   
Sbjct: 126 -DIN-GLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIS---DIVPLAGL 177

Query: 210 SRLKIFYADNNEL 222
           ++L+  Y   N +
Sbjct: 178 TKLQNLYLSKNHI 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 27/173 (15%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
            + +L  + L   + + +++  +    +++ L +NN + +   P  +  L+ L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526
             +          L  L +LDIS +                I  KI  L ++ +++LS+N
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDS-----------ILTKINTLPKVNSIDLSYN 146

Query: 527 DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 579
                I      L  ++SL++  + ++      + +   L         + G+
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 7e-15
 Identities = 25/171 (14%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 55  FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLS 114
             SL  ++++   V  L    G  +  +++ L +++     N + +      + +L+ L 
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLR 94

Query: 115 LSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTG 174
           +       + +      L  L  L  L ++ +    S+   +  +  +  + +SYN    
Sbjct: 95  IMG----KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 175 SISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE 225
            I   PL  L  ++ L +  +          + +  +L   YA +  +  +
Sbjct: 151 DI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 6/142 (4%)

Query: 354 SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMS 413
           +     + ++ L ++N   T      ++ G  NLE L +    +          L +L  
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPI 473
           L +  +     I   ++    +  + L+ N     I   L  L  L+ + +  + +    
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 474 PVEFCQLDLLQILDISDNNISG 495
            +E      L  L      I G
Sbjct: 176 GIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 28/174 (16%), Positives = 65/174 (37%), Gaps = 42/174 (24%)

Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
                ++  L  +     I+++  + +SL  + L N N++        DLT ++Y     
Sbjct: 21  TFKAYLNGLLGQSS-TANITEA--QMNSLTYITLANINVT--------DLTGIEY----- 64

Query: 467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526
                           ++ L I++ + +   + +           I  L+ ++ L +   
Sbjct: 65  -------------AHNIKDLTINNIHAT---NYNP----------ISGLSNLERLRIMGK 98

Query: 527 DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 580
           D+T       S L  +  LD+S++  +  I  ++  L  +    ++YN    +I
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 25/194 (12%), Positives = 60/194 (30%), Gaps = 45/194 (23%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
             SL  + L   N TD+      +    N++ L+++             +  P +  L  
Sbjct: 43  MNSLTYITLANINVTDL----TGIEYAHNIKDLTINNI--------HATNYNP-ISGL-- 87

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLDMSSTRIA-LNTSFLQIIGESMPSLKYLSLSNSTRGT 122
                             +LE L +    +       L      + SL  L +S+    +
Sbjct: 88  -----------------SNLERLRIMGKDVTSDKIPNL----SGLTSLTLLDISH----S 122

Query: 123 NSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
                +   + +L  +  + ++ N     +   L  +  L+ L + ++ +        + 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH---DYRGIE 178

Query: 183 HLTSIEKLYLSNNH 196
               + +LY  +  
Sbjct: 179 DFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 16/152 (10%)

Query: 96  NTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILD-QGLCSLMHLQELYMADNDLRGSLPW 154
            +S   I    M SL Y++L+N         + D  G+    ++++L + +       P 
Sbjct: 32  QSSTANITEAQMNSLTYITLAN-------INVTDLTGIEYAHNIKDLTINNIHATNYNP- 83

Query: 155 CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKI 214
            ++ +++L  L +    +T S     L  LTS+  L +S++       L  +    ++  
Sbjct: 84  -ISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNS 140

Query: 215 FYADNNELNAEITQSHSLTAPNFQLSRLSLSS 246
                N    +I    +L     +L  L++  
Sbjct: 141 IDLSYNGAITDIMPLKTLP----ELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 474 PVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP 533
            +   Q++ L  + +++ N++   DL+           I     I+ L +++   T    
Sbjct: 37  NITEAQMNSLTYITLANINVT---DLT----------GIEYAHNIKDLTINNIHATNY-- 81

Query: 534 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 582
           +  S L ++E L +    +       L  L +L +  ++++     I  
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
           +   + L +L ++   +       +     L +LDIS++     I  +I   LP ++  +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIP-EHLAVGCVNLESLVLSNN 395
           +S N     I      +  L+ L++  + +      E        L  L   + 
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 40/171 (23%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
             ++  L +   + T+       +   +NLE L +    +        +   P+L  L  
Sbjct: 65  AHNIKDLTINNIHATNYN----PISGLSNLERLRIMGKDVT-------SDKIPNLSGL-- 111

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTN 123
                             SL  LD+S +    ++   +I   ++P +  + LS +   T+
Sbjct: 112 -----------------TSLTLLDISHSAHD-DSILTKI--NTLPKVNSIDLSYNGAITD 151

Query: 124 SSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTG 174
                   L +L  L+ L +  + +       + +   L  LY     + G
Sbjct: 152 IM-----PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 16/167 (9%)

Query: 157 ANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFY 216
           A M SL  + ++   +T     + + +  +I+ L ++N H     +  P+   S L+   
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 217 ADNNEL-NAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMN 275
               ++ + +I     LT     L+ L +S S  D  I  K +     +   DLS+    
Sbjct: 95  IMGKDVTSDKIPNLSGLT----SLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAI 149

Query: 276 GEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNN 322
            +     L+   +L+ L++  D +       I    +L  L   +  
Sbjct: 150 TDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
               +L  L ++  + T        L   T+L  L +  S+   S+L  I ++ P + ++
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPN--LSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSI 141

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSN 117
            +S      +           L+ L++    +  +   +    E  P L  L   +
Sbjct: 142 DLSYN--GAITDIMPLKTLPELKSLNIQFDGVH-DYRGI----EDFPKLNQLYAFS 190

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 80.0 bits (197), Expect = 9e-16
 Identities = 74/527 (14%), Positives = 153/527 (29%), Gaps = 74/527 (14%)

Query: 27  LHSFTNLEYLSL--------------DFSSLHISLLQSIASIFPSLKNLSMSGCEV-NGL 71
              F NL  L L              ++       +  I++    LK++      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 72  VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQG 131
           +          LE L +        T  L  I      +K L +  S+      + L + 
Sbjct: 129 LDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 132 LCSLMHLQELYMADNDLRG----SLPWCLANMTSLRILYVSY-NQLTGSISSSPLVHLTS 186
                 L+ L     +        L     N  SL  + V     L          +L  
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247

Query: 187 IEKLYLSNNHFRIP--ISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSL 244
                L+ +       ++L       RL + Y   NE+      +  +        +L L
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR-------KLDL 300

Query: 245 SSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL---VNDSLAG 301
             +  +       +    +LE  +  ++  +      L +   +L++L +    ++    
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGME 359

Query: 302 PFRLPIHSH---------KRLGMLDISNNNFRGHIPLEIGDILPSLHVF---------NI 343
                +            + L  + +  ++        IG  L +L  F          I
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 344 SMNALDGSIPSSFGNMNFLRILDLSNN--QLTGEIPEHLAVGCVNLESLVLSN--NSLKG 399
           +   LD  + S       LR          LT     ++     N+  ++L     S +G
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSL-SKCSSLEGLFLNNNNLSGKIPRWLGDLTR 458
            +   +    NL  L++ G  F      +  +K  SL  L++     S      +     
Sbjct: 480 -LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS------MTGQDL 532

Query: 459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLI 505
           +Q +  P  ++E         +   ++ +++      R       ++
Sbjct: 533 MQ-MARPYWNIE--------LIPSRRVPEVNQQGEI-REMEHPAHIL 569

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 63/426 (14%), Positives = 113/426 (26%), Gaps = 41/426 (9%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDF-SSLHISLLQSIASIFPSLKNL 61
           +   L +++      +D+           +LE L LD  S      L SI +    +K L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 62  SMSGCEVNGLVRGQGF----PHFKSLEHLDMSSTRIA-LNTSFLQIIGESMPSLKYLSLS 116
            M     +    G+       H  SLE L+   T  A ++   L+ I  +  SL  + + 
Sbjct: 170 LMEESSFSEK-DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 117 NSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSI 176
           +            +   +L       + ++         L     L  L +SY  +  + 
Sbjct: 229 DFEILELVG--FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY--MGPNE 284

Query: 177 SSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQS--HSLTA 234
                     I KL L             +     L++      E    I       L  
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL-----ETRNVIGDRGLEVLAQ 339

Query: 235 PNFQLSRLSLSSSYGDGFIFPK-----------FLYHQHDLEYADLSHIKMNGEFPTWLL 283
              QL RL +     +  +  +                 +LEY  +    +  E    + 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 284 ENNTKLRQLSLVN---------DSLAGPFRLPIHSHKRLGMLDISNN--NFRGHIPLEIG 332
                L    LV            L    R  +   K+L                   IG
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 333 DILPSLHVFNISMNAL-DGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV 391
              P++    +      D  +         L+ L++     +            +L  L 
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 392 LSNNSL 397
           +     
Sbjct: 520 VQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 72.3 bits (177), Expect = 2e-13
 Identities = 72/554 (12%), Positives = 152/554 (27%), Gaps = 100/554 (18%)

Query: 28  HSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC----EVNGLVRGQGF------ 77
               +     +  +  + +    ++  FP+L++L + G       N +    G       
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWV 104

Query: 78  ----PHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLC 133
                + + L+ +      +  +    ++       L+ L L         S     GL 
Sbjct: 105 TEISNNLRQLKSVHFRRMIV-SDLDLDRLAKARADDLETLKLD------KCSGFTTDGLL 157

Query: 134 SLM----HLQELYMADNDLR-------GSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
           S++     ++ L M ++            L     ++  L      + +++     +   
Sbjct: 158 SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217

Query: 183 HLTSIEKLYLSNNHFRIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241
           +  S+  + + +      + L   F   + L+ F   +   +  + + +       +L R
Sbjct: 218 NCRSLVSVKVGDFEI---LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVND-SLA 300
           L LS    +    P        +   DL +  +  E    L++    L  L   N     
Sbjct: 275 LGLSYMGPNE--MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR 332

Query: 301 GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMN 360
           G   L     K+L  L I           E G       V    + AL            
Sbjct: 333 GLEVL-AQYCKQLKRLRIERG------ADEQGMEDEEGLVSQRGLIALAQGCQE------ 379

Query: 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH 420
            L  + +  + +T E  E +     NL    L               L     +      
Sbjct: 380 -LEYMAVYVSDITNESLESIGTYLKNLCDFRLV-------------LLDREERITDLPLD 425

Query: 421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQL 480
               +   L  C  L                 L DL  L YI             ++   
Sbjct: 426 --NGVRSLLIGCKKLRRFAFYLR------QGGLTDLG-LSYI------------GQYSP- 463

Query: 481 DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT-GSIPSTFSNL 539
             ++ + +     S   D    +              +Q L +     +  +I +  + L
Sbjct: 464 -NVRWMLLGYVGES---DEGLMEF-------SRGCPNLQKLEMRGCCFSERAIAAAVTKL 512

Query: 540 KHVESLDLSNNKLN 553
             +  L +   + +
Sbjct: 513 PSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 21/186 (11%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +        +       +     A        LEY+++  S +    L+SI +   +L +
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIA-LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 61  LSMSGCEVNGLVRGQGFP--------HFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKY 112
             +   +    +                K L        +  L    L  IG+  P++++
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467

Query: 113 LSLSNSTRGTNSSRILDQGLCSLMH----LQELYMADNDL-RGSLPWCLANMTSLRILYV 167
           + L             D+GL         LQ+L M        ++   +  + SLR L+V
Sbjct: 468 MLLGY-------VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520

Query: 168 SYNQLT 173
              + +
Sbjct: 521 QGYRAS 526

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 42/191 (21%), Positives = 66/191 (34%), Gaps = 20/191 (10%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421
             IL LS N L         +    L  L L    L       +  L  L +L L  N  
Sbjct: 33  TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQ- 88

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNNHLEGPIPVEFCQL 480
           +  +        +L  L ++ N L+  +P      L  LQ + +  N L+   P      
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 481 DLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTFSNL 539
             L+ L +++NN++             +P  +   L  + TL L  N L  +IP  F   
Sbjct: 148 PKLEKLSLANNNLTE------------LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 540 KHVESLDLSNN 550
             +    L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 25/216 (11%)

Query: 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL 414
               +     ++     LT  +P  L     +   L LS N L     +       L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 415 QLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP 474
            L+    + ++ Q       L  L L++N L   +P     L  L  + +  N L   +P
Sbjct: 61  NLDRAE-LTKL-QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LP 116

Query: 475 VE-FCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSI 532
           +     L  LQ L +  N +              +PP +     +++ L+L++N+LT  +
Sbjct: 117 LGALRGLGELQELYLKGNELKT------------LPPGLLTPTPKLEKLSLANNNLT-EL 163

Query: 533 PS-TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 567
           P+   + L+++++L L  N L   IP        L 
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMN 346
                L L  + L       +  + RL  L++          L++   LP L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 347 ALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMFS 403
            L  S+P     +  L +LD+S N+LT  +P     G   L+ L L  N LK     + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 404 RNFNLANLMSLQLEGNHFIGEISQSLS-----KCSSLEGLFLNNNNLSGKIPRWLGDLTR 458
                  L  L L  N+        L         +L+ L L  N+L   IP+       
Sbjct: 146 P---TPKLEKLSLANNNL-----TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHL 196

Query: 459 LQYIIMPNN 467
           L +  +  N
Sbjct: 197 LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 46/269 (17%), Positives = 84/269 (31%), Gaps = 73/269 (27%)

Query: 130 QGLCSLMHLQELYMADNDLRGSLPWCLANM-TSLRILYVSYNQLTGSISSSPLVHLTSIE 188
             + S     E+     +L  +LP    ++     IL++S N L  + S + L+  T + 
Sbjct: 7   SKVASH---LEVNCDKRNLT-ALP---PDLPKDTTILHLSENLLY-TFSLATLMPYTRLT 58

Query: 189 KLYLSNNHFRIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSS 247
           +L L        ++   +      L      +N+L +      +L      L+ L +S +
Sbjct: 59  QLNLDRAE----LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFN 110

Query: 248 YGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPI 307
                                L+ +      P   L    +L++L L             
Sbjct: 111 --------------------RLTSL------PLGALRGLGELQELYL------------- 131

Query: 308 HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSS-FGNMNFLRILD 366
                        N  +  +P  +    P L   +++ N L   +P+     +  L  L 
Sbjct: 132 -----------KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 367 LSNNQLTGEIPEHLAVGCVNLESLVLSNN 395
           L  N L   IP+    G   L    L  N
Sbjct: 179 LQENSLYT-IPKG-FFGSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 31/223 (13%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN----SLKGHMFSRNFNLANLMSLQLE 417
            + L L    L   IP H      N+  + +S +     L+ H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 418 GNHFIGEISQS-LSKCSSLEGLFLNNNNLSGKIP--RWLGDLTRLQYIIMPNNHLEGPIP 474
               +  I    L +   L+ L + N  L    P    +        + + +N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 475 VE-FCQL-DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSI 532
           V  F  L +    L + +N  +             +     N T++  + L+ N     I
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTS------------VQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 533 PS-TFSNLKHV-ESLDLSNNKLN---GKIPHQLVELKTLEVFS 570
               F  +      LD+S   +     K    L EL     ++
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 34/185 (18%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPS-SFGNMNFLRILDLSNNQLTG 374
           L +   + R  IP      LP++    +S++     + S SF N++ +  +++ N +   
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 375 EIPEHLAVGCVNLESLVLSNNSLKG-HMFSRNFNLANLMSLQLEGNHFIGEISQSL--SK 431
            I          L+ L + N  LK     ++ ++      L++  N ++  I  +     
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 432 CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI-IMPNNHLEGPIPVEFCQL-DLLQILDIS 489
           C+    L L NN  +  +  +  + T+L  + +  N +L       F  +     +LD+S
Sbjct: 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 490 DNNIS 494
             +++
Sbjct: 214 QTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 20/155 (12%)

Query: 432 CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491
           C   E   +   ++  +IP        L+   +   HL       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 492 NISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSN 549
                        +  +      NL+++  + + +      I       L  ++ L + N
Sbjct: 66  V-----------TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 550 NKLNGKIPHQ--LVELKTLEVFSVAYNNLSGEIPE 582
             L    P    +       +  +  N     IP 
Sbjct: 115 TGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIF---PSLKNL 61
           PS  TL L+  +   I + A    +  N+  + +    + +  L+  +  F     + ++
Sbjct: 31  PSTQTLKLIETHLRTIPSHA--FSNLPNISRIYVS-IDVTLQQLE--SHSFYNLSKVTHI 85

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIG-ESMPSLKYLSLSNSTR 120
            +        +          L+ L + +T +     F  +    S      L ++++  
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGL---KMFPDLTKVYSTDIFFILEITDNPY 142

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSP 180
            T+      QGLC+      L + +N    S+     N T L  +Y++ N+    I    
Sbjct: 143 MTSIPVNAFQGLCNE--TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 181 LVHLTS-IEKLYLSNNHFR 198
              + S    L +S     
Sbjct: 200 FGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRILY 166
           PS + L L      T+   I      +L ++  +Y++ +     L      N++ +  + 
Sbjct: 31  PSTQTLKLIE----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 167 VSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEI 226
           +   +    I    L  L  ++ L + N   ++   L  +++     I    +N     I
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 227 TQSHSLTAPNFQLSRLSLSS 246
              ++      +   L L +
Sbjct: 147 -PVNAFQGLCNETLTLKLYN 165

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 46/313 (14%), Positives = 89/313 (28%), Gaps = 90/313 (28%)

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
                  V+   +   I S P     S + L L   H R   ++           F    
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLP----PSTQTLKLIETHLR---TIPS-------HAF---- 51

Query: 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
                      +L      +SR+ +S       +     Y+   + + ++ + +      
Sbjct: 52  ----------SNLP----NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97

Query: 280 TWLLENNTKLRQLSLVNDSLAG-PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSL 338
              L+    L+ L + N  L   P    ++S     +L+I++N +   IP          
Sbjct: 98  PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP---------- 147

Query: 339 HVFNISMNALDGSIPSSFGNM-NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSL 397
                          ++F  + N    L L NN  T  +  +                  
Sbjct: 148 --------------VNAFQGLCNETLTLKLYNNGFT-SVQGYA----------------- 175

Query: 398 KGHMFSRNFNLANLMSLQLEGNHFIGEISQSL--SKCSSLEGLFLNNNNLSGKIPRWLGD 455
                   FN   L ++ L  N ++  I +       S    L ++  +++    + L  
Sbjct: 176 --------FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

Query: 456 LTRLQYIIMPNNH 468
           L  L      N  
Sbjct: 228 LKELIAR---NTW 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 7e-15
 Identities = 57/323 (17%), Positives = 101/323 (31%), Gaps = 30/323 (9%)

Query: 304 RLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSS-FGNMNFL 362
            +P    +    L       R  I          L    IS N +   I +  F N+  L
Sbjct: 23  EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 363 RILDLSN-NQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421
             + +   N L   I         NL+ L++SN  +K        +    + L ++ N  
Sbjct: 82  HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 422 IGEISQSLSK--CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE-FC 478
           I  I ++           L+LN N +              +  +  NN+LE  +P + F 
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFH 199

Query: 479 QLDLLQILDISDNNISG-------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSH 525
                 ILDIS   I                      K +  +      L  +   +L++
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTY 255

Query: 526 NDLTGSIPSTFSN-LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWE 584
                S    F+N  + +  L    NK   +     +     +  S+A +N S     ++
Sbjct: 256 P----SHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFD 311

Query: 585 AQFATFNENSYEGNTFLCGLPLP 607
             +  F+ +       +   P P
Sbjct: 312 MTYTEFDYDLCNEVVDVTCSPKP 334

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 32/246 (13%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
                +     IP    D+  +       +  L      +F     L  +++S N +   
Sbjct: 14  FLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 376 IPEHLAVGCVNLESLVLSNN----SLKGHMFSRNFNLANLMSLQLEGNHFIGEISQ-SLS 430
           I   +      L  + +        +    F    NL NL  L +     I  +      
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTG-IKHLPDVHKI 125

Query: 431 KCSSLEGLFLNNNNLSGKIP-RWLGDLT-RLQYIIMPNNHLEGPIPVE-FCQLDLLQILD 487
                  L + +N     I       L+     + +  N ++  I    F    L ++  
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNL 184

Query: 488 ISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESL 545
             +NN+              +P  +    +    L++S   +  S+PS    NLK + + 
Sbjct: 185 SDNNNLEE------------LPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR 231

Query: 546 DLSNNK 551
              N K
Sbjct: 232 STYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 35/247 (14%), Positives = 74/247 (29%), Gaps = 20/247 (8%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
             +   L  +      I   A     F +LE + +  + +   +   + S  P L  + +
Sbjct: 29  PRNAIELRFVLTKLRVIQKGA--FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 64  SGCEVNGL--VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRG 121
                N L  +  + F +  +L++L +S+T I        +          L + ++   
Sbjct: 87  EKA--NNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINI 141

Query: 122 TNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
               R    GL        L++  N ++              +     N L   + +   
Sbjct: 142 HTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVF 198

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR 241
              +    L +S       +    L N  +L+     N +   ++     L      L  
Sbjct: 199 HGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLEKLV----ALME 250

Query: 242 LSLSSSY 248
            SL+   
Sbjct: 251 ASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 44/282 (15%), Positives = 95/282 (33%), Gaps = 54/282 (19%)

Query: 48  LQSI-ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGES 106
           +  I + +  +   L     ++  + +G  F  F  LE +++S   +      L++I   
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDV------LEVIEAD 73

Query: 107 ----MPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL 162
               +P L  + +  +        I  +   +L +LQ L +++  ++        +    
Sbjct: 74  VFSNLPKLHEIRIEKANNLLY---INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 163 RILYVSYNQLTGSISSSPLVHLTS-IEKLYLSNNHFRIPISLEP-LFNHSRL-KIFYADN 219
            +L +  N    +I  +  V L+     L+L+ N  +    +    FN ++L ++  +DN
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDN 187

Query: 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
           N L                              +     +        D+S  +++   P
Sbjct: 188 NNLEE----------------------------LPNDVFHGASGPVILDISRTRIH-SLP 218

Query: 280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNN 321
           ++ LEN  KLR  S  N                L    ++  
Sbjct: 219 SYGLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 37/284 (13%), Positives = 70/284 (24%), Gaps = 59/284 (20%)

Query: 137 HLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN-N 195
           +  EL      LR       +    L  + +S N +   I +    +L  + ++ +   N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 196 HFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFP 255
           +    I+ E   N   L+     N  +         L   +                   
Sbjct: 91  NLLY-INPEAFQNLPNLQYLLISNTGI-------KHLPDVHKI----------------- 125

Query: 256 KFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGM 315
               H       D+                N  +  +          F           +
Sbjct: 126 ----HSLQKVLLDIQD--------------NINIHTIE------RNSFV---GLSFESVI 158

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           L ++ N  +  I     +      +     N L+      F   +   ILD+S  ++   
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN 419
           +P +       L +    N             L  LM   L   
Sbjct: 217 LPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 33/213 (15%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
              +     L   + TD+ +        + ++  + D S  +I  L  +   F +LK L 
Sbjct: 17  GLANAVKQNLGKQSVTDLVS----QKELSGVQNFNGDNS--NIQSLAGMQF-FTNLKELH 69

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
           +S    N +           LE L ++  R+        + G     L  L L N     
Sbjct: 70  LSH---NQISDLSPLKDLTKLEELSVNRNRLK------NLNGIPSACLSRLFLDN----- 115

Query: 123 NSSRILD-QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPL 181
             + + D   L  L +L+ L + +N L+ S+   L  ++ L +L +  N++T   ++  L
Sbjct: 116 --NELRDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT---NTGGL 168

Query: 182 VHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKI 214
             L  +  + L+          EP+     L I
Sbjct: 169 TRLKKVNWIDLTGQ----KCVNEPVKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 29/212 (13%)

Query: 27  LHSFTNLEYLSLDFSSL-HISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEH 85
                N    +L   S+  +   +        ++N +      + +    G   F +L+ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDN---SNIQSLAGMQFFTNLKE 67

Query: 86  LDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMAD 145
           L +S  +I+ + S L    + +  L+ LS++ +       R+ +        L  L++ +
Sbjct: 68  LHLSHNQIS-DLSPL----KDLTKLEELSVNRN-------RLKNLNGIPSACLSRLFLDN 115

Query: 146 NDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEP 205
           N+LR +    L ++ +L IL +  N+L    S   L  L+ +E L L  N      +   
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGG 167

Query: 206 LFNHSRLKIFYADNNEL-NAEITQSHSLTAPN 236
           L    ++        +  N  +     L   N
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 25/202 (12%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421
               +L    +T  + +        +++    N++++    +      NL  L L  N  
Sbjct: 21  AVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ- 74

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLD 481
           I ++S  L   + LE L +N N L   +         L  + + NN L          L 
Sbjct: 75  ISDLS-PLKDLTKLEELSVNRNRLK-NLN--GIPSACLSRLFLDNNELRDTDS--LIHLK 128

Query: 482 LLQILDISDNNIS-----------GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG 530
            L+IL I +N +              LDL  N++       +  L ++  ++L+      
Sbjct: 129 NLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVN 186

Query: 531 SIPSTFSNLKHVESLDLSNNKL 552
                   L    ++   + + 
Sbjct: 187 EPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 24/171 (14%)

Query: 407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN 466
            LAN +   L     + ++  S  + S ++    +N+N+   +   +   T L+ + + +
Sbjct: 17  GLANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72

Query: 467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN 526
           N +    P++   L  L+ L ++ N +     +    L                L L +N
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRLKNLNGIPSACL--------------SRLFLDNN 116

Query: 527 DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           +L      +  +LK++E L + NNKL   I   L  L  LEV  +  N ++
Sbjct: 117 ELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 50/211 (23%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
           ++  T L++L L ++ ++     P+    +L  L ++ N  +    +        L    
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLF 112

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF 402
           +  N L      S  ++  L IL + NN+L             ++  L            
Sbjct: 113 LDNNEL--RDTDSLIHLKNLEILSIRNNKLK------------SIVMLG----------- 147

Query: 403 SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
                L+ L  L L GN  I      L++   +  + L       +  ++  +L     +
Sbjct: 148 ----FLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNI 493
             P+                +    IS+   
Sbjct: 202 KDPDG-------------RWISPYYISNGGS 219

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 81/449 (18%), Positives = 158/449 (35%), Gaps = 59/449 (13%)

Query: 27  LHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCE------VNGLVRGQGFPHF 80
             S+T LE + L    +    L+ IA  F + K L +S CE      +  +         
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-----C 155

Query: 81  KSLEHLDMSSTRIALNT-SFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH-- 137
           ++L+ LD+  + +   +  +L    ++  SL  L++S       +S +    L  L+   
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL-----ASEVSFSALERLVTRC 210

Query: 138 --LQELYMADNDLRGSLPWCLANMTSLRILYVSY--NQLTGSISSSPLVHLTSIEKL-YL 192
             L+ L +        L   L     L  L       ++   + S   V L+  ++L  L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 193 SNNHFRIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDG 251
           S     +P  L  +++  SRL         + +          P   L RL +     D 
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK--LQRLWVLDYIEDA 328

Query: 252 FIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHK 311
            +         DL    +   +        ++E N  L +  LV  S++           
Sbjct: 329 GLEV-LASTCKDLRELRVFPSEPF------VMEPNVALTEQGLV--SVS-------MGCP 372

Query: 312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNIS-----------MNALDGSIPSSFGNMN 360
           +L  +            + I    P++  F +            +  LD    +   +  
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS--NNSLKGHMFSRNFNLANLMSLQLEG 418
            LR L LS   LT ++ E++      +E L ++   +S  G M        +L  L++  
Sbjct: 433 DLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRD 490

Query: 419 NHFIGE-ISQSLSKCSSLEGLFLNNNNLS 446
             F  + +  + SK  ++  L++++ ++S
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 83/571 (14%), Positives = 165/571 (28%), Gaps = 136/571 (23%)

Query: 28  HSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCE----VNGLVRGQG------- 76
           +         +   + +     ++   FP ++++ + G       N +  G G       
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 77  ---FPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLC 133
                 +  LE + +    +      L++I +S  + K L LS      +       GL 
Sbjct: 98  EAMSSSYTWLEEIRLKRMVV--TDDCLELIAKSFKNFKVLVLS------SCEGFSTDGLA 149

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHL----TSIEK 189
           ++                     A   +L+ L +  + +   +S   L H     TS+  
Sbjct: 150 AI--------------------AATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVS 188

Query: 190 LYLSNNHFRI-PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSY 248
           L +S     +   +LE L                                L  L L+ + 
Sbjct: 189 LNISCLASEVSFSALERLVTRCP--------------------------NLKSLKLNRAV 222

Query: 249 GDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTW-----LLENNTKLRQLSLVNDSLAGPF 303
               +    L     LE               +      L    +LR LS   D++    
Sbjct: 223 PLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 304 RLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLR 363
                   RL  L++S    + +  +++    P L    +     D  +         LR
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341

Query: 364 ILDLS---------NNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSR-NFNLANLMS 413
            L +          N  LT +    +++GC  LES++     +          N  N+  
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401

Query: 414 LQLEGNHFIGEISQS-----------LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
            +L           +           +  C  L  L     +LSG     L D    +YI
Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL-----SLSG----LLTDKV-FEYI 451

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN 522
                               +++L ++    S   DL  + +       +     ++ L 
Sbjct: 452 GT--------------YAKKMEMLSVAFAGDS---DLGMHHV-------LSGCDSLRKLE 487

Query: 523 LSH-NDLTGSIPSTFSNLKHVESLDLSNNKL 552
           +        ++ +  S L+ + SL +S+  +
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 4e-13
 Identities = 55/320 (17%), Positives = 107/320 (33%), Gaps = 24/320 (7%)

Query: 278 FPTWLL-----ENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIG 332
           +  WLL      +      +S     L+  F  P+    R+G L +  +     +     
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 333 DILPS---LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES 389
           D       + + ++   +L+  +P     + +          L  + PE         E 
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKI 449
           L     S++         L +   LQ         +   +    +L+ L      L    
Sbjct: 351 LFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 450 PRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS-----------GRLD 498
                D  R  Y+    +       V   +   +++L ++  +++             LD
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469

Query: 499 LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG-KIP 557
           LS N+L   +PP +  L  ++ L  S N L  ++    +NL  ++ L L NN+L      
Sbjct: 470 LSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAI 526

Query: 558 HQLVELKTLEVFSVAYNNLS 577
             LV    L + ++  N+L 
Sbjct: 527 QPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 28/224 (12%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
             +   L+    +         EL S   L+ L  +     ++++         ++ L  
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-------MRALDP 397

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLD-----MSSTRIALNTSFLQIIGESMPSLKYLSLSNS 118
              E   L       +F +L+ +D           +       ++      ++ L L++ 
Sbjct: 398 LLYEKETL------QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH- 450

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
                   +L   L  L+ +  L ++ N LR +LP  LA +  L +L  S N L    + 
Sbjct: 451 ----KDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NV 501

Query: 179 SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
             + +L  +++L L NN  +   +++PL +  RL +     N L
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYL-------SLDFSSLHISLLQSIASIF 55
           +   L T+ LL      +    + L  F+ L+ +         D  S  +     +   +
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 56  PSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSL 115
             ++ L ++      L           + HLD+S  R+    +    +  ++  L+ L  
Sbjct: 441 ADVRVLHLAH---KDLTVLCHLEQLLLVTHLDLSHNRL---RALPPAL-AALRCLEVLQA 493

Query: 116 SNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLT 173
           S+     N+   +D G+ +L  LQEL + +N L+  +    L +   L +L +  N L 
Sbjct: 494 SD-----NALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 61/352 (17%), Positives = 106/352 (30%), Gaps = 26/352 (7%)

Query: 70  GLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSL--KYLSLSNSTRGTNSSRI 127
            L+            H+      +++  S    +G  M +L         S         
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 128 LDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSI 187
                  L  L    + D   + +         S +   +  ++       S       +
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA--TDEQL 351

Query: 188 EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN-ELNAEITQSHSLTAPNFQLSRLSLSS 246
            +  LS    +  +    L +   L+    +N   L   I    +L    ++   L   S
Sbjct: 352 FRCELSVE--KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 247 SYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLP 306
           +     + P    +  DL    L    +              +R L L +  L     L 
Sbjct: 410 TLKA--VDPMRAAYLDDLRSKFLLENSVL-------KMEYADVRVLHLAHKDLT---VLC 457

Query: 307 -IHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRIL 365
            +     +  LD+S+N  R  +P  +   L  L V   S NAL+ ++     N+  L+ L
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE-NVDG-VANLPRLQEL 513

Query: 366 DLSNNQLTG-EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL 416
            L NN+L      + L   C  L  L L  NSL      +      L S+  
Sbjct: 514 LLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
           +     +  L L  N    +      L +   LE L    S   +  +  +A+  P L+ 
Sbjct: 459 LEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQA--SDNALENVDGVAN-LPRLQE 512

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYL 113
           L +    +      Q       L  L++    +       + + E +PS+  +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 40/210 (19%)

Query: 352 IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFNL 408
           IP+        + LDL +N+L+  +P         L  L L++N L+     +F     L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---L 84

Query: 409 ANLMSLQLEGNHFIGEISQSL-----SKCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYI 462
            NL +L +  N       Q+L      +  +L  L L+ N L   +P  + D LT+L Y+
Sbjct: 85  KNLETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138

Query: 463 IMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQT 520
            +  N L+  +P   F +L  L+ L + +N +              +P      LT ++T
Sbjct: 139 SLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKR------------VPEGAFDKLTELKT 185

Query: 521 LNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550
           L L +N L       F +L+ ++ L L  N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 49/196 (25%), Positives = 77/196 (39%), Gaps = 20/196 (10%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSI-ASIFPSLKNLS 62
                 L L  N  + + + A   H  T L  L L+ + L     Q++ A IF  LKNL 
Sbjct: 36  PADTKKLDLQSNKLSSLPSKA--FHRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLE 88

Query: 63  MSGCEVNGL--VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
                 N L  +    F    +L  L +   ++    S    + +S+  L YLSL     
Sbjct: 89  TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL---KSLPPRVFDSLTKLTYLSLGY--- 142

Query: 121 GTNSSRILDQGLC-SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSS 179
             N  + L +G+   L  L+EL + +N L+         +T L+ L +  NQL   +   
Sbjct: 143 --NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEG 199

Query: 180 PLVHLTSIEKLYLSNN 195
               L  ++ L L  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 28/170 (16%)

Query: 433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDN 491
           +  + L L +N LS    +    LT+L+ + + +N L+  +P   F +L  L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 492 NIS-------------GRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TF 536
            +                L L  N+L   +PP++  +LT++  L+L +N+L  S+P   F
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 537 SNLKHVESLDLSNNKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 582
             L  ++ L L NN+L  ++P     +L ELKTL++     NN    +PE
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 433 SSLEGLFLNNNNLSGKIPRW-LGDLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISD 490
           S    L L++NNLS     W    LT L  +++ +NHL   I  E F  +  L+ LD+S 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSS 97

Query: 491 NNISG-------------RLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPSTF 536
           N++                L L  N  I  +      ++ ++Q L LS N ++       
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 537 SN---LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 575
            +   L  +  LDLS+NKL       L +L       +  +N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 48/199 (24%), Positives = 74/199 (37%), Gaps = 44/199 (22%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421
             +LDLS+N L+    E       NL SL+LS+N L                +       
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------------FIS------ 80

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE-FCQL 480
               S++     +L  L L++N+L         DL  L+ +++ NNH+   +    F  +
Sbjct: 81  ----SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDM 135

Query: 481 DLLQILDISDNNISGRLDLSCNKLIGPIPPKI----GNLTRIQTLNLSHNDLTGSIPSTF 536
             LQ L +S N IS              P ++      L ++  L+LS N L     +  
Sbjct: 136 AQLQKLYLSQNQISR------------FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 537 SNLK--HVESLDLSNNKLN 553
             L       L L NN L 
Sbjct: 184 QKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 31/172 (18%), Positives = 70/172 (40%), Gaps = 20/172 (11%)

Query: 82  SLEHLDMSS---TRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQG-LCSLMH 137
               LD+S    +R+    +        + +L  L LS+     N    +       + +
Sbjct: 40  YTALLDLSHNNLSRLRAEWTP-----TRLTNLHSLLLSH-----NHLNFISSEAFVPVPN 89

Query: 138 LQELYMADNDLRGSLPW-CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNH 196
           L+ L ++ N L  +L     +++ +L +L +  N +   +  +    +  ++KLYLS N 
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 197 F-RIPI-SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 246
             R P+  ++      +L +    +N+L  ++  +     P +  + L L +
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 49/214 (22%), Positives = 78/214 (36%), Gaps = 46/214 (21%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
                 L L  NN + +          TNL  L L  S  H++ + S A           
Sbjct: 38  PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLL--SHNHLNFISSEA----------- 83

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLDMSSTRI-ALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
                        F    +L +LD+SS  +  L+          + +L+ L L N     
Sbjct: 84  -------------FVPVPNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYN----- 121

Query: 123 NSSRILDQG-LCSLMHLQELYMADNDLRGSLPW----CLANMTSLRILYVSYNQLTGSIS 177
           N   ++D+     +  LQ+LY++ N +    P         +  L +L +S N+L   + 
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLP 179

Query: 178 SSPLVHLTSIEK--LYLSNNHFRIPISLEPLFNH 209
            + L  L +  K  LYL NN       L  LF+H
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSH 213

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 46/334 (13%), Positives = 91/334 (27%), Gaps = 88/334 (26%)

Query: 286 NTKLRQLSLVNDSL----AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDIL---PSL 338
              +   SL  D++           +     +  + +S N         + + +     L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 339 HVFNISMNALD----------GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVG---CV 385
            +   S                 +  +      L  + LS+N       E L        
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 386 NLESLVLSNNSL-------------KGHMFSRNFNLANLMSLQLEGNHFIGE-----ISQ 427
            LE L L NN L             +  +  +  N   L S+    N  +        ++
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 181

Query: 428 SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 487
           +      L  + +  N +  +     G    L   +     L+              +LD
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLAYCQELK--------------VLD 222

Query: 488 ISDNNISG-----------------RLDLSCNKL-------IGPIPPKIGNLTRIQTLNL 523
           + DN  +                   L L+   L       +     K+ N+  +QTL L
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRL 281

Query: 524 SHNDLTGS-----IPSTFSNLKHVESLDLSNNKL 552
            +N++               +  +  L+L+ N+ 
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 31/223 (13%)

Query: 5   PSLNTLYLLFNNFTD--IATTAQELHSFTNLEYLSLDF------------SSLHISLLQS 50
           P L+T+ L  N F           L   T LE+L L               +L    +  
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 51  IASIFPSLKNLSMSGC--EVNGLVR-GQGFPHFKSLEHLDMSSTRIALNTSFLQIIGE-- 105
            A   P L+++       E   +    + F   + L  + M    I        ++ E  
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR-PEGIEHLLLEGL 212

Query: 106 -SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM----- 159
                LK L L ++T     S  L   L S  +L+EL + D  L       + +      
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 160 -TSLRILYVSYNQLTG----SISSSPLVHLTSIEKLYLSNNHF 197
              L+ L + YN++      ++ +     +  +  L L+ N F
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 60/329 (18%), Positives = 105/329 (31%), Gaps = 68/329 (20%)

Query: 283 LENNTKLRQLSLVNDSL----AGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDIL--- 335
           L  +  ++++ L  +++    A      I S K L + + S+  F G +  EI + L   
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLL 86

Query: 336 -------PSLHVFNISMNAL--DG--SIPSSFGNMNFLRILDLSNNQLTGE--------- 375
                  P LH   +S NA        +         L  L L NN L  +         
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 146

Query: 376 ---IPEHLAVGCVNLESLVLSNNSLK-------GHMFSRNFNLANLMSLQLEGNHFIGE- 424
                   A     L S++   N L+          F  +     L ++++  N    E 
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEG 203

Query: 425 ----ISQSLSKCSSLEGLFLNNNNLSGK----IPRWLGDLTRLQYIIMPNNHL--EGPIP 474
               + + L+ C  L+ L L +N  +      +   L     L+ + + +  L   G   
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 475 V----EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT- 529
           V       +   LQ L +  N I      +   L   I      +  +  L L+ N  + 
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIE---LDAVRTLKTVID---EKMPDLLFLELNGNRFSE 317

Query: 530 -----GSIPSTFSNLKHVESLDLSNNKLN 553
                  I   FS     E  +L + +  
Sbjct: 318 EDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 62/295 (21%)

Query: 337 SLHVFNISMNALDG----SIPSSFGNMNFLRILDLSNNQLTGE----IPEHLAVGCVNLE 388
           S+   ++ ++A+      S+ +     + ++ + LS N +  E    + E++A    +LE
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLE 63

Query: 389 SLVLSNNSLK-------------GHMFSRNFNLANLMSLQLEGNHF----IGEISQSLSK 431
               S+                      +      L +++L  N F       +   LSK
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKC---PKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 432 CSSLEGLFLNNNNLS-------------GKIPRWLGDLTRLQYIIMPNNHLEGP----IP 474
            + LE L+L+NN L                + +   +   L+ II   N LE        
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 475 VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG---- 530
             F    LL  + +  N I          L+      +     ++ L+L  N  T     
Sbjct: 181 KTFQSHRLLHTVKMVQNGIR---PEGIEHLLLEG---LAYCQELKVLDLQDNTFTHLGSS 234

Query: 531 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL------KTLEVFSVAYNNLSGE 579
           ++     +  ++  L L++  L+ +    +V+         L+   + YN +  +
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 49/334 (14%), Positives = 103/334 (30%), Gaps = 68/334 (20%)

Query: 109 SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDL--RG--SLPWCLANMTSLRI 164
           S++  SL      T   + +   L     ++E+ ++ N +       L   +A+   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 165 LYVSYNQLTGSISSSP---------LVHLTSIEKLYLSNNHFR----IPISLEPLFNHSR 211
              S           P         L+    +  + LS+N F      P+  + L  H+ 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTP 123

Query: 212 LKIFYADNNELNAE----------ITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQ 261
           L+  Y  NN L  +              +        L  +                   
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR--------------- 168

Query: 262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSL-----AGPFRLPIHSHKRLGML 316
           + LE   +       +      +++  L  + +V + +            +   + L +L
Sbjct: 169 NRLENGSMKEW---AK----TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 317 DISNNNFRGHIPLEIGDIL---PSLHVFNISMNALDG----SIPSSFGNMNF--LRILDL 367
           D+ +N F       +   L   P+L    ++   L      ++  +F  +    L+ L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 368 SNNQLTGE----IPEHLAVGCVNLESLVLSNNSL 397
             N++  +    +   +     +L  L L+ N  
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 46/222 (20%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATT--AQELHSFTNLEYLSLDFSSLHISLLQSIASIF--- 55
           M  F S+    L  +  T          L    +++ + L  +++     + ++      
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 56  PSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM---PSLKY 112
             L+    S      +                            L+++ +++   P L  
Sbjct: 60  KDLEIAEFSDIFTGRV---------------------KDEIPEALRLLLQALLKCPKLHT 98

Query: 113 LSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDL-------------RGSLPWCLANM 159
           + LS++  G  +   L   L     L+ LY+ +N L               ++     N 
Sbjct: 99  VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158

Query: 160 TSLRILYVSYNQLT--GSIS-SSPLVHLTSIEKLYLSNNHFR 198
             LR +    N+L        +        +  + +  N  R
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 30/197 (15%)

Query: 5   PSLNTLYLLFNNFTDIATTA-----------QELHSFTNLEYLSLDFSSLHISLLQSIAS 53
             L  LYL  N     A              ++  +   L  +    + L    ++  A 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 54  IF---PSLKNLSMSGCEVN--GLVR--GQGFPHFKSLEHLDMSSTRIALNTSFLQIIGE- 105
            F     L  + M    +   G+     +G  + + L+ LD+         S    +   
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS--SALAIA 239

Query: 106 --SMPSLKYLSLSNSTRGTNSSRILDQGL--CSLMHLQELYMADNDLRGSLPWCLA---- 157
             S P+L+ L L++       +  +         + LQ L +  N++       L     
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 158 -NMTSLRILYVSYNQLT 173
             M  L  L ++ N+ +
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 39/192 (20%), Positives = 73/192 (38%), Gaps = 8/192 (4%)

Query: 26  ELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEH 85
           E  S   ++++ L  S + +S L  I S    L+NLS+ G  ++  +         +L  
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVR 146

Query: 86  LDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSS-RILDQGLCSLMHLQELYMA 144
           L++S      +   LQ +  S   L  L+LS     T    ++    +     + +L ++
Sbjct: 147 LNLSGCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLS 203

Query: 145 DNDLR---GSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI 201
                     L   +    +L  L +S + +  +        L  ++ L LS  +  IP 
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263

Query: 202 SLEPLFNHSRLK 213
           +L  L     LK
Sbjct: 264 TLLELGEIPTLK 275

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 10/243 (4%)

Query: 208 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYA 267
             +  +  +   +     +    +    +  +       S+ D  +   F   +  +++ 
Sbjct: 41  RLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHM 98

Query: 268 DLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISN-NNFRGH 326
           DLS+  +       +L   +KL+ LSL    L+ P    +  +  L  L++S  + F   
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 327 IPLEIGDILPSLHVFNIS--MNALDGSIPSSFG-NMNFLRILDLS--NNQLTGEIPEHLA 381
               +      L   N+S   +  +  +  +       +  L+LS     L       L 
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

Query: 382 VGCVNLESLVLSN-NSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLF 439
             C NL  L LS+   LK   F   F L  L  L L   + I   +   L +  +L+ L 
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278

Query: 440 LNN 442
           +  
Sbjct: 279 VFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 44/248 (17%), Positives = 87/248 (35%), Gaps = 32/248 (12%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           LD++  N    +   +  +   +  F    + +D  +   F     ++ +DLSN+ +   
Sbjct: 52  LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 108

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE--ISQSLSKCS 433
               +   C  L++L L    L   + +     +NL+ L L G     E  +   LS CS
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168

Query: 434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL-DISDNN 492
            L+ L L+             +      +   +  +         QL+L     ++  ++
Sbjct: 169 RLDELNLSWCF-------DFTEKHVQVAVAHVSETIT--------QLNLSGYRKNLQKSD 213

Query: 493 ISG---------RLDLS-CNKLIGPIPPKIGNLTRIQTLNLSH-NDLTGSIPSTFSNLKH 541
           +S           LDLS    L      +   L  +Q L+LS   D+          +  
Sbjct: 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273

Query: 542 VESLDLSN 549
           +++L +  
Sbjct: 274 LKTLQVFG 281

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 69  NGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRIL 128
             + +   + +      LD+   +I      ++ +G ++     +  S+     N  R L
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD-----NEIRKL 57

Query: 129 DQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE 188
           D G   L  L+ L + +N +          +  L  L ++ N L       PL  L S+ 
Sbjct: 58  D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 189 KLYLSNNHFRIPISLEPLFNHSRLKIFYA 217
            L +  N    P++ +    H RL + Y 
Sbjct: 117 YLCILRN----PVTNKK---HYRLYVIYK 138

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 354 SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLM 412
           + + N    R LDL   ++   I E+L       +++  S+N ++       F  L  L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 413 SLQLEGNHFIGEISQSL-SKCSSLEGLFLNNNNLSG-KIPRWLGDLTRLQYIIMPNN 467
           +L +  N  I  I + L      L  L L NN+L        L  L  L Y+ +  N
Sbjct: 68  TLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRI 164
            +    + L L           +++    +L     +  +DN++R  L      +  L+ 
Sbjct: 16  TNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNEL 222
           L V+ N++   I       L  + +L L+NN       L+PL +   L       N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 17/138 (12%)

Query: 438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 497
           + L    +  +  +   +  R + + +    +   I      LD    +D SDN I    
Sbjct: 2   VKLTAELIE-QAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--- 55

Query: 498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG-KI 556
                KL G        L R++TL +++N +          L  +  L L+NN L     
Sbjct: 56  -----KLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 557 PHQLVELKTLEVFSVAYN 574
              L  LK+L    +  N
Sbjct: 106 LDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 283 LENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN 342
             N  + R+L L    +     L   +  +   +D S+N  R    L+   +L  L    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLT--GEIPEHLAVGCVNLESLVLSNNSLKGH 400
           ++ N +          +  L  L L+NN L   G++ + LA    +L  L +  N +   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 401 MFSRNFNLANLMSLQ 415
              R + +  +  ++
Sbjct: 129 KHYRLYVIYKVPQVR 143

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 22/108 (20%)

Query: 485 ILDISDNNISGR-----------LDLSCNKLIGPIPPKIGNL----TRIQTLNLSHNDLT 529
           ++ ++   I              LDL   K+     P I NL     +   ++ S N++ 
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEIR 55

Query: 530 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
             +   F  L+ +++L ++NN++          L  L    +  N+L 
Sbjct: 56  -KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDN 491
            ++  + L  N +    P       +L+ I + NN +   +  + F  L  L  L +  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGN 90

Query: 492 NISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSN 549
            I+             +P  +   L  +Q L L+ N +   +    F +L ++  L L +
Sbjct: 91  KITE------------LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137

Query: 550 NKLNGKIPH----QLVELKTLEVFS 570
           NKL   I       L  ++T+ +  
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 353 PSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFNLA 409
           P +F     LR +DLSNNQ++ E+      G  +L SLVL  N +      +F     L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG---LF 104

Query: 410 NLMSLQLEGNHFIGEI-SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN 467
           +L  L L  N  I  +   +     +L  L L +N L          L  +Q + +  N
Sbjct: 105 SLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 106 SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRI 164
               L+ + LSN+     +          L  L  L +  N +   LP      + SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR 198
           L ++ N++   +       L ++  L L +N  +
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLANLMSLQLEGN 419
             + L  N +   IP         L  + LSNN +       F     L +L SL L GN
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 420 HFIGEISQSL-SKCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNNHLEGPIPVEF 477
             I E+ +SL     SL+ L LN N ++  +       L  L  + + +N L+      F
Sbjct: 91  K-ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 478 CQLDLLQILDISDN 491
             L  +Q + ++ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 80  FKSLEHLDMSSTRIALNTSFLQIIGE----SMPSLKYLSLSNSTRGTNSSRILDQGL-CS 134
           F   + L     RI L+ + +  +       + SL  L L       N    L + L   
Sbjct: 52  FSPYKKL----RRIDLSNNQISELAPDAFQGLRSLNSLVLYG-----NKITELPKSLFEG 102

Query: 135 LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN 194
           L  LQ L +  N +         ++ +L +L +  N+L  +I+      L +I+ ++L+ 
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQ 161

Query: 195 NHF 197
           N F
Sbjct: 162 NPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 139 QELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR 198
            E+ +  N ++   P   +    LR + +S NQ++  ++      L S+  L L  N   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 199 IPISLEP-LFNH-SRLKIFYADNNEL 222
               L   LF     L++   + N++
Sbjct: 94  ---ELPKSLFEGLFSLQLLLLNANKI 116

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 53/288 (18%), Positives = 102/288 (35%), Gaps = 51/288 (17%)

Query: 307 IHSHKRLGMLDISNNNFRGHIPLEIGDILP----SLHVFNISMNALD----GSIPSSFGN 358
                 +  LD+S NN      +E+         S+   N+S N+L       +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 359 MNF-LRILDLSNNQLTGE----IPEHLAVGCVNLESLVLSNNSLK-------GHMFSRNF 406
           +   +  L+LS N L+ +    + + LA     +  L L  N             FS   
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 407 NLANLMSLQLEGNHF----IGEISQSLSKC-SSLEGLFLNNNNLSGKIPRWLGDL----- 456
             A++ SL L GN        E+ Q L+   +++  L L  NNL+ K    L        
Sbjct: 138 --ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 457 TRLQYIIMPNNHLEGPIPVEFCQL-----DLLQILDISDNNISGRLDLSCNKLIGPIPPK 511
             +  + +  N L      E   +     + +  L++  N +      S   L       
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH---GPSLENLKL----L 248

Query: 512 IGNLTRIQTLNLSHNDLTG-------SIPSTFSNLKHVESLDLSNNKL 552
             +L  +QT+ L ++ +         ++ + F N++ +  +D +  ++
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 52/288 (18%), Positives = 92/288 (31%), Gaps = 54/288 (18%)

Query: 336 PSLHVFNISMNALDGSIPSSFG-----NMNFLRILDLSNNQLTGE----IPEHLAVGCVN 386
             +   ++S+N L                  +  L+LS N L  +    + + LA    N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 387 LESLVLSNNSLK---GHMFSRNFNLAN--LMSLQLEGNHF----IGEISQSLSKC-SSLE 436
           + SL LS N L         +        +  L L  N F      E  Q+ S   +S+ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 437 GLFLNNNNLSGKIPRWLGDL-----TRLQYIIMPNNHLEGPIPVEFCQL---------DL 482
            L L  N+L  K    L  +       +  + +  N+L      + C             
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA----SKNCAELAKFLASIPAS 197

Query: 483 LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS----IPSTFSN 538
           +  LD+S N +      S  +L             + +LNL  N L G     +     +
Sbjct: 198 VTSLDLSANLLG---LKSYAELAYIFS---SIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 539 LKHVESLDLSNNKLNGKIPHQLVEL-------KTLEVFSVAYNNLSGE 579
           LKH++++ L  + +      Q   L       + + +       +   
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 44/332 (13%), Positives = 93/332 (28%), Gaps = 64/332 (19%)

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLM-HLQELYMADNDLRGSLPWCLANM---- 159
                +  L LS +   + S+  L Q   +    +  L ++ N L       L  +    
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 160 -TSLRILYVSYNQLTG----SISSSPLVHLTSIEKLYLSNNHFR----IPISLEPLFNHS 210
             ++  L +S N L+      +  +      +I  L L  N F                +
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 211 RLKIFYADNNELNAEITQ--SHSLTAPNFQLSRLSLSS-SYGDGFIFPKFLYHQHDLEYA 267
            +       N+L  + +      L A    ++ L+L   +                   A
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC-------------A 185

Query: 268 DLSHIKMNGEFPTWLLENNTKLRQLSLVN--------DSLAGPFRLPIHSHKRLGMLDIS 319
           +L+           L      +  L L            LA  F         +  L++ 
Sbjct: 186 ELAKF---------LASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNHVVSLNLC 233

Query: 320 NNNFRGHIPLEIGDIL---PSLHVFNISMNALDG-------SIPSSFGNMNFLRILDLSN 369
            N   G     +  +      L    +  + +         ++ ++F N+  + ++D + 
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 370 NQLTGE----IPEHLAVGCVNLESLVLSNNSL 397
            ++       I   +       +   L N  L
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 44/305 (14%), Positives = 83/305 (27%), Gaps = 59/305 (19%)

Query: 282 LLENNTKLRQLSLVN--------DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGD 333
           L      +  L+L          D L             + +LD+  N+F      E   
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLA---AIPFTITVLDLGWNDFSSKSSSEFKQ 131

Query: 334 IL----PSLHVFNISMNALDG----SIPSSFGNMNF-LRILDLSNNQLTGE----IPEHL 380
                  S+   N+  N L       +      +   +  L+L  N L  +    + + L
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 381 AVGCVNLESLVLSNNSLK-------GHMFSRNFNLANLMSLQLEGNHF----IGEISQSL 429
           A    ++ SL LS N L         ++FS   N  +++SL L  N      +  +    
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN--HVVSLNLCLNCLHGPSLENLKLLK 249

Query: 430 SKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 489
                L+ ++L+ + +          L                    F  +  + ++D +
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAA-----------------FPNIQKIILVDKN 292

Query: 490 DNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSI--PSTFSNLKHVESLDL 547
              I          +   I    G       LN                +    +     
Sbjct: 293 GKEIH---PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQ 349

Query: 548 SNNKL 552
           +   L
Sbjct: 350 TCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 26/215 (12%)

Query: 6   SLNTLYLLFNNFTDIATT--AQELHSF-TNLEYLSLDFSSLH----ISLLQSIASIFPSL 58
           ++  L L +N+F+  +++   Q   +   ++  L+L  + L       L+Q +A+I  ++
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 59  KNLSMSGCE-----VNGLVRGQGFPHFKSLEHLDMSSTRIALN--TSFLQIIGESMPSLK 111
            +L++ G          L +        S+  LD+S+  + L        I       + 
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIP-ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 112 YLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWC-------LANMTSLRI 164
            L+L  +     S   L     SL HLQ +Y+  + ++               N+  + +
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 165 LYVSYNQLTGS----ISSSPLVHLTSIEKLYLSNN 195
           +  +  ++  S    IS+         +   L N 
Sbjct: 289 VDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 16/154 (10%)

Query: 404 RNFNLANLMSLQLEGNHF-IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
           RN   A +  L L+      G+I    ++  +LE L L N  L   +   L  L +L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN 522
            +  N + G + +   +L  L  L++S N +     L            +  L  +++L+
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP----------LKKLECLKSLD 126

Query: 523 LSHN---DLTGSIPSTFSNLKHVESLDLSNNKLN 553
           L +    +L     S F  L  +  LD  + +  
Sbjct: 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 29  SFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDM 88
           +   +  L LD    +   ++ + + F +L+ LS+      GL+     P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN---VGLISVSNLPKLPKLKKLEL 78

Query: 89  SSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILD--QGLCSLMHLQELYMADN 146
           S  RI      L ++ E +P+L +L+LS      N  + +   + L  L  L+ L + + 
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSG-----NKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 147 ---DLRGSLPWCLANMTSLRIL 165
              +L          +  L  L
Sbjct: 131 EVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 100 LQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM 159
           L++   +  +++ L L N    +N  +I        ++L+ L + +  L  S+   L  +
Sbjct: 16  LELRNRTPAAVRELVLDN--CKSNDGKIEG-LTAEFVNLEFLSLINVGLI-SVS-NLPKL 70

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
             L+ L +S N++           L ++  L LS N  +   +LEPL     LK     N
Sbjct: 71  PKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 220 NEL 222
            E+
Sbjct: 130 CEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 80  FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQ 139
             ++  L + + +   N   ++ +     +L++LSL N          +   L  L  L+
Sbjct: 23  PAAVRELVLDNCKS--NDGKIEGLTAEFVNLEFLSLIN-----VGLISVS-NLPKLPKLK 74

Query: 140 ELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI 199
           +L +++N + G L      + +L  L +S N+L    +  PL  L  ++ L L N     
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC---- 130

Query: 200 PISLEPLFNHSRLKIFY 216
            ++        R  +F 
Sbjct: 131 EVTNLN---DYRESVFK 144

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKI 556
           LD   +   G I         ++ L+L +  L  S+ S    L  ++ L+LS N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 557 PHQLVELKTLEVFSVAYNNLS 577
                +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 8/134 (5%)

Query: 285 NNTKLRQLSLVNDSLAGPFRLPIHSH-KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNI 343
               +R+L L N          + +    L  L + N        +     LP L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 344 SMNALDGSIPSSFGNMNFLRILDLSNNQLT--GEIPEHLAVGCVNLESLVLSNNSLKGHM 401
           S N + G +      +  L  L+LS N+L     + E L      L+SL L N  +    
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNCEVTNLN 136

Query: 402 FSRNFNLANLMSLQ 415
             R      L  L 
Sbjct: 137 DYRESVFKLLPQLT 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 479 QLDLLQILDISDNNISGR------LDLSCNKL--IGPIPPKIGNLTRIQTLNLSHNDLTG 530
            LD  +  D     ++        L L    L  +  +P     L +++ L LS N + G
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFG 85

Query: 531 SIPSTFSNLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYN 574
            +      L ++  L+LS NKL        L +L+ L+   +   
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 2   GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNL 61
             F +L  L L+      ++     L     L+ L L  + +    L  +A   P+L +L
Sbjct: 46  AEFVNLEFLSLINVGLISVSN----LPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHL 100

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYL 113
           ++SG ++  +   +     + L+ LD+ +  +     + + + + +P L YL
Sbjct: 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 349 DGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL 408
           DG I         L  L L N  L   +  +L      L+ L LS N + G +      L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLP-KLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 409 ANLMSLQLEGNHFIGEIS--QSLSKCSSLEGLFLNNN 443
            NL  L L GN  + +IS  + L K   L+ L L N 
Sbjct: 95  PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC 130

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 21/145 (14%)

Query: 433 SSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 491
                L LNNN  +          L +L+ I   NN +       F     +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 492 NISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSN 549
            +              +  K+   L  ++TL L  N +T  + + +F  L  V  L L +
Sbjct: 92  RLEN------------VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 550 NKLNGKIPH----QLVELKTLEVFS 570
           N++   +       L  L TL + +
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           L ++NN F       I   LP L   N S N +      +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 376 IPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKC 432
           +   +  G  +L++L+L +N    +    F     L+++  L L  N        +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 433 SSLEGLFLNNN 443
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 108 PSLKYLSLSNSTRGTNSSRILDQG-LCSLMHLQELYMADNDLRGSLPW-CLANMTSLRIL 165
           P L+ ++ SN     N    +++G       + E+ +  N L  ++       + SL+ L
Sbjct: 57  PQLRKINFSN-----NKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL 110

Query: 166 YVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR 198
            +  N++T  + +   + L+S+  L L +N   
Sbjct: 111 MLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 48  LQSI-ASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIAL--NTSFLQIIG 104
           L  I   I      L ++  E   L     F     L  ++ S+ +I      +F     
Sbjct: 23  LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF----- 77

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLC-SLMHLQELYMADNDLRGSLPW-CLANMTSL 162
           E    +  + L++     N    +   +   L  L+ L +  N +   +       ++S+
Sbjct: 78  EGASGVNEILLTS-----NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSV 131

Query: 163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
           R+L +  NQ+T +++      L S+  L L  N F
Sbjct: 132 RLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 63/190 (33%)

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFI 422
             L L+NN+ T      +      L  +  SNN +                  +E   F 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT----------------DIEEGAF- 77

Query: 423 GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDL 482
               +  S    +  + L +N L     +    L  L+                      
Sbjct: 78  ----EGASG---VNEILLTSNRLENVQHKMFKGLESLKT--------------------- 109

Query: 483 LQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIP-STFSNLK 540
                         L L  N++   +       L+ ++ L+L  N +T ++    F  L 
Sbjct: 110 --------------LMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 541 HVESLDLSNN 550
            + +L+L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 13/91 (14%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
            L  L+++  ++N +           + +  + ++ N+L  ++       L S++ L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 194 NNHFRIPISLEP-LFNH-SRLKIFYADNNEL 222
           +N       +    F   S +++    +N++
Sbjct: 114 SNRIT---CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 496 RLDLSCNKLIGPIPPKIG--NLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
            L L+ N+    +        L +++ +N S+N +T      F     V  + L++N+L 
Sbjct: 36  ELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 554 GKIP----HQLVELKTLEVFSVAYNNLS 577
             +       L  LKTL    +  N ++
Sbjct: 95  N-VQHKMFKGLESLKTL---MLRSNRIT 118

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 16/147 (10%)

Query: 404 RNFNLANLMSLQLEGNHF-IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI 462
           RN   +++  L L+ +    G++     +   LE L   N  L+  I   L  L +L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLN 522
            + +N + G + V   +   L  L++S N I     +            +  L  +++L+
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP----------LKKLENLKSLD 119

Query: 523 LSHNDLTGSI---PSTFSNLKHVESLD 546
           L + ++T       + F  L  +  LD
Sbjct: 120 LFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 100 LQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM 159
           L++   +   +K L L N    +N  ++          L+ L   +  L  S+   L  +
Sbjct: 9   LELRNRTPSDVKELVLDN--SRSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
             L+ L +S N+++            ++  L LS N  +   ++EPL     LK     N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 220 NEL 222
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 13/120 (10%)

Query: 29  SFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDM 88
           + ++++ L LD S  +   L+ +   F  L+ LS       GL      P    L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 89  SSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQ--GLCSLMHLQELYMADN 146
           S  R+   +  L+++ E  P+L +L+LS      N  + L     L  L +L+ L + + 
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSG-----NKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 13/115 (11%)

Query: 103 IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL 162
           + +    L++LS  N          +   L  L  L++L ++DN + G L        +L
Sbjct: 37  LTDEFEELEFLSTIN-----VGLTSIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYA 217
             L +S N++    +  PL  L +++ L L N      ++        R  +F  
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EVTNLN---DYRENVFKL 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 479 QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN 538
           + + L+ L   +  ++    ++           +  L +++ L LS N ++G +      
Sbjct: 40  EFEELEFLSTINVGLT---SIAN----------LPKLNKLKKLELSDNRVSGGLEVLAEK 86

Query: 539 LKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYN 574
             ++  L+LS NK+        L +L+ L+   +   
Sbjct: 87  CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 497 LDLSCNKL-IGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
           L L  ++   G +         ++ L+  +  LT SI +    L  ++ L+LS+N+++G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 556 IPHQLVELKTLEVFSVAYNNLS 577
           +     +   L   +++ N + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 5/108 (4%)

Query: 309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLS 368
             + L  L   N        +     L  L    +S N + G +         L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 369 NNQLTG-EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ 415
            N++      E L     NL+SL L N  +      R      L  L 
Sbjct: 97  GNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 349 DGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL 408
           +G +         L  L   N  LT  I  +L      L+ L LS+N + G +       
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 409 ANLMSLQLEGNHFIGEISQ--SLSKCSSLEGLFLNNN 443
            NL  L L GN  I ++S    L K  +L+ L L N 
Sbjct: 88  PNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHIS-LLQSIASIFPSLKNL 61
            F  L  L  +    T IA     L     L+ L L  S   +S  L+ +A   P+L +L
Sbjct: 40  EFEELEFLSTINVGLTSIA----NLPKLNKLKKLEL--SDNRVSGGLEVLAEKCPNLTHL 93

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYL 113
           ++SG ++  L   +     ++L+ LD+ +  +     + + + + +P L YL
Sbjct: 94  NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 69/483 (14%), Positives = 138/483 (28%), Gaps = 134/483 (27%)

Query: 236 NFQLSRLSLSSSYGDGFIFPKFLYH-QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL 294
           +F+         Y D  I   F      + +  D+       + P  +L +  ++  + +
Sbjct: 8   DFETGEHQYQ--YKD--ILSVFEDAFVDNFDCKDVQ------DMPKSIL-SKEEIDHIIM 56

Query: 295 VNDSLAGPFRLPIHSHKRLGMLDISNNN----FRGHI----------PLEIGDILPSLH- 339
             D+++G  RL          L          F   +          P++     PS+  
Sbjct: 57  SKDAVSGTLRL-------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 340 -VFNISMNALDGSIPSSFGNMNFLR---ILDLSNNQLTGEIPE-----HLAVGC---VNL 387
            ++    + L       F   N  R    L L    L    P         +G      +
Sbjct: 110 RMYIEQRDRLYND-NQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTW-V 166

Query: 388 ESLVLSNNSLKGHMFSRNF--NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNL 445
              V  +  ++  M  + F  NL N  S +      + E+ Q L     ++  + + ++ 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-----VLEMLQKL--LYQIDPNWTSRSDH 219

Query: 446 SGKIPRWLGDL-TRLQYIIMPNNHLEGPIPVEFCQLDLLQILD-ISDNNISGRLDLSCNK 503
           S  I   +  +   L+ ++    +             LL +L  + +       +LSC  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC----------LL-VLLNVQNAKAWNAFNLSCKI 268

Query: 504 LIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 563
           L+          TR + +    + L+ +         H+     S           L   
Sbjct: 269 LL---------TTRFKQVT---DFLSAATT------THISLDHHSMT---------LTPD 301

Query: 564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNE 623
           +   +     +    ++P  E                L   P  +         + I  E
Sbjct: 302 EVKSLLLKYLDCRPQDLPR-EV---------------LTTNPRRL---------SIIA-E 335

Query: 624 RDDNLIDTNSFFITFTTSYVIVIFGIVI-VLYVNSYWRRRWFYFVEMWITSCYYFVVDNL 682
              + + T   +       +  I    + VL    Y R+    F  + +     F     
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RK---MFDRLSV-----FPPSAH 386

Query: 683 IPT 685
           IPT
Sbjct: 387 IPT 389

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 7e-09
 Identities = 77/448 (17%), Positives = 140/448 (31%), Gaps = 102/448 (22%)

Query: 25  QELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGL-----VRGQGFPH 79
           Q+L    +  + S    S +I L   I SI   L+ L  S    N L     V+     +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQ-----N 255

Query: 80  FKSLEHLDMSSTRIALNTSFLQII-GESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHL 138
            K+    ++S  +I L T F Q+    S  +  ++SL + +       +    L      
Sbjct: 256 AKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKY-- 310

Query: 139 QELYMADNDLR----GSLPWCLA---------NMTSLRILYVSYNQLTGSISSSPLVHLT 185
             L     DL      + P  L+           T     +V+ ++LT  I SS L  L 
Sbjct: 311 --LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLE 367

Query: 186 SIE--KLYLSNNHFR----IPISLEPLFNHSRLKIFYADNNELNAE-ITQSHSLTAPNFQ 238
             E  K++   + F     IP  L        L + + D  + +   +           +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTIL--------LSLIWFDVIKSDVMVVVN---------K 410

Query: 239 LSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS 298
           L + SL           +       +                  LE   KL     ++ S
Sbjct: 411 LHKYSLVEKQPK-----ESTISIPSI-----------------YLELKVKLENEYALHRS 448

Query: 299 LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGN 358
           +   + +P          D+       +    IG      H+ NI            F +
Sbjct: 449 IVDHYNIPKTFDSD----DLIPPYLDQYFYSHIGH-----HLKNIEHPERMTLFRMVFLD 499

Query: 359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEG 418
             FL        ++  +     A G  ++ + +      K ++   N      +   +  
Sbjct: 500 FRFLE------QKIRHDSTAWNASG--SILNTLQQLKFYKPYI-CDNDPKYERLVNAIL- 549

Query: 419 NHFIGEISQSL--SKCSSLEGLFLNNNN 444
             F+ +I ++L  SK + L  + L   +
Sbjct: 550 -DFLPKIEENLICSKYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 96/602 (15%), Positives = 175/602 (29%), Gaps = 174/602 (28%)

Query: 19  DIATTAQELHS----FTNLEYLSLDFSSLHISLLQSIASIFPS--LKNLSMSGCEVNGLV 72
           D  T   +           +    +F    +       SI     + ++ MS   V+G +
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 73  RGQGFPHFKSLEHLDMS------STRIALNTSFL------QIIGESMPSLKYLSLSNSTR 120
           R      F +L               + +N  FL      +    SM +  Y+   +   
Sbjct: 66  R-----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 121 GTNS-------SRI-----LDQGLCSLMHLQE--LY-MADNDLRGSLPWCLANMT--SLR 163
             N        SR+     L Q L  L   +   +  +      GS    +A     S +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-----GSGKTWVALDVCLSYK 175

Query: 164 ILYVSYNQ---LTGSISSSPLVHLTSIEKLY---------LSNNHFRIPISLEPLFNHSR 211
           +      +   L     +SP   L  ++KL           S++   I + +  +   + 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAE 233

Query: 212 LKIFYAD---NNEL-------NAEI-------------TQSHSLT--APNFQLSRLSLSS 246
           L+         N L       NA+              T+   +T        + +SL  
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 247 SYGDGF-------IFPKFLYHQHDLEYADLSH---------IKMNGE--------FPTWL 282
            +           +  K+L    D    DL           + +  E        +  W 
Sbjct: 294 -HSMTLTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 283 LENNTKLR---QLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRG--HIPLEIGDILPS 337
             N  KL    + SL  + L      P    K    L +    F    HIP  +  ++  
Sbjct: 349 HVNCDKLTTIIESSL--NVLE-----PAEYRKMFDRLSV----FPPSAHIPTILLSLIWF 397

Query: 338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPE-HLAVGCVNLESLVLSNNS 396
             + +  M  ++     S        +++    + T  IP  +L +         L  + 
Sbjct: 398 DVIKSDVMVVVNKLHKYS--------LVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 397 LKGHMFSRNFNLANLMSLQLEG--NHFIG----EISQSLSKCSSLEGLFLNNNNLSGKI- 449
           +  +   + F+  +L+   L+      IG     I     + +    +FL+   L  KI 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIR 508

Query: 450 ---PRW------LGDLTRL----QYIIMPNNHLEGPIP--VEFCQ-----------LDLL 483
                W      L  L +L     YI   +   E  +   ++F              DLL
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

Query: 484 QI 485
           +I
Sbjct: 569 RI 570

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 12/130 (9%)

Query: 105 ESMPSLKYLSLSNSTRGTNS-SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR 163
            ++ + K+L+LS      N+  +I    L  + +L+ L +  N ++  +    A   +L 
Sbjct: 45  STLKACKHLALST-----NNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 164 ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELN 223
            L++SYNQ+    S S +  L ++  LY+SNN       ++ L    +L+      N L 
Sbjct: 97  ELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 224 AEITQSHSLT 233
            +  ++++ +
Sbjct: 154 NDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 20/143 (13%)

Query: 79  HFKSLEHLDMSSTRIALNTSFLQIIG-ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMH 137
             K+ +HL +S+  I       +I     M +L+ LSL       N  + ++        
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR-----NLIKKIENLDAVADT 94

Query: 138 LQELYMADN---DLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN 194
           L+EL+++ N    L G     +  + +LR+LY+S N++T       L  L  +E L L+ 
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 195 NHFRIPISLEPLFNHSRLKIFYA 217
           N            +  R+++   
Sbjct: 150 NPLYNDYKENNATSEYRIEVVKR 172

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 18/155 (11%)

Query: 405 NFNLANLMSLQLEGNH-FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII 463
           +        ++L G    I ++  +LS   + + L L+ NN+  KI   L  +  L+ + 
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILS 76

Query: 464 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNL 523
           +  N ++  I       D L+ L IS N I+         L G     I  L  ++ L +
Sbjct: 77  LGRNLIKK-IENLDAVADTLEELWISYNQIA--------SLSG-----IEKLVNLRVLYM 122

Query: 524 SHNDLTG-SIPSTFSNLKHVESLDLSNNKLNGKIP 557
           S+N +T        + L  +E L L+ N L     
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 352 IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANL 411
           + ++   +   + L LS N +  +I   L+ G  NL  L L  N +K  + + +     L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG-KIPRWLGDLTRLQYIIMPNN 467
             L +  N  I  +S  + K  +L  L+++NN ++       L  L +L+ +++  N
Sbjct: 96  EELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
           +  +   L L  NN   I++    L    NL  LSL  +   I  ++++ ++  +L+ L 
Sbjct: 46  TLKACKHLALSTNNIEKISS----LSGMENLRILSLGRN--LIKKIENLDAVADTLEELW 99

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSN 117
           +S    N +    G     +L  L MS+ +I       ++   ++  L+ L L+ 
Sbjct: 100 ISY---NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL--AALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 497 LDLSCNKLIGPIPPKI---GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
           L LS N +      KI     +  ++ L+L  N +   I +  +    +E L +S N++ 
Sbjct: 53  LALSTNNI-----EKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106

Query: 554 GKIPHQLVELKTLEVFSVAYNNLS 577
             +   + +L  L V  ++ N ++
Sbjct: 107 -SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 37/134 (27%), Positives = 49/134 (36%), Gaps = 15/134 (11%)

Query: 335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394
           L +     +S N ++  I SS   M  LRIL L  N +  +I E+L      LE L +S 
Sbjct: 47  LKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI-ENLDAVADTLEELWISY 102

Query: 395 N---SLKGHMFSRNFNLANLMSLQLEGNHFIGEIS--QSLSKCSSLEGLFLNNNNLSGKI 449
           N   SL G        L NL  L +  N  I        L+    LE L L  N L    
Sbjct: 103 NQIASLSG--IE---KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 450 PRWLGDLTRLQYII 463
                       ++
Sbjct: 157 KENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 46/167 (27%)

Query: 10  LYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVN 69
           L+ +      +      L +    ++L+L                              N
Sbjct: 30  LHGMIPPIEKMD---ATLSTLKACKHLALST----------------------------N 58

Query: 70  GLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILD 129
            + +       ++L  L +    I      ++ +     +L+ L +S      N  +I  
Sbjct: 59  NIEKISSLSGMENLRILSLGRNLI----KKIENLDAVADTLEELWISY-----N--QIAS 107

Query: 130 -QGLCSLMHLQELYMADNDLR--GSLPWCLANMTSLRILYVSYNQLT 173
             G+  L++L+ LYM++N +   G +   LA +  L  L ++ N L 
Sbjct: 108 LSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY 153

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 496 RLDLSCNKLIGPIPPK-IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG 554
            L +   + +  +  + +  L  ++ L +  + L    P  F     +  L+LS N L  
Sbjct: 35  ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE- 93

Query: 555 KIPHQLVELKTLEVFSVAYNNL 576
            +  + V+  +L+   ++ N L
Sbjct: 94  SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 130 QGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE 188
             L    +L ELY+ +      L    L  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 189 KLYLSNNHFRIPISLEP-LFNHSRLKIFYADNNELN 223
           +L LS N      SL         L+      N L+
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFN 407
                      L  L + N Q    +      G   L +L +  + L+      F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNL 445
              L  L L  N  +  +S    +  SL+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 2/86 (2%)

Query: 494 SGRLDLSC-NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSNNK 551
            G   L C           +     +  L + +      +       L  + +L +  + 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 552 LNGKIPHQLVELKTLEVFSVAYNNLS 577
           L    P        L   ++++N L 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
           + L  L I N     H+ L     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 371 QLTGEIPEHLAVGCVNLESLVLSNNSL 397
            L   +      G ++L+ LVLS N L
Sbjct: 91  ALE-SLSWKTVQG-LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 106 SMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRIL 165
              +L  L + N     +   +  + L  L  L+ L +  + LR   P        L  L
Sbjct: 29  GAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 166 YVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR 198
            +S+N L  S+S   +  L S+++L LS N   
Sbjct: 86  NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 427 QSLSKCSSLEGLFLNNNNLSGKIPRW-LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI 485
             L    +L  L++ N      +    L  L  L+ + +  + L    P  F     L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT 529
           L++S N +              +  K      +Q L LS N L 
Sbjct: 85  LNLSFNALES------------LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 407 NLANLMSLQLEGNHFIGEI-SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465
              NL  L +E    +  +  + L     L  L +  + L    P       RL  + + 
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCN 502
            N LE  +  +  Q   LQ L +S N     L  SC 
Sbjct: 89  FNALES-LSWKTVQGLSLQELVLSGN----PLHCSCA 120

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 40/190 (21%)

Query: 10  LYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSI-ASIFPSLKNLSMSGCEV 68
           L L       ++         T L +L+LD++ L     Q++ A +F  L  L   G   
Sbjct: 40  LDLQSTGLATLSDAT--FRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLAN 92

Query: 69  NGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRIL 128
           N L          SL                   + + +  L  L L  +   +  S + 
Sbjct: 93  NQL---------ASLPLG----------------VFDHLTQLDKLYLGGNQLKSLPSGVF 127

Query: 129 DQGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRILYVSYNQLTGSISSSPLVHLTSI 187
           D     L  L+EL +  N L+ S+P      +T+L+ L +S NQL  S+       L  +
Sbjct: 128 D----RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181

Query: 188 EKLYLSNNHF 197
           + + L  N F
Sbjct: 182 QTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 24/153 (15%)

Query: 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495
           E L L +  L+         LT+L ++ +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 496 RLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLSNNKLN 553
                       +P  +  +LT++  L L  N L  S+PS  F  L  ++ L L+ N+L 
Sbjct: 98  ------------LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 554 GKIPH----QLVELKTLEVFSVAYNNLSGEIPE 582
             IP     +L  L+TL +      N    +P 
Sbjct: 145 -SIPAGAFDKLTNLQTLSL----STNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 27/174 (15%)

Query: 385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS-----KCSSLEGLF 439
            + E L L +  L     +    L  L  L L+ N       Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 440 LNNNNLSGKIPRWLGD-LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLD 498
           L NN L+  +P  + D LT+L  + +  N L+      F +L  L+            L 
Sbjct: 90  LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK-----------ELR 137

Query: 499 LSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNN 550
           L+ N+L   IP      LT +QTL+LS N L  S+P   F  L  ++++ L  N
Sbjct: 138 LNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 45/166 (27%), Positives = 64/166 (38%), Gaps = 23/166 (13%)

Query: 346 NALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMF 402
             L     ++F  +  L  L+L  NQL   +   +      L +L L+NN L      +F
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVF 103

Query: 403 SRNFNLANLMSLQLEGNHFIGEISQSLS-----KCSSLEGLFLNNNNLSGKIPRWLGD-L 456
                L  L  L L GN       +SL      + + L+ L LN N L   IP    D L
Sbjct: 104 DH---LTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 457 TRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCN 502
           T LQ + +  N L+      F +L  LQ + +  N      D S  
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ----FDCSRC 196

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 14/128 (10%)

Query: 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495
           + L+L++N ++   P     L  L+ + + +N L       F  L  L +LD+  N ++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 496 -------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV 542
                         L + CNKL   +P  I  LT +  L L  N L       F  L  +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 543 ESLDLSNN 550
               L  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 24/133 (18%)

Query: 346 NALDGSIPSSFGNMNFLRILDLSNNQLT---GEIPEHLAVGCVNLESLVLSNN---SLKG 399
           N +    P  F ++  L+ L L +NQL      + + L      L  L L  N    L  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTVLPS 105

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSL----SKCSSLEGLFLNNNNLSGKIPRWLGD 455
            +F R   L +L  L +  N         L     + + L  L L+ N L   IP    D
Sbjct: 106 AVFDR---LVHLKELFMCCNKL-----TELPRGIERLTHLTHLALDQNQLK-SIPHGAFD 156

Query: 456 -LTRLQYIIMPNN 467
            L+ L +  +  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
            L+HL+EL+M  N L   LP  +  +T L  L +  NQL  SI       L+S+   YL 
Sbjct: 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLF 167

Query: 194 NN 195
            N
Sbjct: 168 GN 169

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 47/308 (15%), Positives = 87/308 (28%), Gaps = 56/308 (18%)

Query: 268 DLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGP-------FRLPIHSHKRLGMLDISN 320
           D        +   +  E  + LRQL+L    +  P         L       L  +++++
Sbjct: 53  DHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRM-TPVKCTVVAAVL-GSGRHALDEVNLAS 110

Query: 321 NNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFG-----NMNFLRILDLSNNQLTGE 375
                     +  +        + +N+L              +   +  L LSNN LT  
Sbjct: 111 CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170

Query: 376 IPEHLAVG---CVNLESLVLSNNSLK-------GHMFSRNFNLANLMSLQLEGNHFIGE- 424
               L  G     ++  L L +  L             RN     L  L +  N      
Sbjct: 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN---RQLQELNVAYNGAGDTA 227

Query: 425 ---ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD-------LTRLQYIIMPNNHLEGPIP 474
              ++++  +  SLE L L  N LS +  + L D         R+   +     +     
Sbjct: 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS---- 283

Query: 475 VEFCQLDL---------LQILDISDNNISGRLDLSCNKLIGPIPPKIGNL----TRIQTL 521
            E+  + L              +  +      DL  ++     P +   L      ++ L
Sbjct: 284 -EYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRAL 342

Query: 522 NLSHNDLT 529
                   
Sbjct: 343 LEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 31/214 (14%), Positives = 62/214 (28%), Gaps = 49/214 (22%)

Query: 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK-------GHMFSRNFNLAN 410
             + L  ++L++ QL       L    +    L L  NSL          +     +   
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQ 156

Query: 411 LMSLQLEGNHFIGE-----ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465
           + +L+L  N  +       + + L+  +S+  L L +  L  +    L         +  
Sbjct: 157 ITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ------LDR 209

Query: 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSH 525
           N                LQ L+++ N      D +   L             ++ L+L  
Sbjct: 210 NRQ--------------LQELNVAYNGAG---DTAALALARAAREH----PSLELLHLYF 248

Query: 526 NDLT-------GSIPSTFSNLKHVESLDLSNNKL 552
           N+L+         +         V         +
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 25/240 (10%)

Query: 6   SLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIF----PSLKNL 61
            L+ L+     F +   +A+ L   ++L  L+L    +       +A++      +L  +
Sbjct: 51  LLDHLFFH-YEFQNQRFSAEVL---SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEV 106

Query: 62  SMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALN--TSFLQIIGESMPSLKYLSLSNST 119
           +++ C+++        P F     L +    +          ++      +  L LSN+ 
Sbjct: 107 NLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166

Query: 120 RGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM----TSLRILYVSYNQLTGS 175
                  +L +GL     +  L +    L       LA        L+ L V+YN    +
Sbjct: 167 LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226

Query: 176 ----ISSSPLVHLTSIEKLYLSNNHFR------IPISLEPLFNHSRLKIFYADNNELNAE 225
               ++ +      S+E L+L  N         +          +R+ +   +   ++  
Sbjct: 227 AALALARA-AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 47/211 (22%)

Query: 359 MNFLRILDLSNNQLTGE----IPEHLAVGCVNLESLVLSNNSL---KGHMFSRNFNLANL 411
           ++ LR L+L+  ++T      +   L  G   L+ + L++  L                 
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP--VFLRA 128

Query: 412 MSLQLEGNHFIGE-----ISQSL-SKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP 465
             L L+ N  +G      +   L      +  L L+NN L+      L +       +  
Sbjct: 129 RKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME------GLAG 181

Query: 466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSH 525
           N  +                L +    +    D    +L+      +    ++Q LN+++
Sbjct: 182 NTSVT--------------HLSLLHTGLG---DEGL-ELLAAQ---LDRNRQLQELNVAY 220

Query: 526 NDLTGS----IPSTFSNLKHVESLDLSNNKL 552
           N    +    +         +E L L  N+L
Sbjct: 221 NGAGDTAALALARAAREHPSLELLHLYFNEL 251

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 1e-06
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 17/146 (11%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
             P+L +L ++     D            NLE L L            +    P      
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK-- 248

Query: 63  MSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGT 122
                            F +L+ L +           + +  + +P L+ + +S      
Sbjct: 249 ---------------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 123 NSSRILDQGLCSLMHLQELYMADNDL 148
             +R+L   +  + HL+ + M  N L
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 23/170 (13%)

Query: 408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD-----LTRLQYI 462
           L  +  L          +S       +L+ L + +  L   +   +       L +L   
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 463 IMPNNHLEGPIPVEFCQL------DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLT 516
           +   ++        F  L        L+ L I D       ++     +     +   L 
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ---NVVVEMFL-----ESDILP 279

Query: 517 RIQTLNLSHNDLTGS----IPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 562
           +++T+++S   LT      +      +KH++ +++  N L+ ++  +L +
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 8e-05
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 10/167 (5%)

Query: 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ 479
               ++S  L     L  L +   N      +   +L  L+ II           +    
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE-IISGGLPDSVVEDILGSD 217

Query: 480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS---TF 536
           L  L+ L +         D   N               ++ L +   +    +       
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK--DRFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 537 SNLKHVESLDLSNNKLNGK----IPHQLVELKTLEVFSVAYNNLSGE 579
             L  +E++D+S   L  +    +   + ++K L+  ++ YN LS E
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 316 LDISNNNFRGHIPLEI------GDILPSLHVFNISMNALDGSIPSSFGN---MNFLRILD 366
           L +   ++     + +       D  P+L    I        +   F     +  L  +D
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 367 LSNNQLTGEIPEHLAVGC---VNLESLVLSNNSL 397
           +S   LT E    L        +L+ + +  N L
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 305 LPIHSHKRLGMLDISNNNFRGHIPLEIG--DILPSLHVFNISMNALDGS----IPSSFGN 358
                   L  L I +   +  +       DILP L   +IS   L       +      
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESL 390
           +  L+ +++  N L+ E+ + L         +
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 497
           L+L+ N  +  +P+ L +   L  I + NN +       F  +  L  L +S N      
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR----- 89

Query: 498 DLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNN 550
            L C      IPP+    L  ++ L+L  ND++  +P   F++L  +  L +  N
Sbjct: 90  -LRC------IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK---GHMFSRNFN 407
            +P    N   L ++DLSNN+++  +          L +L+LS N L+      F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 408 LANLMSLQLEGNHFIGEISQSL-----SKCSSLEGLFLNNN 443
           L +L  L L GN         +     +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGNDI-----SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK 555
            L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LS N+L   
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC- 92

Query: 556 IPH----QLVELKTLEVFSVAYNNLSGEIPE 582
           IP      L  L+ L +     N++S  +PE
Sbjct: 93  IPPRTFDGLKSLRLLSLHG---NDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 123 NSSRILDQGLCSLMHLQELYMADNDLRGSLP-WCLANMTSLRILYVSYNQLTGSISSSPL 181
           N   ++ + L +  HL  + +++N +  +L     +NMT L  L +SYN+L   I     
Sbjct: 41  NQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTF 98

Query: 182 VHLTSIEKLYLSNN 195
             L S+  L L  N
Sbjct: 99  DGLKSLRLLSLHGN 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 106 SMPSLKYLSLSNSTRGTNSSRILDQGLC-SLMHLQELYMADNDLRGSLPW-CLANMTSLR 163
           +   L  + LSN     N    L      ++  L  L ++ N LR  +P      + SLR
Sbjct: 52  NYKHLTLIDLSN-----NRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLR 105

Query: 164 ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNN 195
           +L +  N ++  +       L+++  L +  N
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 17/133 (12%)

Query: 433 SSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 492
           +    L L  N+L         +LT L  + +  N L+      F +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 493 ISG-------------RLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TFS 537
           +                L L+ N+L   +P  +   LT+++ L L  N L  S+P   F 
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145

Query: 538 NLKHVESLDLSNN 550
            L  ++ + L +N
Sbjct: 146 RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 19/143 (13%)

Query: 334 ILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS 393
           I       ++  N+L       F  +  L  L L  N+L   +P  +     +L  L LS
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 394 NN---SLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS-----KCSSLEGLFLNNNNL 445
            N   SL   +F +   L  L  L L  N       QSL      K + L+ L L  N L
Sbjct: 85  TNQLQSLPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 446 SGKIPRWLGD-LTRLQYIIMPNN 467
              +P  + D LT LQYI + +N
Sbjct: 137 KS-VPDGVFDRLTSLQYIWLHDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 438 LFLNNNNLSGKIPRWLGD-LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 496
           L LN+N L       L   L  L  + +  N L G  P  F     +Q            
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ-----------E 82

Query: 497 LDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNN 550
           L L  NK+   I  K+   L +++TLNL  N ++  +   +F +L  + SL+L++N
Sbjct: 83  LQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 18/114 (15%)

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLANLMSLQLEGN 419
             L L++N+L     + L     +L  L L  N L G   + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 420 HFIGEISQSLS-----KCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNN 467
                  + +S         L+ L L +N +S  +     + L  L  + + +N
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 496 RLDLSCNKLIGPIPPK--IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN 553
            L L+ N+ +G I      G L  +  L L  N LTG  P+ F    H++ L L  NK+ 
Sbjct: 33  ELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 554 GKIPH----QLVELKTLEVFSVAYNN 575
            +I +     L +LKTL +    Y+N
Sbjct: 92  -EISNKMFLGLHQLKTLNL----YDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 23/107 (21%)

Query: 484 QILDISDNNIS--------------GRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDL 528
             L ++DN +                +L+L  N+L G I P      + IQ L L  N +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 529 TGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVFS 570
              I +  F  L  +++L+L +N+++  +       L  L +L + S
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLAS 135

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 21/173 (12%)

Query: 55  FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIG--ESMPSLKY 112
              L ++       + +   QG  +  ++ +L        L  + L  I   + + +L Y
Sbjct: 37  QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-------LGGNKLHDISALKELTNLTY 89

Query: 113 LSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLP-WCLANMTSLRILYVSYNQ 171
           L L+ +   +  + + D+    L +L+EL + +N L+ SLP      +T+L  L +++NQ
Sbjct: 90  LILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 172 LTGSISSSPLVHLTSIEKLYLSNNHF-RIPISLEPLFNH-SRLKIFYADNNEL 222
           L  S+       LT++ +L LS N    +P   E +F+  ++LK      N+L
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYNQLQSLP---EGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 19/196 (9%)

Query: 3   SFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLS 62
           +   LN++  +  N +DI  + Q +    N+ YL+L  + L       I S    L NL+
Sbjct: 36  TQNELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKL-----HDI-SALKELTNLT 88

Query: 63  MSGCEVNGL--VRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
                 N L  +    F    +L+ L +   ++    S    + + + +L YL+L+++  
Sbjct: 89  YLILTGNQLQSLPNGVFDKLTNLKELVLVENQL---QSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 121 GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPW-CLANMTSLRILYVSYNQLTGSISSS 179
            +    + D     L +L EL ++ N L+ SLP      +T L+ L +  NQL  S+   
Sbjct: 146 QSLPKGVFD----KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDG 199

Query: 180 PLVHLTSIEKLYLSNN 195
               LTS++ ++L +N
Sbjct: 200 VFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 61/214 (28%)

Query: 365 LDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFN-LANLMSLQLEGNHFIG 423
            +L    +T  + ++      +++ ++ +N+ +K     +    L N+  L L GN    
Sbjct: 24  ANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL-- 75

Query: 424 EISQSLS---KCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNNHLEGPIPVEFCQ 479
                +S   + ++L  L L  N L   +P  + D LT L+                   
Sbjct: 76  ---HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE------------------ 113

Query: 480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN-LTRIQTLNLSHNDLTGSIPS-TFS 537
                            L L  N+L   +P  + + LT +  LNL+HN L  S+P   F 
Sbjct: 114 -----------------LVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFD 154

Query: 538 NLKHVESLDLSNNKLNGKIPH----QLVELKTLE 567
            L ++  LDLS N+L   +P     +L +LK L 
Sbjct: 155 KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR 187

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 108 PSLKYLSLSNSTR-GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM----TSL 162
           P L+ ++L+N       + +   + L +  ++++  +        + + LA M     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 163 RILYVSYNQLTG----SISSSPLVHLTSIEKLYLSNNHFRI 199
           + L V  N ++G    ++  + L   TS+ +L + N    +
Sbjct: 96  KSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPL 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 19/114 (16%)

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN---SLKGHMFSRNFNLANLMSLQLEGN 419
             L+L +N+L   +P  +      L  L LS N   SL   +F +   L  L  L L  N
Sbjct: 31  TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK---LTKLTILYLHEN 86

Query: 420 HFIGEISQSLS-----KCSSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNN 467
                  QSL      K + L+ L L+ N L   +P  + D LT LQ I +  N
Sbjct: 87  KL-----QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 19/122 (15%)

Query: 433 SSLEGLFLNNNNLSGKIPRWLGD-LTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISD 490
           SS   L L +N L   +P  + D LT+L  + +  N ++  P  V F +L  L       
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-FDKLTKLT------ 79

Query: 491 NNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDLTGSIPS-TFSNLKHVESLDLS 548
                 L L  NKL   +P  +   LT+++ L L  N L  S+P   F  L  ++ + L 
Sbjct: 80  -----ILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 132

Query: 549 NN 550
            N
Sbjct: 133 TN 134

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 100 LQIIGESMPSLKYLSLSNSTR-GTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLAN 158
           +  + E    LK ++++N  R      R L +  C+  H+++  +A+  +  S    L  
Sbjct: 33  INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92

Query: 159 M----TSLRILYVSYNQLTG----SISSSPLVHLTSIEKLYLSNNH 196
           +     SLR+L V  N LT      +  S  +   SI +    N  
Sbjct: 93  LIETSPSLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQR 137

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 12/101 (11%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 349 DGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN------NSLKGHMF 402
              +P+   +   ++ +D +++ +     +H+  G   +E + L          L+  + 
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLE-RLS 107

Query: 403 SRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNN 442
                  +++ +++     + +    +L    +L+ LFL++
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	689
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.49
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.5e-68  Score=605.14  Aligned_cols=591  Identities=32%  Similarity=0.448  Sum_probs=505.8

Q ss_pred             CCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchh--HHhhcCCCCcEEECCCCcCCcccCCCCCCC
Q 040699            2 GSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQ--SIASIFPSLKNLSMSGCEVNGLVRGQGFPH   79 (689)
Q Consensus         2 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~   79 (689)
                      .++++|+.++++.+.+.   .+++.|..+++|++|+|++|.+++....  .+.. +++|++|++++|.+.+..+...+.+
T Consensus        74 ~~L~~L~~l~~~~~~~~---~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~  149 (768)
T 3rgz_A           74 LSLTGLESLFLSNSHIN---GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLK  149 (768)
T ss_dssp             TTCTTCCEEECTTSCEE---ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCC
T ss_pred             hccCcccccCCcCCCcC---CCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhcc
Confidence            45677777777766543   3557789999999999999998865233  5666 9999999999999887766645588


Q ss_pred             CCCCCeeeCCCCccccCCccchhh--hhcCCCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccc
Q 040699           80 FKSLEHLDMSSTRIALNTSFLQII--GESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCL  156 (689)
Q Consensus        80 l~~L~~L~L~~~~~~~~~~~~~~~--~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  156 (689)
                      +++|++|++++|.+  .+..+...  ...+++|++|++++| ..+.    .   .+..+++|++|++++|.+++..|. +
T Consensus       150 l~~L~~L~Ls~n~l--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~---~~~~l~~L~~L~Ls~n~l~~~~~~-l  219 (768)
T 3rgz_A          150 LNSLEVLDLSANSI--SGANVVGWVLSDGCGELKHLAISGNKISGD----V---DVSRCVNLEFLDVSSNNFSTGIPF-L  219 (768)
T ss_dssp             CTTCSEEECCSSCC--EEETHHHHHHTTCCTTCCEEECCSSEEESC----C---BCTTCTTCCEEECCSSCCCSCCCB-C
T ss_pred             CCCCCEEECCCCcc--CCcCChhhhhhccCCCCCEEECCCCccccc----C---CcccCCcCCEEECcCCcCCCCCcc-c
Confidence            99999999999998  44444441  334899999999998 4333    2   347899999999999999977776 9


Q ss_pred             cCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCc
Q 040699          157 ANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN  236 (689)
Q Consensus       157 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  236 (689)
                      +.+++|++|++++|.+++.++. .+..+++|++|++++|.+.+..+..   .+++|+.|++++|.+.+.++.....  ..
T Consensus       220 ~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~--~~  293 (768)
T 3rgz_A          220 GDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSG--AC  293 (768)
T ss_dssp             TTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCT--TC
T ss_pred             ccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHh--hc
Confidence            9999999999999999876666 7899999999999999988655432   7889999999999988766654221  12


Q ss_pred             cccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCC-CcCE
Q 040699          237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHK-RLGM  315 (689)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~  315 (689)
                      ..|++|++ +.+...+..|..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+..++ +|++
T Consensus       294 ~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  372 (768)
T 3rgz_A          294 DTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT  372 (768)
T ss_dssp             TTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred             CcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence            47999999 777777788999999999999999999999889988778999999999999999888888887776 8999


Q ss_pred             EEccCCcCcccCChhhhhc-CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC
Q 040699          316 LDISNNNFRGHIPLEIGDI-LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN  394 (689)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  394 (689)
                      |++++|.+++.+|..+... +++|+.|++++|.+++..|..+.++++|++|++++|++++.+|..+. .+++|++|++++
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~  451 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWL  451 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCS
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCC
Confidence            9999999988777766432 57899999999999888899999999999999999999877776654 489999999999


Q ss_pred             CcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCc
Q 040699          395 NSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP  474 (689)
Q Consensus       395 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  474 (689)
                      |.+.+..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..|.++..+++|++|++++|++++..|
T Consensus       452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence            99998888889999999999999999998889999999999999999999998999999999999999999999998999


Q ss_pred             ccccCCCCCcEEecccccccc-----------------------------------------------------------
Q 040699          475 VEFCQLDLLQILDISDNNISG-----------------------------------------------------------  495 (689)
Q Consensus       475 ~~~~~l~~L~~L~l~~n~~~~-----------------------------------------------------------  495 (689)
                      ..+..+++|++|++++|++++                                                           
T Consensus       532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (768)
T 3rgz_A          532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN  611 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred             HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            999999999999999887641                                                           


Q ss_pred             ------------------------ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699          496 ------------------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       496 ------------------------~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  551 (689)
                                              .+|+++|++.|.+|..++++++|+.|+|++|++++.+|..++++++|++|||++|+
T Consensus       612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence                                    27899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCCCCCCCCCC
Q 040699          552 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATM  615 (689)
Q Consensus       552 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~  615 (689)
                      +++.+|..+..+++|+.|++++|+++|.+|+. .++.++....+.|||.+|+.|...|......
T Consensus       692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~  754 (768)
T 3rgz_A          692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNAD  754 (768)
T ss_dssp             CEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC--
T ss_pred             ccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCccC
Confidence            99999999999999999999999999999986 4788999999999999999988889765443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.9e-62  Score=555.33  Aligned_cols=578  Identities=29%  Similarity=0.398  Sum_probs=506.6

Q ss_pred             CCCCEEeCCCCCCCCccc---cchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCC-CCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIAT---TAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRG-QGFPHF   80 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~---~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l   80 (689)
                      .+++.|||+++.+.+  .   +++.+.++++|+.++++.+.+... .+.+.. +++|++|+|++|.+.+.++. ..++++
T Consensus        50 ~~v~~L~L~~~~l~g--~~~~l~~~l~~L~~L~~l~~~~~~~~~l-~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~l~~l  125 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNV--GFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSC  125 (768)
T ss_dssp             TEEEEEECTTSCCCE--EHHHHHHHTTTCTTCCEEECTTSCEEEC-CCCCCC-CTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred             CcEEEEECCCCCcCC--ccCccChhHhccCcccccCCcCCCcCCC-chhhcc-CCCCCEEECCCCcCCCcCCChHHHhCC
Confidence            357899999999987  5   788999999999999999876431 235555 89999999999999876653 268999


Q ss_pred             CCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccc---cCCCCCCCEEeCCCCcCccCCCcccc
Q 040699           81 KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQG---LCSLMHLQELYMADNDLRGSLPWCLA  157 (689)
Q Consensus        81 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~  157 (689)
                      ++|++|++++|.+  .+..+..+...+++|++|++++|....    .....   +.++++|++|++++|.+++..+  +.
T Consensus       126 ~~L~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~  197 (768)
T 3rgz_A          126 SGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISG----ANVVGWVLSDGCGELKHLAISGNKISGDVD--VS  197 (768)
T ss_dssp             TTCCEEECCSSEE--ECCSSCCSCCCCTTCSEEECCSSCCEE----ETHHHHHHTTCCTTCCEEECCSSEEESCCB--CT
T ss_pred             CCCCEEECcCCcc--CCcCCHHHhccCCCCCEEECCCCccCC----cCChhhhhhccCCCCCEEECCCCcccccCC--cc
Confidence            9999999999998  566666554459999999999994332    22223   7899999999999999986554  48


Q ss_pred             CCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCcc
Q 040699          158 NMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNF  237 (689)
Q Consensus       158 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  237 (689)
                      .+++|++|++++|.+++.++.  +..+++|++|++++|.+++..+ ..+.++++|+.|++++|.+.+..+..     ...
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~  269 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-----PLK  269 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-----CCT
T ss_pred             cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-----ccC
Confidence            899999999999999866665  8999999999999999885443 56889999999999999988765542     445


Q ss_pred             ccceEeecccCCCCCCCCccccCC-CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCC-CCCCCCcCE
Q 040699          238 QLSRLSLSSSYGDGFIFPKFLYHQ-HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLP-IHSHKRLGM  315 (689)
Q Consensus       238 ~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~  315 (689)
                      +|++|++ ..+...+.+|..+... ++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..+.. +..+++|++
T Consensus       270 ~L~~L~L-~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          270 SLQYLSL-AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             TCCEEEC-CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             CCCEEEC-cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            8999999 7777777888888765 99999999999999888887 589999999999999998766654 889999999


Q ss_pred             EEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccC--CCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699          316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGN--MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS  393 (689)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  393 (689)
                      |++++|.+++.+|..+....++|+.|++++|.+.+..|..+..  +++|++|++++|.+++.+|..+. .+++|++|+++
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls  426 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLS  426 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECC
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECc
Confidence            9999999998899888774459999999999998888887776  88999999999999977777665 49999999999


Q ss_pred             CCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCC
Q 040699          394 NNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPI  473 (689)
Q Consensus       394 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~  473 (689)
                      +|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|.++..+++|++|++++|++++..
T Consensus       427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCcEEeccccccccc-------------cccCCCcccCCCchhh----------------------------
Q 040699          474 PVEFCQLDLLQILDISDNNISGR-------------LDLSCNKLIGPIPPKI----------------------------  512 (689)
Q Consensus       474 ~~~~~~l~~L~~L~l~~n~~~~~-------------l~ls~n~l~~~~~~~~----------------------------  512 (689)
                      |..+..+++|++|++++|.+++.             +++++|++.|.+|..+                            
T Consensus       507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            99999999999999999999743             8999999988777643                            


Q ss_pred             ------------------------------------------ccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699          513 ------------------------------------------GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN  550 (689)
Q Consensus       513 ------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  550 (689)
                                                                ..+++|+.|++++|++++.+|..++++++|+.|+|++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                      33578999999999999999999999999999999999


Q ss_pred             cCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699          551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      ++++.+|..+..+++|+.||+++|++++.+|+.+..+..++.+++.+|+.....|
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            9999999999999999999999999999999999999999999999998765444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.1e-59  Score=526.58  Aligned_cols=606  Identities=20%  Similarity=0.203  Sum_probs=408.2

Q ss_pred             CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~   84 (689)
                      +++++|+|++|.+++  ..+..|.++++|++|++++|.++......+.. +++|++|++++|.+++. +...|+++++|+
T Consensus        25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQL-SDKTFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred             CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCcc-ChhhhccCCCCC
Confidence            467777777777776  34455777777777777777777653334555 77777777777777643 333577777777


Q ss_pred             eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCcccc--CCCCC
Q 040699           85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLA--NMTSL  162 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L  162 (689)
                      +|++++|.+  .+..+..+.. +++|++|++++|....    .+...+.++++|++|++++|.+++..+..+.  .+++|
T Consensus       101 ~L~L~~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A          101 ELHLMSNSI--QKIKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             EEECCSSCC--CCCCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             EEECCCCcc--CccChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            777777776  2222233333 7777777777773322    3333566777777777777777765555443  45677


Q ss_pred             cEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCc--ccccCCCCcceeeccCCcccccccccccCccCccccc
Q 040699          163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISL--EPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLS  240 (689)
Q Consensus       163 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  240 (689)
                      ++|++++|.++ .++...+..+++|+.|++.++.+......  ......++|+.|++++|.+.+..+.... .....+|+
T Consensus       174 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~  251 (680)
T 1ziw_A          174 KKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLT  251 (680)
T ss_dssp             SEEECTTCCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCC
T ss_pred             cEEECCCCccc-ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCC
Confidence            77777777776 34444677777777777777665421110  0011346778888888877665443321 11112478


Q ss_pred             eEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCC---------CCCCCCCCCC
Q 040699          241 RLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAG---------PFRLPIHSHK  311 (689)
Q Consensus       241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~  311 (689)
                      +|++ +.+...+..+..+..+++|+.|++++|.+.+..|.. +..+++|+.|+++++...+         +....+..++
T Consensus       252 ~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          252 MLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             EEEC-TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             EEEC-CCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            8887 666666666677777888888888888877665554 4677888888887654332         1223567778


Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCC--ccccccccCC--CCCcEEeccCCcccccchhhhhcCCCCC
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALD--GSIPSSFGNM--NFLRILDLSNNQLTGEIPEHLAVGCVNL  387 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L  387 (689)
                      +|++|++++|.+.+ ++...+..+++|+.|++++|.+.  ......|..+  ++|+.|++++|++. .++...+..+++|
T Consensus       330 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L  407 (680)
T 1ziw_A          330 CLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHL  407 (680)
T ss_dssp             TCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred             CCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eEChhhhhCCCCC
Confidence            88888888888874 44444555778888888887643  2222334332  57888888888887 4444555668888


Q ss_pred             CEEEccCCcCCcc-CcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC--CcCChhhcCCCCCcEEEc
Q 040699          388 ESLVLSNNSLKGH-MFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS--GKIPRWLGDLTRLQYIIM  464 (689)
Q Consensus       388 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~l  464 (689)
                      +.|++++|.+.+. ....+.++++|++|++++|++.+..+..|..+++|+.|++++|.+.  +..|..|..+++|++|++
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            8888888888653 3367778888888888888887777778888888888888888775  466778888888888888


Q ss_pred             CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699          465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES  544 (689)
Q Consensus       465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  544 (689)
                      ++|++++..+..|..+++|++|++++|.+++.   ....+.+..+..+.++++|++|++++|+++.+.+..|.++++|++
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARL---WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG---GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCcccc---chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            88888877777788888888888888887631   111111112234788999999999999999766678999999999


Q ss_pred             EeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc-cccccCcccccCCcCCCCCCC-C---------------
Q 040699          545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA-QFATFNENSYEGNTFLCGLPL-P---------------  607 (689)
Q Consensus       545 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~~~~~n~~~c~~~~-~---------------  607 (689)
                      |++++|++++..+..|..+++|+.|++++|.+++..|..+. .++.++.+++.+|||.|+|+. .               
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~  644 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE  644 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC------
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCccccc
Confidence            99999999988888888999999999999999988777666 688899999999999999974 2               


Q ss_pred             -----CCCCCCCCCcccCCCCCCCCccc
Q 040699          608 -----ICRSPATMSEASIGNERDDNLID  630 (689)
Q Consensus       608 -----~c~~~~~~~~~~~~~~~~~~~~~  630 (689)
                           .|..|+..+|.++.+++++.+++
T Consensus       645 ~~~~~~C~~p~~~~g~~l~~~~~~~~~~  672 (680)
T 1ziw_A          645 LSSHYLCNTPPHYHGFPVRLFDTSSCKD  672 (680)
T ss_dssp             ----------------------------
T ss_pred             ccCCcEECCchHHCCCcccccChhhcCC
Confidence                 47778777787777777766654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-55  Score=497.34  Aligned_cols=578  Identities=20%  Similarity=0.247  Sum_probs=464.0

Q ss_pred             CCCCCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCC
Q 040699            1 MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHF   80 (689)
Q Consensus         1 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l   80 (689)
                      |+++++|++|||++|.+++  ..+..|.++++|++|+|++|.++.....++.. +++|++|++++|.+.+..+ ..|+++
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l  120 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLNLQHNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKN-NPFVKQ  120 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCC--CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCS-CTTTTC
T ss_pred             HhCCCcCcEEECCCCccCc--cCHHHHhcccCcCEEECCCCccCccChhhhcc-CCCCCEEECCCCccCccCh-hHcccc
Confidence            4578999999999999998  56788999999999999999998753335666 9999999999999985543 479999


Q ss_pred             CCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCcccc--CCCCCCCEEeCCCCcCccCCCccccC
Q 040699           81 KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGL--CSLMHLQELYMADNDLRGSLPWCLAN  158 (689)
Q Consensus        81 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~  158 (689)
                      ++|++|++++|.+  .+..+..+.. +++|++|++++|....    +++..+  ..+++|++|++++|.+++..|..|..
T Consensus       121 ~~L~~L~Ls~n~l--~~~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  193 (680)
T 1ziw_A          121 KNLITLDLSHNGL--SSTKLGTQVQ-LENLQELLLSNNKIQA----LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA  193 (680)
T ss_dssp             TTCCEEECCSSCC--SCCCCCSSSC-CTTCCEEECCSSCCCC----BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred             CCCCEEECCCCcc--cccCchhhcc-cccCCEEEccCCcccc----cCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence            9999999999998  4444444444 9999999999984443    443343  36789999999999999888999999


Q ss_pred             CCCCcEEEccceeeeeecCccc--ccCCCCCCEEeccCCcceeecCcccccCCC--CcceeeccCCcccccccccccCcc
Q 040699          159 MTSLRILYVSYNQLTGSISSSP--LVHLTSIEKLYLSNNHFRIPISLEPLFNHS--RLKIFYADNNELNAEITQSHSLTA  234 (689)
Q Consensus       159 l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~  234 (689)
                      +++|+.|+++++.+.+......  ....++|+.|++++|.+.+..+ ..+..++  +|+.|++++|.+.+..+...   .
T Consensus       194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~---~  269 (680)
T 1ziw_A          194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSF---A  269 (680)
T ss_dssp             SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-TTTGGGGGSCCCEEECTTSCCCEECTTTT---T
T ss_pred             hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-hHhhccCcCCCCEEECCCCCcCccCcccc---c
Confidence            9999999998887753221100  0134789999999998875433 4555554  49999999998876554332   2


Q ss_pred             CccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCC-----CC---hHHHhcCCCCcEEEeeCCCCCCCCCCC
Q 040699          235 PNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGE-----FP---TWLLENNTKLRQLSLVNDSLAGPFRLP  306 (689)
Q Consensus       235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-----~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~  306 (689)
                      ...+|+.|++ ..+...+..|..+..+++|+.++++++...+.     +|   ...+..+++|++|++++|.+.+..+..
T Consensus       270 ~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~  348 (680)
T 1ziw_A          270 WLPQLEYFFL-EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM  348 (680)
T ss_dssp             TCTTCCEEEC-CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred             CcccccEeeC-CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence            2347889998 66777777888899999999999998755432     22   223678999999999999999988888


Q ss_pred             CCCCCCcCEEEccCCcCcc-cCChhhhhc--CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcC
Q 040699          307 IHSHKRLGMLDISNNNFRG-HIPLEIGDI--LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVG  383 (689)
Q Consensus       307 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  383 (689)
                      +.++++|++|++++|.+.. .++...+..  .++|+.|++++|.+.+..|.+|..+++|+.|++++|.+.+.++...+.+
T Consensus       349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  428 (680)
T 1ziw_A          349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG  428 (680)
T ss_dssp             TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred             hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence            9999999999999997542 333333322  2589999999999999889999999999999999999988888888888


Q ss_pred             CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccc--ccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcE
Q 040699          384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFI--GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQY  461 (689)
Q Consensus       384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  461 (689)
                      +++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+..+++|++|++++|.+++..+.+|.++++|++
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI  508 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence            999999999999999988999999999999999999886  567888999999999999999999888888999999999


Q ss_pred             EEcCCCccccCCc--------ccccCCCCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCcccccCC
Q 040699          462 IIMPNNHLEGPIP--------VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSI  532 (689)
Q Consensus       462 L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~  532 (689)
                      |++++|++++..+        ..|.++++|++|++++|.++            .+| ..|.++++|+.|++++|++++..
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~  576 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD------------EIPVEVFKDLFELKIIDLGLNNLNTLP  576 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC------------CCCHHHcccccCcceeECCCCCCCcCC
Confidence            9999999986422        23788999999999999887            344 56899999999999999999888


Q ss_pred             cccccCCCCCCEEeCcCCcCCCCCchhcc-CCCCCCEEeccCCcCcCCCC--CccccccccCccccc--CCcCCCCCCC
Q 040699          533 PSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLEVFSVAYNNLSGEIP--EWEAQFATFNENSYE--GNTFLCGLPL  606 (689)
Q Consensus       533 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~--~~~~~~~~~~~~~~~--~n~~~c~~~~  606 (689)
                      +..|.++++|++|++++|++++..|..+. .+++|+.+++++|++.|.++  .|+..+.......+.  .....|..|.
T Consensus       577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~  655 (680)
T 1ziw_A          577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP  655 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------------
T ss_pred             HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCch
Confidence            88899999999999999999998888887 78999999999999999987  455554333322222  2355787664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.5e-55  Score=486.96  Aligned_cols=563  Identities=19%  Similarity=0.198  Sum_probs=401.2

Q ss_pred             CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699            8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD   87 (689)
Q Consensus         8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~   87 (689)
                      +.+|.++..++.   +|..+.  +++++|++++|.++......+.. +++|++|++++|.+.+..+ ..|.++++|++|+
T Consensus        15 ~~~~c~~~~l~~---iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~   87 (606)
T 3t6q_A           15 KTYNCENLGLNE---IPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLV   87 (606)
T ss_dssp             TEEECTTSCCSS---CCTTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECT-TTTTTCTTCCEEE
T ss_pred             ceEECCCCCccc---CcCCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeCh-hhccCccccCeee
Confidence            467777776665   565554  47899999999888763335666 8899999999998876544 4788899999999


Q ss_pred             CCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEc
Q 040699           88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV  167 (689)
Q Consensus        88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  167 (689)
                      +++|.+  .+..+..+.. +++|++|++++|....    +.+..++++++|++|++++|.+++..+..+..+++|++|++
T Consensus        88 Ls~n~l--~~~~~~~~~~-l~~L~~L~L~~n~i~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  160 (606)
T 3t6q_A           88 LTANPL--IFMAETALSG-PKALKHLFFIQTGISS----IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF  160 (606)
T ss_dssp             CTTCCC--SEECTTTTSS-CTTCCEEECTTSCCSC----GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred             CCCCcc--cccChhhhcc-cccccEeeccccCccc----CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence            999988  3444444444 8899999999885444    54446888999999999999988755455555889999999


Q ss_pred             cceeeeeecCcccccCCCCCC--EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeec
Q 040699          168 SYNQLTGSISSSPLVHLTSIE--KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLS  245 (689)
Q Consensus       168 ~~n~l~~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~  245 (689)
                      ++|.++ .++...+..+++|+  .|++++|.++...+ . .....+|+.+++++|.........    .....+..+.+.
T Consensus       161 ~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~l~~l~~~  233 (606)
T 3t6q_A          161 QNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEP-G-AFDSAVFQSLNFGGTQNLLVIFKG----LKNSTIQSLWLG  233 (606)
T ss_dssp             CSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECT-T-TTTTCEEEEEECTTCSCHHHHHHH----TTTCEEEEEECC
T ss_pred             ccCccc-ccChhhhhhhcccceeEEecCCCccCccCh-h-HhhhccccccccCCchhHHHHhhh----ccccchhheech
Confidence            999888 45444788888888  88899988875332 2 234467888888877522111110    111122223220


Q ss_pred             ccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCC--CCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcC
Q 040699          246 SSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNF  323 (689)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  323 (689)
                                    .+..+...         .++...+..+.  +++.+++++|.+.++.+..+..+++|++|++++|.+
T Consensus       234 --------------~~~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  290 (606)
T 3t6q_A          234 --------------TFEDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL  290 (606)
T ss_dssp             --------------CCTTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred             --------------hhcccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence                          11111111         11111222222  677788888887777777777788888888888887


Q ss_pred             cccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccC--
Q 040699          324 RGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHM--  401 (689)
Q Consensus       324 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--  401 (689)
                      + .+|..+.. +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..  
T Consensus       291 ~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  368 (606)
T 3t6q_A          291 S-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC  368 (606)
T ss_dssp             S-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred             C-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc
Confidence            7 67765543 6788888888888877777777888888888888887777777776667888888888888877665  


Q ss_pred             cccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCCcccccCC
Q 040699          402 FSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPIPVEFCQL  480 (689)
Q Consensus       402 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  480 (689)
                      +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+
T Consensus       369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  448 (606)
T 3t6q_A          369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL  448 (606)
T ss_dssp             TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred             chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence            5567778888888888888777777778888888888888887775544 347778888888888888877777778888


Q ss_pred             CCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhc
Q 040699          481 DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL  560 (689)
Q Consensus       481 ~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  560 (689)
                      ++|++|++++|.+++.        .-..+..+..+++|++|++++|++++..|..|+++++|++|++++|++++..|+.+
T Consensus       449 ~~L~~L~L~~n~l~~~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  520 (606)
T 3t6q_A          449 PALQHLNLQGNHFPKG--------NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL  520 (606)
T ss_dssp             TTCCEEECTTCBCGGG--------EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred             CCCCEEECCCCCCCcc--------ccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence            8888888888876521        00123457777888888888888877777778888888888888888887777788


Q ss_pred             cCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCC-------------------CCCCCCCCCcccCC
Q 040699          561 VELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP-------------------ICRSPATMSEASIG  621 (689)
Q Consensus       561 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~-------------------~c~~~~~~~~~~~~  621 (689)
                      ..+++| .|++++|++++..|+.+..+..++.+++.+||+.|+|+..                   .|.+|+..+|.++.
T Consensus       521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~  599 (606)
T 3t6q_A          521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS  599 (606)
T ss_dssp             TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGG
T ss_pred             Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeee
Confidence            888888 8888888888777777777777788888888888877521                   58888888877766


Q ss_pred             CCCC
Q 040699          622 NERD  625 (689)
Q Consensus       622 ~~~~  625 (689)
                      +++.
T Consensus       600 ~~~~  603 (606)
T 3t6q_A          600 DVTL  603 (606)
T ss_dssp             GCCC
T ss_pred             eeec
Confidence            6543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-54  Score=497.40  Aligned_cols=567  Identities=20%  Similarity=0.215  Sum_probs=392.0

Q ss_pred             CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699            8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD   87 (689)
Q Consensus         8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~   87 (689)
                      +..|.++++++.   +|.   -.++|++|+|++|.++......+.. +++|++|++++|...+.++...|.++++|++|+
T Consensus         7 ~~~dcs~~~L~~---vP~---lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~   79 (844)
T 3j0a_A            7 RIAFYRFCNLTQ---VPQ---VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD   79 (844)
T ss_dssp             EEEEESCCCSSC---CCS---SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred             eEEEccCCCCCC---CCC---CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence            356677777766   454   3477888888888887653345555 888888888888666566555788888888888


Q ss_pred             CCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCc-cccCCCCCCCEEeCCCCcCccCCC-ccccCCCCCcE
Q 040699           88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILD-QGLCSLMHLQELYMADNDLRGSLP-WCLANMTSLRI  164 (689)
Q Consensus        88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  164 (689)
                      +++|.+  .+..+..+.. +++|++|+|++| ..+.    ++. ..+.++++|++|+|++|.+++..+ ..|+++++|++
T Consensus        80 Ls~N~l--~~~~p~~~~~-l~~L~~L~Ls~n~l~~~----~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           80 LGSSKI--YFLHPDAFQG-LFHLFELRLYFCGLSDA----VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             CTTCCC--CEECTTSSCS-CSSCCCEECTTCCCSSC----CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCCcC--cccCHhHccC-CcccCEeeCcCCCCCcc----cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            888887  3333444444 888888888887 3332    222 237788888888888888876544 56888888888


Q ss_pred             EEccceeeeeecCcccccCC--CCCCEEeccCCcceeecCcccccCCC------CcceeeccCCcccccccccccCccCc
Q 040699          165 LYVSYNQLTGSISSSPLVHL--TSIEKLYLSNNHFRIPISLEPLFNHS------RLKIFYADNNELNAEITQSHSLTAPN  236 (689)
Q Consensus       165 L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~~~~~~~~~~~~~~~~  236 (689)
                      |++++|.+++..+. .+..+  ++|+.|++++|.+....+. .+..+.      .|+.|++++|.+.+..+.........
T Consensus       153 L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          153 IDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             EEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             EECCCCcCCeeCHH-HcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            88888888744333 66666  7888888888887754332 222222      37888888887766554443333333


Q ss_pred             cccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhc--CCCCcEEEeeCCCCCCCCCCCCCCCCCcC
Q 040699          237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLEN--NTKLRQLSLVNDSLAGPFRLPIHSHKRLG  314 (689)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  314 (689)
                      ..+..+.+. ......               +...+.+.+..+. .+..  .++++.|++++|.+.+..+..+..+++|+
T Consensus       231 ~~l~~L~l~-~~~~~~---------------~~~~~~l~~~~~~-~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  293 (844)
T 3j0a_A          231 SQAFSLILA-HHIMGA---------------GFGFHNIKDPDQN-TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK  293 (844)
T ss_dssp             CCBSEEECC-SSCCBC---------------SSSCSSSTTGGGT-TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCC
T ss_pred             ccccceecc-cccccc---------------cccccccCCCChh-hhhccccCCccEEECCCCcccccChhhhhcCCCCC
Confidence            345555541 111000               0011111111111 1222  36788888888888877777788888888


Q ss_pred             EEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC
Q 040699          315 MLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN  394 (689)
Q Consensus       315 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  394 (689)
                      .|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|++|++++
T Consensus       294 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          294 VLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             EEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEET
T ss_pred             EEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCC
Confidence            88888888874434 34455788888888888888777788888888888888888886 66666677788888888888


Q ss_pred             CcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCC
Q 040699          395 NSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPI  473 (689)
Q Consensus       395 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~  473 (689)
                      |.+.+..     .+++|+.|++++|++... |.   ...+++.|++++|.+.+... ..+..+++|++|++++|++++..
T Consensus       372 N~l~~i~-----~~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  442 (844)
T 3j0a_A          372 NALTTIH-----FIPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS  442 (844)
T ss_dssp             CCSCCCS-----SCCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred             CCCCccc-----CCCCcchhccCCCCcccc-cc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence            8877533     377888888888887633 33   24578888888888875322 34567888888888888887544


Q ss_pred             cc-cccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcC
Q 040699          474 PV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL  552 (689)
Q Consensus       474 ~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  552 (689)
                      +. .+..+++|++|++++|.++..      .-.+..+..|.++++|++|+|++|++++.+|..|.++++|++|+|++|++
T Consensus       443 ~~~~~~~~~~L~~L~Ls~N~l~~~------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  516 (844)
T 3j0a_A          443 GDQTPSENPSLEQLFLGENMLQLA------WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL  516 (844)
T ss_dssp             SSSSSCSCTTCCBCEEESCCCSSS------CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred             cccccccCCccccccCCCCccccc------cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence            33 355678888888888877521      00124456677888888888888888888888888888888888888888


Q ss_pred             CCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCCC--------------------CCCCC
Q 040699          553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLP--------------------ICRSP  612 (689)
Q Consensus       553 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~--------------------~c~~~  612 (689)
                      ++..|..+.  ++|+.|++++|++++..|+.   +..+..+++.+||+.|+|+..                    .|.+|
T Consensus       517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          517 TVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             SSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             CccChhhhh--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCc
Confidence            877666655  78888888888888877764   346777788888888887642                    69999


Q ss_pred             CCCCcccCCCCCCCCcc
Q 040699          613 ATMSEASIGNERDDNLI  629 (689)
Q Consensus       613 ~~~~~~~~~~~~~~~~~  629 (689)
                      ....+.++.+.....|.
T Consensus       592 ~~~~g~~l~~~~~~~C~  608 (844)
T 3j0a_A          592 DSFSGVSLFSLSTEGCD  608 (844)
T ss_dssp             SSSCSCCTTTCCCCCC-
T ss_pred             hhhCCCccccCccccCC
Confidence            88888887777665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.1e-53  Score=470.25  Aligned_cols=573  Identities=19%  Similarity=0.201  Sum_probs=419.3

Q ss_pred             CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCee
Q 040699            7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL   86 (689)
Q Consensus         7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L   86 (689)
                      -++++.+++.++.   +|..+.  +++++|++++|.++......+.. +++|++|++++|.+++..+ ..|.++++|++|
T Consensus        13 ~~~~~c~~~~l~~---ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L   85 (606)
T 3vq2_A           13 NITYQCMDQKLSK---VPDDIP--SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIED-KAWHGLHHLSNL   85 (606)
T ss_dssp             TTEEECTTSCCSS---CCTTSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECT-TTTTTCTTCCEE
T ss_pred             CCceEccCCCccc---CCCCCC--CCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCH-HHhhchhhcCEe
Confidence            3578888888776   455444  78999999999988763336666 8999999999998886544 478889999999


Q ss_pred             eCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEE
Q 040699           87 DMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRIL  165 (689)
Q Consensus        87 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  165 (689)
                      ++++|.+  .+..+..+.. +++|++|++++|....    +++..++++++|++|++++|.+++ .+|..|+++++|++|
T Consensus        86 ~Ls~n~l--~~~~p~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           86 ILTGNPI--QSFSPGSFSG-LTSLENLVAVETKLAS----LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             ECTTCCC--CCCCTTSSTT-CTTCCEEECTTSCCCC----SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             ECCCCcc--cccChhhcCC-cccCCEEEccCCcccc----ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            9999988  4444555555 8999999999985444    554478899999999999999886 468889999999999


Q ss_pred             EccceeeeeecCcccccCCCCCC----EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccce
Q 040699          166 YVSYNQLTGSISSSPLVHLTSIE----KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR  241 (689)
Q Consensus       166 ~L~~n~l~~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  241 (689)
                      ++++|.+++ ++...+..+++|+    +|++++|.++. ++...+.. .+|+.|++++|.+.+.......  .....++.
T Consensus       159 ~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~  233 (606)
T 3vq2_A          159 DLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQG-IKLHELTLRGNFNSSNIMKTCL--QNLAGLHV  233 (606)
T ss_dssp             ECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTT-CEEEEEEEESCCSCHHHHHHHH--HTTTTCEE
T ss_pred             EccCCccee-cChhhhhhhhccccccceeeccCCCcce-eCcccccC-ceeeeeeccCCccchhHHHHHh--cccccccc
Confidence            999999884 4444666655544    89999998873 33333433 3899999999877542221111  11113333


Q ss_pred             EeecccC-----CCCCCCCccccCCC--CCCEEEc-cCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCc
Q 040699          242 LSLSSSY-----GDGFIFPKFLYHQH--DLEYADL-SHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL  313 (689)
Q Consensus       242 L~l~~~~-----~~~~~~~~~l~~~~--~L~~L~l-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  313 (689)
                      +.+....     ......+..+..+.  .++.+++ ..+.+.+..|.  +..+++|+.|+++++.+....  .+..+++|
T Consensus       234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L  309 (606)
T 3vq2_A          234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKW  309 (606)
T ss_dssp             EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCC
T ss_pred             ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccC
Confidence            3331100     01111111222222  4556666 66777777776  688999999999999987654  78889999


Q ss_pred             CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccc-hhhhhcCCCCCCEEEc
Q 040699          314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEI-PEHLAVGCVNLESLVL  392 (689)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l  392 (689)
                      ++|++++|.+. .+|. +  .+++|+.|++++|...+..  .+..+++|++|++++|.+++.. ....+..+++|++|++
T Consensus       310 ~~L~l~~n~l~-~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L  383 (606)
T 3vq2_A          310 QSLSIIRCQLK-QFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL  383 (606)
T ss_dssp             SEEEEESCCCS-SCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred             CEEEcccccCc-cccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence            99999999994 8884 3  5899999999999655333  6778999999999999998432 1334456999999999


Q ss_pred             cCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699          393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG  471 (689)
Q Consensus       393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  471 (689)
                      ++|.+.+.. ..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|++.+
T Consensus       384 ~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  462 (606)
T 3vq2_A          384 SFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD  462 (606)
T ss_dssp             CSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence            999988755 778889999999999999988777 688899999999999999998888999999999999999999987


Q ss_pred             -CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699          472 -PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN  550 (689)
Q Consensus       472 -~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  550 (689)
                       ..|..+..+++|++|++++|.+++           ..|..+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus       463 ~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          463 NTLSNVFANTTNLTFLDLSKCQLEQ-----------ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             cchHHhhccCCCCCEEECCCCcCCc-----------cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence             478889999999999999998763           66788999999999999999999888999999999999999999


Q ss_pred             cCCCCCchhccCCC-CCCEEeccCCcCcCCCCC-ccccccccCcccccCCcCCC-CCCCCCCCCCCCCCcccCCCCCCCC
Q 040699          551 KLNGKIPHQLVELK-TLEVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLC-GLPLPICRSPATMSEASIGNERDDN  627 (689)
Q Consensus       551 ~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c-~~~~~~c~~~~~~~~~~~~~~~~~~  627 (689)
                      +++ .+|..+..++ +|+.+++++|++.|.++. |+..+  +.     .++... +.....|..|...++.++.+++...
T Consensus       532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~--l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~  603 (606)
T 3vq2_A          532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW--VK-----EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST  603 (606)
T ss_dssp             CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTT--TT-----TSSSSBSSGGGCCCC-----------------
T ss_pred             cCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHH--HH-----cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence            998 5676688886 699999999999998874 22222  11     111111 1122378888888888888777654


Q ss_pred             c
Q 040699          628 L  628 (689)
Q Consensus       628 ~  628 (689)
                      |
T Consensus       604 c  604 (606)
T 3vq2_A          604 C  604 (606)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-52  Score=464.69  Aligned_cols=524  Identities=19%  Similarity=0.143  Sum_probs=422.1

Q ss_pred             CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~   84 (689)
                      +++++|||++|.+++  ..+..|.++++|++|+|++|.+.......+.. +++|++|++++|.+.+..+ ..|+++++|+
T Consensus        33 ~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  108 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAE-TALSGPKALK  108 (606)
T ss_dssp             TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECT-TTTSSCTTCC
T ss_pred             CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccCh-hhhccccccc
Confidence            479999999999998  55778999999999999999998763446666 9999999999999986655 4799999999


Q ss_pred             eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCc-
Q 040699           85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR-  163 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-  163 (689)
                      +|++++|.+  .+..+..+. .+++|++|++++|....    ++...+..+++|++|++++|.+++..+..|+.+++|+ 
T Consensus       109 ~L~L~~n~i--~~l~~~~~~-~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3t6q_A          109 HLFFIQTGI--SSIDFIPLH-NQKTLESLYLGSNHISS----IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN  181 (606)
T ss_dssp             EEECTTSCC--SCGGGSCCT-TCTTCCEEECCSSCCCC----CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred             EeeccccCc--ccCCcchhc-cCCcccEEECCCCcccc----cCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence            999999998  332233344 49999999999994443    3323566699999999999999988888999999999 


Q ss_pred             -EEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceE
Q 040699          164 -ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL  242 (689)
Q Consensus       164 -~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  242 (689)
                       .|++++|.+++ ++...+ ...+|+.|++++|....    ..+..+.+++...+....+...              ...
T Consensus       182 l~L~l~~n~l~~-~~~~~~-~~~~L~~L~l~~~~~~~----~~~~~l~~~~l~~l~~~~~~~~--------------~~~  241 (606)
T 3t6q_A          182 LSLNLNGNDIAG-IEPGAF-DSAVFQSLNFGGTQNLL----VIFKGLKNSTIQSLWLGTFEDM--------------DDE  241 (606)
T ss_dssp             EEEECTTCCCCE-ECTTTT-TTCEEEEEECTTCSCHH----HHHHHTTTCEEEEEECCCCTTS--------------CCC
T ss_pred             eEEecCCCccCc-cChhHh-hhccccccccCCchhHH----HHhhhccccchhheechhhccc--------------ccc
Confidence             99999999985 444344 44689999999986221    1233333333333322221110              000


Q ss_pred             eecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCc
Q 040699          243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNN  322 (689)
Q Consensus       243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  322 (689)
                      .      ........+.. .+++.+++++|.+.+..+ ..+..+++|++|++++|.++. .|..+..+++|++|++++|.
T Consensus       242 ~------i~~~~~~~l~~-~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          242 D------ISPAVFEGLCE-MSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             C------CCGGGGGGGGG-SEEEEEECTTCCCSSCCT-TTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCC
T ss_pred             c------cChhHhchhhc-CceeEEEeecCccCccCH-HHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCC
Confidence            0      00111111111 268889999998885444 446889999999999999885 56678889999999999999


Q ss_pred             CcccCChhhhhcCCCceEEEccCCcCCcccc-ccccCCCCCcEEeccCCcccccch--hhhhcCCCCCCEEEccCCcCCc
Q 040699          323 FRGHIPLEIGDILPSLHVFNISMNALDGSIP-SSFGNMNFLRILDLSNNQLTGEIP--EHLAVGCVNLESLVLSNNSLKG  399 (689)
Q Consensus       323 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~  399 (689)
                      +.+..| ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+. .++  ...+..+++|++|++++|.+.+
T Consensus       313 l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          313 FENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             CSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred             cCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCc
Confidence            984444 444558999999999999875544 45899999999999999998 443  3445669999999999999999


Q ss_pred             cCcccccCCCCccEEeccCCcccccccc-cccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc---CCcc
Q 040699          400 HMFSRNFNLANLMSLQLEGNHFIGEISQ-SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG---PIPV  475 (689)
Q Consensus       400 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~---~~~~  475 (689)
                      ..+..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+.++++|++|++++|++.+   ..+.
T Consensus       391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  470 (606)
T 3t6q_A          391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN  470 (606)
T ss_dssp             ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred             CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence            8889999999999999999999876554 48899999999999999998889999999999999999999986   2346


Q ss_pred             cccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCC
Q 040699          476 EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK  555 (689)
Q Consensus       476 ~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  555 (689)
                      .+..+++|++|++++|.+++           ..|..+..+++|++|++++|++++..|..+.+++.| +|++++|++++.
T Consensus       471 ~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          471 SLQTLGRLEILVLSFCDLSS-----------IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             GGGGCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             hhccCCCccEEECCCCccCc-----------cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence            78999999999999998873           667889999999999999999999999999999999 999999999999


Q ss_pred             CchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          556 IPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       556 ~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      .|..+..+++|+.+++++|++.|.++.
T Consensus       539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          539 LPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             CGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999999999999998873

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7e-52  Score=460.36  Aligned_cols=517  Identities=20%  Similarity=0.189  Sum_probs=425.6

Q ss_pred             CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~   84 (689)
                      +++++|+|++|.+++  ..+..|.++++|++|++++|.++......+.. +++|++|++++|.+++..+ ..|+++++|+
T Consensus        32 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~  107 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSP-GSFSGLTSLE  107 (606)
T ss_dssp             TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCT-TSSTTCTTCC
T ss_pred             CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccCh-hhcCCcccCC
Confidence            679999999999988  45668999999999999999998763335666 9999999999999986655 4799999999


Q ss_pred             eeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCc-
Q 040699           85 HLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLR-  163 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-  163 (689)
                      +|++++|.+  .+..+..+.. +++|++|++++|....  ..+|. .++++++|++|++++|.+++..+..|+.+++|+ 
T Consensus       108 ~L~L~~n~l--~~~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          108 NLVAVETKL--ASLESFPIGQ-LITLKKLNVAHNFIHS--CKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ  181 (606)
T ss_dssp             EEECTTSCC--CCSSSSCCTT-CTTCCEEECCSSCCCC--CCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred             EEEccCCcc--ccccccccCC-CCCCCEEeCCCCcccc--eechH-hHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence            999999998  3333344444 9999999999994321  01554 899999999999999999988888888777665 


Q ss_pred             ---EEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccccc-----ccccCccC
Q 040699          164 ---ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEIT-----QSHSLTAP  235 (689)
Q Consensus       164 ---~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~  235 (689)
                         +|++++|.++ .++...+... +|+.|++++|.+.+......+.+++.++.+.+..+.+.....     ........
T Consensus       182 ~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~  259 (606)
T 3vq2_A          182 VNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC  259 (606)
T ss_dssp             CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred             ccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence               8999999998 6676555555 899999999988754445567888889888876554432111     11111122


Q ss_pred             ccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCE
Q 040699          236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGM  315 (689)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  315 (689)
                      ...++.+.+.......+..|. +..+++|+.++++++.+. .+| . +..+++|++|++++|.+. ..+ .+ .+++|++
T Consensus       260 ~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~-l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~  332 (606)
T 3vq2_A          260 DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D-VPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKS  332 (606)
T ss_dssp             GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C-CCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCE
T ss_pred             hccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h-ccccccCCEEEcccccCc-ccc-cC-CCCccce
Confidence            336677777555566666666 788999999999999986 456 2 578899999999999994 455 45 8999999


Q ss_pred             EEccCCcCcccCChhhhhcCCCceEEEccCCcCCcc--ccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699          316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS--IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS  393 (689)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  393 (689)
                      |++++|...+.++   +..+++|+.|++++|.+.+.  .+..+..+++|++|++++|.+. .+| ..+.++++|++|+++
T Consensus       333 L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~  407 (606)
T 3vq2_A          333 LTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQ  407 (606)
T ss_dssp             EEEESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECT
T ss_pred             eeccCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECC
Confidence            9999996554442   23588999999999998865  3788999999999999999998 677 445569999999999


Q ss_pred             CCcCCccCc-ccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCC-cCChhhcCCCCCcEEEcCCCcccc
Q 040699          394 NNSLKGHMF-SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG-KIPRWLGDLTRLQYIIMPNNHLEG  471 (689)
Q Consensus       394 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~  471 (689)
                      +|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|++++
T Consensus       408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  487 (606)
T 3vq2_A          408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ  487 (606)
T ss_dssp             TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence            999998877 678899999999999999999899999999999999999999987 478899999999999999999999


Q ss_pred             CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC-CCCEEeCcCC
Q 040699          472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK-HVESLDLSNN  550 (689)
Q Consensus       472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N  550 (689)
                      ..|..|..+++|++|++++|++++           ..|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|
T Consensus       488 ~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          488 ISWGVFDTLHRLQLLNMSHNNLLF-----------LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSC-----------EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred             cChhhhcccccCCEEECCCCcCCC-----------cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence            999999999999999999998873           66889999999999999999999 5666688886 6999999999


Q ss_pred             cCCCCCc
Q 040699          551 KLNGKIP  557 (689)
Q Consensus       551 ~l~~~~~  557 (689)
                      ++....+
T Consensus       556 ~~~c~c~  562 (606)
T 3vq2_A          556 SVACICE  562 (606)
T ss_dssp             CCCCSST
T ss_pred             CcccCCc
Confidence            9986544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-50  Score=465.02  Aligned_cols=522  Identities=20%  Similarity=0.171  Sum_probs=416.8

Q ss_pred             CCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchh-HHhhcCCCCcEEECCCCcCCcccCCCCCCCCCC
Q 040699            4 FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQ-SIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKS   82 (689)
Q Consensus         4 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~   82 (689)
                      .+++++|||++|.+++  ..+..|.++++|++|+|++|.......+ .+.. +++|++|+|++|.+.+..+. .|.++++
T Consensus        23 p~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~~~p~-~~~~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYFLHPD-AFQGLFH   98 (844)
T ss_dssp             CTTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-CTTCCEEECTTCCCCEECTT-SSCSCSS
T ss_pred             CCCcCEEECCCCcCCc--cChhHCcccccCeEEeCCCCCCccccCHHHhcC-CCCCCEEECCCCcCcccCHh-HccCCcc
Confidence            4789999999999998  5678899999999999999966544223 4555 99999999999999866554 8999999


Q ss_pred             CCeeeCCCCccccCCccchh-hhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCC--
Q 040699           83 LEHLDMSSTRIALNTSFLQI-IGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANM--  159 (689)
Q Consensus        83 L~~L~L~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--  159 (689)
                      |++|++++|.+  .+..+.. ....+++|++|+|++|.....   .+...++++++|++|++++|.+++..+..+..+  
T Consensus        99 L~~L~Ls~n~l--~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~  173 (844)
T 3j0a_A           99 LFELRLYFCGL--SDAVLKDGYFRNLKALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG  173 (844)
T ss_dssp             CCCEECTTCCC--SSCCSTTCCCSSCSSCCEEEEESCCCCCC---CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred             cCEeeCcCCCC--CcccccCccccccCCCCEEECCCCccccc---ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence            99999999998  4544443 233499999999999944320   232478999999999999999998889998887  


Q ss_pred             CCCcEEEccceeeeeecCcccccCCCC------CCEEeccCCcceeecCccc--ccCCCCcceeeccCCccccccccccc
Q 040699          160 TSLRILYVSYNQLTGSISSSPLVHLTS------IEKLYLSNNHFRIPISLEP--LFNHSRLKIFYADNNELNAEITQSHS  231 (689)
Q Consensus       160 ~~L~~L~L~~n~l~~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~  231 (689)
                      ++|+.|++++|.+.+..+. .+..+.+      |+.|++++|.+....+...  ......++.+.+..+.......    
T Consensus       174 ~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~----  248 (844)
T 3j0a_A          174 KTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG----  248 (844)
T ss_dssp             CSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS----
T ss_pred             CccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc----
Confidence            8999999999999866655 4555554      9999999998775433221  2233567777777543322110    


Q ss_pred             CccCccccceEeecccCCCCCCCCccccC--CCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCC
Q 040699          232 LTAPNFQLSRLSLSSSYGDGFIFPKFLYH--QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHS  309 (689)
Q Consensus       232 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  309 (689)
                                     ........+..+..  .++++.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..|.+
T Consensus       249 ---------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~  312 (844)
T 3j0a_A          249 ---------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYG  312 (844)
T ss_dssp             ---------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred             ---------------ccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcC
Confidence                           01111111122222  368999999999998665554 588999999999999999988889999


Q ss_pred             CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699          310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES  389 (689)
Q Consensus       310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  389 (689)
                      +++|++|++++|.+++..+. .+..+++|+.|++++|.+....+..|.++++|+.|++++|.++ .++.     +++|+.
T Consensus       313 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~  385 (844)
T 3j0a_A          313 LDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPD  385 (844)
T ss_dssp             CSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSE
T ss_pred             CCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC-----CCCcch
Confidence            99999999999999844444 4555899999999999999888888999999999999999997 5543     789999


Q ss_pred             EEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCCh-hhcCCCCCcEEEcCCC
Q 040699          390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNN  467 (689)
Q Consensus       390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n  467 (689)
                      |++++|++.....    ...+++.|++++|++.+... ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|
T Consensus       386 L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N  461 (844)
T 3j0a_A          386 IFLSGNKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN  461 (844)
T ss_dssp             EEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred             hccCCCCcccccc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence            9999999986533    25689999999999876532 3456899999999999999865443 4566899999999999


Q ss_pred             ccc-----cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCC
Q 040699          468 HLE-----GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV  542 (689)
Q Consensus       468 ~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  542 (689)
                      .++     +..+..|..+++|++|++++|.+++           ..|..|.++++|+.|+|++|++++..+..+.  ++|
T Consensus       462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L  528 (844)
T 3j0a_A          462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-----------LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL  528 (844)
T ss_dssp             CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-----------CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred             ccccccccccchhhhcCcccccEEECCCCcccc-----------cChhHccchhhhheeECCCCCCCccChhhhh--ccc
Confidence            997     3445678899999999999998773           6777899999999999999999988777776  899


Q ss_pred             CEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          543 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       543 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      +.|++++|++++..|+.+   .+|+.+++++|++.|.++-
T Consensus       529 ~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          529 EILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             cEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            999999999999988775   4789999999999998873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=422.03  Aligned_cols=512  Identities=21%  Similarity=0.222  Sum_probs=390.6

Q ss_pred             CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCee
Q 040699            7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL   86 (689)
Q Consensus         7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L   86 (689)
                      .+.++-++..++.   +|..+.  +++++|++++|.++.....++.. +++|++|++++|.+++.. ...|.++++|++|
T Consensus         9 ~~~~~c~~~~l~~---ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L   81 (570)
T 2z63_A            9 NITYQCMELNFYK---IPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTL   81 (570)
T ss_dssp             TTEEECCSSCCSS---CCSSSC--SSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCCEEC-TTTTTTCTTCCEE
T ss_pred             CcEEEeCCCCccc---cCCCcc--ccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCCccC-cccccCchhCCEE
Confidence            3456676666655   454443  57999999999988764446666 899999999999988554 3478899999999


Q ss_pred             eCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEE
Q 040699           87 DMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRIL  165 (689)
Q Consensus        87 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  165 (689)
                      ++++|.+   ..++...+..+++|++|++++|....    ++...++++++|++|++++|.+++ ..|..|+++++|++|
T Consensus        82 ~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  154 (570)
T 2z63_A           82 ILTGNPI---QSLALGAFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (570)
T ss_dssp             ECTTCCC---CEECTTTTTTCTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             eCcCCcC---CccCHhhhcCcccccccccccccccc----CCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence            9999988   33433333348999999999985444    554468899999999999999886 368899999999999


Q ss_pred             EccceeeeeecCcccccCCCCC----CEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccce
Q 040699          166 YVSYNQLTGSISSSPLVHLTSI----EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR  241 (689)
Q Consensus       166 ~L~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  241 (689)
                      ++++|.++ .++...+..+++|    +.+++++|.++.. ....+... +|+.+++++|......               
T Consensus       155 ~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~-~~~~~~~~-~L~~L~l~~n~~~~~~---------------  216 (570)
T 2z63_A          155 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNFDSLNV---------------  216 (570)
T ss_dssp             ECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTC-EEEEEEEESCCSCTTH---------------
T ss_pred             eCcCCccc-eecHHHccchhccchhhhhcccCCCCceec-CHHHhccC-cceeEecccccccccc---------------
Confidence            99999998 4554467777777    8899999988743 33344443 7888888877432211               


Q ss_pred             EeecccCCCCCCCCccccCCCCCCEEEccCCcCc-----CCCChHHHhcCC--CCcEEEeeCC-CCCCCCCCCCCCCCCc
Q 040699          242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMN-----GEFPTWLLENNT--KLRQLSLVND-SLAGPFRLPIHSHKRL  313 (689)
Q Consensus       242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~~~~~~~L  313 (689)
                                  ++..+..++.++...+....+.     ..++...+..++  .++.+++..+ .+.+..+..+..+++|
T Consensus       217 ------------~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L  284 (570)
T 2z63_A          217 ------------MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV  284 (570)
T ss_dssp             ------------HHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred             ------------hhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence                        1111122222222211110000     011111122222  3556666666 5666667778888899


Q ss_pred             CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699          314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS  393 (689)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  393 (689)
                      ++|++++|.+. .+|..+.. + +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.   ..+++|++|+++
T Consensus       285 ~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~  355 (570)
T 2z63_A          285 SSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLS  355 (570)
T ss_dssp             SEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECC
T ss_pred             cEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCc
Confidence            99999999887 67776655 4 8999999999887 4443  4678899999999988755554   458899999999


Q ss_pred             CCcCCccC--cccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccc
Q 040699          394 NNSLKGHM--FSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLE  470 (689)
Q Consensus       394 ~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~  470 (689)
                      +|.+.+..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus       356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             CCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            99888654  56677899999999999998876555 8999999999999999986655 57889999999999999999


Q ss_pred             cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699          471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN  550 (689)
Q Consensus       471 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  550 (689)
                      +..|..+..+++|++|++++|.+++          +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQE----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccchhhhhcCCcCcEEECcCCcCcc----------ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            8899999999999999999998752          257788999999999999999999888999999999999999999


Q ss_pred             cCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      ++++..|..+..+++|+.|++++|+++|.+|.
T Consensus       505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99998888899999999999999999999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=408.12  Aligned_cols=500  Identities=20%  Similarity=0.229  Sum_probs=391.8

Q ss_pred             CCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCC
Q 040699            5 PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLE   84 (689)
Q Consensus         5 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~   84 (689)
                      +++++|||++|.+++  ..+..|.++++|++|++++|.++......+.. +++|++|++++|.+++..+ ..|.++++|+
T Consensus        28 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  103 (570)
T 2z63_A           28 FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLAL-GAFSGLSSLQ  103 (570)
T ss_dssp             SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECT-TTTTTCTTCC
T ss_pred             ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCCccCH-hhhcCccccc
Confidence            479999999999988  44667999999999999999998763345666 9999999999999986544 4799999999


Q ss_pred             eeeCCCCccccCCccch-hhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCC-
Q 040699           85 HLDMSSTRIALNTSFLQ-IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL-  162 (689)
Q Consensus        85 ~L~L~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-  162 (689)
                      +|++++|.+   ..++. .+.. +++|++|++++|....  ..+|. .++++++|++|++++|.+++..+..++.+++| 
T Consensus       104 ~L~L~~n~l---~~l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  176 (570)
T 2z63_A          104 KLVAVETNL---ASLENFPIGH-LKTLKELNVAHNLIQS--FKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  176 (570)
T ss_dssp             EEECTTSCC---CCSTTCSCTT-CTTCCEEECCSSCCCC--CCCCG-GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred             ccccccccc---ccCCCccccc-cccccEEecCCCccce--ecChh-hhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence            999999998   33333 3444 9999999999984322  01454 79999999999999999998888889888888 


Q ss_pred             ---cEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCcccc
Q 040699          163 ---RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL  239 (689)
Q Consensus       163 ---~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  239 (689)
                         +.|++++|.++ .++...+... +|+.|++++|..........+..+..++...+....+....           .+
T Consensus       177 ~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~-----------~l  243 (570)
T 2z63_A          177 LLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-----------NL  243 (570)
T ss_dssp             TCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS-----------SC
T ss_pred             hhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch-----------hh
Confidence               89999999998 4555466655 89999999885432222234555666665554432221100           01


Q ss_pred             ceEeecccCCCCCCCCccccCCCCCCEEEccCC-cCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEc
Q 040699          240 SRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHI-KMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDI  318 (689)
Q Consensus       240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  318 (689)
                      +.+.        ......+..+ .++.++++.+ .+.+..|.. +..+++|+.|+++++.+.+ .+..+..+ +|++|++
T Consensus       244 ~~~~--------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l  311 (570)
T 2z63_A          244 EKFD--------KSALEGLCNL-TIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLEL  311 (570)
T ss_dssp             EECC--------TTTTGGGGGS-EEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEE
T ss_pred             hhcc--------hhhhcccccc-chhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchh-hhhhhccC-CccEEee
Confidence            1100        0000111111 2456666666 555555554 5778999999999988885 45566777 9999999


Q ss_pred             cCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccch-hhhhcCCCCCCEEEccCCcC
Q 040699          319 SNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIP-EHLAVGCVNLESLVLSNNSL  397 (689)
Q Consensus       319 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l  397 (689)
                      ++|.+. .+|..   .+++|+.|++++|.+.+..+.  ..+++|++|++++|.+.+... ...+.++++|++|++++|.+
T Consensus       312 ~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l  385 (570)
T 2z63_A          312 VNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV  385 (570)
T ss_dssp             ESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred             ccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence            999998 77763   478999999999988765554  788999999999999874321 23445599999999999999


Q ss_pred             CccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccc-cCCcc
Q 040699          398 KGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE-GPIPV  475 (689)
Q Consensus       398 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~  475 (689)
                      .+.... +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|++. +..|.
T Consensus       386 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~  464 (570)
T 2z63_A          386 ITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  464 (570)
T ss_dssp             EEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh
Confidence            876665 8899999999999999887655 57889999999999999999888999999999999999999997 56888


Q ss_pred             cccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCC
Q 040699          476 EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK  555 (689)
Q Consensus       476 ~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  555 (689)
                      .+..+++|++|++++|.+++           ..|..+..+++|++|++++|++++..|..|.++++|++|++++|++++.
T Consensus       465 ~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          465 IFTELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhhcccCCCEEECCCCcccc-----------CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            99999999999999998873           6688899999999999999999998888999999999999999999976


Q ss_pred             Cch
Q 040699          556 IPH  558 (689)
Q Consensus       556 ~~~  558 (689)
                      .|.
T Consensus       534 ~~~  536 (570)
T 2z63_A          534 CPR  536 (570)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.6e-45  Score=399.41  Aligned_cols=488  Identities=17%  Similarity=0.177  Sum_probs=349.2

Q ss_pred             CCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCC
Q 040699           30 FTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPS  109 (689)
Q Consensus        30 ~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~  109 (689)
                      |+...+.+.+++.++..  |.  ...++|++|++++|.+++..+ ..|.++++|++|++++|.+  .+..+..+.. +++
T Consensus         4 C~~~~~c~~~~~~l~~i--p~--~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~-l~~   75 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSI--PS--GLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRI--NTIEGDAFYS-LGS   75 (549)
T ss_dssp             ECTTSEEECTTSCCSSC--CS--CCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCC--CEECTTTTTT-CTT
T ss_pred             CCCCceEECCCCccccc--cc--cCCCCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCc--CccChhhccc-ccc
Confidence            34445567777777653  32  113689999999999886554 3788999999999999988  3333344444 889


Q ss_pred             ccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEEEccceeeeeecCcccccCCCCCC
Q 040699          110 LKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIE  188 (689)
Q Consensus       110 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  188 (689)
                      |++|++++|....    +++..++++++|++|++++|.+++ ..|..|+.+++|++|++++|.+.+.++...+..+++|+
T Consensus        76 L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  151 (549)
T 2z81_A           76 LEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN  151 (549)
T ss_dssp             CCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCEEECCCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence            9999999885444    555568889999999999998886 35677888999999999988854577766788888999


Q ss_pred             EEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCcc-ccCCCCCCEE
Q 040699          189 KLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF-LYHQHDLEYA  267 (689)
Q Consensus       189 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L  267 (689)
                      +|++++|.+++..+ ..+..+++|+.|+++.|.+..                             +|.+ +..+++|+.|
T Consensus       152 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~-----------------------------~~~~~~~~l~~L~~L  201 (549)
T 2z81_A          152 ELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAF-----------------------------LLEIFADILSSVRYL  201 (549)
T ss_dssp             EEEEEETTCCEECT-TTTTTCSEEEEEEEECSBSTT-----------------------------HHHHHHHSTTTBSEE
T ss_pred             eeeccCCcccccCh-hhhhccccCceEecccCcccc-----------------------------cchhhHhhcccccEE
Confidence            99998888875433 556777888888877765421                             1111 2346788888


Q ss_pred             EccCCcCcCCC--ChHHHhcCCCCcEEEeeCCCCCCCCC----CCCCCCCCcCEEEccCCcCcccCC-----hhhhhcCC
Q 040699          268 DLSHIKMNGEF--PTWLLENNTKLRQLSLVNDSLAGPFR----LPIHSHKRLGMLDISNNNFRGHIP-----LEIGDILP  336 (689)
Q Consensus       268 ~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~~~~  336 (689)
                      ++++|.+.+..  +..+...+++|+.|+++++.+.+..+    ..+..+++|+.+++++|.+.+...     ......++
T Consensus       202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~  281 (549)
T 2z81_A          202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG  281 (549)
T ss_dssp             EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred             EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence            88888877532  22223456788888888887765322    223556788888888887653211     11123466


Q ss_pred             CceEEEccCCcCCcc-----ccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCc---ccccCC
Q 040699          337 SLHVFNISMNALDGS-----IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF---SRNFNL  408 (689)
Q Consensus       337 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l  408 (689)
                      +++.|++.++.+...     .+..+...++|+.|++++|.+. .+|..++.++++|++|++++|.+.+..+   ..+..+
T Consensus       282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l  360 (549)
T 2z81_A          282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW  360 (549)
T ss_dssp             TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred             ccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence            788888888766532     1222344567888888888886 7887777668888888888888876542   335678


Q ss_pred             CCccEEeccCCccccccc--ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEE
Q 040699          409 ANLMSLQLEGNHFIGEIS--QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL  486 (689)
Q Consensus       409 ~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  486 (689)
                      ++|++|++++|.+++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. |..+  .++|++|
T Consensus       361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L  436 (549)
T 2z81_A          361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVL  436 (549)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEE
T ss_pred             ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEE
Confidence            888888888888765532  45778888888888888887 5677777888888888888888743 3222  2578888


Q ss_pred             eccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 040699          487 DISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL  566 (689)
Q Consensus       487 ~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  566 (689)
                      ++++|++++            .   ...+++|++|++++|+++ .+|. ...+++|++|++++|++++..|+.+..+++|
T Consensus       437 ~Ls~N~l~~------------~---~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  499 (549)
T 2z81_A          437 DVSNNNLDS------------F---SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL  499 (549)
T ss_dssp             ECCSSCCSC------------C---CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred             ECCCCChhh------------h---cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCccc
Confidence            888887762            1   246778888888888888 4454 3567888888888888888888888888888


Q ss_pred             CEEeccCCcCcCCCC
Q 040699          567 EVFSVAYNNLSGEIP  581 (689)
Q Consensus       567 ~~L~l~~N~l~~~~~  581 (689)
                      +.|++++|++.|.+|
T Consensus       500 ~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          500 QKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CEEECCSSCBCCCHH
T ss_pred             CEEEecCCCccCCCc
Confidence            888888888888877

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.6e-45  Score=398.94  Aligned_cols=492  Identities=20%  Similarity=0.198  Sum_probs=387.2

Q ss_pred             CCCCCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCC
Q 040699            4 FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSL   83 (689)
Q Consensus         4 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L   83 (689)
                      |+...+.|.+++.++.   +|..+.  ++|++|++++|.++......+.. +++|++|++++|.+.+..+ ..|.++++|
T Consensus         4 C~~~~~c~~~~~~l~~---ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L   76 (549)
T 2z81_A            4 CDASGVCDGRSRSFTS---IPSGLT--AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEG-DAFYSLGSL   76 (549)
T ss_dssp             ECTTSEEECTTSCCSS---CCSCCC--TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred             CCCCceEECCCCcccc---ccccCC--CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccCh-hhccccccC
Confidence            5666778999998886   565443  79999999999998763345666 9999999999999986554 479999999


Q ss_pred             CeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCc-CccCCCccccCCCCC
Q 040699           84 EHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADND-LRGSLPWCLANMTSL  162 (689)
Q Consensus        84 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  162 (689)
                      ++|++++|.+  .+..+..+.. +++|++|++++|....  ...+. .++++++|++|++++|. +....+..|+.+++|
T Consensus        77 ~~L~Ls~n~l--~~~~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           77 EHLDLSDNHL--SSLSSSWFGP-LSSLKYLNLMGNPYQT--LGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             CEEECTTSCC--CSCCHHHHTT-CTTCCEEECTTCCCSS--SCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CEEECCCCcc--CccCHHHhcc-CCCCcEEECCCCcccc--cchhh-hhhccCCccEEECCCCccccccCHhhhhccccc
Confidence            9999999998  4444444554 9999999999994432  01333 68899999999999998 454445789999999


Q ss_pred             cEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceE
Q 040699          163 RILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL  242 (689)
Q Consensus       163 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  242 (689)
                      ++|++++|.+++..+. .+..+++|++|++++|.+.. .+...+..+++|+.|++++|.+.+.....             
T Consensus       151 ~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------  215 (549)
T 2z81_A          151 NELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSP-------------  215 (549)
T ss_dssp             EEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCC-------------
T ss_pred             CeeeccCCcccccChh-hhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccc-------------
Confidence            9999999999966666 79999999999999998752 22223456899999999999875431100             


Q ss_pred             eecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHH---HhcCCCCcEEEeeCCCCCCCCC------CCCCCCCCc
Q 040699          243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSLAGPFR------LPIHSHKRL  313 (689)
Q Consensus       243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~------~~~~~~~~L  313 (689)
                                  ......+++|+.|+++++.+.+..+..+   +..+++++.++++++.+.+...      ..+..++++
T Consensus       216 ------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L  283 (549)
T 2z81_A          216 ------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV  283 (549)
T ss_dssp             ------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred             ------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence                        0112345778899999988876555443   3467899999999988776422      235677899


Q ss_pred             CEEEccCCcCcccC----ChhhhhcCCCceEEEccCCcCCccccccc-cCCCCCcEEeccCCcccccchhh--hhcCCCC
Q 040699          314 GMLDISNNNFRGHI----PLEIGDILPSLHVFNISMNALDGSIPSSF-GNMNFLRILDLSNNQLTGEIPEH--LAVGCVN  386 (689)
Q Consensus       314 ~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~  386 (689)
                      +.|++.++.+....    -...+...++|+.|++++|.+.. +|..+ .++++|++|++++|++.+.+|..  .+..+++
T Consensus       284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~  362 (549)
T 2z81_A          284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS  362 (549)
T ss_dssp             CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred             ccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence            99999998765211    01123346789999999999984 55544 68999999999999998766643  2456899


Q ss_pred             CCEEEccCCcCCccCc--ccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEc
Q 040699          387 LESLVLSNNSLKGHMF--SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM  464 (689)
Q Consensus       387 L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  464 (689)
                      |++|++++|.+++...  ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+. .++..+  .++|++|++
T Consensus       363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~L  438 (549)
T 2z81_A          363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDV  438 (549)
T ss_dssp             CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEEC
T ss_pred             CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEEC
Confidence            9999999999987643  45788999999999999988 56778889999999999999998 344433  368999999


Q ss_pred             CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699          465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES  544 (689)
Q Consensus       465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  544 (689)
                      ++|++++..    ..+++|++|++++|+++            .+|. ...+++|++|++++|++++.+|..+..+++|++
T Consensus       439 s~N~l~~~~----~~l~~L~~L~Ls~N~l~------------~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  501 (549)
T 2z81_A          439 SNNNLDSFS----LFLPRLQELYISRNKLK------------TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK  501 (549)
T ss_dssp             CSSCCSCCC----CCCTTCCEEECCSSCCS------------SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred             CCCChhhhc----ccCChhcEEECCCCccC------------cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence            999998643    57899999999999887            5665 467899999999999999999999999999999


Q ss_pred             EeCcCCcCCCCCc
Q 040699          545 LDLSNNKLNGKIP  557 (689)
Q Consensus       545 L~L~~N~l~~~~~  557 (689)
                      |++++|++.+..|
T Consensus       502 L~l~~N~~~~~~~  514 (549)
T 2z81_A          502 IWLHTNPWDCSCP  514 (549)
T ss_dssp             EECCSSCBCCCHH
T ss_pred             EEecCCCccCCCc
Confidence            9999999998776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-44  Score=403.43  Aligned_cols=563  Identities=21%  Similarity=0.218  Sum_probs=378.5

Q ss_pred             ccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccch
Q 040699           22 TTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQ  101 (689)
Q Consensus        22 ~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  101 (689)
                      .+|..+-  +++++|+|++|+|+.....++.. +++|++|+|++|.++++. .+.|.++++|++|+|++|++   ..++.
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l---~~l~~  117 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI---QSLAL  117 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC---CEECG
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcC---CCCCH
Confidence            3565442  47899999999988753335666 899999999999887544 44788899999999999988   55666


Q ss_pred             hhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCcc-CCCccccCCCCCcEEEccceeeeeecCccc
Q 040699          102 IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG-SLPWCLANMTSLRILYVSYNQLTGSISSSP  180 (689)
Q Consensus       102 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  180 (689)
                      ..+.++++|++|+|++|....    +++..|+++++|++|++++|.++. ..|..++.+++|++|++++|+++ .++...
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~  192 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD  192 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGG
T ss_pred             HHhcCCCCCCEEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-cccccc
Confidence            555568999999999885544    666578899999999999998875 35778888999999999999988 444445


Q ss_pred             ccCCCC----CCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccC---CCCCC
Q 040699          181 LVHLTS----IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSY---GDGFI  253 (689)
Q Consensus       181 ~~~l~~----L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~  253 (689)
                      +..+.+    ...++++.|.+.. ++.. ......++.+++.+|..................+..+.+....   .....
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             ccchhhhhhhhhhhhcccCcccc-cCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            655443    3468888888763 2222 2333456677777765433222111111111122222221111   11111


Q ss_pred             CCccccCCCCCCEEEccCCcCcCCC--ChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhh
Q 040699          254 FPKFLYHQHDLEYADLSHIKMNGEF--PTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEI  331 (689)
Q Consensus       254 ~~~~l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  331 (689)
                      ....+.....+...++..+......  ....+....+++.+.+.++.+.....  +.....++.|++.+|.+. .++.. 
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~-~~~~~-  346 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFG-QFPTL-  346 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEES-SCCCC-
T ss_pred             cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhccccccc-CcCcc-
Confidence            2222333344444444332221110  01123556778888888777665433  445567888888888876 33332 


Q ss_pred             hhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccc--cchhhhhcCCCCCCEEEccCCcCCccCcccccCCC
Q 040699          332 GDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG--EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLA  409 (689)
Q Consensus       332 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  409 (689)
                        .++.|+.+++..|.....  ..+..+++|+.++++.|.+..  ..+... ..+.+|+.+++..+..... ...+..++
T Consensus       347 --~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~-~~~~~~l~  420 (635)
T 4g8a_A          347 --KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTISLKYLDLSFNGVITM-SSNFLGLE  420 (635)
T ss_dssp             --BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHH-HSCSCCCEEECCSCSEEEE-CSCCTTCT
T ss_pred             --cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccch-hhhhhhhhhhccccccccc-cccccccc
Confidence              256788888888876533  234567888888888887752  223333 3477888888888876553 34566788


Q ss_pred             CccEEeccCCcccccc-cccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcc-ccCCcccccCCCCCcEEe
Q 040699          410 NLMSLQLEGNHFIGEI-SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHL-EGPIPVEFCQLDLLQILD  487 (689)
Q Consensus       410 ~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~  487 (689)
                      +|+.+++.++...... ...+..+++++.++++.|.+.+..+..+.++++|+.|++++|.+ ....|..|..+++|++|+
T Consensus       421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~  500 (635)
T 4g8a_A          421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  500 (635)
T ss_dssp             TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence            8888888877765443 34677788888888888888877788888888888888888874 345677788888888888


Q ss_pred             ccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC-CCC
Q 040699          488 ISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTL  566 (689)
Q Consensus       488 l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L  566 (689)
                      +++|++++           ..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|+.+..+ ++|
T Consensus       501 Ls~N~L~~-----------l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L  569 (635)
T 4g8a_A          501 LSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  569 (635)
T ss_dssp             CTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred             CCCCccCC-----------cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence            88887763           567778888888888888888888888888888888888888888888888888877 678


Q ss_pred             CEEeccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCC
Q 040699          567 EVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERD  625 (689)
Q Consensus       567 ~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~  625 (689)
                      +.|++++||+.|.|.- |+..|..-..      ...-+.....|++|+..+|.++.+++.
T Consensus       570 ~~L~L~~Np~~C~C~~~~~~~wl~~~~------~~~~~~~~~~C~~P~~~~g~~l~~~~~  623 (635)
T 4g8a_A          570 AFLNLTQNDFACTCEHQSFLQWIKDQR------QLLVEVERMECATPSDKQGMPVLSLNI  623 (635)
T ss_dssp             CEEECTTCCBCCSGGGHHHHHHHHHTT------TTBSCGGGCBBCSSTTTTTCBGGGCCC
T ss_pred             CEEEeeCCCCcccCCcHHHHHHHHhCC------CccCCCCCceeCCchHHCCCEeeeecc
Confidence            8888888888887752 2222210000      011111223789999999988877753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-44  Score=392.91  Aligned_cols=459  Identities=17%  Similarity=0.168  Sum_probs=357.8

Q ss_pred             cEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCC
Q 040699           59 KNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHL  138 (689)
Q Consensus        59 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L  138 (689)
                      ++|++++|.++. +|. .+.  ++|++|++++|.+  .+..+..+.. +++|++|+|++|.+..    +.+..|+++++|
T Consensus         3 ~~l~ls~n~l~~-ip~-~~~--~~L~~L~Ls~n~i--~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L   71 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPK-DLS--QKTTILNISQNYI--SELWTSDILS-LSKLRILIISHNRIQY----LDISVFKFNQEL   71 (520)
T ss_dssp             CEEECTTSCCSS-CCC-SCC--TTCSEEECCSSCC--CCCCHHHHTT-CTTCCEEECCSSCCCE----EEGGGGTTCTTC
T ss_pred             ceEecCCCCccc-ccc-ccc--ccccEEECCCCcc--cccChhhccc-cccccEEecCCCccCC----cChHHhhcccCC
Confidence            589999999984 443 344  8999999999998  4444445554 9999999999985544    544589999999


Q ss_pred             CEEeCCCCcCccCCCccccCCCCCcEEEccceeeee-ecCcccccCCCCCCEEeccCCcceeecCcccccCCCCc--cee
Q 040699          139 QELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTG-SISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRL--KIF  215 (689)
Q Consensus       139 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~L  215 (689)
                      ++|+|++|.++ .+|..  .+++|++|++++|.+++ .+|. .++.+++|++|++++|.++.    ..+..+++|  +.|
T Consensus        72 ~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           72 EYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKV  143 (520)
T ss_dssp             CEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEE
T ss_pred             CEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEE
Confidence            99999999998 45554  78999999999999984 2444 78899999999999998874    345556666  888


Q ss_pred             eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCC-CCCEEEccCCcCcCCCChHHHhcCCCCcEEEe
Q 040699          216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQH-DLEYADLSHIKMNGEFPTWLLENNTKLRQLSL  294 (689)
Q Consensus       216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l  294 (689)
                      ++++|.+.+                          .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++
T Consensus       144 ~l~~n~l~~--------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l  197 (520)
T 2z7x_B          144 LLVLGETYG--------------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI  197 (520)
T ss_dssp             EEEECTTTT--------------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred             Eeecccccc--------------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence            888887621                          111222222222 22345677777777777666677888888888


Q ss_pred             eCCC-------CCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhh--cCCCceEEEccCCcCCccccccc-----cCCC
Q 040699          295 VNDS-------LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGD--ILPSLHVFNISMNALDGSIPSSF-----GNMN  360 (689)
Q Consensus       295 ~~~~-------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~-----~~l~  360 (689)
                      ++|.       +.+..+ .+..+++|+.|++++|.+.+..+.....  ..++|+.|++++|.+.+.+|..+     ..++
T Consensus       198 ~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~  276 (520)
T 2z7x_B          198 KCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK  276 (520)
T ss_dssp             EECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred             cccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence            8876       444333 5778889999999998887543332221  24689999999999988888888     8999


Q ss_pred             CCcEEeccCCcccccchhhhhcCC---CCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCE
Q 040699          361 FLRILDLSNNQLTGEIPEHLAVGC---VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG  437 (689)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  437 (689)
                      +|+.+++++|.+  .+|......+   .+|+.|++++|.+.....  ...+++|++|++++|.+.+..|..+..+++|++
T Consensus       277 ~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  352 (520)
T 2z7x_B          277 ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELET  352 (520)
T ss_dssp             EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred             eeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence            999999999998  5663222223   679999999999876432  257899999999999999888899999999999


Q ss_pred             EECCCCCCCC--cCChhhcCCCCCcEEEcCCCccccCCcc-cccCCCCCcEEeccccccccccccCCCcccCCCchhhcc
Q 040699          438 LFLNNNNLSG--KIPRWLGDLTRLQYIIMPNNHLEGPIPV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN  514 (689)
Q Consensus       438 L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~  514 (689)
                      |++++|.+.+  ..|..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++           ..|..+. 
T Consensus       353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~l~-  420 (520)
T 2z7x_B          353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-----------TIFRCLP-  420 (520)
T ss_dssp             EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-----------GGGGSCC-
T ss_pred             EEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-----------chhhhhc-
Confidence            9999999986  5567899999999999999999984444 58889999999999998763           4444443 


Q ss_pred             ccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       515 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                       ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.++
T Consensus       421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence             78999999999999 677777799999999999999996544458889999999999999999876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.5e-44  Score=395.96  Aligned_cols=304  Identities=20%  Similarity=0.267  Sum_probs=199.3

Q ss_pred             CccccCCCCCCEEEccCCc-CcC-CCChHHHhc------CCCCcEEEeeCCCCCCCCCC--CCCCCCCcCEEEccCCcCc
Q 040699          255 PKFLYHQHDLEYADLSHIK-MNG-EFPTWLLEN------NTKLRQLSLVNDSLAGPFRL--PIHSHKRLGMLDISNNNFR  324 (689)
Q Consensus       255 ~~~l~~~~~L~~L~l~~~~-l~~-~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~  324 (689)
                      |..+.++++|+.|++++|. +.+ .+|..+ ..      +++|++|++++|.++ ..|.  .+..+++|++|++++|.++
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence            3344455555555665555 554 455443 22      266666666666666 3444  5666666666666666666


Q ss_pred             ccCChhhhhcCCCceEEEccCCcCCccccccccCCCC-CcEEeccCCcccccchhhhhc-CCCCCCEEEccCCcCCccCc
Q 040699          325 GHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNF-LRILDLSNNQLTGEIPEHLAV-GCVNLESLVLSNNSLKGHMF  402 (689)
Q Consensus       325 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~  402 (689)
                      +.+| . +..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+.. .+++|++|++++|.+.+..+
T Consensus       344 g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          344 GKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             EECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             cchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence            6666 2 233566777777777666 55566666666 777777777766 66653322 12367777777777776666


Q ss_pred             cccc-------CCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCC-------CCcEEEcCCCc
Q 040699          403 SRNF-------NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT-------RLQYIIMPNNH  468 (689)
Q Consensus       403 ~~~~-------~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-------~L~~L~l~~n~  468 (689)
                      ..+.       .+++|++|++++|.+....+..+..+++|++|++++|.+....+..+....       +|++|++++|+
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence            6555       666777777777777755555566677777777777777733333333322       77788888887


Q ss_pred             cccCCccccc--CCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEec------cCcccccCCcccccCCC
Q 040699          469 LEGPIPVEFC--QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNL------SHNDLTGSIPSTFSNLK  540 (689)
Q Consensus       469 l~~~~~~~~~--~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~  540 (689)
                      ++ .+|..+.  .+++|++|++++|+++            .+|..+..+++|++|++      ++|++.+.+|..+..++
T Consensus       500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~------------~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          500 LT-KLSDDFRATTLPYLVGIDLSYNSFS------------KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             CC-BCCGGGSTTTCTTCCEEECCSSCCS------------SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CC-ccChhhhhccCCCcCEEECCCCCCC------------CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence            77 4556655  7778888877777765            36777777788888877      45667777788888888


Q ss_pred             CCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCC
Q 040699          541 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  580 (689)
Q Consensus       541 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  580 (689)
                      +|++|+|++|++ +.+|..+.  ++|+.|++++|++.+.-
T Consensus       567 ~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          567 SLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            888888888888 46666654  68888888888777543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.2e-42  Score=383.36  Aligned_cols=537  Identities=18%  Similarity=0.163  Sum_probs=399.7

Q ss_pred             CEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEE
Q 040699           34 EYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYL  113 (689)
Q Consensus        34 ~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L  113 (689)
                      ++.+-++-+++.  +|.  ...+++++|+|++|.+++. +...|.++++|++|+|++|.+   ..++...+.++++|++|
T Consensus        34 ~~~~c~~~~l~~--vP~--~lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L  105 (635)
T 4g8a_A           34 ITYQCMELNFYK--IPD--NLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTL  105 (635)
T ss_dssp             TEEECTTSCCSS--CCS--SSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEE
T ss_pred             CEEECCCCCcCc--cCC--CCCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEE
Confidence            344555545554  231  1124899999999999855 445899999999999999998   55666656669999999


Q ss_pred             ECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEecc
Q 040699          114 SLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS  193 (689)
Q Consensus       114 ~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  193 (689)
                      +|++|.+..    +++..|.++++|++|+|++|.+++..+..|+++++|++|++++|.+++.-....+..+++|++|+++
T Consensus       106 ~Ls~N~l~~----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          106 ILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             ECTTCCCCE----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             EccCCcCCC----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            999996555    7777899999999999999999987778899999999999999999743223367889999999999


Q ss_pred             CCcceeecCcccccCCCC----cceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEc
Q 040699          194 NNHFRIPISLEPLFNHSR----LKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADL  269 (689)
Q Consensus       194 ~n~l~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  269 (689)
                      +|.+++. ....+..+.+    ...++++.|.+....+..    .....+..+.+..........+..+..+..++...+
T Consensus       182 ~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~----~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l  256 (635)
T 4g8a_A          182 SNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL  256 (635)
T ss_dssp             SSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEE
T ss_pred             Ccccccc-ccccccchhhhhhhhhhhhcccCcccccCccc----ccchhhhhhhhhcccccccccchhhcCCcccccccc
Confidence            9998743 2233433332    346777888776543322    222244555552221111122334455666665554


Q ss_pred             cCCcCcC-----CCChHHHhcCCCCcEEEeeCCCCCC---CCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699          270 SHIKMNG-----EFPTWLLENNTKLRQLSLVNDSLAG---PFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF  341 (689)
Q Consensus       270 ~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  341 (689)
                      .......     ......+.....+....+..+....   .....+....+++.+++.++.+. .++.  +.....++.|
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~--~~~~~~L~~L  333 (635)
T 4g8a_A          257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKD--FSYNFGWQHL  333 (635)
T ss_dssp             EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGG--GGSCCCCSEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccc--cccchhhhhh
Confidence            3222110     1111113344555555554433222   12334566778899999998876 3333  2335689999


Q ss_pred             EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCcc--CcccccCCCCccEEeccCC
Q 040699          342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH--MFSRNFNLANLMSLQLEGN  419 (689)
Q Consensus       342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n  419 (689)
                      ++.+|.+....+   ..+..|+.++++.|... ..+..  ..+++|+.+++++|.+...  .+..+..+.+|+.+++..+
T Consensus       334 ~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~  407 (635)
T 4g8a_A          334 ELVNCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN  407 (635)
T ss_dssp             EEESCEESSCCC---CBCTTCCEEEEESCCSC-CBCCC--CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred             hcccccccCcCc---ccchhhhhcccccccCC-CCccc--ccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence            999998875443   34678899999998876 33322  2488999999999988643  3445567889999999999


Q ss_pred             cccccccccccCCCCCCEEECCCCCCCCcC-ChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccc
Q 040699          420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKI-PRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLD  498 (689)
Q Consensus       420 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~  498 (689)
                      .... .+..+..+++|+.++++.+...... +..+..+++++.+++++|.+.+..+..+..+++|++|++++|.+..   
T Consensus       408 ~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~---  483 (635)
T 4g8a_A          408 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---  483 (635)
T ss_dssp             SEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---
T ss_pred             cccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc---
Confidence            8764 4556888999999999988766443 3568889999999999999999999999999999999999997542   


Q ss_pred             cCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699          499 LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       499 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  578 (689)
                             +..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|+.|++++|++++
T Consensus       484 -------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          484 -------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             -------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             -------ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence                   2567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccc-cccCcccccCCcCCCCCCCC
Q 040699          579 EIPEWEAQF-ATFNENSYEGNTFLCGLPLP  607 (689)
Q Consensus       579 ~~~~~~~~~-~~~~~~~~~~n~~~c~~~~~  607 (689)
                      ..|+.+..+ .+++.+++.+|||.|+|...
T Consensus       557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          557 SKKQELQHFPSSLAFLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             CCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred             CCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence            999888776 67999999999999999753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=378.66  Aligned_cols=465  Identities=18%  Similarity=0.165  Sum_probs=327.1

Q ss_pred             CEEeCCCCCCCCccccchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699            8 NTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD   87 (689)
Q Consensus         8 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~   87 (689)
                      ++||+++|.++.   +|..+.  ++|++|++++|.++......+.. +++|++|++++|.+++..+. .|.++++|++|+
T Consensus         3 ~~l~ls~n~l~~---ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~   75 (520)
T 2z7x_B            3 FLVDRSKNGLIH---VPKDLS--QKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDIS-VFKFNQELEYLD   75 (520)
T ss_dssp             CEEECTTSCCSS---CCCSCC--TTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred             ceEecCCCCccc---cccccc--ccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence            589999999987   565554  89999999999998863346666 99999999999999866554 789999999999


Q ss_pred             CCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCC--cEE
Q 040699           88 MSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSL--RIL  165 (689)
Q Consensus        88 L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L  165 (689)
                      +++|.+   ..++..   .+++|++|++++|....  ..+|. .++++++|++|++++|.+++   ..+..+++|  +.|
T Consensus        76 Ls~N~l---~~lp~~---~l~~L~~L~L~~N~l~~--~~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           76 LSHNKL---VKISCH---PTVNLKHLDLSFNAFDA--LPICK-EFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV  143 (520)
T ss_dssp             CCSSCC---CEEECC---CCCCCSEEECCSSCCSS--CCCCG-GGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred             cCCCce---eecCcc---ccCCccEEeccCCcccc--ccchh-hhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence            999998   355554   48999999999984332  01343 78899999999999998875   457777777  999


Q ss_pred             Eccceee--eeecCcccccCCC-CCCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceE
Q 040699          166 YVSYNQL--TGSISSSPLVHLT-SIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRL  242 (689)
Q Consensus       166 ~L~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  242 (689)
                      ++++|.+  .+..+. .+..+. ....+++++|.+.+......+.++++|+.+++++|.......               
T Consensus       144 ~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---------------  207 (520)
T 2z7x_B          144 LLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS---------------  207 (520)
T ss_dssp             EEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH---------------
T ss_pred             Eeecccccccccccc-cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc---------------
Confidence            9999988  544444 455544 233667777877665555667778888888887764100000               


Q ss_pred             eecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHh--cCCCCcEEEeeCCCCCCCCCCCC-----CCCCCcCE
Q 040699          243 SLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLE--NNTKLRQLSLVNDSLAGPFRLPI-----HSHKRLGM  315 (689)
Q Consensus       243 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~  315 (689)
                            ...+.++ .+..+++|+.|+++++.+.+..+..+..  ..++|++|++++|.+.+..|..+     ..+++|+.
T Consensus       208 ------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~  280 (520)
T 2z7x_B          208 ------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI  280 (520)
T ss_dssp             ------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred             ------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence                  0000111 3445667777777776665433322211  23466666666666665555444     44555555


Q ss_pred             EEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCC---CCCcEEeccCCcccccchhhhhcCCCCCCEEEc
Q 040699          316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNM---NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL  392 (689)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  392 (689)
                      +++++|.+  .+|.                        ..+..+   .+|+.|++++|.+. .++.  ...+++|++|++
T Consensus       281 l~l~~n~~--~~p~------------------------~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L  331 (520)
T 2z7x_B          281 HQVVSDVF--GFPQ------------------------SYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFLHLDF  331 (520)
T ss_dssp             EEEEECCC--CSCT------------------------HHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEEC
T ss_pred             ccccccce--ecch------------------------hhhhcccccCceeEEEcCCCccc-cccc--hhhCCcccEEEe
Confidence            55555554  3331                        222211   34555555555544 2211  124667777777


Q ss_pred             cCCcCCccCcccccCCCCccEEeccCCcccc--cccccccCCCCCCEEECCCCCCCCcCCh-hhcCCCCCcEEEcCCCcc
Q 040699          393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIG--EISQSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHL  469 (689)
Q Consensus       393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n~l  469 (689)
                      ++|.+.+..+..+..+++|++|++++|++.+  ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++
T Consensus       332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence            7777776666677778888888888888775  4456788889999999999998874554 478889999999999998


Q ss_pred             ccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcC
Q 040699          470 EGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN  549 (689)
Q Consensus       470 ~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  549 (689)
                      ++..|..+.  ++|++|++++|.++            .+|..+..+++|++|++++|+++...+..+..+++|++|++++
T Consensus       412 ~~~~~~~l~--~~L~~L~Ls~N~l~------------~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          412 TDTIFRCLP--PRIKVLDLHSNKIK------------SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CGGGGGSCC--TTCCEEECCSSCCC------------CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             Ccchhhhhc--ccCCEEECCCCccc------------ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence            776665553  78999999999887            6788778999999999999999965555589999999999999


Q ss_pred             CcCCCCCc
Q 040699          550 NKLNGKIP  557 (689)
Q Consensus       550 N~l~~~~~  557 (689)
                      |++++..+
T Consensus       478 N~~~c~c~  485 (520)
T 2z7x_B          478 NPWDCSCP  485 (520)
T ss_dssp             SCBCCCHH
T ss_pred             CCCcccCC
Confidence            99987544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.9e-42  Score=386.39  Aligned_cols=400  Identities=17%  Similarity=0.238  Sum_probs=233.2

Q ss_pred             CCCCEEeCCC--CcCccCCCccccCCCCCcEEEccceeeee-----------------ecCccccc--CCCCCCEEeccC
Q 040699          136 MHLQELYMAD--NDLRGSLPWCLANMTSLRILYVSYNQLTG-----------------SISSSPLV--HLTSIEKLYLSN  194 (689)
Q Consensus       136 ~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~--~l~~L~~L~l~~  194 (689)
                      ..++.+.+..  |.+++ +|..|+++++|++|++++|.+++                 .+|. .+.  ++++|++|++++
T Consensus       423 l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEES
T ss_pred             cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcC
Confidence            3444444443  67776 67778888888888888888875                 2666 555  788888888888


Q ss_pred             CcceeecCcccccCCCCcceeeccCCc-ccc-cccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCC
Q 040699          195 NHFRIPISLEPLFNHSRLKIFYADNNE-LNA-EITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHI  272 (689)
Q Consensus       195 n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  272 (689)
                      |.+.+.++ ..+.++++|+.|++++|. +.+ .++....         .+            +..+..+++|+.|++++|
T Consensus       501 N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~---------~L------------~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          501 CPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWT---------RL------------ADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             CTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHH---------HH------------HHCTTTTTTCCEEECCSS
T ss_pred             CCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHH---------hh------------hhcccccCCccEEEeeCC
Confidence            87765555 556777777777777776 554 3322110         00            001224457777777777


Q ss_pred             cCcCCCCh-HHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC-ceEEEccCCcCCc
Q 040699          273 KMNGEFPT-WLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS-LHVFNISMNALDG  350 (689)
Q Consensus       273 ~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~  350 (689)
                      .+. .+|. ..+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.+. 
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-  632 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-  632 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-
Confidence            777 6665 22467777777777777776 344 6677777777777777776 66665444 455 777777777766 


Q ss_pred             cccccccCCCC--CcEEeccCCcccccchhhh---h-cCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc
Q 040699          351 SIPSSFGNMNF--LRILDLSNNQLTGEIPEHL---A-VGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE  424 (689)
Q Consensus       351 ~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  424 (689)
                      .+|..+..++.  |+.|++++|++.+.+|...   . ..+++|+.|++++|.+..+....+..+++|+.|++++|.+...
T Consensus       633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i  712 (876)
T 4ecn_A          633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI  712 (876)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred             cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence            45666655543  7777777777665443211   0 0133566666666666544443344555666666666655532


Q ss_pred             ccccccC-------CCCCCEEECCCCCCCCcCChhhc--CCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699          425 ISQSLSK-------CSSLEGLFLNNNNLSGKIPRWLG--DLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  495 (689)
Q Consensus       425 ~~~~~~~-------l~~L~~L~L~~n~i~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  495 (689)
                      .+..+..       +++|++|+|++|.+. .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++|+   
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---  787 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---  787 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB---
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC---
Confidence            2222221       225666666666665 4555554  56666666666666664 45555566666666666655   


Q ss_pred             ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCc
Q 040699          496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN  575 (689)
Q Consensus       496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  575 (689)
                        ++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+.....+..+.+.+|+
T Consensus       788 --~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          788 --DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             --CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             --CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence              4455555555555555555555555555555 24444433  355555555555554443443333333333444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.3e-41  Score=380.23  Aligned_cols=390  Identities=20%  Similarity=0.245  Sum_probs=312.3

Q ss_pred             CCcEEEccc--eeeeeecCcccccCCCCCCEEeccCCcceee-----------------cCccccc--CCCCcceeeccC
Q 040699          161 SLRILYVSY--NQLTGSISSSPLVHLTSIEKLYLSNNHFRIP-----------------ISLEPLF--NHSRLKIFYADN  219 (689)
Q Consensus       161 ~L~~L~L~~--n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~--~l~~L~~L~l~~  219 (689)
                      .++.+.+..  |.+++ +|. .+.++++|+.|++++|.+++.                 ++ ..+.  ++++|+.|++++
T Consensus       424 ~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          424 SLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEES
T ss_pred             chhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcC
Confidence            444444544  88986 888 799999999999999999862                 33 2233  666666666666


Q ss_pred             CcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCc-CcC-CCChHHH------hcCCCCcE
Q 040699          220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIK-MNG-EFPTWLL------ENNTKLRQ  291 (689)
Q Consensus       220 n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~-~~~~~~~------~~~~~L~~  291 (689)
                      |.+                            .+.+|..+..+++|+.|++++|. +.+ .+|..+.      ..+++|+.
T Consensus       501 N~l----------------------------~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~  552 (876)
T 4ecn_A          501 CPN----------------------------MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI  552 (876)
T ss_dssp             CTT----------------------------CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred             CCC----------------------------CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence            543                            44667788899999999999998 887 7787642      23459999


Q ss_pred             EEeeCCCCCCCCCC--CCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCC-CcEEecc
Q 040699          292 LSLVNDSLAGPFRL--PIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNF-LRILDLS  368 (689)
Q Consensus       292 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~  368 (689)
                      |++++|.+. ..|.  .+..+++|+.|++++|.++ .+|  .+..+++|+.|++++|.+. .+|..+..+++ |+.|+++
T Consensus       553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred             EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence            999999999 5666  7899999999999999998 888  3455889999999999998 78888999999 9999999


Q ss_pred             CCcccccchhhhhcCCC--CCCEEEccCCcCCccCccc---cc--CCCCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699          369 NNQLTGEIPEHLAVGCV--NLESLVLSNNSLKGHMFSR---NF--NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN  441 (689)
Q Consensus       369 ~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  441 (689)
                      +|.+. .+|..+. .++  +|+.|++++|.+.+..+..   +.  .+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus       628 ~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls  705 (876)
T 4ecn_A          628 HNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS  705 (876)
T ss_dssp             SSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECC
T ss_pred             CCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECC
Confidence            99998 8885443 243  4999999999998755432   22  45689999999999986555556689999999999


Q ss_pred             CCCCCCcCChh-hcC-------CCCCcEEEcCCCccccCCccccc--CCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699          442 NNNLSGKIPRW-LGD-------LTRLQYIIMPNNHLEGPIPVEFC--QLDLLQILDISDNNISGRLDLSCNKLIGPIPPK  511 (689)
Q Consensus       442 ~n~i~~~~~~~-l~~-------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~  511 (689)
                      +|.+. .+|.. +..       +++|+.|++++|+++ .+|..+.  .+++|+.|++++|.++            .+|..
T Consensus       706 ~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~------------~lp~~  771 (876)
T 4ecn_A          706 NNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS------------SFPTQ  771 (876)
T ss_dssp             SCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS------------SCCCG
T ss_pred             CCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC------------ccchh
Confidence            99998 45543 332       239999999999999 6777776  8999999999999887            47888


Q ss_pred             hccccccceEeccC------cccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699          512 IGNLTRIQTLNLSH------NDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA  585 (689)
Q Consensus       512 ~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  585 (689)
                      +..+++|+.|+|++      |++.+.+|..+.++++|++|+|++|++ +.+|..+.  ++|+.|++++|++....+..++
T Consensus       772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~  848 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC  848 (876)
T ss_dssp             GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred             hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence            99999999999976      788889999999999999999999999 57887765  6999999999999876666655


Q ss_pred             cccccCcccccCCcCCC--CCC
Q 040699          586 QFATFNENSYEGNTFLC--GLP  605 (689)
Q Consensus       586 ~~~~~~~~~~~~n~~~c--~~~  605 (689)
                      .........+.+|+..+  +|+
T Consensus       849 ~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          849 PYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             HHHHTTCCEEECCTTSEEESCG
T ss_pred             ccccchheeecCCCccccCCCC
Confidence            55555566667776554  654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-41  Score=370.23  Aligned_cols=463  Identities=17%  Similarity=0.181  Sum_probs=332.3

Q ss_pred             CCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCC
Q 040699           55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCS  134 (689)
Q Consensus        55 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~  134 (689)
                      +...+++++++|.+++ +|. .+.  ++|++|++++|.+  .+..+..+.. +++|++|+|++|.+..    +++..|.+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i--~~~~~~~~~~-l~~L~~L~Ls~N~l~~----~~~~~~~~   98 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSI--SELRMPDISF-LSELRVLRLSHNRIRS----LDFHVFLF   98 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCC--CCCCGGGTTT-CTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred             cCCCcEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCc--cccChhhhcc-CCCccEEECCCCCCCc----CCHHHhCC
Confidence            4556889999998885 443 233  7899999999988  3333344444 8888888888884444    54457888


Q ss_pred             CCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecC-cccccCCCCCCEEeccCCcceeecCcccccCCCCcc
Q 040699          135 LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSIS-SSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLK  213 (689)
Q Consensus       135 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  213 (689)
                      +++|++|+|++|.++ .+|..  .+++|++|++++|+++ .++ ...|.++++|++|++++|.++. .....+.++ +|+
T Consensus        99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~  172 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL-HLS  172 (562)
T ss_dssp             CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS-CEE
T ss_pred             CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc-eee
Confidence            888888888888888 44544  7888888888888887 443 2368888888888888888763 222333333 348


Q ss_pred             eeeccCCcc--cccccccccCccCccccceEeecccCCCCCCCCccccCCC-CCCEEEccCCcCcCCCChHHHhcCCCCc
Q 040699          214 IFYADNNEL--NAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQH-DLEYADLSHIKMNGEFPTWLLENNTKLR  290 (689)
Q Consensus       214 ~L~l~~n~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~  290 (689)
                      .|++++|.+  .+..+                            ..+..+. ..-.++++.|.+.+.++...+..+++|+
T Consensus       173 ~L~L~~n~l~~~~~~~----------------------------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  224 (562)
T 3a79_B          173 CILLDLVSYHIKGGET----------------------------ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ  224 (562)
T ss_dssp             EEEEEESSCCCCSSSC----------------------------CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred             EEEeecccccccccCc----------------------------ccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence            888888766  33222                            2222211 0113455666666555555455667777


Q ss_pred             EEEeeCCCCCC----CCCCCCCCCCCcCEEEccCCcCccc----CChhhhhcCCCceEEEccCCcCCccccccc-----c
Q 040699          291 QLSLVNDSLAG----PFRLPIHSHKRLGMLDISNNNFRGH----IPLEIGDILPSLHVFNISMNALDGSIPSSF-----G  357 (689)
Q Consensus       291 ~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~  357 (689)
                      .+++++|...-    .....+..+++|+.+++.++.+.+.    ++...  ..++|+.|++++|.+.+.+|..+     .
T Consensus       225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~  302 (562)
T 3a79_B          225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSET  302 (562)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred             EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccc
Confidence            77777764110    0112345567777777777766532    12222  23589999999999887777766     6


Q ss_pred             CCCCCcEEeccCCcccccchhhhhcC---CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCC
Q 040699          358 NMNFLRILDLSNNQLTGEIPEHLAVG---CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS  434 (689)
Q Consensus       358 ~l~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  434 (689)
                      .++.|+.++++.+.+  .+|......   ..+|++|++++|.+.....  ...+++|++|++++|.+.+..|..+..+++
T Consensus       303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  378 (562)
T 3a79_B          303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKR  378 (562)
T ss_dssp             SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred             cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCC
Confidence            677777777777776  455322211   3679999999998865432  257899999999999999888999999999


Q ss_pred             CCEEECCCCCCCCc--CChhhcCCCCCcEEEcCCCcccc-CCcccccCCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699          435 LEGLFLNNNNLSGK--IPRWLGDLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK  511 (689)
Q Consensus       435 L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~  511 (689)
                      |++|++++|.+.+.  .|..+..+++|++|++++|++++ ..+..+..+++|++|++++|.+++           ..|..
T Consensus       379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~  447 (562)
T 3a79_B          379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-----------SVFRC  447 (562)
T ss_dssp             CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-----------GGGSS
T ss_pred             CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-----------chhhh
Confidence            99999999999863  35678999999999999999998 444568899999999999998763           34443


Q ss_pred             hccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       512 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      +.  ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.++.
T Consensus       448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            33  68999999999999 5666666999999999999999955444488999999999999999998874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.9e-41  Score=374.20  Aligned_cols=450  Identities=18%  Similarity=0.252  Sum_probs=346.5

Q ss_pred             CCccEEECCCC-CCCCCCCccCccccCCCCCCCEEeCCCCcCc------c------CCCccccCCCCCcEEEccceeeee
Q 040699          108 PSLKYLSLSNS-TRGTNSSRILDQGLCSLMHLQELYMADNDLR------G------SLPWCLANMTSLRILYVSYNQLTG  174 (689)
Q Consensus       108 ~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~L~~n~l~~  174 (689)
                      .+++.|+|+++ ..+.    +++ .++++++|++|+|++|.+.      +      .+|...  +.+|+ ++++.+.+.+
T Consensus        81 ~~V~~L~L~~~~l~g~----lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~  152 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR----VPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDY  152 (636)
T ss_dssp             CCEEEEECTTSCCEEE----ECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCC
T ss_pred             CCEEEEEecCcccCCc----CCh-HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhcc
Confidence            36788888877 4455    664 7888888888888888652      1      112211  23444 5555554443


Q ss_pred             ecCccccc-------------------CCCCCCEEecc--CCcceeecCcccccCCCCcceeeccCCccccc-ccccccC
Q 040699          175 SISSSPLV-------------------HLTSIEKLYLS--NNHFRIPISLEPLFNHSRLKIFYADNNELNAE-ITQSHSL  232 (689)
Q Consensus       175 ~~~~~~~~-------------------~l~~L~~L~l~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~  232 (689)
                      ..+. .+.                   ....++.+.+.  .|.+++ ++ ..+.++++|+.|++++|.+.+. +...   
T Consensus       153 ~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~---  226 (636)
T 4eco_A          153 DPRE-DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEA---  226 (636)
T ss_dssp             CGGG-GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSS---
T ss_pred             Cchh-hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CC-HHHhcccCCCEEECcCCcccccccccc---
Confidence            3332 121                   11122223332  456665 44 3577788888888888877652 1110   


Q ss_pred             ccCccccceEeecccCCCCCCCCcccc--CCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCC-CCC-CCCCCCC
Q 040699          233 TAPNFQLSRLSLSSSYGDGFIFPKFLY--HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS-LAG-PFRLPIH  308 (689)
Q Consensus       233 ~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~  308 (689)
                      +.+.         ......+.+|..+.  ++++|+.|++++|.+.+.+|.. +..+++|++|++++|. +++ ..|..+.
T Consensus       227 ~~~~---------~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~  296 (636)
T 4eco_A          227 WENE---------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQ  296 (636)
T ss_dssp             CSCT---------TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred             cccc---------ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHH
Confidence            0000         00001112677777  8999999999999999999976 5899999999999998 887 6666555


Q ss_pred             CC------CCcCEEEccCCcCcccCCh--hhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhh
Q 040699          309 SH------KRLGMLDISNNNFRGHIPL--EIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHL  380 (689)
Q Consensus       309 ~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  380 (689)
                      .+      ++|++|++++|.++ .+|.  .+. .+++|+.|++++|.+.+.+| .|..+++|++|++++|++. .+|..+
T Consensus       297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l  372 (636)
T 4eco_A          297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF  372 (636)
T ss_dssp             HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS
T ss_pred             hhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh
Confidence            54      89999999999999 8887  444 48999999999999997888 8999999999999999998 888775


Q ss_pred             hcCCCC-CCEEEccCCcCCccCcccccCCC--CccEEeccCCccccccccccc-------CCCCCCEEECCCCCCCCcCC
Q 040699          381 AVGCVN-LESLVLSNNSLKGHMFSRNFNLA--NLMSLQLEGNHFIGEISQSLS-------KCSSLEGLFLNNNNLSGKIP  450 (689)
Q Consensus       381 ~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~  450 (689)
                      . .+++ |++|++++|.+.. .+..+...+  +|+.|++++|.+.+..|..+.       .+++|++|++++|.+....+
T Consensus       373 ~-~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          373 C-GFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK  450 (636)
T ss_dssp             E-EECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred             h-hhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence            5 4888 9999999999994 455665544  899999999999998888888       78899999999999995555


Q ss_pred             hhhcCCCCCcEEEcCCCccccCCcccccCCC-------CCcEEeccccccccccccCCCcccCCCchhhc--cccccceE
Q 040699          451 RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLD-------LLQILDISDNNISGRLDLSCNKLIGPIPPKIG--NLTRIQTL  521 (689)
Q Consensus       451 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~--~l~~L~~L  521 (689)
                      ..+..+++|++|++++|+++...+..+....       +|++|++++|.++            .+|..+.  .+++|+.|
T Consensus       451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~~~l~~L~~L  518 (636)
T 4eco_A          451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT------------KLSDDFRATTLPYLVGI  518 (636)
T ss_dssp             HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC------------BCCGGGSTTTCTTCCEE
T ss_pred             HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC------------ccChhhhhccCCCcCEE
Confidence            5677799999999999999955555555443       8999999999887            6788776  99999999


Q ss_pred             eccCcccccCCcccccCCCCCCEEeC------cCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccc
Q 040699          522 NLSHNDLTGSIPSTFSNLKHVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSY  595 (689)
Q Consensus       522 ~L~~n~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  595 (689)
                      ++++|++++ +|..+..+++|++|++      ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.  +.++.+++
T Consensus       519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L  594 (636)
T 4eco_A          519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI  594 (636)
T ss_dssp             ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred             ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence            999999997 7888999999999999      56888899999999999999999999999 67787643  78999999


Q ss_pred             cCCcCCCC
Q 040699          596 EGNTFLCG  603 (689)
Q Consensus       596 ~~n~~~c~  603 (689)
                      .+|++.|-
T Consensus       595 s~N~l~~~  602 (636)
T 4eco_A          595 KDNPNISI  602 (636)
T ss_dssp             CSCTTCEE
T ss_pred             cCCCCccc
Confidence            99998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.8e-40  Score=360.81  Aligned_cols=227  Identities=20%  Similarity=0.243  Sum_probs=167.0

Q ss_pred             CcCEEEccCCcCcccCChhhh----hcCCCceEEEccCCcCCcccc-cccc---CCCCCcEEeccCCcccccchhhhhcC
Q 040699          312 RLGMLDISNNNFRGHIPLEIG----DILPSLHVFNISMNALDGSIP-SSFG---NMNFLRILDLSNNQLTGEIPEHLAVG  383 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~-~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~~  383 (689)
                      +|++|++++|.+++.+|..++    ..++.|+.+++..+.+  .+| ..+.   ...+|+.|++++|.+. .++  ....
T Consensus       277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~  351 (562)
T 3a79_B          277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPS  351 (562)
T ss_dssp             SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSS
T ss_pred             cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-ccc--CccC
Confidence            566666666666655555442    2233444444444444  122 1111   1246777777777765 222  1134


Q ss_pred             CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc--ccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCc
Q 040699          384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE--ISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQ  460 (689)
Q Consensus       384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~  460 (689)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .|..+..+++|++|++++|.+.+.+| ..+.++++|+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            77888888888888887778888888999999999988763  34668899999999999999987444 4688899999


Q ss_pred             EEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC
Q 040699          461 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK  540 (689)
Q Consensus       461 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  540 (689)
                      +|++++|++++..|..+.  ++|++|++++|.++            .+|..+..+++|++|++++|+++++.+..+..++
T Consensus       432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~------------~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  497 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM------------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT  497 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC------------CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCT
T ss_pred             EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc------------ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCC
Confidence            999999999866554443  68999999999887            6777777999999999999999965555599999


Q ss_pred             CCCEEeCcCCcCCCCCc
Q 040699          541 HVESLDLSNNKLNGKIP  557 (689)
Q Consensus       541 ~L~~L~L~~N~l~~~~~  557 (689)
                      +|++|++++|++.+..+
T Consensus       498 ~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          498 SLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCCCEECCSCCBCCCHH
T ss_pred             CCCEEEecCCCcCCCcc
Confidence            99999999999987655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-37  Score=333.75  Aligned_cols=378  Identities=17%  Similarity=0.186  Sum_probs=247.2

Q ss_pred             CCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCccee
Q 040699          136 MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIF  215 (689)
Q Consensus       136 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  215 (689)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...|..+++|++|++++|.++.. ....+.++++|+.|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEE
Confidence            45666666666666555666666666666666666665455544566666666666666665532 22344455555555


Q ss_pred             eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEee
Q 040699          216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV  295 (689)
Q Consensus       216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  295 (689)
                      ++++|.+.+..+.                          ...+..+++|+.|++++|.+.+..|..++..+++|++|+++
T Consensus       109 ~L~~n~l~~~~~~--------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A          109 TLTQCNLDGAVLS--------------------------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             ECTTSCCBTHHHH--------------------------SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             eCCCCCCCccccC--------------------------cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            5555544321110                          01133445566666666665555454444555566666665


Q ss_pred             CCCCCCCCCCCCCCC--CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCccc
Q 040699          296 NDSLAGPFRLPIHSH--KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT  373 (689)
Q Consensus       296 ~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  373 (689)
                      +|.+.+..+..+..+  .+|+.|++++|.+.+ ++.....                ......+..+++|++|++++|++.
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~  225 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFK  225 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCC
T ss_pred             CCcccccChhhhhccccccccccccccCcccc-cchhhcc----------------ccccccccccceeeeEecCCCccc
Confidence            555555444433332  344444444444431 1111000                000112335567888888888877


Q ss_pred             ccchhhhhcC--CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccccccc--CCCCCCEEECCCCCCCCcC
Q 040699          374 GEIPEHLAVG--CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS--KCSSLEGLFLNNNNLSGKI  449 (689)
Q Consensus       374 ~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~  449 (689)
                      +.++..+...  ..+|+.|++++|...+....              .+.+....+..+.  ..++|++|++++|.+.+..
T Consensus       226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence            6666555432  26778888887765442111              1111112222222  2468999999999998888


Q ss_pred             ChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccc
Q 040699          450 PRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLT  529 (689)
Q Consensus       450 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  529 (689)
                      |..+..+++|++|++++|++++..|..|..+++|++|++++|.+++           ..|..+..+++|++|++++|+++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-----------IDSRMFENLDKLEVLDLSYNHIR  360 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECGGGGTTCTTCCEEECCSSCCC
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-----------cChhHhcCcccCCEEECCCCccc
Confidence            8889999999999999999998888889999999999999998763           56778899999999999999999


Q ss_pred             cCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          530 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       530 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      +..|..|.++++|++|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus       361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            88899999999999999999999988777888999999999999999999984

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-36  Score=325.91  Aligned_cols=343  Identities=20%  Similarity=0.214  Sum_probs=291.0

Q ss_pred             CCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCCh-hh
Q 040699          253 IFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPL-EI  331 (689)
Q Consensus       253 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~  331 (689)
                      ..|..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++.++. ..
T Consensus        45 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  124 (455)
T 3v47_A           45 LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF  124 (455)
T ss_dssp             ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSST
T ss_pred             CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccc
Confidence            34556778899999999999988777666678999999999999999998888999999999999999999854443 23


Q ss_pred             hhcCCCceEEEccCCcCCcccccc-ccCCCCCcEEeccCCcccccchhhhhc-CCCCCCEEEccCCcCCccCcccc----
Q 040699          332 GDILPSLHVFNISMNALDGSIPSS-FGNMNFLRILDLSNNQLTGEIPEHLAV-GCVNLESLVLSNNSLKGHMFSRN----  405 (689)
Q Consensus       332 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~----  405 (689)
                      +..+++|+.|++++|.+.+..|.. |.++++|++|++++|++.+..+..+.. ...+|+.|++++|.+.+.....+    
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~  204 (455)
T 3v47_A          125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK  204 (455)
T ss_dssp             TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred             ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence            555889999999999999887766 889999999999999998555544332 12689999999999887665433    


Q ss_pred             ----cCCCCccEEeccCCcccccccccccCC---CCCCEEECCCCCCCCc----------CChhhcC--CCCCcEEEcCC
Q 040699          406 ----FNLANLMSLQLEGNHFIGEISQSLSKC---SSLEGLFLNNNNLSGK----------IPRWLGD--LTRLQYIIMPN  466 (689)
Q Consensus       406 ----~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~i~~~----------~~~~l~~--l~~L~~L~l~~  466 (689)
                          ..+++|++|++++|.+.+..+..+...   ++|+.|++++|...+.          .+..+.+  .++|++|++++
T Consensus       205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (455)
T 3v47_A          205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK  284 (455)
T ss_dssp             HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred             cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence                366899999999999988877766554   8999999999865532          1122322  36899999999


Q ss_pred             CccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699          467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD  546 (689)
Q Consensus       467 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  546 (689)
                      |.+.+..|..+..+++|++|++++|.+++           ..|..+.++++|++|++++|.+++..|..|+++++|++|+
T Consensus       285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          285 SKIFALLKSVFSHFTDLEQLTLAQNEINK-----------IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccccccchhhcccCCCCCEEECCCCcccc-----------cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            99999999999999999999999998873           6677899999999999999999988899999999999999


Q ss_pred             CcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCC
Q 040699          547 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPL  606 (689)
Q Consensus       547 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  606 (689)
                      +++|++++..|..+..+++|+.|++++|++++..+..+..++.++.+++.+|++.|+||.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999988899999999999999999999987777778889999999999999999984

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.1e-35  Score=311.28  Aligned_cols=390  Identities=23%  Similarity=0.237  Sum_probs=205.7

Q ss_pred             CCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCC-CCCCCCCccCccccCCCCCC-------------CEEeCCC
Q 040699           80 FKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS-TRGTNSSRILDQGLCSLMHL-------------QELYMAD  145 (689)
Q Consensus        80 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~~~~~~~~~~l~~l~~L-------------~~L~L~~  145 (689)
                      .++|++|++++|.+   +.+|..++. +++|++|++++| ..+.    +|. .++++++|             ++|++++
T Consensus        10 ~~~L~~L~l~~n~l---~~iP~~i~~-L~~L~~L~l~~n~~~~~----~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~   80 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL---TEMPVEAEN-VKSKTEYYNAWSEWERN----APP-GNGEQREMAVSRLRDCLDRQAHELELNN   80 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHT----SCT-TSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred             cccchhhhcccCch---hhCChhHhc-ccchhhhhccCCccccc----CCc-ccccchhcchhhhhhhhccCCCEEEecC
Confidence            45677777777766   556666555 666777776666 3333    443 45555543             5666666


Q ss_pred             CcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcceeeccCCccccc
Q 040699          146 NDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAE  225 (689)
Q Consensus       146 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  225 (689)
                      |.+++ +|..   .++|++|++++|.+++ ++. .   .++|++|++++|.+++ ++  .+  .++|+.|++++|.+   
T Consensus        81 ~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~-~---~~~L~~L~l~~n~l~~-l~--~~--~~~L~~L~L~~n~l---  143 (454)
T 1jl5_A           81 LGLSS-LPEL---PPHLESLVASCNSLTE-LPE-L---PQSLKSLLVDNNNLKA-LS--DL--PPLLEYLGVSNNQL---  143 (454)
T ss_dssp             SCCSC-CCSC---CTTCSEEECCSSCCSS-CCC-C---CTTCCEEECCSSCCSC-CC--SC--CTTCCEEECCSSCC---
T ss_pred             Ccccc-CCCC---cCCCCEEEccCCcCCc-ccc-c---cCCCcEEECCCCccCc-cc--CC--CCCCCEEECcCCCC---
Confidence            65553 2221   2456666666666552 443 1   2455666666555542 11  00  13455555544433   


Q ss_pred             ccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCC
Q 040699          226 ITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRL  305 (689)
Q Consensus       226 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  305 (689)
                                               .+ +| .+..+++|+.|++++|.+.+ +|.    ..++|++|++++|.+++. + 
T Consensus       144 -------------------------~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~-  189 (454)
T 1jl5_A          144 -------------------------EK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P-  189 (454)
T ss_dssp             -------------------------SS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C-
T ss_pred             -------------------------CC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c-
Confidence                                     22 33 36677788888888887774 443    235788888888887774 3 


Q ss_pred             CCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCC
Q 040699          306 PIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCV  385 (689)
Q Consensus       306 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  385 (689)
                      .+..+++|++|++++|.++ .+|..    .++|+.|++++|.+. .+| .+..+++|++|++++|++. .+|.    .++
T Consensus       190 ~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~  257 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPP  257 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCT
T ss_pred             cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----ccc
Confidence            5777888888888888877 34432    347888888888777 455 3777888888888888877 4553    246


Q ss_pred             CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699          386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP  465 (689)
Q Consensus       386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  465 (689)
                      +|++|++++|.+.++..    ..++|+.|++++|.+.+.. .   ..++|+.|++++|.+.+ ++.   ..++|++|+++
T Consensus       258 ~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls  325 (454)
T 1jl5_A          258 SLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVS  325 (454)
T ss_dssp             TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECC
T ss_pred             ccCEEECCCCcccccCc----ccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECC
Confidence            78888888887776432    2467788888888776531 1   12577788888877763 221   12477778888


Q ss_pred             CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCccccc--CCcccccCCCCCC
Q 040699          466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG--SIPSTFSNLKHVE  543 (689)
Q Consensus       466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~  543 (689)
                      +|++++ +|..   +++|++|++++|.++            .+|.   .+++|++|++++|++++  .+|..+..     
T Consensus       326 ~N~l~~-lp~~---~~~L~~L~L~~N~l~------------~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-----  381 (454)
T 1jl5_A          326 NNKLIE-LPAL---PPRLERLIASFNHLA------------EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-----  381 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-----
T ss_pred             CCcccc-cccc---CCcCCEEECCCCccc------------cccc---hhhhccEEECCCCCCCcCCCChHHHHh-----
Confidence            777775 3332   467777777777765            3444   35677778888777776  44444432     


Q ss_pred             EEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC--CCCCc
Q 040699          544 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEW  583 (689)
Q Consensus       544 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~  583 (689)
                         ++.|...+.+|..   +++|+.|++++|++++  .+|.+
T Consensus       382 ---L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          382 ---LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             ---EECCC----------------------------------
T ss_pred             ---hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence               2234444445442   3678888888888876  55553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=319.35  Aligned_cols=335  Identities=19%  Similarity=0.171  Sum_probs=285.8

Q ss_pred             CCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhh
Q 040699          253 IFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIG  332 (689)
Q Consensus       253 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  332 (689)
                      .+|..+  .+.++.|++++|.+.+..+.. +..+++|++|++++|.+.++.+..|.++++|++|++++|.++ .+|...+
T Consensus        25 ~ip~~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~  100 (477)
T 2id5_A           25 AVPEGI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVF  100 (477)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSS
T ss_pred             cCCCCC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccc
Confidence            345443  358999999999998665544 688999999999999999988889999999999999999998 7777766


Q ss_pred             hcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCcc
Q 040699          333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLM  412 (689)
Q Consensus       333 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  412 (689)
                      ..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|++|++++|.+.+.....+..+++|+
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI  179 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred             cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence            77899999999999999888889999999999999999998 56666667799999999999999988888889999999


Q ss_pred             EEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699          413 SLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  492 (689)
Q Consensus       413 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  492 (689)
                      .|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|++|++++|+++...+..|..+++|++|++++|.
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence            99999999988888889999999999999998877777766666799999999999997766789999999999999998


Q ss_pred             cccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEecc
Q 040699          493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  572 (689)
Q Consensus       493 ~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  572 (689)
                      +++           ..+..+..+++|+.|++++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|+++
T Consensus       260 l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          260 IST-----------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             CCE-----------ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             CCc-----------cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            763           556678899999999999999999889999999999999999999998888888999999999999


Q ss_pred             CCcCcCCCCCccccccccCcccccCCcCCCCC
Q 040699          573 YNNLSGEIPEWEAQFATFNENSYEGNTFLCGL  604 (689)
Q Consensus       573 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~  604 (689)
                      +|++.|.++..+ .+.......+.++...|..
T Consensus       329 ~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~  359 (477)
T 2id5_A          329 SNPLACDCRLLW-VFRRRWRLNFNRQQPTCAT  359 (477)
T ss_dssp             SSCEECSGGGHH-HHTTTTSSCCTTCCCBEEE
T ss_pred             CCCccCccchHh-HHhhhhccccCccCceeCC
Confidence            999998876421 1222333455566655543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=318.02  Aligned_cols=322  Identities=20%  Similarity=0.166  Sum_probs=209.7

Q ss_pred             EEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccC
Q 040699          266 YADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISM  345 (689)
Q Consensus       266 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  345 (689)
                      .++.++..+. .+|..   -.++++.|++++|.++++.+..|.++++|++|++++|.+++..|. .+..+++|+.|++++
T Consensus        15 ~v~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRS   89 (477)
T ss_dssp             EEECCSCCCS-SCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-cCCCC---CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCC
Confidence            3444444444 34432   234667777777777766666667777777777777776633333 333466777777777


Q ss_pred             CcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccc
Q 040699          346 NALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEI  425 (689)
Q Consensus       346 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~  425 (689)
                      |.+.+..+..|.++++|++|++++|++. .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            7776555556667777777777777776 444444455677777777777776666666667777777777777766665


Q ss_pred             cccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCccc
Q 040699          426 SQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLI  505 (689)
Q Consensus       426 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~  505 (689)
                      +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+..+.......+|++|++++|.++           
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----------  237 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-----------  237 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-----------
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-----------
Confidence            566667777777777777776655666666777777777776655555544444556777777766665           


Q ss_pred             CCCc-hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCcc
Q 040699          506 GPIP-PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWE  584 (689)
Q Consensus       506 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  584 (689)
                       .+| ..+..+++|+.|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|+.|++++|.++...+..+
T Consensus       238 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  316 (477)
T 2id5_A          238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF  316 (477)
T ss_dssp             -SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred             -ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence             233 456667777777777777766666666777777777777777776666677777777777777777766555555


Q ss_pred             ccccccCcccccCCcCCCCCC
Q 040699          585 AQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       585 ~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      ..+..++.+++.+||+.|+|+
T Consensus       317 ~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          317 HSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SCGGGCCEEECCSSCEECSGG
T ss_pred             CCCcccCEEEccCCCccCccc
Confidence            566666777777777777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=8e-35  Score=308.14  Aligned_cols=386  Identities=22%  Similarity=0.261  Sum_probs=172.2

Q ss_pred             CCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCC
Q 040699          107 MPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTS  186 (689)
Q Consensus       107 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  186 (689)
                      .++|++|++++|..+.    +|+ .++++++|++|++++|.+.+..|..++.+++|+.++++.|..            .+
T Consensus        10 ~~~L~~L~l~~n~l~~----iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~   72 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTE----MPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQ   72 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HT
T ss_pred             cccchhhhcccCchhh----CCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cC
Confidence            4566777777664454    664 567777777777777777666676666666542222221110            12


Q ss_pred             CCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCE
Q 040699          187 IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEY  266 (689)
Q Consensus       187 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  266 (689)
                      +++|++++|.+++ ++.    -.++|+.|++++|.+.+                             +|.   ..++|+.
T Consensus        73 l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-----------------------------lp~---~~~~L~~  115 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-----------------------------LPE---LPQSLKS  115 (454)
T ss_dssp             CSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-----------------------------CCC---CCTTCCE
T ss_pred             CCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-----------------------------ccc---ccCCCcE
Confidence            3444444444332 110    01334444444443321                             111   1134555


Q ss_pred             EEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCC
Q 040699          267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMN  346 (689)
Q Consensus       267 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  346 (689)
                      |++++|.+.+ ++.    ..++|++|++++|.+++ .+ .+.++++|++|++++|+++ .+|..    .++|+.|++++|
T Consensus       116 L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n  183 (454)
T 1jl5_A          116 LLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNN  183 (454)
T ss_dssp             EECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSS
T ss_pred             EECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCC
Confidence            5555554442 221    11455556665555554 22 3555566666666666555 34432    235666666666


Q ss_pred             cCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccc
Q 040699          347 ALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS  426 (689)
Q Consensus       347 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  426 (689)
                      .+.+ +| .+.++++|+.|++++|++. .+|..    .++|++|++++|.+..+.  .+..+++|++|++++|++.+. |
T Consensus       184 ~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l-~  253 (454)
T 1jl5_A          184 QLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL-P  253 (454)
T ss_dssp             CCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSC-C
T ss_pred             cCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcc-c
Confidence            6554 33 3556666666666666655 33321    235666666666655332  255566666666666665532 2


Q ss_pred             ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccC
Q 040699          427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIG  506 (689)
Q Consensus       427 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~  506 (689)
                      .   .+++|++|++++|.+.+ +|..   +++|++|++++|++++.. .   ..++|++|++++|.+++           
T Consensus       254 ~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~-----------  311 (454)
T 1jl5_A          254 D---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-----------  311 (454)
T ss_dssp             S---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-----------
T ss_pred             c---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-----------
Confidence            2   13556666666666653 3332   255666666666655421 1   11456666666665541           


Q ss_pred             CCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC--CCCCcc
Q 040699          507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEWE  584 (689)
Q Consensus       507 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~  584 (689)
                       ++.   -.++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|++++  .+|.++
T Consensus       312 -i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          312 -LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             -ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             -ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence             111   01355666666666654 3322   3556666666666653 333   24556666666666655  455544


Q ss_pred             ccc-------------cccCcccccCCcCCC
Q 040699          585 AQF-------------ATFNENSYEGNTFLC  602 (689)
Q Consensus       585 ~~~-------------~~~~~~~~~~n~~~c  602 (689)
                      ..+             +.++.+++.+|+...
T Consensus       380 ~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          380 EDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CEEECCC------------------------
T ss_pred             HhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            444             678888999998765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-33  Score=298.93  Aligned_cols=344  Identities=27%  Similarity=0.338  Sum_probs=194.8

Q ss_pred             CCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCccee
Q 040699          136 MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIF  215 (689)
Q Consensus       136 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  215 (689)
                      ++++.|+++++.++. +| .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+....   .+.++++|+.|
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT---PLANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEE
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccCh---hhcCCCCCCEE
Confidence            345555555555542 22 2445555555555555554 2332  455555555555555544211   13344444444


Q ss_pred             eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEee
Q 040699          216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV  295 (689)
Q Consensus       216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  295 (689)
                      ++++|.+.+.                             + .+..+++|+.|++++|.+.+ ++.  +..+++|++|++.
T Consensus       118 ~L~~n~l~~~-----------------------------~-~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~  164 (466)
T 1o6v_A          118 TLFNNQITDI-----------------------------D-PLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG  164 (466)
T ss_dssp             ECCSSCCCCC-----------------------------G-GGTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE
T ss_pred             ECCCCCCCCC-----------------------------h-HHcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC
Confidence            4444332110                             0 13344556666666665553 222  3455555555554


Q ss_pred             CCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCccccc
Q 040699          296 NDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE  375 (689)
Q Consensus       296 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  375 (689)
                      + .+.+..  .+..++                         +|+.|++++|.+.+.  ..+..+++|++|++++|.+.+.
T Consensus       165 ~-~~~~~~--~~~~l~-------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  214 (466)
T 1o6v_A          165 N-QVTDLK--PLANLT-------------------------TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI  214 (466)
T ss_dssp             E-SCCCCG--GGTTCT-------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             C-cccCch--hhccCC-------------------------CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccc
Confidence            2 222211  134444                         455555555544422  2245555566666666555532


Q ss_pred             chhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcC
Q 040699          376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD  455 (689)
Q Consensus       376 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~  455 (689)
                      .+   +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..
T Consensus       215 ~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~  285 (466)
T 1o6v_A          215 TP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG  285 (466)
T ss_dssp             GG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             cc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence            22   22355666666666665543  245556666666666666655433  6667777777777777764333  666


Q ss_pred             CCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCccc
Q 040699          456 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPST  535 (689)
Q Consensus       456 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  535 (689)
                      +++|+.|++++|++.+..+  +..+++|++|++++|.+++           ..|  +..+++|+.|++++|++++.  ..
T Consensus       286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-----------~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD-----------ISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC-----------CGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC-----------chh--hccCccCCEeECCCCccCCc--hh
Confidence            7777777777777765433  6677777777777777652           222  56777788888888877754  45


Q ss_pred             ccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699          536 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       536 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  578 (689)
                      +..+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            7777888888888888877666  6777888888888887775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.4e-33  Score=298.78  Aligned_cols=238  Identities=25%  Similarity=0.363  Sum_probs=139.8

Q ss_pred             ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC
Q 040699          258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS  337 (689)
Q Consensus       258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  337 (689)
                      +..+++|+.|+++ +.+.+. +.  +..+++|+.|++++|.+.+..  .+..+++|++|++++|.+.+..+   ...+++
T Consensus       152 ~~~l~~L~~L~l~-~~~~~~-~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~  222 (466)
T 1o6v_A          152 LSGLTSLQQLSFG-NQVTDL-KP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP---LGILTN  222 (466)
T ss_dssp             GTTCTTCSEEEEE-ESCCCC-GG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG---GGGCTT
T ss_pred             hccCCcccEeecC-CcccCc-hh--hccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc---ccccCC
Confidence            3456678888875 344433 22  578999999999999887642  35667777777777777764332   223566


Q ss_pred             ceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699          338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE  417 (689)
Q Consensus       338 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  417 (689)
                      |+.|++++|.+.+.  ..+..+++|+.|++++|.+.+ ++.  +..+++|++|++++|.+.+                  
T Consensus       223 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~------------------  279 (466)
T 1o6v_A          223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISN------------------  279 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCC------------------
T ss_pred             CCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCc------------------
Confidence            66666666666542  245555666666666665552 222  2334555555555554443                  


Q ss_pred             CCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccc
Q 040699          418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL  497 (689)
Q Consensus       418 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l  497 (689)
                            ..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++++..|  +..+++|++|++++|.+++  
T Consensus       280 ------~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--  345 (466)
T 1o6v_A          280 ------ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--  345 (466)
T ss_dssp             ------CGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC--
T ss_pred             ------ccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC--
Confidence                  322  4455555555555555553322  4455556666666665554433  4555666666666665541  


Q ss_pred             ccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       498 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                                + ..+..+++|+.|++++|++++..|  +..+++|++|++++|++++
T Consensus       346 ----------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          346 ----------V-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ----------C-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ----------c-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence                      1 345566666666666666665554  5666666666666666664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-33  Score=298.07  Aligned_cols=353  Identities=19%  Similarity=0.217  Sum_probs=198.2

Q ss_pred             CCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCC
Q 040699          107 MPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTS  186 (689)
Q Consensus       107 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  186 (689)
                      +++|++|++++|....    ++  .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++ ++   +..+++
T Consensus        41 l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~  107 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTK  107 (457)
T ss_dssp             HTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTT
T ss_pred             cCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCc
Confidence            6677777777763333    33  466677777777777777643 3  6677777777777777763 32   566777


Q ss_pred             CCEEeccCCcceeecCcccccCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCE
Q 040699          187 IEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEY  266 (689)
Q Consensus       187 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  266 (689)
                      |++|++++|.++. +   ++..+++|+.|++++|.+.+.                               .+..+++|+.
T Consensus       108 L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~l~~L~~  152 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI-------------------------------DVSHNTQLTE  152 (457)
T ss_dssp             CCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC-------------------------------CCTTCTTCCE
T ss_pred             CCEEECCCCcCCe-e---cCCCCCcCCEEECCCCcccee-------------------------------ccccCCcCCE
Confidence            7777777776653 2   255566666666666644321                               0234455666


Q ss_pred             EEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCC
Q 040699          267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMN  346 (689)
Q Consensus       267 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  346 (689)
                      |++++|...+.++   +..+++|+.|++++|.++++.   +..+++|+.|++++|.+++ ++   +..+++|+.|++++|
T Consensus       153 L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          153 LDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             EECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred             EECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCC
Confidence            6666664433332   344555555555555555421   4455555555555555542 21   122445555555555


Q ss_pred             cCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccccc
Q 040699          347 ALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS  426 (689)
Q Consensus       347 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  426 (689)
                      .+++ +|  +..+++|+.|++++|+++ .+|.   ..+++|+.|++++|              +|+.|++++|...+..|
T Consensus       223 ~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          223 KLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE
T ss_pred             cccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc
Confidence            5543 22  444555555555555554 2221   12444555544433              23344455555444333


Q ss_pred             ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccC
Q 040699          427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIG  506 (689)
Q Consensus       427 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~  506 (689)
                        +..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++++|+++           +
T Consensus       282 --~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~-----------~  332 (457)
T 3bz5_A          282 --AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELT-----------E  332 (457)
T ss_dssp             --CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCS-----------C
T ss_pred             --ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccc-----------c
Confidence              34455555555555554444442   1223333333222             45555555555544           3


Q ss_pred             CCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCc
Q 040699          507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  583 (689)
Q Consensus       507 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  583 (689)
                       ++  +..+++|+.|++++|++++        ++.|+.|++++|.+.+.     ..+..|..+++++|.++|.+|..
T Consensus       333 -l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          333 -LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             -CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             -cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence             22  7778888889998888875        25667778888888765     23456777899999999888864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.6e-33  Score=294.28  Aligned_cols=354  Identities=18%  Similarity=0.223  Sum_probs=171.3

Q ss_pred             CCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCC
Q 040699           55 FPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCS  134 (689)
Q Consensus        55 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~  134 (689)
                      +++|++|++++|.+++. +  .++.+++|++|++++|.+  .+ ++  +.. +++|++|++++|....    +   .+++
T Consensus        41 l~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l--~~-~~--~~~-l~~L~~L~Ls~N~l~~----~---~~~~  104 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNI--TT-LD--LSQ-NTNLTYLACDSNKLTN----L---DVTP  104 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCC--SC-CC--CTT-CTTCSEEECCSSCCSC----C---CCTT
T ss_pred             cCCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcC--Ce-Ec--ccc-CCCCCEEECcCCCCce----e---ecCC
Confidence            45555555555555432 1  344555555555555554  11 21  222 5555555555553222    2   2455


Q ss_pred             CCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCCCCcce
Q 040699          135 LMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKI  214 (689)
Q Consensus       135 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  214 (689)
                      +++|++|++++|.+++. +  ++.+++|++|++++|++++ +   .+..+++|++|++++|...+..   .+..+++|+.
T Consensus       105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~  174 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTT  174 (457)
T ss_dssp             CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCE
T ss_pred             CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc---ccccCCcCCE
Confidence            66666666666666542 2  5566666666666666653 3   2455666666666666432221   2333444444


Q ss_pred             eeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEe
Q 040699          215 FYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSL  294 (689)
Q Consensus       215 L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l  294 (689)
                      |++++|.+.+                             +|  +..+++|+.|++++|.+.+. +   +..+++|+.|++
T Consensus       175 L~ls~n~l~~-----------------------------l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~L  219 (457)
T 3bz5_A          175 LDCSFNKITE-----------------------------LD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDC  219 (457)
T ss_dssp             EECCSSCCCC-----------------------------CC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEEC
T ss_pred             EECCCCccce-----------------------------ec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEEC
Confidence            4444443321                             00  22334455555555554432 1   244555555555


Q ss_pred             eCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccc
Q 040699          295 VNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG  374 (689)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  374 (689)
                      ++|.++++ +  +..+++|++|++++|++++ +|.   ..+++|+.|+++.|              +|+.|++++|...+
T Consensus       220 s~N~l~~i-p--~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~  278 (457)
T 3bz5_A          220 SSNKLTEI-D--VTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLI  278 (457)
T ss_dssp             CSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCC
T ss_pred             cCCccccc-C--ccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCC
Confidence            55555552 2  4455555555555555552 221   12344555544432              23444455554444


Q ss_pred             cchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhc
Q 040699          375 EIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG  454 (689)
Q Consensus       375 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~  454 (689)
                      .+|                           +..+++|+.|++++|...+.+|.   ..++|+.|++++|           
T Consensus       279 ~~~---------------------------~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-----------  317 (457)
T 3bz5_A          279 YFQ---------------------------AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-----------  317 (457)
T ss_dssp             EEE---------------------------CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred             ccc---------------------------ccccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence            443                           23344555555555544333332   2234444443333           


Q ss_pred             CCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcc
Q 040699          455 DLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS  534 (689)
Q Consensus       455 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  534 (689)
                        ++|++|++++|++++. +  +..+++|+.|++++|++++                   ++.|+.|++++|.+.+.   
T Consensus       318 --~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-------------------l~~L~~L~l~~n~l~g~---  370 (457)
T 3bz5_A          318 --PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-------------------FSSVGKIPALNNNFEAE---  370 (457)
T ss_dssp             --TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------------------CTTGGGSSGGGTSEEEE---
T ss_pred             --ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------------------ccccccccccCCcEEec---
Confidence              4555666666666543 2  5556666666666665541                   23444555566655543   


Q ss_pred             cccCCCCCCEEeCcCCcCCCCCchhc
Q 040699          535 TFSNLKHVESLDLSNNKLNGKIPHQL  560 (689)
Q Consensus       535 ~~~~l~~L~~L~L~~N~l~~~~~~~~  560 (689)
                        ..+..|+.+++++|+++|.+|..+
T Consensus       371 --~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          371 --GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             --EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             --ceeeecCccccccCcEEEEcChhH
Confidence              233445556666666666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.7e-33  Score=289.24  Aligned_cols=314  Identities=20%  Similarity=0.206  Sum_probs=230.2

Q ss_pred             cccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCC
Q 040699          257 FLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILP  336 (689)
Q Consensus       257 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  336 (689)
                      .+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.++ .+|...+..++
T Consensus        64 ~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~  141 (390)
T 3o6n_A           64 LLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP  141 (390)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             HhcccccCcEEECCCCcccccChhh-ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCC
Confidence            3556778888888888877544433 577888888888888888877777788888888888888887 67776666678


Q ss_pred             CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699          337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL  416 (689)
Q Consensus       337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  416 (689)
                      +|+.|++++|.+.+..+..|.++++|++|++++|+++ .++.   ..+++|+.|++++|.+.+.     ...++|++|++
T Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~---~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l  212 (390)
T 3o6n_A          142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEELDA  212 (390)
T ss_dssp             TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG---GGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred             CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc---ccccccceeeccccccccc-----CCCCcceEEEC
Confidence            8888888888888777777888888888888888887 4432   2367888888888877653     23567888888


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699          417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  496 (689)
Q Consensus       417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  496 (689)
                      ++|.+.....   ...++|+.|++++|.+.+.  .++..+++|++|++++|.+++..|..|..+++|++|++++|.++  
T Consensus       213 ~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--  285 (390)
T 3o6n_A          213 SHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--  285 (390)
T ss_dssp             CSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--
T ss_pred             CCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--
Confidence            8888765432   2346788888888888743  56777888888888888888777788888888888888888776  


Q ss_pred             cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcC
Q 040699          497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  576 (689)
Q Consensus       497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  576 (689)
                                .+|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|+.|++++|++
T Consensus       286 ----------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          286 ----------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             ----------EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred             ----------ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCc
Confidence                      34555667788888888888887 4556677788888888888888754 2  55677888888888888


Q ss_pred             cCCCCCccccccccCcccccCCcCCCCC
Q 040699          577 SGEIPEWEAQFATFNENSYEGNTFLCGL  604 (689)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~n~~~c~~  604 (689)
                      .|....  ..+..+....+.+++..|.+
T Consensus       352 ~~~~~~--~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          352 DCNSLR--ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             EHHHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred             cchhHH--HHHHHHHhhcccccCceecc
Confidence            775432  12344445555666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.1e-33  Score=281.05  Aligned_cols=259  Identities=31%  Similarity=0.545  Sum_probs=222.7

Q ss_pred             CCceEEEccCCcCCc--cccccccCCCCCcEEeccC-CcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCcc
Q 040699          336 PSLHVFNISMNALDG--SIPSSFGNMNFLRILDLSN-NQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLM  412 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  412 (689)
                      .+++.|++++|.+.+  .+|..|.++++|++|++++ |.+.+.+|..+. .+++|++|++++|.+.+..+..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467777777777776  6777788888888888884 777766766554 488888888888888777777788888888


Q ss_pred             EEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCC-CCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699          413 SLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT-RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  491 (689)
Q Consensus       413 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  491 (689)
                      +|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|++|++++|++++..|..+..++ |++|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999998888888888899999999999999999888888888887 899999999999988888888887 999999888


Q ss_pred             ccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699          492 NISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  571 (689)
Q Consensus       492 ~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  571 (689)
                      .+++           ..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++
T Consensus       208 ~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          208 MLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             EEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             cccC-----------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence            8763           6788899999999999999999876665 788999999999999999999999999999999999


Q ss_pred             cCCcCcCCCCCccccccccCcccccCCcCCCCCCCCCC
Q 040699          572 AYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPIC  609 (689)
Q Consensus       572 ~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c  609 (689)
                      ++|++++.+|.. ..++.++.+++.+||+.|+.|...|
T Consensus       276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          276 SFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCC
Confidence            999999999987 6889999999999999999877666

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.4e-32  Score=282.79  Aligned_cols=315  Identities=19%  Similarity=0.185  Sum_probs=270.7

Q ss_pred             CCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCce
Q 040699          260 HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH  339 (689)
Q Consensus       260 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  339 (689)
                      .+.+++.++++++.+. .+|..++..+++|++|+++++.+.+..+..+..+++|++|++++|.++ .++...+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            3578999999999887 577777899999999999999999988888999999999999999998 56555556689999


Q ss_pred             EEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCC
Q 040699          340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN  419 (689)
Q Consensus       340 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  419 (689)
                      .|++++|.+.+..+..|.++++|++|++++|++. .++...+.++++|++|++++|.+.+..   +..+++|+.|++++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccc
Confidence            9999999999766667899999999999999998 666666777999999999999998763   556899999999999


Q ss_pred             cccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccccc
Q 040699          420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDL  499 (689)
Q Consensus       420 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l  499 (689)
                      .+.+.     ...++|++|++++|.+... +..  ..++|+.|++++|.+++.  ..+..+++|++|++++|.+++    
T Consensus       197 ~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~----  262 (390)
T 3o6n_A          197 LLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK----  262 (390)
T ss_dssp             CCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE----
T ss_pred             ccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC----
Confidence            87643     3456899999999999844 432  357999999999999864  578899999999999998873    


Q ss_pred             CCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699          500 SCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  579 (689)
Q Consensus       500 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  579 (689)
                             ..|..+..+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++..
T Consensus       263 -------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          263 -------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             -------EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             -------cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence                   567889999999999999999985 5666788999999999999999 4566778889999999999999855


Q ss_pred             CCCccccccccCcccccCCcCCCCCCC
Q 040699          580 IPEWEAQFATFNENSYEGNTFLCGLPL  606 (689)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~n~~~c~~~~  606 (689)
                      .   +..++.++.+++.+||+.|+|..
T Consensus       334 ~---~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          334 K---LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             C---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             C---chhhccCCEEEcCCCCccchhHH
Confidence            3   45678899999999999998643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.3e-32  Score=299.02  Aligned_cols=317  Identities=20%  Similarity=0.199  Sum_probs=256.9

Q ss_pred             CCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhh
Q 040699          254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGD  333 (689)
Q Consensus       254 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  333 (689)
                      .+..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.+..+..|.++++|++|++++|.++ .+|...+.
T Consensus        67 p~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~  144 (597)
T 3oja_B           67 PAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH  144 (597)
T ss_dssp             CTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             CHHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhc
Confidence            3445667888999999999888655544 578899999999999999888888889999999999999998 77777766


Q ss_pred             cCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccE
Q 040699          334 ILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMS  413 (689)
Q Consensus       334 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  413 (689)
                      .+++|+.|++++|.+.+..|..|.++++|+.|++++|.+. .++.   ..+++|+.|++++|.+.+.     ...++|+.
T Consensus       145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~l~~n~l~~l-----~~~~~L~~  215 (597)
T 3oja_B          145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEE  215 (597)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG---GGCTTCSEEECCSSCCSEE-----ECCTTCSE
T ss_pred             cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh---hhhhhhhhhhcccCccccc-----cCCchhhe
Confidence            6889999999999998888888999999999999999987 4442   3378899999999987753     34678999


Q ss_pred             EeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccc
Q 040699          414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI  493 (689)
Q Consensus       414 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  493 (689)
                      |++++|.+....+..   .++|+.|++++|.+++  +.++..+++|+.|++++|.+.+..|..|..+++|++|++++|.+
T Consensus       216 L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          216 LDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             EECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             eeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence            999999887554332   3689999999999885  46788899999999999999988888999999999999999988


Q ss_pred             ccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccC
Q 040699          494 SGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  573 (689)
Q Consensus       494 ~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  573 (689)
                      +            .+|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|++++..   +..+++|+.|++++
T Consensus       291 ~------------~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~  354 (597)
T 3oja_B          291 V------------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSH  354 (597)
T ss_dssp             C------------EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCS
T ss_pred             C------------CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeC
Confidence            7            35666677889999999999998 56777788899999999999998653   56678999999999


Q ss_pred             CcCcCCCCCccccccccCcccccCCcCCCCC
Q 040699          574 NNLSGEIPEWEAQFATFNENSYEGNTFLCGL  604 (689)
Q Consensus       574 N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~  604 (689)
                      |++.|.+..  ..+..+....+.+++..|+.
T Consensus       355 N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          355 NDWDCNSLR--ALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             SCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred             CCCCChhHH--HHHHHHhhhccccccccCCc
Confidence            999876543  23445555566777777765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.3e-30  Score=268.07  Aligned_cols=304  Identities=22%  Similarity=0.303  Sum_probs=187.7

Q ss_pred             CCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCce
Q 040699          260 HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH  339 (689)
Q Consensus       260 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  339 (689)
                      .+++++.|+++++.+.. ++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++  .+..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~~-~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCS
T ss_pred             hcccccEEEEeCCcccc-chh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcCC
Confidence            45566666666666653 333  3566677777777766665433  666667777777777665 333  233466677


Q ss_pred             EEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCC
Q 040699          340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN  419 (689)
Q Consensus       340 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  419 (689)
                      +|++++|.+.+..+  +..+++|+.|++++|.....++.  +..+++|++|++++|.+.+...  +..+++|++|++++|
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            77777776664322  66667777777777654433333  3446677777777766665433  556667777777777


Q ss_pred             cccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccccc
Q 040699          420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDL  499 (689)
Q Consensus       420 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l  499 (689)
                      .+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|.++.    
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----  257 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD----  257 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC----
Confidence            6654332  5666677777777776664333  5666677777777776664433  6666777777777666551    


Q ss_pred             CCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699          500 SCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  579 (689)
Q Consensus       500 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  579 (689)
                              + +.+..+++|++|++++|++++.  +.+..+++|++|++++|++++..|..+..+++|+.|++++|++++.
T Consensus       258 --------~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          258 --------I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             --------C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             --------C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence                    2 3456666677777777766643  3456667777777777777666666666667777777777776655


Q ss_pred             CCCccccccccCcccccCCcC
Q 040699          580 IPEWEAQFATFNENSYEGNTF  600 (689)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~n~~  600 (689)
                      .|  +..++.++.+++.+|+.
T Consensus       327 ~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          327 RP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GG--GGGCTTCSEESSSCC--
T ss_pred             cC--hhhhhccceeehhhhcc
Confidence            44  44566666666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=2.4e-30  Score=266.09  Aligned_cols=285  Identities=21%  Similarity=0.298  Sum_probs=244.9

Q ss_pred             ccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCC
Q 040699          258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPS  337 (689)
Q Consensus       258 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  337 (689)
                      +..+++|+.|++++|.+.+. +.  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+. .++.  +..+++
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~-~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~  133 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDI-SP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP--LANLTK  133 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG--GTTCTT
T ss_pred             hhhcCCccEEEccCCccccc-hh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh--hccCCc
Confidence            56788999999999998854 43  68999999999999999875  35889999999999999998 4554  455899


Q ss_pred             ceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699          338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE  417 (689)
Q Consensus       338 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  417 (689)
                      |+.|++++|......+ .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+...  +..+++|+.|+++
T Consensus       134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  207 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY  207 (347)
T ss_dssp             CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             eeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecc
Confidence            9999999997654444 4899999999999999998 5554  5569999999999999987554  7789999999999


Q ss_pred             CCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccccc
Q 040699          418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL  497 (689)
Q Consensus       418 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l  497 (689)
                      +|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.++   
T Consensus       208 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~---  278 (347)
T 4fmz_A          208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS---  278 (347)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC---
T ss_pred             cCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC---
Confidence            999876644  8899999999999999985444  88999999999999999864  46889999999999999887   


Q ss_pred             ccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCc
Q 040699          498 DLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  577 (689)
Q Consensus       498 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  577 (689)
                               .+ +.+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       279 ---------~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          279 ---------DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ---------CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ---------CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                     23 458889999999999999998899999999999999999999998776  788999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=3.2e-31  Score=292.13  Aligned_cols=313  Identities=19%  Similarity=0.201  Sum_probs=270.8

Q ss_pred             CCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceE
Q 040699          261 QHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHV  340 (689)
Q Consensus       261 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  340 (689)
                      +.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+++..+..+++|+.
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            478899999999887 567777899999999999999999988889999999999999999998 566666666899999


Q ss_pred             EEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCc
Q 040699          341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH  420 (689)
Q Consensus       341 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  420 (689)
                      |++++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++++|.+.+..   +..+++|+.|++++|.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            999999999777777899999999999999998 566666667999999999999998764   4568999999999998


Q ss_pred             ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccC
Q 040699          421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLS  500 (689)
Q Consensus       421 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls  500 (689)
                      +.+     +...++|+.|++++|.+... +..+  .++|+.|++++|.+++  +..+..+++|++|++++|.+++     
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-----  268 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-----  268 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-----
T ss_pred             ccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-----
Confidence            764     34567899999999999843 3322  3789999999999986  4678899999999999998873     


Q ss_pred             CCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCC
Q 040699          501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  580 (689)
Q Consensus       501 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  580 (689)
                            ..|..+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..
T Consensus       269 ------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          269 ------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             ------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             ------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence                  678889999999999999999996 5677788999999999999999 56777888999999999999998653


Q ss_pred             CCccccccccCcccccCCcCCCCCC
Q 040699          581 PEWEAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       581 ~~~~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                         +..++.+..+++.+||+.|+|.
T Consensus       341 ---~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          341 ---LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             ---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             ---hhhcCCCCEEEeeCCCCCChhH
Confidence               3467788999999999999763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.6e-31  Score=267.84  Aligned_cols=255  Identities=29%  Similarity=0.469  Sum_probs=212.2

Q ss_pred             CCcCEEEccCCcCcc--cCChhhhhcCCCceEEEccC-CcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCC
Q 040699          311 KRLGMLDISNNNFRG--HIPLEIGDILPSLHVFNISM-NALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNL  387 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  387 (689)
                      .+++.|++++|.+.+  .+|..+.. +++|+.|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+. .+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCC
Confidence            457777777777776  66665544 77888888884 777777788888888888888888888766666544 48888


Q ss_pred             CEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCC-CCCEEECCCCCCCCcCChhhcCCCCCcEEEcCC
Q 040699          388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCS-SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN  466 (689)
Q Consensus       388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  466 (689)
                      ++|++++|.+.+..+..+..+++|++|++++|++.+..|..+..++ +|++|++++|.+.+..|..+..+. |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            8888888888877778888888999999999988888888888887 899999999999888888888887 99999999


Q ss_pred             CccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEe
Q 040699          467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLD  546 (689)
Q Consensus       467 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  546 (689)
                      |.+++..|..|..+++|++|++++|.+++           . ++.+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF-----------D-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECC-----------B-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceee-----------e-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence            99998888899999999999999998762           3 33477889999999999999989999999999999999


Q ss_pred             CcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          547 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       547 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      +++|++++.+|.. ..+++|+.+++++|+..|..|
T Consensus       275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            9999999888886 778999999999998555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.9e-29  Score=257.05  Aligned_cols=288  Identities=18%  Similarity=0.198  Sum_probs=122.6

Q ss_pred             CCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEE
Q 040699          263 DLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN  342 (689)
Q Consensus       263 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  342 (689)
                      +++.++++++.+. .+|..   -.+.++.|++++|.+++..+..+.++++|++|++++|.+++..|..+ ..+++|+.|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCcc---CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEE
Confidence            3455555555444 23321   12344555555555554444444445555555555555442222222 2244444444


Q ss_pred             ccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc--cCcccccCCCCccEEeccCCc
Q 040699          343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG--HMFSRNFNLANLMSLQLEGNH  420 (689)
Q Consensus       343 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~  420 (689)
                      +++|.++. +|..+.  ++|++|++++|.+. .++...+.++++|++|++++|.+..  ..+..+..+++|++|++++|.
T Consensus       107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            44444442 222221  34444444444444 3333333344444444444444432  233334444444444444444


Q ss_pred             ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccC
Q 040699          421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLS  500 (689)
Q Consensus       421 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls  500 (689)
                      +... |..+.  ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++      
T Consensus       183 l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------  253 (330)
T 1xku_A          183 ITTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------  253 (330)
T ss_dssp             CCSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS------
T ss_pred             cccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc------
Confidence            4322 21111  34444444444444443444444444444444444444444444444444444444444443      


Q ss_pred             CCcccCCCchhhccccccceEeccCcccccCCcccccC------CCCCCEEeCcCCcCCC--CCchhccCCCCCCEEecc
Q 040699          501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN------LKHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVA  572 (689)
Q Consensus       501 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~  572 (689)
                            .+|..+..+++|++|++++|++++..+..|..      ...++.|++++|++..  ..|..|..+.+++.++++
T Consensus       254 ------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          254 ------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             ------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             ------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence                  33444444444444444444444433333322      1344444444444432  233344444444444444


Q ss_pred             CC
Q 040699          573 YN  574 (689)
Q Consensus       573 ~N  574 (689)
                      +|
T Consensus       328 ~N  329 (330)
T 1xku_A          328 NY  329 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.6e-30  Score=260.64  Aligned_cols=267  Identities=19%  Similarity=0.218  Sum_probs=134.9

Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEE
Q 040699          311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESL  390 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  390 (689)
                      +++++|++++|.++ .++...+..+++|+.|++++|.+++..|..|.++++|++|++++|++. .+|...+   ++|++|
T Consensus        54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEE
T ss_pred             CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEE
Confidence            34555555555554 232222333455555555555555444555555555555555555554 4444432   455555


Q ss_pred             EccCCcCCccCcccccCCCCccEEeccCCcccc--cccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCc
Q 040699          391 VLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIG--EISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH  468 (689)
Q Consensus       391 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  468 (689)
                      ++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+..+ +|++|++++|.+.+ +|..+.  ++|++|++++|.
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~  204 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNK  204 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCc
Confidence            555555555544455555555555555555532  334444444 55555555555553 333222  455555555555


Q ss_pred             cccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCc
Q 040699          469 LEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS  548 (689)
Q Consensus       469 l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  548 (689)
                      +++..+..+..+++|++|++++|.+++           ..+..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRM-----------IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCC-----------CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCc-----------CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            555555555555555555555555441           33334555555555555555555 344445555555555555


Q ss_pred             CCcCCCCCchhccC------CCCCCEEeccCCcCc--CCCCCccccccccCcccccCC
Q 040699          549 NNKLNGKIPHQLVE------LKTLEVFSVAYNNLS--GEIPEWEAQFATFNENSYEGN  598 (689)
Q Consensus       549 ~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~~~~~~~~~~~~n  598 (689)
                      +|++++..+..|..      ..+|+.+++++|++.  +..|..+..++.++.+++.+|
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            55555444444433      234555555555554  333444444445555554444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.4e-30  Score=260.72  Aligned_cols=288  Identities=19%  Similarity=0.218  Sum_probs=241.1

Q ss_pred             CCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEE
Q 040699          263 DLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFN  342 (689)
Q Consensus       263 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  342 (689)
                      .++.++++++.+. .+|..+   .++++.|++++|.+.+..+..+.++++|++|++++|.+++..|. .+..+++|+.|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEE
Confidence            5788888888876 566542   47899999999999988788899999999999999999844444 445588999999


Q ss_pred             ccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc--cCcccccCCCCccEEeccCCc
Q 040699          343 ISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG--HMFSRNFNLANLMSLQLEGNH  420 (689)
Q Consensus       343 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~  420 (689)
                      +++|.+.. +|..+.  ++|++|++++|++. .++...+.++++|++|++++|.+..  ..+..+..+ +|+.|++++|.
T Consensus       109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             CCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             CCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            99999884 444443  78999999999998 7887777889999999999999863  566677777 99999999999


Q ss_pred             ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccC
Q 040699          421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLS  500 (689)
Q Consensus       421 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls  500 (689)
                      +.+. |..+.  ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++      
T Consensus       184 l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------  254 (332)
T 2ft3_A          184 LTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS------  254 (332)
T ss_dssp             CSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC------
T ss_pred             CCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe------
Confidence            8764 44333  78999999999999888889999999999999999999888889999999999999999887      


Q ss_pred             CCcccCCCchhhccccccceEeccCcccccCCcccccC------CCCCCEEeCcCCcCC--CCCchhccCCCCCCEEecc
Q 040699          501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN------LKHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVA  572 (689)
Q Consensus       501 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~  572 (689)
                            .+|..+..+++|++|++++|++++..+..|..      ...|+.|++++|++.  ...|..|..+++|+.++++
T Consensus       255 ------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          255 ------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             ------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             ------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence                  67888999999999999999999887777765      367999999999998  6788889999999999999


Q ss_pred             CCc
Q 040699          573 YNN  575 (689)
Q Consensus       573 ~N~  575 (689)
                      +|.
T Consensus       329 ~n~  331 (332)
T 2ft3_A          329 NYK  331 (332)
T ss_dssp             ---
T ss_pred             ccc
Confidence            884

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.5e-29  Score=257.90  Aligned_cols=289  Identities=20%  Similarity=0.207  Sum_probs=239.9

Q ss_pred             CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699          287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD  366 (689)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  366 (689)
                      .+++.++++++.++.+. ..+  .+.++.|++++|.++ .++...+..+++|+.|++++|.+.+..|..|.++++|++|+
T Consensus        31 c~l~~l~~~~~~l~~lp-~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVP-KDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCCSCC-CSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCccccC-ccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            36889999988887643 222  368999999999998 56655556689999999999999988899999999999999


Q ss_pred             ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccc--cccccccCCCCCCEEECCCCC
Q 040699          367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIG--EISQSLSKCSSLEGLFLNNNN  444 (689)
Q Consensus       367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~  444 (689)
                      +++|+++ .+|...+   ++|++|++++|.+.+..+..+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.
T Consensus       107 Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            9999998 7887664   689999999999998888888999999999999999853  667788999999999999999


Q ss_pred             CCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEecc
Q 040699          445 LSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLS  524 (689)
Q Consensus       445 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~  524 (689)
                      +.. +|..+.  ++|++|++++|++++..+..|..+++|++|++++|.+++           ..+..+..+++|++|+++
T Consensus       183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----------VDNGSLANTPHLRELHLN  248 (330)
T ss_dssp             CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----------ECTTTGGGSTTCCEEECC
T ss_pred             ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-----------eChhhccCCCCCCEEECC
Confidence            984 555443  799999999999998888899999999999999998763           455678899999999999


Q ss_pred             CcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccC------CCCCCEEeccCCcCcC--CCCCccccccccCccccc
Q 040699          525 HNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLSG--EIPEWEAQFATFNENSYE  596 (689)
Q Consensus       525 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~~~~~~~~~~~  596 (689)
                      +|+++ .+|..+..+++|++|++++|++++..+..|..      .++++.+++++|++..  ..|..+..+..++.+++.
T Consensus       249 ~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             SSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             CCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence            99998 67788899999999999999999877777754      3788899999999864  445555566677777777


Q ss_pred             CC
Q 040699          597 GN  598 (689)
Q Consensus       597 ~n  598 (689)
                      +|
T Consensus       328 ~N  329 (330)
T 1xku_A          328 NY  329 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            66

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=269.37  Aligned_cols=292  Identities=23%  Similarity=0.278  Sum_probs=241.1

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV  391 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  391 (689)
                      ..+.++.++..++ .+|..+.   ++++.|++++|.+.+..+..|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            3567889998888 8887654   58999999999999888899999999999999999998 77777888899999999


Q ss_pred             ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEEcCCCccc
Q 040699          392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYIIMPNNHLE  470 (689)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n~l~  470 (689)
                      +++|.++.+....+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..|.++++|++|++++|.++
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            9999999988888999999999999999999888889999999999999995 555445568999999999999999998


Q ss_pred             cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699          471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN  550 (689)
Q Consensus       471 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  550 (689)
                      .. | .+..+++|++|++++|.+++           ..|..|.++++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus       199 ~~-~-~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          199 EI-P-NLTPLIKLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             SC-C-CCTTCSSCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             cc-c-ccCCCcccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            54 4 47889999999999998773           56788999999999999999999999999999999999999999


Q ss_pred             cCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCc
Q 040699          551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL  628 (689)
Q Consensus       551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~  628 (689)
                      ++++..+..+..+++|+.|++++|++.|.+.- |+..+.  .... ..+. .   ....|..|+..++..+...+.+..
T Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~--~~~~-~~~~-~---~~~~C~~P~~l~g~~l~~l~~~~~  337 (440)
T 3zyj_A          266 NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI--KDMA-PSNT-A---CCARCNTPPNLKGRYIGELDQNYF  337 (440)
T ss_dssp             CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHH--HTTS-CSSC-S---CCCBEEESTTTTTCBCC----CCS
T ss_pred             CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHH--Hhcc-ccCC-c---cccCCCChhHhcCccHhHhhhhhc
Confidence            99988888899999999999999999998763 222111  1100 0000 0   112577777777776666555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2.8e-29  Score=267.28  Aligned_cols=253  Identities=19%  Similarity=0.211  Sum_probs=225.8

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV  391 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  391 (689)
                      ....++.++..++ .+|..+.   ++++.|++++|.+.+..+..|.++++|+.|++++|.+. .++...+.++++|++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence            3567888888887 7887553   58999999999999888999999999999999999998 67777777899999999


Q ss_pred             ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEEcCCCccc
Q 040699          392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYIIMPNNHLE  470 (689)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n~l~  470 (689)
                      +++|.+....+..+..+++|++|++++|++....+..|..+++|++|++++| .+....+..|.++++|++|++++|+++
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            9999999988888999999999999999999888889999999999999995 555444567999999999999999998


Q ss_pred             cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCC
Q 040699          471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN  550 (689)
Q Consensus       471 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  550 (689)
                      +. | .+..+++|++|++++|.+++           ..|..|.++++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus       210 ~~-~-~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          210 DM-P-NLTPLVGLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             SC-C-CCTTCTTCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cc-c-cccccccccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            65 3 57889999999999998773           66888999999999999999999998999999999999999999


Q ss_pred             cCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       551 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      ++++..+..+..+++|+.|++++|++.|.+.-
T Consensus       277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          277 NLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99988888889999999999999999998764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-32  Score=294.73  Aligned_cols=359  Identities=17%  Similarity=0.145  Sum_probs=177.0

Q ss_pred             CCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeec---CcccccCCCCcceeeccCCcccccccccccCccCc
Q 040699          160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPI---SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN  236 (689)
Q Consensus       160 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  236 (689)
                      ++|++|++++|.++.......+..+++|++|++++|.++...   ....+..+++|+.|++++|.+              
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--------------   68 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL--------------   68 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC--------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC--------------
Confidence            457777777777763222212556777777777777665211   012234445555555555544              


Q ss_pred             cccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCC----CCcEEEeeCCCCCC----CCCCCCC
Q 040699          237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNT----KLRQLSLVNDSLAG----PFRLPIH  308 (689)
Q Consensus       237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~  308 (689)
                                                            .+..+..++..++    +|++|++++|.++.    ..+..+.
T Consensus        69 --------------------------------------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  110 (461)
T 1z7x_W           69 --------------------------------------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR  110 (461)
T ss_dssp             --------------------------------------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred             --------------------------------------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc
Confidence                                                  3322222222333    34444544444442    1233344


Q ss_pred             CCCCcCEEEccCCcCcccCChhhhh----cCCCceEEEccCCcCCccc----cccccCCCCCcEEeccCCcccccchhhh
Q 040699          309 SHKRLGMLDISNNNFRGHIPLEIGD----ILPSLHVFNISMNALDGSI----PSSFGNMNFLRILDLSNNQLTGEIPEHL  380 (689)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~  380 (689)
                      .+++|++|++++|.+++..+..+..    ..++|+.|++++|.+++..    +..+..+++|++|++++|.+.+..+..+
T Consensus       111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  190 (461)
T 1z7x_W          111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL  190 (461)
T ss_dssp             SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence            5555555555555554322222221    1234566666665555322    3344455566666666665543222222


Q ss_pred             hc----CCCCCCEEEccCCcCCccC----cccccCCCCccEEeccCCcccccc-----cccccCCCCCCEEECCCCCCCC
Q 040699          381 AV----GCVNLESLVLSNNSLKGHM----FSRNFNLANLMSLQLEGNHFIGEI-----SQSLSKCSSLEGLFLNNNNLSG  447 (689)
Q Consensus       381 ~~----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~i~~  447 (689)
                      ..    ..++|++|++++|.+.+..    +..+..+++|++|++++|.+....     +..+..+++|++|++++|.++.
T Consensus       191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            21    2345666666666555432    233344566666666666554321     1222245566666666665553


Q ss_pred             c----CChhhcCCCCCcEEEcCCCccccCCccccc-----CCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699          448 K----IPRWLGDLTRLQYIIMPNNHLEGPIPVEFC-----QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI  518 (689)
Q Consensus       448 ~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L  518 (689)
                      .    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.       -...++..+..+++|
T Consensus       271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-------CCSHFSSVLAQNRFL  343 (461)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-------GHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH-------HHHHHHHHHhhCCCc
Confidence            2    344455556666666666655433222222     124666666666655420       000123444555666


Q ss_pred             ceEeccCcccccCCcccccC-----CCCCCEEeCcCCcCCC----CCchhccCCCCCCEEeccCCcCc
Q 040699          519 QTLNLSHNDLTGSIPSTFSN-----LKHVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLS  577 (689)
Q Consensus       519 ~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~  577 (689)
                      ++|++++|.+++..+..+..     .++|++|++++|+++.    .+|..+..+++|+.|++++|+++
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            66666666655433332221     4566666666666653    44555555666666666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.2e-32  Score=295.21  Aligned_cols=160  Identities=23%  Similarity=0.180  Sum_probs=81.9

Q ss_pred             CCCccEEeccCCccccc----ccccccCCCCCCEEECCCCCCCCcCChhhc-----CCCCCcEEEcCCCccccC----Cc
Q 040699          408 LANLMSLQLEGNHFIGE----ISQSLSKCSSLEGLFLNNNNLSGKIPRWLG-----DLTRLQYIIMPNNHLEGP----IP  474 (689)
Q Consensus       408 l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~  474 (689)
                      +++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            44444444444444332    233444455555555555555432222221     124566666666655543    23


Q ss_pred             ccccCCCCCcEEeccccccccccccCCCcccCCCchhhc-----cccccceEeccCccccc----CCcccccCCCCCCEE
Q 040699          475 VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIG-----NLTRIQTLNLSHNDLTG----SIPSTFSNLKHVESL  545 (689)
Q Consensus       475 ~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L  545 (689)
                      ..+..+++|++|++++|.+++           ..+..+.     ..++|++|++++|.+++    .+|..+..+++|++|
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~-----------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLED-----------AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHH-----------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHhhCCCccEEEccCCcccc-----------ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            444555666666666665542           1111121     14567777777776664    455666666777777


Q ss_pred             eCcCCcCCCCCchhcc-----CCCCCCEEeccCCcCcC
Q 040699          546 DLSNNKLNGKIPHQLV-----ELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       546 ~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~  578 (689)
                      ++++|+++......+.     ....|+.|++.++.+..
T Consensus       404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             ECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            7777776643211111     13456777776665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.2e-28  Score=259.38  Aligned_cols=249  Identities=26%  Similarity=0.263  Sum_probs=218.0

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEec
Q 040699          288 KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDL  367 (689)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  367 (689)
                      ....++..+..++.+. ..+  .++++.|++++|.++ .++...+..+++|+.|++++|.+.+..+..|.++++|++|++
T Consensus        44 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLREVP-DGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSSCC-SCC--CTTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCcCC-CCC--CCCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4567788887777643 322  268999999999998 555555666899999999999999888899999999999999


Q ss_pred             cCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCc-ccccccccccCCCCCCEEECCCCCCC
Q 040699          368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH-FIGEISQSLSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       368 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~n~i~  446 (689)
                      ++|+++ .++...+..+++|++|++++|.+.......|..+++|++|++++|. +....+..|..+++|++|++++|.+.
T Consensus       120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            999998 8888888889999999999999999888899999999999999954 45455568999999999999999998


Q ss_pred             CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc
Q 040699          447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN  526 (689)
Q Consensus       447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  526 (689)
                       .+| .+..+++|++|++++|++++..|..|..+++|++|++++|.++.           ..+..|.++++|+.|+|++|
T Consensus       199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-----------IERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-----------ECTTSSTTCTTCCEEECTTS
T ss_pred             -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-----------EChhhhcCCCCCCEEECCCC
Confidence             445 47889999999999999999989999999999999999998873           56778999999999999999


Q ss_pred             ccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          527 DLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       527 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                      ++++..+..|..+++|+.|+|++|++..
T Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          266 NLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCCccChhHhccccCCCEEEcCCCCccC
Confidence            9998888889999999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.9e-29  Score=251.24  Aligned_cols=286  Identities=19%  Similarity=0.228  Sum_probs=213.8

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCccccc--chhhhhcCCCCCCEEE
Q 040699          314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE--IPEHLAVGCVNLESLV  391 (689)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~  391 (689)
                      +.++.+++.++ .+|..+   .++++.|++++|.+++..+..|.++++|++|++++|.+...  .+.... ++++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEE
Confidence            35666666665 566543   24677777777777755555677778888888888777621  133333 477888888


Q ss_pred             ccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccc
Q 040699          392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE  470 (689)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~  470 (689)
                      +++|.+... +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus        85 Ls~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           85 LSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CCSCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            888877653 3346778888888888888776554 57888889999999999888778888888999999999999887


Q ss_pred             c-CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcC
Q 040699          471 G-PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN  549 (689)
Q Consensus       471 ~-~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  549 (689)
                      + ..|..+..+++|++|++++|.+++           ..|..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence            6 577888899999999999988763           5577888999999999999999988887899999999999999


Q ss_pred             CcCCCCCchhccCC-CCCCEEeccCCcCcCCCCC-cccc-ccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCC
Q 040699          550 NKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPE-WEAQ-FATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNE  623 (689)
Q Consensus       550 N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~-~~~~-~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~  623 (689)
                      |++++..|..+..+ ++|+.|++++|++.|.++. ++.. +..........+..       .|..|....|.++.++
T Consensus       233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~~~~  302 (306)
T 2z66_A          233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPVLSL  302 (306)
T ss_dssp             SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBGGGC
T ss_pred             CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCceeeee
Confidence            99999899888888 4999999999999987652 1111 12222333333333       5666776666655444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.3e-29  Score=255.69  Aligned_cols=281  Identities=17%  Similarity=0.144  Sum_probs=218.2

Q ss_pred             CCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEE
Q 040699          286 NTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRIL  365 (689)
Q Consensus       286 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  365 (689)
                      ++.....+.+++.++.+.. .+  .++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3444455666666665422 22  247888888888887 5555445557888888888888887777788888899999


Q ss_pred             eccCCcccccchhhhhcCCCCCCEEEccCCcCCccCc-ccccCCCCccEEeccCC-cccccccccccCCCCCCEEECCCC
Q 040699          366 DLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF-SRNFNLANLMSLQLEGN-HFIGEISQSLSKCSSLEGLFLNNN  443 (689)
Q Consensus       366 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~L~~n  443 (689)
                      ++++|+++ .++...+.++++|++|++++|.+.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|
T Consensus       106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            99999888 7777777778899999999998887666 57788899999999988 466666778888999999999999


Q ss_pred             CCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCch---hhccccccce
Q 040699          444 NLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPP---KIGNLTRIQT  520 (689)
Q Consensus       444 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~---~~~~l~~L~~  520 (689)
                      .+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++           ..+.   .....+.++.
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----------~~~~~l~~~~~~~~l~~  253 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-----------FHFSELSTGETNSLIKK  253 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-----------CCCC------CCCCCCE
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-----------ccccccccccccchhhc
Confidence            9988778889899999999999999875544445668899999999998763           1111   1234567788


Q ss_pred             EeccCccccc----CCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          521 LNLSHNDLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       521 L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      ++++++.+++    .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|++.|.+|.
T Consensus       254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            8888887765    3677889999999999999999955444568899999999999999998873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=8.5e-28  Score=255.85  Aligned_cols=248  Identities=23%  Similarity=0.230  Sum_probs=161.4

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEecc
Q 040699          289 LRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLS  368 (689)
Q Consensus       289 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  368 (689)
                      ...++..+..++.+. ..+  .+++++|++++|.+++ ++...+..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccC-CCC--CCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            345555555555432 222  2466777777777763 333333446677777777777776666677777777777777


Q ss_pred             CCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCC-cccccccccccCCCCCCEEECCCCCCCC
Q 040699          369 NNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGN-HFIGEISQSLSKCSSLEGLFLNNNNLSG  447 (689)
Q Consensus       369 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~L~~n~i~~  447 (689)
                      +|+++ .++...+.++++|++|++++|.+..+....+..+++|+.|++++| .+....+..|..+++|++|++++|.+.+
T Consensus       132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            77776 666666666777777777777777666666677777777777763 3333344456677777777777777663


Q ss_pred             cCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcc
Q 040699          448 KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHND  527 (689)
Q Consensus       448 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  527 (689)
                       +| .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++           ..+..|.++++|+.|+|++|+
T Consensus       211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-----------IERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSC
T ss_pred             -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-----------ECHHHhcCCCCCCEEECCCCc
Confidence             23 35666777777777777776667777777777777777766652           445566677777777777777


Q ss_pred             cccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          528 LTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       528 l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                      +++..+..|..+++|++|+|++|++..
T Consensus       278 l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          278 LSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCccChHHhccccCCCEEEccCCCcCC
Confidence            776666666777777777777776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8e-29  Score=254.90  Aligned_cols=279  Identities=20%  Similarity=0.194  Sum_probs=239.9

Q ss_pred             CCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCC
Q 040699          309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE  388 (689)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  388 (689)
                      .++.....+.+++.++ .+|..++   ++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|+
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  103 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE  103 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCC
Confidence            3455667899999998 8887654   58999999999999877778999999999999999998 66666667799999


Q ss_pred             EEEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEEcCC
Q 040699          389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYIIMPN  466 (689)
Q Consensus       389 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~  466 (689)
                      +|++++|.+++.....+.++++|++|++++|++....+ ..+..+++|++|++++| .+.+..+..|.++++|++|++++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            99999999998887778999999999999999986655 57899999999999999 57766678899999999999999


Q ss_pred             CccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh-hccccccceEeccCcccccCCccccc---CCCCC
Q 040699          467 NHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK-IGNLTRIQTLNLSHNDLTGSIPSTFS---NLKHV  542 (689)
Q Consensus       467 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L  542 (689)
                      |++++..|..+..+++|++|++++|.++            .+|.. +..+++|+.|++++|.+++..+..+.   ....+
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l  251 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHI------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI  251 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCST------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccc------------cchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence            9999888999999999999999999876            34443 55689999999999999976655443   46789


Q ss_pred             CEEeCcCCcCCC----CCchhccCCCCCCEEeccCCcCcCCCCCc-cccccccCcccccCCcCCCCCC
Q 040699          543 ESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSGEIPEW-EAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       543 ~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      +.++++++.+++    .+|..+..+++|+.|++++|.++ .+|.. +..++.++.+++.+|++.|+|+
T Consensus       252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999999999886    36778899999999999999999 45544 5788999999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=3.1e-28  Score=242.54  Aligned_cols=267  Identities=20%  Similarity=0.228  Sum_probs=222.0

Q ss_pred             ceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699          338 LHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE  417 (689)
Q Consensus       338 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  417 (689)
                      -+.++.+++.++. +|..+  .++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            3678888888874 45433  468999999999998 6777777779999999999999999888899999999999999


Q ss_pred             CCc-ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699          418 GNH-FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  496 (689)
Q Consensus       418 ~n~-~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  496 (689)
                      +|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.++. 
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  167 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-  167 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-
Confidence            997 777778889999999999999999998888899999999999999999998888889999999999999998872 


Q ss_pred             cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcC
Q 040699          497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  576 (689)
Q Consensus       497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  576 (689)
                                ..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       168 ----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          168 ----------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             ----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ----------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence                      4445688999999999999999988899999999999999999999988888899999999999999999


Q ss_pred             cCCCCCccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 040699          577 SGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN  627 (689)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~  627 (689)
                      .|.++... .+..+.......+..       .|..|+...+..+......+
T Consensus       238 ~c~~~~~~-~~~~l~~~~~~~~~~-------~c~~p~~l~g~~l~~l~~~~  280 (285)
T 1ozn_A          238 VCDCRARP-LWAWLQKFRGSSSEV-------PCSLPQRLAGRDLKRLAAND  280 (285)
T ss_dssp             ECSGGGHH-HHHHHHHCCSEECCC-------BEEESGGGTTCBGGGSCGGG
T ss_pred             cCCCCcHH-HHHHHHhcccccCcc-------ccCCchHhCCcChhhcCHHH
Confidence            98876421 223333333444444       45566666666555554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.6e-28  Score=244.11  Aligned_cols=279  Identities=23%  Similarity=0.253  Sum_probs=211.2

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCcc--ccccccCCCCCcEEec
Q 040699          290 RQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGS--IPSSFGNMNFLRILDL  367 (689)
Q Consensus       290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l  367 (689)
                      +.++.+++.++.+.. .+  .+++++|++++|.++ .+|..++..+++|+.|++++|.+...  .+..+.++++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            345555555544322 11  246777777777776 66666656677777888777777633  2556667788888888


Q ss_pred             cCCcccccchhhhhcCCCCCCEEEccCCcCCccCc-ccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699          368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMF-SRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       368 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  446 (689)
                      ++|.+. .++.. +..+++|++|++++|.+.+... ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        86 s~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            888877 56655 3458888888888888877655 56778888899999988888888888888899999999999887


Q ss_pred             C-cCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccC
Q 040699          447 G-KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSH  525 (689)
Q Consensus       447 ~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~  525 (689)
                      + ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++           ..+..+..+++|+.|++++
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-----------LDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-----------CCSGGGTTCTTCCEEECTT
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-----------cChhhccCcccCCEeECCC
Confidence            5 577888889999999999999988888889999999999999998763           4455688899999999999


Q ss_pred             cccccCCcccccCC-CCCCEEeCcCCcCCCCCc--hhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699          526 NDLTGSIPSTFSNL-KHVESLDLSNNKLNGKIP--HQLVELKTLEVFSVAYNNLSGEIPEWEA  585 (689)
Q Consensus       526 n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~  585 (689)
                      |++++..|..+..+ ++|++|++++|++++..+  .....+...+.+.+..+.+.|..|..+.
T Consensus       233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence            99998888889888 499999999999986532  1122233445566777888888887553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.9e-27  Score=236.80  Aligned_cols=254  Identities=21%  Similarity=0.221  Sum_probs=216.9

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699          314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS  393 (689)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  393 (689)
                      ++++.+++.++ .+|..+   .++++.|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            67889998887 777654   468999999999999887888999999999999999998 5655566679999999999


Q ss_pred             CCc-CCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccC
Q 040699          394 NNS-LKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP  472 (689)
Q Consensus       394 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~  472 (689)
                      +|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++++.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            997 8888788899999999999999999988888899999999999999999977777899999999999999999988


Q ss_pred             CcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcC
Q 040699          473 IPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL  552 (689)
Q Consensus       473 ~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  552 (689)
                      .+..|..+++|++|++++|.+++           ..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CHHHhcCccccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            77789999999999999998763           5678899999999999999999988778899999999999999999


Q ss_pred             CCCCchhccCCCCCCEEeccCCcCcCCCCCcc
Q 040699          553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWE  584 (689)
Q Consensus       553 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  584 (689)
                      ....+.. .....++.+....+.+.|..|+.+
T Consensus       238 ~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          238 VCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             ECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             cCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence            8654421 111234445577888888888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=4.8e-30  Score=284.03  Aligned_cols=411  Identities=15%  Similarity=0.066  Sum_probs=218.2

Q ss_pred             hhhcCCCCCCEEECCCCCC--------------CCcchhHHhhcCCCCcEEECCCCcCCcccCCCCCCC-CC-CCCeeeC
Q 040699           25 QELHSFTNLEYLSLDFSSL--------------HISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPH-FK-SLEHLDM   88 (689)
Q Consensus        25 ~~~~~~~~L~~L~L~~~~i--------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~-~L~~L~L   88 (689)
                      ..+..+++|++|+++++..              ....+..+...+++|++|+|++|.+++.... .+.. ++ +|++|++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEEC
Confidence            3456677777777755421              1111233443478888888888776543221 2333 23 3888888


Q ss_pred             CCCccccCCccchhhhhcCCCccEEECCCCCC-CCCCCccCccccCCCCCCCEEeCCCCcCcc----CCCccccCCCCCc
Q 040699           89 SSTRIALNTSFLQIIGESMPSLKYLSLSNSTR-GTNSSRILDQGLCSLMHLQELYMADNDLRG----SLPWCLANMTSLR  163 (689)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~-~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~  163 (689)
                      ++|.-. .......+...+++|++|+|++|.. +....+++. ....+++|++|++++|.+++    .++..+..+++|+
T Consensus       146 ~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          146 DKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             ESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             cCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            777520 1212222333478888888888732 221111221 34567888888888887762    2334456778888


Q ss_pred             EEEccceeeeeecCcccccCCCCCCEEeccCCccee--ecCcccccCCCCcceeeccCCcccccccccccCccCccccce
Q 040699          164 ILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRI--PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSR  241 (689)
Q Consensus       164 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  241 (689)
                      +|++++|.+. .++. .+..+++|++|+++......  ......+..+++|+.+++.++.                    
T Consensus       224 ~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------------------  281 (592)
T 3ogk_B          224 SVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--------------------  281 (592)
T ss_dssp             EEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--------------------
T ss_pred             EEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--------------------
Confidence            8888888776 4554 57778888888887532110  0011122233333333332210                    


Q ss_pred             EeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCC
Q 040699          242 LSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNN  321 (689)
Q Consensus       242 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  321 (689)
                               ...+|..+..+++|+.|++++|.+.+.....+                        +..+++|++|+++ +
T Consensus       282 ---------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~------------------------~~~~~~L~~L~L~-~  327 (592)
T 3ogk_B          282 ---------PNEMPILFPFAAQIRKLDLLYALLETEDHCTL------------------------IQKCPNLEVLETR-N  327 (592)
T ss_dssp             ---------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH------------------------HTTCTTCCEEEEE-G
T ss_pred             ---------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH------------------------HHhCcCCCEEecc-C
Confidence                     01122223333444444444444332222122                        2344555555555 2


Q ss_pred             cCcccCChhhhhcCCCceEEEccC-----------CcCCcc-ccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699          322 NFRGHIPLEIGDILPSLHVFNISM-----------NALDGS-IPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES  389 (689)
Q Consensus       322 ~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  389 (689)
                      .+.+.....+...+++|++|++++           +.+++. .+..+..+++|++|+++.+.+++..+..+...+++|+.
T Consensus       328 ~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~  407 (592)
T 3ogk_B          328 VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD  407 (592)
T ss_dssp             GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCE
T ss_pred             ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcE
Confidence            222222223333455666666662           333322 11223446667777776666665555555555667777


Q ss_pred             EEcc----CCcCCccC-----cccccCCCCccEEeccCCc--ccccccccc-cCCCCCCEEECCCCCCCC-cCChhhcCC
Q 040699          390 LVLS----NNSLKGHM-----FSRNFNLANLMSLQLEGNH--FIGEISQSL-SKCSSLEGLFLNNNNLSG-KIPRWLGDL  456 (689)
Q Consensus       390 L~l~----~n~l~~~~-----~~~~~~l~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~L~~n~i~~-~~~~~l~~l  456 (689)
                      |+++    .|.+++..     ...+.++++|+.|++++|.  +++.....+ ..+++|++|++++|.+++ ..+..+.++
T Consensus       408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  487 (592)
T 3ogk_B          408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC  487 (592)
T ss_dssp             EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred             EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence            7774    44555421     1123456777777775433  333333333 336777777777777764 334455667


Q ss_pred             CCCcEEEcCCCccccC-CcccccCCCCCcEEeccccccc
Q 040699          457 TRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       457 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~  494 (689)
                      ++|++|++++|.+++. .+.....+++|++|++++|+++
T Consensus       488 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             TTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             cccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            7788888877776543 2333456777888888877765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=9.5e-30  Score=281.69  Aligned_cols=298  Identities=10%  Similarity=0.053  Sum_probs=169.6

Q ss_pred             CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCC---CCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCc
Q 040699          262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLA---GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSL  338 (689)
Q Consensus       262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  338 (689)
                      ++|+.|++++|.+.+ ++. .+..+++|++|++......   ......+..+++|+.++++++... .+|. ....+++|
T Consensus       220 ~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L  295 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQI  295 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGC
T ss_pred             CCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCC
Confidence            444444444444432 222 2345555555555432111   112234455666777776664332 3333 23335677


Q ss_pred             eEEEccCCcCCcccc-ccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC-----------CcCCccCccc-c
Q 040699          339 HVFNISMNALDGSIP-SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN-----------NSLKGHMFSR-N  405 (689)
Q Consensus       339 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~~~~-~  405 (689)
                      +.|++++|.+++... ..+..+++|++|+++ +.+.+.........+++|++|++++           +.+++..... .
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~  374 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA  374 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence            777777776543322 335667777777777 4444344444445577777777772           4444332222 2


Q ss_pred             cCCCCccEEeccCCcccccccccccC-CCCCCEEECC----CCCCCCc-----CChhhcCCCCCcEEEcCCCc--cccCC
Q 040699          406 FNLANLMSLQLEGNHFIGEISQSLSK-CSSLEGLFLN----NNNLSGK-----IPRWLGDLTRLQYIIMPNNH--LEGPI  473 (689)
Q Consensus       406 ~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~L~----~n~i~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~  473 (689)
                      ..+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++.     ++..+.++++|++|++++|.  +++..
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            34677777777777766555555544 7778888875    5566542     33345667788888886543  44333


Q ss_pred             cccc-cCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccC-CcccccCCCCCCEEeCcCCc
Q 040699          474 PVEF-CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS-IPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       474 ~~~~-~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~  551 (689)
                      +..+ ..+++|++|++++|.+++.          .++..+.++++|++|++++|.+++. .+.....+++|++|++++|+
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDE----------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHH----------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHhCccceEeeccCCCCCHH----------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            3333 3467888888888776521          2344456778888888888887643 33344567888888888888


Q ss_pred             CCCCCchhc-cCCCCCCEEeccCC
Q 040699          552 LNGKIPHQL-VELKTLEVFSVAYN  574 (689)
Q Consensus       552 l~~~~~~~~-~~l~~L~~L~l~~N  574 (689)
                      ++......+ ..++.+....+..+
T Consensus       525 it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          525 ASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CCHHHHHHHHHhCCCcEEEEecCc
Confidence            775533333 24566655555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1e-26  Score=235.54  Aligned_cols=225  Identities=20%  Similarity=0.293  Sum_probs=149.3

Q ss_pred             CCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEE
Q 040699          335 LPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL  414 (689)
Q Consensus       335 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  414 (689)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+. ..+..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            467888888888887 56666777888888888888887 7776554 3778888888888777 345567777778888


Q ss_pred             eccCCcccccccccccC---------CCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699          415 QLEGNHFIGEISQSLSK---------CSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI  485 (689)
Q Consensus       415 ~L~~n~~~~~~~~~~~~---------l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  485 (689)
                      ++++|.+.+..|..+..         +++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            88777766666655443         666666666666665 555556666666666666666663 3445666666666


Q ss_pred             EeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCC
Q 040699          486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT  565 (689)
Q Consensus       486 L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  565 (689)
                      |++++|++.+           .+|..+..+++|++|++++|++.+.+|..+.++++|++|++++|++.+.+|..+..+++
T Consensus       234 L~Ls~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          234 LDLRGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             EECTTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             EECcCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            6666655442           45555666666666666666666666666666666666666666666666666666666


Q ss_pred             CCEEeccCCcC
Q 040699          566 LEVFSVAYNNL  576 (689)
Q Consensus       566 L~~L~l~~N~l  576 (689)
                      |+.+++..+.+
T Consensus       303 L~~l~l~~~~~  313 (328)
T 4fcg_A          303 NCIILVPPHLQ  313 (328)
T ss_dssp             TCEEECCGGGS
T ss_pred             ceEEeCCHHHH
Confidence            66666665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.4e-28  Score=245.81  Aligned_cols=260  Identities=19%  Similarity=0.222  Sum_probs=197.8

Q ss_pred             cCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEc
Q 040699          313 LGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL  392 (689)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  392 (689)
                      ++..+++.+.+. ..+...+..+++|+.|++++|.+.+..|..|.++++|++|++++|.+.+..+   +..+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            444566666665 4445555556788888888888887777788888888888888888874433   556888888888


Q ss_pred             cCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccC
Q 040699          393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP  472 (689)
Q Consensus       393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~  472 (689)
                      ++|.+++..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            888877543     347888888888888766544   357789999999988877777888888999999999988877


Q ss_pred             Ccccc-cCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699          473 IPVEF-CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       473 ~~~~~-~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  551 (689)
                      .+..+ ..+++|++|++++|.++.            ++. ...+++|++|++++|++++. |..+..+++|++|++++|+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~------------~~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYD------------VKG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCE------------EEC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred             cHHHHhhccCcCCEEECCCCcCcc------------ccc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence            66666 468889999999888762            222 23478899999999999855 4448888999999999999


Q ss_pred             CCCCCchhccCCCCCCEEeccCCcCc-CCCCCccccccccCcccccCCc
Q 040699          552 LNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWEAQFATFNENSYEGNT  599 (689)
Q Consensus       552 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~~~n~  599 (689)
                      ++ .+|..+..+++|+.|++++|++. +..|.++..++.++.+.+.+++
T Consensus       226 l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             CC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            98 46777888899999999999988 4456666666666666666443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=5.6e-26  Score=230.16  Aligned_cols=235  Identities=21%  Similarity=0.234  Sum_probs=159.5

Q ss_pred             CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699          287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD  366 (689)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  366 (689)
                      ++++.|+++++.+.. .+..+..+++|++|++++|.++ .+|..+.. +++|+.|++++|.+. .+|..+.++++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            455555555555552 2333444555555555555554 44443322 445555555555554 3444455555555555


Q ss_pred             ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699          367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  446 (689)
                      +++|++.+.+|..+..       ..         ....+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus       157 L~~n~~~~~~p~~~~~-------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAS-------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEETTCCCCCSCSEE-------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCCccccChhHhh-------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            5554444344432211       00         0112345888888888888877 56777888889999999998888


Q ss_pred             CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc
Q 040699          447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN  526 (689)
Q Consensus       447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  526 (689)
                      + +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+           .+|..+..+++|++|++++|
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----------~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-----------TLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-----------BCCTTGGGCTTCCEEECTTC
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-----------hcchhhhcCCCCCEEeCCCC
Confidence            4 56678888899999999988888888888888999999888887653           77888888999999999999


Q ss_pred             ccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          527 DLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       527 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                      ++.+.+|..++++++|+.+++..+.+..
T Consensus       288 ~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          288 VNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             TTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CchhhccHHHhhccCceEEeCCHHHHHH
Confidence            9888899999999999999988776653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.2e-27  Score=241.21  Aligned_cols=246  Identities=24%  Similarity=0.243  Sum_probs=146.4

Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCC-cccccccc-------CCCCCcEEeccCCcccccchhhhh-
Q 040699          311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALD-GSIPSSFG-------NMNFLRILDLSNNQLTGEIPEHLA-  381 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~-  381 (689)
                      ++|+.+++++|.+  .+|..+...   |+.|++++|.+. ...|..+.       ++++|++|++++|++++.+|..++ 
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            4555566666665  455544432   556666666553 22333332       456666666666666655555543 


Q ss_pred             cCCCCCCEEEccCCcCCccCcccccCC-----CCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCc--CChhh-
Q 040699          382 VGCVNLESLVLSNNSLKGHMFSRNFNL-----ANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGK--IPRWL-  453 (689)
Q Consensus       382 ~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~l-  453 (689)
                      ..+++|++|++++|.+.+. +..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+.  .+..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            4466666666666666655 4444444     6666666666666666656666666777777776665533  22222 


Q ss_pred             -cCCCCCcEEEcCCCcccc---CCcccccCCCCCcEEeccccccccccccCCCcccCCCc-hhhccccccceEeccCccc
Q 040699          454 -GDLTRLQYIIMPNNHLEG---PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDL  528 (689)
Q Consensus       454 -~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l  528 (689)
                       ..+++|++|++++|++++   .....+..+++|++|++++|.+++           ..| ..+..+++|++|++++|++
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-----------AAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-----------SCCCSCCCCCTTCCEEECTTSCC
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-----------ccchhhhhhcCCCCEEECCCCcc
Confidence             566677777777776662   122334456677777777766652           222 3345566777777777777


Q ss_pred             ccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699          529 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       529 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  578 (689)
                      + .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          266 K-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             S-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             C-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6 4455444  6777777777777755 44 6667777777777777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=247.51  Aligned_cols=244  Identities=22%  Similarity=0.244  Sum_probs=195.2

Q ss_pred             CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699          336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ  415 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (689)
                      ++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|   +..+++|++|++++|.+.+..+     .++|+.|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            478888888888887777888888888888888888875444   5568888888888888876443     37899999


Q ss_pred             ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCccccc-CCCCCcEEeccccccc
Q 040699          416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFC-QLDLLQILDISDNNIS  494 (689)
Q Consensus       416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~  494 (689)
                      +++|.+.+..+.   .+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            999988776554   457899999999999988888888899999999999999887777776 7899999999999887


Q ss_pred             cccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699          495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  574 (689)
Q Consensus       495 ~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  574 (689)
                      +            +| ....+++|+.|+|++|.+++.+| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus       183 ~------------~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          183 D------------VK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             E------------EE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred             c------------cc-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence            3            22 23358899999999999996554 48889999999999999985 6777888899999999999


Q ss_pred             cCcC-CCCCccccccccCccccc-------CCcCCCCCC
Q 040699          575 NLSG-EIPEWEAQFATFNENSYE-------GNTFLCGLP  605 (689)
Q Consensus       575 ~l~~-~~~~~~~~~~~~~~~~~~-------~n~~~c~~~  605 (689)
                      ++.| .+|.++..+..+..+...       ++++.|.|+
T Consensus       248 ~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            9984 445555556556555554       778888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-27  Score=240.36  Aligned_cols=244  Identities=20%  Similarity=0.225  Sum_probs=183.7

Q ss_pred             CCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCC
Q 040699          309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE  388 (689)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  388 (689)
                      .+++|++|++++|.++ .++...+..+++|+.|++++|.+.+..+  +..+++|++|++++|+++ .++.     .++|+
T Consensus        32 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L~  102 (317)
T 3o53_A           32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE  102 (317)
T ss_dssp             TGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred             cCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccC-----CCCcC
Confidence            3456666666666666 3443334446677777777777664433  777778888888888776 4442     46788


Q ss_pred             EEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhh-cCCCCCcEEEcCCC
Q 040699          389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWL-GDLTRLQYIIMPNN  467 (689)
Q Consensus       389 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~l~~n  467 (689)
                      +|++++|.+.+..+.   .+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus       103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            888888887765544   35778888888888887777788888888888888888887666665 46788999999999


Q ss_pred             ccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeC
Q 040699          468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL  547 (689)
Q Consensus       468 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  547 (689)
                      .+++..+  ...+++|++|++++|.++            .+|..+..+++|+.|++++|+++ .+|..+..+++|++|++
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~------------~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLA------------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCC------------EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred             cCccccc--ccccccCCEEECCCCcCC------------cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence            8886522  334889999999999887            45566888999999999999998 46777889999999999


Q ss_pred             cCCcCC-CCCchhccCCCCCCEEeccCC-cCcCC
Q 040699          548 SNNKLN-GKIPHQLVELKTLEVFSVAYN-NLSGE  579 (689)
Q Consensus       548 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~  579 (689)
                      ++|++. +..|..+..+++|+.+++.+| .+.+.
T Consensus       245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            999998 678888888999999998854 34443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=5.5e-25  Score=217.89  Aligned_cols=209  Identities=24%  Similarity=0.251  Sum_probs=153.4

Q ss_pred             CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699          361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL  440 (689)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  440 (689)
                      +|++|++++|.++ .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4566666666655 444444444666666666666666655556666777777777777776666667777777777777


Q ss_pred             CCCCCCCcCChhhcCCCCCcEEEcCCCccccC-CcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccc
Q 040699          441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQ  519 (689)
Q Consensus       441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~  519 (689)
                      ++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++           ..+..+..+++|+
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~  176 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----------IYCTDLRVLHQMP  176 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-----------ECGGGGHHHHTCT
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-----------CCHHHhhhhhhcc
Confidence            77777765555677778888888888887753 47778888888888888887763           3445666666666


Q ss_pred             ----eEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          520 ----TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       520 ----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                          +|++++|.+++..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus       177 ~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          177 LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence                8999999998766666554 4899999999999987777788899999999999999998874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.3e-24  Score=236.58  Aligned_cols=269  Identities=23%  Similarity=0.276  Sum_probs=216.4

Q ss_pred             CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699          262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF  341 (689)
Q Consensus       262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  341 (689)
                      .+++.++++++.+. .+|..+   .++|+.|++++|.++.+..    .+++|++|++++|+++ .+|.    .+++|+.|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence            35888999998887 667643   2789999999999886443    5689999999999988 6776    46899999


Q ss_pred             EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699          342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF  421 (689)
Q Consensus       342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  421 (689)
                      ++++|.+++. |.   .+++|+.|++++|+++ .+|..    +++|++|++++|.+.++..    .+++|+.|++++|.+
T Consensus       107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL  173 (622)
T ss_dssp             EECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             ECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCC
Confidence            9999998854 43   5688999999999998 67653    5899999999999887543    367899999999998


Q ss_pred             cccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCC
Q 040699          422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSC  501 (689)
Q Consensus       422 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~  501 (689)
                      +.. |   ..+++|+.|++++|.+.+ +|.   .+++|+.|++++|.++. +|.   .+++|++|++++|.++       
T Consensus       174 ~~l-~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~-------  234 (622)
T 3g06_A          174 TSL-P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLT-------  234 (622)
T ss_dssp             SCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-------
T ss_pred             CCC-c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccC-------
Confidence            764 4   457899999999999984 443   24789999999999984 343   2478999999999887       


Q ss_pred             CcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                           .+|   ..+++|+.|++++|+++. +|.   .+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus       235 -----~lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          235 -----SLP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             -----CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             -----cCC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence                 345   456889999999999985 444   6789999999999999 668889999999999999999998877


Q ss_pred             Ccccccc
Q 040699          582 EWEAQFA  588 (689)
Q Consensus       582 ~~~~~~~  588 (689)
                      ..+..+.
T Consensus       302 ~~l~~L~  308 (622)
T 3g06_A          302 QALREIT  308 (622)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            6554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.1e-28  Score=273.37  Aligned_cols=430  Identities=14%  Similarity=0.073  Sum_probs=228.6

Q ss_pred             hhhcCCCCCCEEECCCCCCCC-c-------------chhHHhhcCCCCcEEECCCCcCCcccCCCCCC-CCCCCCeeeCC
Q 040699           25 QELHSFTNLEYLSLDFSSLHI-S-------------LLQSIASIFPSLKNLSMSGCEVNGLVRGQGFP-HFKSLEHLDMS   89 (689)
Q Consensus        25 ~~~~~~~~L~~L~L~~~~i~~-~-------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~   89 (689)
                      ..+..+++|++|+++++.... .             .+..+...+++|++|++++|.+++.... .+. .+++|++|+++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~  138 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLS  138 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEE
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCC
Confidence            456677788888887764211 0             0233444478888888888877644332 232 57788888888


Q ss_pred             CC-ccccCCccchhhhhcCCCccEEECCCCC-CCCCCCccCccccCCCCCCCEEeCCCCc--Ccc-CCCccccCCCCCcE
Q 040699           90 ST-RIALNTSFLQIIGESMPSLKYLSLSNST-RGTNSSRILDQGLCSLMHLQELYMADND--LRG-SLPWCLANMTSLRI  164 (689)
Q Consensus        90 ~~-~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-~~~~~~~~~~~~l~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~  164 (689)
                      +| .+  .......+..++++|++|++++|. .+.....++. ....+++|++|++++|.  ++. .++..+..+++|++
T Consensus       139 ~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~  215 (594)
T 2p1m_B          139 SCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH-FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS  215 (594)
T ss_dssp             SCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG-SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred             CcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH-HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence            87 44  222233344348888888888873 2221112221 34477888888888886  221 11122345688888


Q ss_pred             EEccce-eeeeecCcccccCCCCCCEEeccCCcc-------eeecCcccccCCCCcceee-ccCCcccccccccccCccC
Q 040699          165 LYVSYN-QLTGSISSSPLVHLTSIEKLYLSNNHF-------RIPISLEPLFNHSRLKIFY-ADNNELNAEITQSHSLTAP  235 (689)
Q Consensus       165 L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~-l~~n~~~~~~~~~~~~~~~  235 (689)
                      |++++| .+. .++. .+..+++|++|+++.+..       .+ .. ..+.++++|+.+. +....              
T Consensus       216 L~L~~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~-~~l~~~~~L~~Ls~~~~~~--------------  277 (594)
T 2p1m_B          216 LKLNRAVPLE-KLAT-LLQRAPQLEELGTGGYTAEVRPDVYSG-LS-VALSGCKELRCLSGFWDAV--------------  277 (594)
T ss_dssp             EECCTTSCHH-HHHH-HHHHCTTCSEEECSBCCCCCCHHHHHH-HH-HHHHTCTTCCEEECCBTCC--------------
T ss_pred             EecCCCCcHH-HHHH-HHhcCCcceEcccccccCccchhhHHH-HH-HHHhcCCCcccccCCcccc--------------
Confidence            888887 343 3444 567788888888765531       10 00 1234444444441 11100              


Q ss_pred             ccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCE
Q 040699          236 NFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGM  315 (689)
Q Consensus       236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  315 (689)
                                     ...++..+..+++|+.|++++|.+.+.....+...+                        ++|++
T Consensus       278 ---------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~------------------------~~L~~  318 (594)
T 2p1m_B          278 ---------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC------------------------PKLQR  318 (594)
T ss_dssp             ---------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC------------------------TTCCE
T ss_pred             ---------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC------------------------CCcCE
Confidence                           011122222344555555555544322222222334                        44444


Q ss_pred             EEccCCcCcccCChhhhhcCCCceEEEccC---------CcCCccccccc-cCCCCCcEEeccCCcccccchhhhhcCCC
Q 040699          316 LDISNNNFRGHIPLEIGDILPSLHVFNISM---------NALDGSIPSSF-GNMNFLRILDLSNNQLTGEIPEHLAVGCV  385 (689)
Q Consensus       316 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  385 (689)
                      |++++| +.+.....+...+++|+.|++.+         +.+++.....+ .++++|+.|++..+.+++.....+...++
T Consensus       319 L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~  397 (594)
T 2p1m_B          319 LWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP  397 (594)
T ss_dssp             EEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT
T ss_pred             EeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC
Confidence            444444 22111122223345555555522         23332222222 23566666666666666544444444466


Q ss_pred             CCCEEEcc--C----CcCCccCc-----ccccCCCCccEEeccCCcccccccccccC-CCCCCEEECCCCCCCCcCChhh
Q 040699          386 NLESLVLS--N----NSLKGHMF-----SRNFNLANLMSLQLEGNHFIGEISQSLSK-CSSLEGLFLNNNNLSGKIPRWL  453 (689)
Q Consensus       386 ~L~~L~l~--~----n~l~~~~~-----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~l  453 (689)
                      +|+.|+++  +    +.+++...     ..+..+++|+.|++++ .++......+.. +++|++|++++|.+++..+..+
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l  476 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV  476 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred             CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence            77777776  2    33432211     1134567777777766 444443344443 7778888888777764444443


Q ss_pred             -cCCCCCcEEEcCCCccccCCcc-cccCCCCCcEEeccccccccccccCCCcccCCCchhh-ccccccceEeccCccc
Q 040699          454 -GDLTRLQYIIMPNNHLEGPIPV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI-GNLTRIQTLNLSHNDL  528 (689)
Q Consensus       454 -~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l  528 (689)
                       .++++|++|++++|.+++.... ....+++|++|++++|+++.           .....+ ..+++|+...+..+.-
T Consensus       477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF-----------GACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH-----------HHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH-----------HHHHHHHHhCCCCEEEEecCCCc
Confidence             5577788888888877543322 23456788888888887642           111122 4456666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.2e-25  Score=218.75  Aligned_cols=228  Identities=21%  Similarity=0.239  Sum_probs=199.4

Q ss_pred             EEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC
Q 040699          364 ILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN  443 (689)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n  443 (689)
                      .++..+..+. .+|..+.   ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            4555566665 6776543   57999999999999988889999999999999999999888889999999999999999


Q ss_pred             CCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEec
Q 040699          444 NLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNL  523 (689)
Q Consensus       444 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L  523 (689)
                      .+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.++.          ..+|..+..+++|++|++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----------CCCCGGGGGCTTCCEEEC
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----------ecCchhhccCCCCCEEEC
Confidence            9998888899999999999999999998888789999999999999998862          135889999999999999


Q ss_pred             cCcccccCCcccccCCCCCC----EEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCc
Q 040699          524 SHNDLTGSIPSTFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNT  599 (689)
Q Consensus       524 ~~n~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~  599 (689)
                      ++|++++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++|.+++..+..+..+..++.+++.+||
T Consensus       157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            99999988888887777777    999999999976665554 4589999999999997777777788999999999999


Q ss_pred             CCCCCCC
Q 040699          600 FLCGLPL  606 (689)
Q Consensus       600 ~~c~~~~  606 (689)
                      +.|+|+.
T Consensus       236 ~~c~c~~  242 (276)
T 2z62_A          236 WDCSCPR  242 (276)
T ss_dssp             BCCCTTT
T ss_pred             ccccCCc
Confidence            9999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.3e-26  Score=233.69  Aligned_cols=249  Identities=21%  Similarity=0.217  Sum_probs=199.4

Q ss_pred             hcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCc-ccCChhhh------hcCCCceEEEccCCcCCccccccc
Q 040699          284 ENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFR-GHIPLEIG------DILPSLHVFNISMNALDGSIPSSF  356 (689)
Q Consensus       284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~~  356 (689)
                      ...++|+++++++|.+  ..|..+..  .|+.|++++|.+. ..+|....      ..+++|++|++++|.+++..|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            4456777777888777  33433332  2788888888884 34555443      137899999999999998888876


Q ss_pred             --cCCCCCcEEeccCCcccccchhhhhcCC-----CCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc--ccc
Q 040699          357 --GNMNFLRILDLSNNQLTGEIPEHLAVGC-----VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE--ISQ  427 (689)
Q Consensus       357 --~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~  427 (689)
                        ..+++|++|++++|++++. |..+. .+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .+.
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence              8999999999999999844 54333 34     8999999999999999889999999999999999997654  233


Q ss_pred             cc--cCCCCCCEEECCCCCCCCc---CChhhcCCCCCcEEEcCCCccccCCc-ccccCCCCCcEEeccccccccccccCC
Q 040699          428 SL--SKCSSLEGLFLNNNNLSGK---IPRWLGDLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLDLSC  501 (689)
Q Consensus       428 ~~--~~l~~L~~L~L~~n~i~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~l~ls~  501 (689)
                      .+  ..+++|++|++++|.+.+.   ....+..+++|++|++++|++++..| ..+..+++|++|++++|.++       
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-------  266 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-------  266 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-------
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-------
Confidence            33  8899999999999999832   22445678999999999999998765 45677899999999999987       


Q ss_pred             CcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                           .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       267 -----~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 -----QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -----SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -----hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence                 5676665  8999999999999976 55 8999999999999999985

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.7e-24  Score=211.93  Aligned_cols=207  Identities=22%  Similarity=0.265  Sum_probs=176.7

Q ss_pred             CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699          361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL  440 (689)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  440 (689)
                      ..+.++++++.++ .+|..+.   +++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4667788887777 6665543   47888888888888877778888888999999888888777777888999999999


Q ss_pred             CCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccce
Q 040699          441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT  520 (689)
Q Consensus       441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~  520 (689)
                      ++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++.           ..+..+..+++|++
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-----------LPKGVFDKLTSLKE  161 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCE
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-----------cCHhHccCCcccce
Confidence            9999987777788889999999999999998888888999999999999998762           34455888999999


Q ss_pred             EeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          521 LNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       521 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      |++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus       162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            99999999988888899999999999999999988777888999999999999999998864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=4.7e-24  Score=211.81  Aligned_cols=207  Identities=20%  Similarity=0.203  Sum_probs=174.8

Q ss_pred             ccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCC
Q 040699          356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL  435 (689)
Q Consensus       356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  435 (689)
                      +.+++++++++++++.++ .+|..+.   ++++.|++++|.+.+..+..+..+++|+.|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            566777888888888887 7776553   5788888888888887777888888888888888888765433  678899


Q ss_pred             CEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccc
Q 040699          436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNL  515 (689)
Q Consensus       436 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l  515 (689)
                      ++|++++|.+. .+|..+.++++|++|++++|++++..+..|..+++|++|++++|.++.           ..+..|..+
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l  147 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----------LPPGLLTPT  147 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----------CCTTTTTTC
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-----------cChhhcccc
Confidence            99999999988 677788889999999999999998888889999999999999998763           455668889


Q ss_pred             cccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       516 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      ++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|..+....+|+.+++++|++.|.+.
T Consensus       148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            99999999999999877778899999999999999999 667777888899999999999998764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.2e-25  Score=240.33  Aligned_cols=246  Identities=20%  Similarity=0.212  Sum_probs=189.8

Q ss_pred             CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699          310 HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES  389 (689)
Q Consensus       310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  389 (689)
                      +++|++|++++|.+++ +++..+..+++|+.|++++|.+++..|  |..+++|++|++++|.++ .++.     .++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCE
T ss_pred             CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCE
Confidence            3466667777776663 333334446677777777777765444  777788888888888776 4442     368888


Q ss_pred             EEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhc-CCCCCcEEEcCCCc
Q 040699          390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLG-DLTRLQYIIMPNNH  468 (689)
Q Consensus       390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n~  468 (689)
                      |++++|.+.+..+.   .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            88888888776554   357888889998888888788888889999999999998877777775 68899999999999


Q ss_pred             cccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCc
Q 040699          469 LEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS  548 (689)
Q Consensus       469 l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  548 (689)
                      +++..+  ...+++|++|++++|.++            .+|+.+..+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus       181 l~~~~~--~~~l~~L~~L~Ls~N~l~------------~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          181 IYDVKG--QVVFAKLKTLDLSSNKLA------------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             CCEEEC--CCCCTTCCEEECCSSCCC------------EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred             cccccc--cccCCCCCEEECCCCCCC------------CCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence            886633  335889999999999887            355568889999999999999995 67778899999999999


Q ss_pred             CCcCC-CCCchhccCCCCCCEEecc-------CCcCcCCCCC
Q 040699          549 NNKLN-GKIPHQLVELKTLEVFSVA-------YNNLSGEIPE  582 (689)
Q Consensus       549 ~N~l~-~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~~  582 (689)
                      +|++. +.+|..+..++.|+.+++.       .++..|.++.
T Consensus       246 ~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             TCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             CCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            99998 6677888888888888886       6777666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.6e-27  Score=264.08  Aligned_cols=431  Identities=16%  Similarity=0.120  Sum_probs=290.3

Q ss_pred             CCCCCCCEEeCCCCCC-CCccc------------cchhhcCCCCCCEEECCCCCCCCcchhHHhhcCCCCcEEECCCC-c
Q 040699            2 GSFPSLNTLYLLFNNF-TDIAT------------TAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGC-E   67 (689)
Q Consensus         2 ~~l~~L~~L~Ls~n~i-~~~~~------------~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~L~~L~Ls~n-~   67 (689)
                      .++++|++|+++++.. .++..            +......+++|++|+|++|.+++.....+...+++|++|++++| .
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            3589999999999863 22111            12234578999999999999888766677645999999999999 4


Q ss_pred             CCcccCCCCCCCCCCCCeeeCCCCccccCCccch---hhhhcCCCccEEECCCCCCCCCCCccCccccCCCCCCCEEeCC
Q 040699           68 VNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQ---IIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMA  144 (689)
Q Consensus        68 l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~L~  144 (689)
                      +++........++++|++|++++|.++  +....   .+...+++|+.|++++|........+. ..+.++++|++|+++
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESDVD--DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE-RLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCEEE--CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH-HHHHHCTTCCEEECC
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCccC--CcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH-HHHHhCCCCcEEecC
Confidence            443211113347899999999999873  33322   233347899999999875111001111 123567999999999


Q ss_pred             CC-cCccCCCccccCCCCCcEEEccce-------eeeeecCcccccCCCCCCEE-eccCCcceeecCcccccCCCCccee
Q 040699          145 DN-DLRGSLPWCLANMTSLRILYVSYN-------QLTGSISSSPLVHLTSIEKL-YLSNNHFRIPISLEPLFNHSRLKIF  215 (689)
Q Consensus       145 ~n-~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L  215 (689)
                      +| .+. .++..+..+++|++|+++.+       .+. .++. .+.++++|+.+ .+.+.... .. ......+++|+.|
T Consensus       220 ~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~~-~l-~~~~~~~~~L~~L  294 (594)
T 2p1m_B          220 RAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVPA-YL-PAVYSVCSRLTTL  294 (594)
T ss_dssp             TTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCGG-GG-GGGHHHHTTCCEE
T ss_pred             CCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccchh-hH-HHHHHhhCCCCEE
Confidence            98 344 36777889999999996544       343 3343 57889999998 44432211 11 1122357899999


Q ss_pred             eccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEee
Q 040699          216 YADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLV  295 (689)
Q Consensus       216 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~  295 (689)
                      ++++|.+.+..                           +...+..+++|+.|++++| +.+.....+...+++|++|++.
T Consensus       295 ~L~~~~l~~~~---------------------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          295 NLSYATVQSYD---------------------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             ECTTCCCCHHH---------------------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EccCCCCCHHH---------------------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence            99988754321                           1122446678888888877 4433333444568899999885


Q ss_pred             CC---------CCCCCCCCCC-CCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEcc--C----CcCCcc-----ccc
Q 040699          296 ND---------SLAGPFRLPI-HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNIS--M----NALDGS-----IPS  354 (689)
Q Consensus       296 ~~---------~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~~-----~~~  354 (689)
                      ++         .+++.....+ .++++|++|.+..+.+++.....+...+++|+.|+++  +    +.+++.     ++.
T Consensus       347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~  426 (594)
T 2p1m_B          347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA  426 (594)
T ss_dssp             CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred             cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence            42         2322111111 2478899998888888765555555568899999998  3    445421     222


Q ss_pred             cccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccc-cCCCCccEEeccCCcccccccc-cccCC
Q 040699          355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRN-FNLANLMSLQLEGNHFIGEISQ-SLSKC  432 (689)
Q Consensus       355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~-~~~~l  432 (689)
                      .+..+++|+.|++++ .+++.....+...+++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+
T Consensus       427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l  505 (594)
T 2p1m_B          427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL  505 (594)
T ss_dssp             HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred             HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence            367789999999987 67656666666568899999999999876555554 5689999999999998554333 44568


Q ss_pred             CCCCEEECCCCCCCCcCChhh-cCCCCCcEEEcCCCcc
Q 040699          433 SSLEGLFLNNNNLSGKIPRWL-GDLTRLQYIIMPNNHL  469 (689)
Q Consensus       433 ~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~l~~n~l  469 (689)
                      ++|++|++++|+++......+ ..+++|+...+..+.-
T Consensus       506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            999999999998864333344 4577887777766543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=7.1e-24  Score=208.90  Aligned_cols=207  Identities=22%  Similarity=0.235  Sum_probs=186.0

Q ss_pred             CCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEc
Q 040699          385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM  464 (689)
Q Consensus       385 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  464 (689)
                      .+.+.++++++.++.++.. +  .++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            3678999999999875432 2  368999999999999888889999999999999999999777777899999999999


Q ss_pred             CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699          465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES  544 (689)
Q Consensus       465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  544 (689)
                      ++|++++..+..|..+++|++|++++|.++.           ..+..|..+++|++|++++|.+++..+..|..+++|++
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKS-----------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCe-----------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence            9999998888889999999999999998873           55667899999999999999999888788999999999


Q ss_pred             EeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699          545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       545 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      |++++|++++..+..|..+++|+.|++++|+++...+..+..+..++.+++.+||+.|+|+
T Consensus       162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            9999999998888889999999999999999997777777788899999999999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=7.2e-24  Score=210.46  Aligned_cols=208  Identities=22%  Similarity=0.220  Sum_probs=183.4

Q ss_pred             hcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCc
Q 040699          381 AVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQ  460 (689)
Q Consensus       381 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  460 (689)
                      +..++++++++++++.++.+....   .++++.|++++|.+.+..+..|..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            445889999999999998765433   37899999999999988889999999999999999999854332  7899999


Q ss_pred             EEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC
Q 040699          461 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK  540 (689)
Q Consensus       461 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  540 (689)
                      +|++++|+++ .+|..+..+++|++|++++|+++.           ..+..|.++++|++|++++|++++..+..|..++
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-----------l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-----------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP  148 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-----------CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcc-----------cCHHHHcCCCCCCEEECCCCCCCccChhhccccc
Confidence            9999999998 667788999999999999998873           4557799999999999999999988888899999


Q ss_pred             CCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCC
Q 040699          541 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPL  606 (689)
Q Consensus       541 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  606 (689)
                      +|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+.....++.+++.+|||.|+|..
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            9999999999999877778888999999999999998 6676666777899999999999999853

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=1.4e-22  Score=220.66  Aligned_cols=259  Identities=24%  Similarity=0.267  Sum_probs=215.7

Q ss_pred             CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699          287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD  366 (689)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  366 (689)
                      .+++.|+++++.++.+ |..+.  ++|++|++++|.++ .+|.    .+++|+.|++++|.+++ +|.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence            4699999999999854 43333  79999999999998 6776    36899999999999985 454   679999999


Q ss_pred             ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699          367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  446 (689)
                      +++|.++ .+|.    .+++|+.|++++|.++.+..    .+++|++|++++|.+.+. |.   .+++|+.|++++|.++
T Consensus       108 Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~  174 (622)
T 3g06_A          108 IFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT  174 (622)
T ss_dssp             ECSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             CcCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence            9999998 6766    37899999999999987554    358999999999998754 33   4578999999999998


Q ss_pred             CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc
Q 040699          447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN  526 (689)
Q Consensus       447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  526 (689)
                      + +|   ..+++|+.|++++|.+++. |.   .+++|+.|++++|.++            .+|.   .+++|+.|++++|
T Consensus       175 ~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~------------~l~~---~~~~L~~L~Ls~N  231 (622)
T 3g06_A          175 S-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT------------SLPA---LPSGLKELIVSGN  231 (622)
T ss_dssp             C-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS------------SCCC---CCTTCCEEECCSS
T ss_pred             C-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc------------ccCC---CCCCCCEEEccCC
Confidence            5 55   4578999999999999853 33   3578999999999887            3443   2478999999999


Q ss_pred             ccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCC
Q 040699          527 DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLC  602 (689)
Q Consensus       527 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c  602 (689)
                      ++++ +|   ..+++|++|++++|+++. +|.   .+++|+.|++++|.++ .+|..+..++.+..+++.+|++..
T Consensus       232 ~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          232 RLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             ccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            9996 44   466899999999999995 554   5689999999999999 778888889999999999999764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.2e-23  Score=205.58  Aligned_cols=226  Identities=22%  Similarity=0.236  Sum_probs=164.2

Q ss_pred             CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699          337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL  416 (689)
Q Consensus       337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  416 (689)
                      ++..+++..+.+.+.  .....+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence            344555555555433  23455667777777777765 4443  23377777777777777653  35667778888888


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699          417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  496 (689)
Q Consensus       417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  496 (689)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++ 
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  171 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-  171 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-
Confidence            8888777766777788888888888888886666777788888888888888887777777788888888888887662 


Q ss_pred             cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcC
Q 040699          497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  576 (689)
Q Consensus       497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  576 (689)
                                ..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.       +++|+.++++.|.+
T Consensus       172 ----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          172 ----------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH  234 (272)
T ss_dssp             ----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred             ----------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence                      4455577788888888888888877777788888888888888887643       45677788888888


Q ss_pred             cCCCCCccccc
Q 040699          577 SGEIPEWEAQF  587 (689)
Q Consensus       577 ~~~~~~~~~~~  587 (689)
                      +|.+|.+++.+
T Consensus       235 ~g~ip~~~~~~  245 (272)
T 3rfs_A          235 SGVVRNSAGSV  245 (272)
T ss_dssp             GGGBBCTTSCB
T ss_pred             CCcccCccccc
Confidence            88888765443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.9e-22  Score=196.34  Aligned_cols=182  Identities=21%  Similarity=0.203  Sum_probs=143.3

Q ss_pred             CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699          386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP  465 (689)
Q Consensus       386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  465 (689)
                      +.++++++++.+..++.. +  .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            455666666666554332 2  2467777777777777767777778888888888888877777777888888888888


Q ss_pred             CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEE
Q 040699          466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL  545 (689)
Q Consensus       466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  545 (689)
                      +|++++..+..|..+++|++|++++|.+++           ..+..|..+++|++|++++|++++..+..|+.+++|++|
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCC-----------cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            888887777778888888888888887762           444557888899999999999987777788999999999


Q ss_pred             eCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          546 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       546 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      +|++|++++..+..+..+++|+.|++++|++.|...
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            999999998888888889999999999999998744

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.3e-22  Score=198.22  Aligned_cols=205  Identities=21%  Similarity=0.182  Sum_probs=110.6

Q ss_pred             CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699          336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ  415 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (689)
                      ++|+.|++++|.+...  ..+..+++|++|++++|.+. .++  .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            3444444444444321  12444555555555555544 222  222355555555555555555444455555555555


Q ss_pred             ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699          416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  495 (689)
Q Consensus       416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  495 (689)
                      +++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            55555555555555555666666666666555444555556666666666666665555555566666666666655542


Q ss_pred             ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699          496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  563 (689)
Q Consensus       496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  563 (689)
                                 ..+..+..+++|+.|++++|.+.+       .++.|+.|+++.|.+++.+|..++.+
T Consensus       196 -----------~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          196 -----------VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             -----------CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             -----------cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence                       334445566666666666665542       23456666666666666666655543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3e-22  Score=193.48  Aligned_cols=195  Identities=17%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCc-CCccCcccccCCCCccEEeccC-CcccccccccccCCCCCCEE
Q 040699          361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS-LKGHMFSRNFNLANLMSLQLEG-NHFIGEISQSLSKCSSLEGL  438 (689)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L  438 (689)
                      ++++|++++|+++ .++...+.++++|++|++++|. ++.+.+..|.++++|++|++++ |.+.+..+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            3444444444443 3333333334444444444443 4444444444455555555554 45544444455555555555


Q ss_pred             ECCCCCCCCcCChhhcCCCCCc---EEEcCCC-ccccCCcccccCCCCCc-EEeccccccccccccCCCcccCCCch-hh
Q 040699          439 FLNNNNLSGKIPRWLGDLTRLQ---YIIMPNN-HLEGPIPVEFCQLDLLQ-ILDISDNNISGRLDLSCNKLIGPIPP-KI  512 (689)
Q Consensus       439 ~L~~n~i~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~l~ls~n~l~~~~~~-~~  512 (689)
                      ++++|.+.+ +|. |..+++|+   +|++++| .+++..+..|..+++|+ +|++++|.++            .+|. .+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~------------~i~~~~~  176 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT------------SVQGYAF  176 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC------------EECTTTT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc------------ccCHhhc
Confidence            555555553 333 55555555   6666666 66655555566666666 6666666654            2232 23


Q ss_pred             ccccccceEeccCcc-cccCCcccccCC-CCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699          513 GNLTRIQTLNLSHND-LTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  574 (689)
Q Consensus       513 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  574 (689)
                      .. ++|++|++++|+ +++..+..|.++ ++|++|++++|++++..+.   .+++|+.|+++++
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            33 567777777773 665556667777 7777777777777644333   4566677776665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.7e-23  Score=214.06  Aligned_cols=235  Identities=20%  Similarity=0.218  Sum_probs=106.3

Q ss_pred             ceEEEccCCcCCcccc----ccccCCC-CCcEEeccCCcccccchhhhhcC----CCCCCEEEccCCcCCccCcccc---
Q 040699          338 LHVFNISMNALDGSIP----SSFGNMN-FLRILDLSNNQLTGEIPEHLAVG----CVNLESLVLSNNSLKGHMFSRN---  405 (689)
Q Consensus       338 L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~---  405 (689)
                      |+.|++++|.+++..+    ..|..++ +|++|++++|.+.+..+..+...    .++|++|++++|.+.+..+..+   
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            4444444444443333    3444444 45555555555443222222210    1445555555555444333322   


Q ss_pred             -cCC-CCccEEeccCCcccccccccc----cC-CCCCCEEECCCCCCCCcCC----hhhcCCC-CCcEEEcCCCccccCC
Q 040699          406 -FNL-ANLMSLQLEGNHFIGEISQSL----SK-CSSLEGLFLNNNNLSGKIP----RWLGDLT-RLQYIIMPNNHLEGPI  473 (689)
Q Consensus       406 -~~l-~~L~~L~L~~n~~~~~~~~~~----~~-l~~L~~L~L~~n~i~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~  473 (689)
                       ..+ ++|++|++++|.+.+..+..+    .. .++|++|++++|.+++..+    ..+..++ +|++|++++|++++..
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence             122 455555555555544333222    22 2355555555555553222    2233333 5555555555555444


Q ss_pred             cccc----cCC-CCCcEEeccccccccccccCCCcccCCCchhhcc-ccccceEeccCcccccCCc----ccccCCCCCC
Q 040699          474 PVEF----CQL-DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN-LTRIQTLNLSHNDLTGSIP----STFSNLKHVE  543 (689)
Q Consensus       474 ~~~~----~~l-~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~  543 (689)
                      +..+    ..+ ++|++|++++|.++..       -...++..+.. .++|++|+|++|.+++..+    ..+..+++|+
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~  256 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLK-------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ  256 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChh-------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence            4322    223 3556666555555410       00012333333 2356666666666554333    2234455666


Q ss_pred             EEeCcCCcCCCCCc-------hhccCCCCCCEEeccCCcCcCC
Q 040699          544 SLDLSNNKLNGKIP-------HQLVELKTLEVFSVAYNNLSGE  579 (689)
Q Consensus       544 ~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~  579 (689)
                      +|++++|.+....+       ..+..+++|+.||+++|++...
T Consensus       257 ~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            66666665443322       2344455566666666665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.3e-21  Score=190.41  Aligned_cols=180  Identities=23%  Similarity=0.256  Sum_probs=153.3

Q ss_pred             CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699          361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL  440 (689)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  440 (689)
                      ..+.++++++.++ .+|..+.   ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4567777777776 6776543   47888888888888887778888888999999998888888888888999999999


Q ss_pred             CCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccce
Q 040699          441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT  520 (689)
Q Consensus       441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~  520 (689)
                      ++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++           ..+..+..+++|++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~  159 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-----------IPAGAFDKLTNLQT  159 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCE
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-----------cCHHHcCcCcCCCE
Confidence            9999987777888899999999999999998777788899999999999998762           44557889999999


Q ss_pred             EeccCcccccCCcccccCCCCCCEEeCcCCcCCCC
Q 040699          521 LNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGK  555 (689)
Q Consensus       521 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  555 (689)
                      |++++|++++..+..|..+++|++|++++|++...
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999988888899999999999999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3.7e-22  Score=192.82  Aligned_cols=198  Identities=16%  Similarity=0.136  Sum_probs=149.1

Q ss_pred             CCceEEEccCCcCCccccccccCCCCCcEEeccCCc-ccccchhhhhcCCCCCCEEEccC-CcCCccCcccccCCCCccE
Q 040699          336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ-LTGEIPEHLAVGCVNLESLVLSN-NSLKGHMFSRNFNLANLMS  413 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~  413 (689)
                      ++++.|++++|.+++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |.+.++.+..|.++++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            467777777777776666677777888888888876 65 67766667778888888887 7777777777777888888


Q ss_pred             EeccCCcccccccccccCCCCCC---EEECCCC-CCCCcCChhhcCCCCCc-EEEcCCCccccCCcccccCCCCCcEEec
Q 040699          414 LQLEGNHFIGEISQSLSKCSSLE---GLFLNNN-NLSGKIPRWLGDLTRLQ-YIIMPNNHLEGPIPVEFCQLDLLQILDI  488 (689)
Q Consensus       414 L~L~~n~~~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l  488 (689)
                      |++++|.+.+ +|. +..+++|+   +|++++| .+.+..+.+|.++++|+ +|++++|+++...+..|.. ++|++|++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            8888887765 444 77777777   8888888 78766666788888888 8888888888555555655 78888888


Q ss_pred             cccc-cccccccCCCcccCCCchhhccc-cccceEeccCcccccCCcccccCCCCCCEEeCcCCc
Q 040699          489 SDNN-ISGRLDLSCNKLIGPIPPKIGNL-TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       489 ~~n~-~~~~l~ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  551 (689)
                      ++|+ ++.           ..+..|.++ ++|+.|++++|++++..+.   .+++|+.|+++++.
T Consensus       187 ~~n~~l~~-----------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          187 NKNKYLTV-----------IDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCTTCCE-----------ECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCCccc-----------CCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            8884 652           445667888 8899999999888854443   56788888888763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=2.2e-23  Score=217.08  Aligned_cols=240  Identities=19%  Similarity=0.245  Sum_probs=169.1

Q ss_pred             CCCceEEEccCCcCCcccc----ccccCCCCCcEEeccCC---cccccchhhh------hcCCCCCCEEEccCCcCCcc-
Q 040699          335 LPSLHVFNISMNALDGSIP----SSFGNMNFLRILDLSNN---QLTGEIPEHL------AVGCVNLESLVLSNNSLKGH-  400 (689)
Q Consensus       335 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n---~l~~~~~~~~------~~~l~~L~~L~l~~n~l~~~-  400 (689)
                      +++|+.|++++|.+....+    ..+..+++|++|++++|   ++.+.+|..+      +..+++|++|++++|.+.+. 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            5667777777777665433    33567777777777775   3334445444      24577888888888887763 


Q ss_pred             ---CcccccCCCCccEEeccCCccccccccc----ccCC---------CCCCEEECCCCCCC-CcCC---hhhcCCCCCc
Q 040699          401 ---MFSRNFNLANLMSLQLEGNHFIGEISQS----LSKC---------SSLEGLFLNNNNLS-GKIP---RWLGDLTRLQ  460 (689)
Q Consensus       401 ---~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~l---------~~L~~L~L~~n~i~-~~~~---~~l~~l~~L~  460 (689)
                         .+..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.+. +..+   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               3445567788888888888875443333    3333         78888888888887 3344   4566788888


Q ss_pred             EEEcCCCcccc-----CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccC----
Q 040699          461 YIIMPNNHLEG-----PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS----  531 (689)
Q Consensus       461 ~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----  531 (689)
                      +|++++|+++.     ..+..+..+++|++|++++|.++..       -.+.+|..+..+++|++|+|++|.+++.    
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------HHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            89998888862     2344677888899999888887410       0014567788888999999999988765    


Q ss_pred             Cccccc--CCCCCCEEeCcCCcCCC----CCchhc-cCCCCCCEEeccCCcCcCCCC
Q 040699          532 IPSTFS--NLKHVESLDLSNNKLNG----KIPHQL-VELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       532 ~~~~~~--~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      ++..+.  .+++|++|+|++|.++.    .+|..+ ..+++|+.|++++|++++..+
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            455663  38899999999999987    367766 557899999999999987664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=195.88  Aligned_cols=183  Identities=15%  Similarity=0.126  Sum_probs=103.8

Q ss_pred             CCcCEEEccCCcCcccCChhh--hhcCCCceEEEccCCcCCccccccc--cCCCCCcEEeccCCcccccch---hhhhcC
Q 040699          311 KRLGMLDISNNNFRGHIPLEI--GDILPSLHVFNISMNALDGSIPSSF--GNMNFLRILDLSNNQLTGEIP---EHLAVG  383 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~---~~~~~~  383 (689)
                      ..++.+.+.++.+.+..-..+  ...+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+   ...+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            346777777776642111111  1123568888888888877777776  778888888888888775333   122224


Q ss_pred             CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCccccc--c--cccccCCCCCCEEECCCCCCCCcCCh----hhcC
Q 040699          384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE--I--SQSLSKCSSLEGLFLNNNNLSGKIPR----WLGD  455 (689)
Q Consensus       384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~L~~n~i~~~~~~----~l~~  455 (689)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|.++. .+.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            66777777777777666666666666666666666665431  1  1223455566666666665541 121    2344


Q ss_pred             CCCCcEEEcCCCccccCCcccccCC---CCCcEEeccccccc
Q 040699          456 LTRLQYIIMPNNHLEGPIPVEFCQL---DLLQILDISDNNIS  494 (689)
Q Consensus       456 l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~~  494 (689)
                      +++|++|++++|++++..|..+..+   ++|++|++++|.++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            5555555555555554444444333   34444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.6e-21  Score=194.12  Aligned_cols=193  Identities=22%  Similarity=0.347  Sum_probs=99.5

Q ss_pred             CCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCE
Q 040699          358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEG  437 (689)
Q Consensus       358 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  437 (689)
                      .+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            3444444444444444 3331  2224445555555554444333  44455555555555554432  23455555555


Q ss_pred             EECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccc
Q 040699          438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTR  517 (689)
Q Consensus       438 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~  517 (689)
                      |++++|.+.+. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.++            .++. +..+++
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~------------~~~~-l~~l~~  174 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS------------DLTP-LANLSK  174 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------CCGG-GTTCTT
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC------------CChh-hcCCCC
Confidence            55555555532 2 25555555566665555554322  555566666666655554            2222 555566


Q ss_pred             cceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699          518 IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       518 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  578 (689)
                      |+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++
T Consensus       175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            6666666666654332  5556666666666666654432  5556666666666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.8e-22  Score=207.91  Aligned_cols=240  Identities=21%  Similarity=0.226  Sum_probs=130.9

Q ss_pred             CCcCEEEccCCcCcccCCh----hhhhcCC-CceEEEccCCcCCccccccccCC-----CCCcEEeccCCcccccchhhh
Q 040699          311 KRLGMLDISNNNFRGHIPL----EIGDILP-SLHVFNISMNALDGSIPSSFGNM-----NFLRILDLSNNQLTGEIPEHL  380 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~  380 (689)
                      ++|++|++++|.++ ..+.    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+
T Consensus        22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            33555555555554 2222    2222344 55555555555554444444432     556666666666553333322


Q ss_pred             hc---CC-CCCCEEEccCCcCCccCccccc----C-CCCccEEeccCCcccccc----cccccCCC-CCCEEECCCCCCC
Q 040699          381 AV---GC-VNLESLVLSNNSLKGHMFSRNF----N-LANLMSLQLEGNHFIGEI----SQSLSKCS-SLEGLFLNNNNLS  446 (689)
Q Consensus       381 ~~---~l-~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~~~~~~----~~~~~~l~-~L~~L~L~~n~i~  446 (689)
                      ..   .+ ++|++|++++|.+.+.....+.    . .++|++|++++|.+....    +..+..++ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence            21   12 5666666666666554443322    2 246666666666665322    23334444 7777777777776


Q ss_pred             CcCCh----hhcCC-CCCcEEEcCCCccccC----CcccccC-CCCCcEEeccccccccccccCCCcccCCCchhhcccc
Q 040699          447 GKIPR----WLGDL-TRLQYIIMPNNHLEGP----IPVEFCQ-LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLT  516 (689)
Q Consensus       447 ~~~~~----~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~  516 (689)
                      +..+.    .+..+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++.      . ...+...+..++
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~-~~~l~~~~~~l~  253 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP------S-LENLKLLKDSLK  253 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC------C-HHHHHHTTTTTT
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH------H-HHHHHHHHhcCC
Confidence            54443    23334 4777777777777653    2334444 34777777777776520      0 001113345667


Q ss_pred             ccceEeccCcccccCC-------cccccCCCCCCEEeCcCCcCCCCCch
Q 040699          517 RIQTLNLSHNDLTGSI-------PSTFSNLKHVESLDLSNNKLNGKIPH  558 (689)
Q Consensus       517 ~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~  558 (689)
                      +|++|++++|.+.+..       +..+..+++|+.|++++|++....+.
T Consensus       254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            7888888888754332       23566778888888888888755433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.9e-22  Score=204.67  Aligned_cols=253  Identities=17%  Similarity=0.218  Sum_probs=187.1

Q ss_pred             CcCEEEccCCcCcccCChhhhhcC--CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDIL--PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES  389 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  389 (689)
                      .++.++++++.+.+    .....+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+......+..+++|++
T Consensus        48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            36778888877652    222223  6889999999988876655 5578999999999998875423344556899999


Q ss_pred             EEccCCcCCccCcccccCCCCccEEeccCC-cccc-cccccccCCCCCCEEECCCC-CCCCc-CChhhcCCC-CCcEEEc
Q 040699          390 LVLSNNSLKGHMFSRNFNLANLMSLQLEGN-HFIG-EISQSLSKCSSLEGLFLNNN-NLSGK-IPRWLGDLT-RLQYIIM  464 (689)
Q Consensus       390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~-~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~l~~l~-~L~~L~l  464 (689)
                      |++++|.+.+..+..+..+++|++|++++| .+++ ..+..+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999888777777888999999999998 5654 25666788999999999999 88753 566778888 9999999


Q ss_pred             CCCc--cc-cCCcccccCCCCCcEEeccccc-cccccccCCCcccCCCchhhccccccceEeccCcc-cccCCcccccCC
Q 040699          465 PNNH--LE-GPIPVEFCQLDLLQILDISDNN-ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHND-LTGSIPSTFSNL  539 (689)
Q Consensus       465 ~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l  539 (689)
                      ++|.  ++ +..+..+..+++|++|++++|. +++           ..+..+..+++|++|++++|. +.......++.+
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-----------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            9984  44 3456667788999999999887 442           455677888999999999985 322222257788


Q ss_pred             CCCCEEeCcCCcCCCCCchhccCC-CCCCEEeccCCcCcCCCCCcc
Q 040699          540 KHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPEWE  584 (689)
Q Consensus       540 ~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~  584 (689)
                      ++|++|++++| +...   .+..+ ..+..|++++|.+++..|.+.
T Consensus       272 ~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          272 PTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             TTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             CCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence            99999999988 4432   23322 336666789999988877654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=9.4e-22  Score=200.88  Aligned_cols=223  Identities=17%  Similarity=0.171  Sum_probs=133.8

Q ss_pred             CCCEEEccCCcCcCCCChHHHhcC--CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCccc-CChhhhhcCCCce
Q 040699          263 DLEYADLSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGH-IPLEIGDILPSLH  339 (689)
Q Consensus       263 ~L~~L~l~~~~l~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~  339 (689)
                      .++.++++++.+.   + ..+..+  ++++.+++.++.+.+..+. +..+++|++|++++|.+++. ++. .+..+++|+
T Consensus        48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCS
T ss_pred             hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCC
Confidence            4677888877665   2 223455  7888888888887776554 44677888888888877643 333 334467788


Q ss_pred             EEEccCCcCCccccccccCCCCCcEEeccCC-cccccchhhhhcCCCCCCEEEccCC-cCCcc-CcccccCCC-CccEEe
Q 040699          340 VFNISMNALDGSIPSSFGNMNFLRILDLSNN-QLTGEIPEHLAVGCVNLESLVLSNN-SLKGH-MFSRNFNLA-NLMSLQ  415 (689)
Q Consensus       340 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~  415 (689)
                      .|++++|.+++..+..+..+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            8888877777666677777777777777777 5654322333444777777777777 66543 233344566 666666


Q ss_pred             ccCCc--cc-ccccccccCCCCCCEEECCCCC-CCCcCChhhcCCCCCcEEEcCCCc-cccCCcccccCCCCCcEEeccc
Q 040699          416 LEGNH--FI-GEISQSLSKCSSLEGLFLNNNN-LSGKIPRWLGDLTRLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISD  490 (689)
Q Consensus       416 L~~n~--~~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  490 (689)
                      +++|.  ++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            66662  32 2334445556666666666665 444444455555666666665553 1111111344455555555555


Q ss_pred             c
Q 040699          491 N  491 (689)
Q Consensus       491 n  491 (689)
                      |
T Consensus       282 ~  282 (336)
T 2ast_B          282 I  282 (336)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.4e-21  Score=195.01  Aligned_cols=226  Identities=21%  Similarity=0.253  Sum_probs=145.6

Q ss_pred             CCceEEEccCCcCCccccc---cccCCCCCcEEeccCCcccccchhhhh-cCCCCCCEEEccCCcCCccCc----ccccC
Q 040699          336 PSLHVFNISMNALDGSIPS---SFGNMNFLRILDLSNNQLTGEIPEHLA-VGCVNLESLVLSNNSLKGHMF----SRNFN  407 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~----~~~~~  407 (689)
                      ..++.+.+.++.+....-.   .+..+++|++|++++|.+.+..|...+ ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3567777777766421110   122345688888888887766666553 557778888888887775333    33346


Q ss_pred             CCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCc--C--ChhhcCCCCCcEEEcCCCccccCCcc---cccCC
Q 040699          408 LANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGK--I--PRWLGDLTRLQYIIMPNNHLEGPIPV---EFCQL  480 (689)
Q Consensus       408 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l  480 (689)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|+++...+.   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            77777777777777777677777777777777777776531  1  22335677777777777777532111   24566


Q ss_pred             CCCcEEeccccccccccccCCCcccCCCchhhccc---cccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCc
Q 040699          481 DLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNL---TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP  557 (689)
Q Consensus       481 ~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  557 (689)
                      ++|++|++++|.+++           ..|+.+..+   ++|++|++++|+++ .+|..+.  ++|++|+|++|++++. |
T Consensus       224 ~~L~~L~Ls~N~l~~-----------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~  288 (310)
T 4glp_A          224 VQPHSLDLSHNSLRA-----------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P  288 (310)
T ss_dssp             CCCSSEECTTSCCCC-----------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred             CCCCEEECCCCCCCc-----------cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence            777777777776652           345555444   57777777777777 4455443  6777777777777753 3


Q ss_pred             hhccCCCCCCEEeccCCcCc
Q 040699          558 HQLVELKTLEVFSVAYNNLS  577 (689)
Q Consensus       558 ~~~~~l~~L~~L~l~~N~l~  577 (689)
                      . +..+++|+.|++++|+++
T Consensus       289 ~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          289 Q-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             C-TTSCCCCSCEECSSTTTS
T ss_pred             h-hhhCCCccEEECcCCCCC
Confidence            2 456677777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.6e-20  Score=188.41  Aligned_cols=191  Identities=26%  Similarity=0.397  Sum_probs=122.8

Q ss_pred             CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699          336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ  415 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (689)
                      ++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            455555555555543 22 3555666666666666665 4443  34466666666666666553  2455666777777


Q ss_pred             ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699          416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  495 (689)
Q Consensus       416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  495 (689)
                      +++|.+.+..  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.++ 
T Consensus       114 l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-  186 (308)
T 1h6u_A          114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-  186 (308)
T ss_dssp             CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             CCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC-
Confidence            7777665432  26677777777777777764333  6667777777777777765433  677777777777777765 


Q ss_pred             ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                                 .++. +..+++|+.|++++|++++..+  +..+++|++|++++|++++
T Consensus       187 -----------~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 -----------DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -----------CCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             -----------cChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence                       2232 6677778888888887775543  6777888888888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=4.3e-21  Score=182.10  Aligned_cols=196  Identities=20%  Similarity=0.275  Sum_probs=160.0

Q ss_pred             cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699          412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  491 (689)
Q Consensus       412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  491 (689)
                      +.++++++.++.. |..+.  +++++|++++|.+.+..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            5788898887754 44443  68999999999999777778999999999999999999888999999999999999999


Q ss_pred             ccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699          492 NISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  571 (689)
Q Consensus       492 ~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  571 (689)
                      .++.           ..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus        91 ~l~~-----------l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           91 KITE-----------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCc-----------cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            8872           34455789999999999999999998999999999999999999999888888999999999999


Q ss_pred             cCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCccc
Q 040699          572 AYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLID  630 (689)
Q Consensus       572 ~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~  630 (689)
                      ++|++.|.++- |+..+       +..++..-  ....|..|...+|..+.+...+++.+
T Consensus       160 ~~N~~~c~c~l~~l~~~-------l~~~~~~~--~~~~C~~P~~l~g~~l~~l~~~~~~c  210 (220)
T 2v9t_B          160 AQNPFICDCHLKWLADY-------LHTNPIET--SGARCTSPRRLANKRIGQIKSKKFRC  210 (220)
T ss_dssp             CSSCEECSGGGHHHHHH-------HHHCCCBC--SCCBEEESGGGTTCBGGGSCGGGCCC
T ss_pred             CCCCcCCCCccHHHHHH-------HHhCCCCc--cCCCcCCchHHcCCchhhCCHHHCcC
Confidence            99999987652 22111       11122111  12368888888888888877776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.9e-20  Score=191.66  Aligned_cols=240  Identities=16%  Similarity=0.130  Sum_probs=159.5

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCE-EEc
Q 040699          314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLES-LVL  392 (689)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l  392 (689)
                      ++++.++++++ .+|..+   .+++++|++++|.++.+.+++|.++++|++|+|++|++.+.++..+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666777776 666654   2467777777777776656677777888888888877765677777777777665 455


Q ss_pred             cCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCC-CCCCCcCChhhcCCC-CCcEEEcCCCccc
Q 040699          393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN-NNLSGKIPRWLGDLT-RLQYIIMPNNHLE  470 (689)
Q Consensus       393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~-~L~~L~l~~n~l~  470 (689)
                      ++|++..+.+..|..+++|++|++++|++....+..+....++..+++.+ +.+....+.+|.++. .++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            56777777777777778888888888777766666666666677777754 456544455566654 5777888888877


Q ss_pred             cCCcccccCCCCCcEEeccc-cccccccccCCCcccCCCc-hhhccccccceEeccCcccccCCcccccCCCCCCEEeCc
Q 040699          471 GPIPVEFCQLDLLQILDISD-NNISGRLDLSCNKLIGPIP-PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS  548 (689)
Q Consensus       471 ~~~~~~~~~l~~L~~L~l~~-n~~~~~l~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  548 (689)
                      .+.+..| ...+|++|++++ |.++            .+| ..|.++++|++|++++|+++.+.+..|   .+|+.|.+.
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~------------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l  231 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLE------------ELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRAR  231 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCC------------CCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECT
T ss_pred             CCChhhc-cccchhHHhhccCCccc------------CCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhc
Confidence            5555444 345677777764 4443            334 457778888888888888875554444   445555554


Q ss_pred             CCcCCCCCchhccCCCCCCEEeccCC
Q 040699          549 NNKLNGKIPHQLVELKTLEVFSVAYN  574 (689)
Q Consensus       549 ~N~l~~~~~~~~~~l~~L~~L~l~~N  574 (689)
                      ++.-...+|. +..+++|+.+++.++
T Consensus       232 ~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          232 STYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             TCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             cCCCcCcCCC-chhCcChhhCcCCCC
Confidence            4433335553 667778888887654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=5.3e-22  Score=206.62  Aligned_cols=246  Identities=18%  Similarity=0.223  Sum_probs=142.9

Q ss_pred             hcCCCCcEEEeeCCCCCCCC----CCCCCCCCCcCEEEccCCcC---cccCChhhh------hcCCCceEEEccCCcCCc
Q 040699          284 ENNTKLRQLSLVNDSLAGPF----RLPIHSHKRLGMLDISNNNF---RGHIPLEIG------DILPSLHVFNISMNALDG  350 (689)
Q Consensus       284 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~------~~~~~L~~L~l~~n~l~~  350 (689)
                      ..+++|+.|++++|.+.+..    +..+..+++|++|++++|.+   .+.+|..+.      ..+++|+.|++++|.+.+
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            44555555555555554431    12344566666666666433   223333321      224455555555555443


Q ss_pred             ----cccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCC---------CCccEEecc
Q 040699          351 ----SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNL---------ANLMSLQLE  417 (689)
Q Consensus       351 ----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~L~L~  417 (689)
                          .++..+..+++|++|++++|.+.+..+..+..                     .+..+         ++|++|+++
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---------------------ALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---------------------HHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH---------------------HHHHHhhhhhcccCCCCcEEECC
Confidence                23334444455555555555443222211111                     01111         566666666


Q ss_pred             CCccc-cccc---ccccCCCCCCEEECCCCCCCC-----cCChhhcCCCCCcEEEcCCCccc----cCCcccccCCCCCc
Q 040699          418 GNHFI-GEIS---QSLSKCSSLEGLFLNNNNLSG-----KIPRWLGDLTRLQYIIMPNNHLE----GPIPVEFCQLDLLQ  484 (689)
Q Consensus       418 ~n~~~-~~~~---~~~~~l~~L~~L~L~~n~i~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~  484 (689)
                      +|++. ...+   ..+..+++|++|++++|.+..     ..+..+..+++|++|++++|.++    ..+|..+..+++|+
T Consensus       168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            66654 2223   355667778888888877762     23336677778888888888775    45566777788888


Q ss_pred             EEeccccccccccccCCCcccCCCchhhc--cccccceEeccCccccc----CCcccc-cCCCCCCEEeCcCCcCCCCCc
Q 040699          485 ILDISDNNISGRLDLSCNKLIGPIPPKIG--NLTRIQTLNLSHNDLTG----SIPSTF-SNLKHVESLDLSNNKLNGKIP  557 (689)
Q Consensus       485 ~L~l~~n~~~~~l~ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~~  557 (689)
                      +|++++|.+++.       -...++..+.  .+++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..+
T Consensus       248 ~L~L~~n~i~~~-------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          248 ELGLNDCLLSAR-------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             EEECTTCCCCHH-------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EEECCCCCCchh-------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            888888877521       0001345553  37889999999998886    366666 668999999999999987664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2e-20  Score=191.51  Aligned_cols=244  Identities=18%  Similarity=0.151  Sum_probs=193.4

Q ss_pred             eEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc-cCcccccCCCCccE-Eec
Q 040699          339 HVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG-HMFSRNFNLANLMS-LQL  416 (689)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~-L~L  416 (689)
                      +.++.+++.++ .+|..+  .+++++|++++|+++ .+|...|.++++|++|+|++|++.+ +....|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56788888888 456555  368999999999998 9999999999999999999999865 55567888988775 566


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCC-CccccCCcccccCCC-CCcEEeccccccc
Q 040699          417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPN-NHLEGPIPVEFCQLD-LLQILDISDNNIS  494 (689)
Q Consensus       417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~~  494 (689)
                      .+|++....++.|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            77899988899999999999999999999977777777788888999865 677777777787774 6889999999887


Q ss_pred             cccccCCCcccCCCchhhccccccceEeccC-cccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccC
Q 040699          495 GRLDLSCNKLIGPIPPKIGNLTRIQTLNLSH-NDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  573 (689)
Q Consensus       495 ~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  573 (689)
                                  .++.......+|++|++++ |.++.+.+++|+++++|++|++++|+|+.+.+..+   .+|+.|.+.+
T Consensus       168 ------------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~  232 (350)
T 4ay9_X          168 ------------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARS  232 (350)
T ss_dssp             ------------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTT
T ss_pred             ------------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhcc
Confidence                        4555555567899999985 67776666789999999999999999996655444   5666777666


Q ss_pred             CcCcCCCCCccccccccCcccccCCcCCCC
Q 040699          574 NNLSGEIPEWEAQFATFNENSYEGNTFLCG  603 (689)
Q Consensus       574 N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~  603 (689)
                      ++-...+|. +..+..++.+.+. +++.|+
T Consensus       233 ~~~l~~lP~-l~~l~~L~~l~l~-~~~~c~  260 (350)
T 4ay9_X          233 TYNLKKLPT-LEKLVALMEASLT-YPSHCC  260 (350)
T ss_dssp             CTTCCCCCC-TTTCCSCCEEECS-CHHHHH
T ss_pred             CCCcCcCCC-chhCcChhhCcCC-CCcccc
Confidence            654446664 4567777777664 566664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2.8e-20  Score=176.53  Aligned_cols=195  Identities=18%  Similarity=0.231  Sum_probs=157.5

Q ss_pred             cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699          412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  490 (689)
Q Consensus       412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  490 (689)
                      +.+++++|.++. +|..+  .+.+++|++++|.+.+..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            589999999875 45444  3467999999999997644 5688999999999999999988888999999999999999


Q ss_pred             cccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 040699          491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  570 (689)
Q Consensus       491 n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  570 (689)
                      |.+++           ..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+
T Consensus        91 N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           91 NRLEN-----------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             SCCCC-----------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CccCc-----------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            98873           5666799999999999999999999899999999999999999999999899999999999999


Q ss_pred             ccCCcCcCCCCC-ccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCcc
Q 040699          571 VAYNNLSGEIPE-WEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLI  629 (689)
Q Consensus       571 l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~  629 (689)
                      +++|++.|.++- |+..+..-.. ...+++        .|..|...++.++.+.....+.
T Consensus       160 L~~N~l~c~c~l~~l~~~~~~~~-~~~~~~--------~C~~P~~l~g~~l~~l~~~~~~  210 (220)
T 2v70_A          160 LLANPFNCNCYLAWLGEWLRKKR-IVTGNP--------RCQKPYFLKEIPIQDVAIQDFT  210 (220)
T ss_dssp             CCSCCEECSGGGHHHHHHHHHSC-CBCCCC--------EEEESGGGTTEEGGGSCGGGCC
T ss_pred             ecCcCCcCCCchHHHHHHHHhcC-ccccCC--------ccCCChHHCCCChhhCCHHHcc
Confidence            999999998773 2222211111 112222        5777777777766665555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1e-19  Score=171.55  Aligned_cols=158  Identities=22%  Similarity=0.262  Sum_probs=83.8

Q ss_pred             CccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecc
Q 040699          410 NLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS  489 (689)
Q Consensus       410 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  489 (689)
                      +|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44444444444444444444455555555555555554444444555555555555555554444445555555555555


Q ss_pred             ccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEE
Q 040699          490 DNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  569 (689)
Q Consensus       490 ~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  569 (689)
                      +|.+++           ..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+       .+++|+.|
T Consensus       109 ~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L  170 (208)
T 2o6s_A          109 TNQLQS-----------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL  170 (208)
T ss_dssp             SSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHH
T ss_pred             CCcCcc-----------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHH
Confidence            555441           233335555666666666666655555555666666666666665543       23455666


Q ss_pred             eccCCcCcCCCCCccc
Q 040699          570 SVAYNNLSGEIPEWEA  585 (689)
Q Consensus       570 ~l~~N~l~~~~~~~~~  585 (689)
                      +++.|.+++.+|++++
T Consensus       171 ~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          171 SEWINKHSGVVRNSAG  186 (208)
T ss_dssp             HHHHHHCTTTBBCTTS
T ss_pred             HHHHHhCCceeeccCc
Confidence            6666666666665443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.4e-19  Score=168.98  Aligned_cols=131  Identities=26%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             CCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEEC
Q 040699          361 FLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFL  440 (689)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  440 (689)
                      +|++|++++|++. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            3344444444443 333333333344444444444443333333333444444444444443333333444444444444


Q ss_pred             CCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699          441 NNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  492 (689)
Q Consensus       441 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  492 (689)
                      ++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            4444443333334444444444444444443333334444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=2e-19  Score=170.60  Aligned_cols=154  Identities=21%  Similarity=0.214  Sum_probs=135.7

Q ss_pred             CEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCC
Q 040699          388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN  467 (689)
Q Consensus       388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  467 (689)
                      +.++++++.++.++.. +  .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            6788898888876543 2  368999999999999888888999999999999999999888899999999999999999


Q ss_pred             ccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeC
Q 040699          468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL  547 (689)
Q Consensus       468 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  547 (689)
                      +++...+..|..+++|++|++++|.+++           ..|..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINC-----------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCE-----------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence            9998777788999999999999998873           56778999999999999999999888888999999999999


Q ss_pred             cCCcCCCC
Q 040699          548 SNNKLNGK  555 (689)
Q Consensus       548 ~~N~l~~~  555 (689)
                      ++|++...
T Consensus       160 ~~N~~~c~  167 (220)
T 2v9t_B          160 AQNPFICD  167 (220)
T ss_dssp             CSSCEECS
T ss_pred             CCCCcCCC
Confidence            99998753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.3e-19  Score=192.81  Aligned_cols=187  Identities=23%  Similarity=0.315  Sum_probs=121.2

Q ss_pred             CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699          337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL  416 (689)
Q Consensus       337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  416 (689)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|    ..+++|++|++++|.++++..  +..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            77888888887775 45444  267888888888877 666    236777778887777776433  433  7777777


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699          417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  496 (689)
Q Consensus       417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  496 (689)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|++++ +|. |.  ++|+.|++++|.++  
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~--  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE--  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS--
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC--
Confidence            7777765 333   56777777777777764 443   45677777777777775 444 44  67777777777665  


Q ss_pred             cccCCCcccCCCchhhcccccc-------ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699          497 LDLSCNKLIGPIPPKIGNLTRI-------QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  563 (689)
Q Consensus       497 l~ls~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  563 (689)
                                .+|. +..  +|       +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus       194 ----------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          194 ----------SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ----------SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             ----------chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence                      3444 332  44       77777777776 345555557777777777777766666665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=2.5e-19  Score=184.10  Aligned_cols=181  Identities=22%  Similarity=0.209  Sum_probs=153.6

Q ss_pred             CCEEEccCCcCCccCcccccCCCCccEEeccCCccccccccccc-CCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699          387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS-KCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP  465 (689)
Q Consensus       387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  465 (689)
                      -+.++++++.+..++.. +  .+.++.|+|++|.+++..+..+. .+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus        20 ~~~l~c~~~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSSCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            36899999988875443 2  34689999999999988888887 89999999999999997777889999999999999


Q ss_pred             CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccc---cCCCCC
Q 040699          466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF---SNLKHV  542 (689)
Q Consensus       466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L  542 (689)
                      +|+++...+..|..+++|++|+|++|.++.           ..|..|.++++|+.|+|++|.+++..+..|   ..+++|
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVV-----------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccE-----------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            999998888889999999999999998763           557789999999999999999997666666   568999


Q ss_pred             CEEeCcCCcCCCCCchhccCCCC--CCEEeccCCcCcCCCC
Q 040699          543 ESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSGEIP  581 (689)
Q Consensus       543 ~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~  581 (689)
                      +.|+|++|+++...+..+..++.  ++.|++++|++.|.+.
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            99999999999877778887776  4889999999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=9.3e-19  Score=165.99  Aligned_cols=157  Identities=21%  Similarity=0.214  Sum_probs=136.4

Q ss_pred             CCEEEccCCcCCccCcccccCCCCccEEeccCCccccccc-ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699          387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEIS-QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP  465 (689)
Q Consensus       387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  465 (689)
                      -+.+++++|.++.++. .+  .+.++.|++++|.+.+..+ ..|..+++|++|++++|.+++..+.+|.++++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3689999999887544 22  3467899999999987754 568899999999999999998777889999999999999


Q ss_pred             CCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEE
Q 040699          466 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESL  545 (689)
Q Consensus       466 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  545 (689)
                      +|.+++..+..|..+++|++|++++|.+++           ..|..|..+++|++|+|++|++++..|..|..+++|++|
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITC-----------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCC-----------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCe-----------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            999998888889999999999999998773           567889999999999999999998889999999999999


Q ss_pred             eCcCCcCCCCCc
Q 040699          546 DLSNNKLNGKIP  557 (689)
Q Consensus       546 ~L~~N~l~~~~~  557 (689)
                      ++++|++....+
T Consensus       159 ~L~~N~l~c~c~  170 (220)
T 2v70_A          159 NLLANPFNCNCY  170 (220)
T ss_dssp             ECCSCCEECSGG
T ss_pred             EecCcCCcCCCc
Confidence            999999986544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.8e-18  Score=165.22  Aligned_cols=156  Identities=19%  Similarity=0.244  Sum_probs=124.8

Q ss_pred             ccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699          411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  490 (689)
Q Consensus       411 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  490 (689)
                      .+.++.+++.+... |..+  .++|++|++++|.+.+..+..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45566666665533 3322  26788888888888877778888888888888888888777667788888888888888


Q ss_pred             cccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEe
Q 040699          491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  570 (689)
Q Consensus       491 n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  570 (689)
                      |.++.           ..+..|..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+
T Consensus        98 N~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           98 NQLTV-----------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             SCCCC-----------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCc-----------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            87762           44556788889999999999988 6677888899999999999999987777888899999999


Q ss_pred             ccCCcCcCCCC
Q 040699          571 VAYNNLSGEIP  581 (689)
Q Consensus       571 l~~N~l~~~~~  581 (689)
                      +++|++.|.++
T Consensus       166 l~~N~~~c~c~  176 (229)
T 3e6j_A          166 LFGNPWDCECR  176 (229)
T ss_dssp             CTTSCBCTTBG
T ss_pred             eeCCCccCCcc
Confidence            99999998876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=5.1e-19  Score=181.76  Aligned_cols=177  Identities=31%  Similarity=0.318  Sum_probs=154.1

Q ss_pred             cEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCccccc-CCCCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699          363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN  441 (689)
Q Consensus       363 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  441 (689)
                      +.++++++.+. .+|..+.   ..++.|++++|.+++.....+. .+++|+.|+|++|++.+..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            68899999998 7887654   4689999999999998888887 89999999999999998888889999999999999


Q ss_pred             CCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh-h---ccccc
Q 040699          442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK-I---GNLTR  517 (689)
Q Consensus       442 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~-~---~~l~~  517 (689)
                      +|.+.+..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++            .+|.. |   ..+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~------------~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS------------RFPVELIKDGNKLPK  164 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------SCCGGGTC----CTT
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC------------eeCHHHhcCcccCCc
Confidence            99999777778999999999999999999888899999999999999999887            34443 4   57899


Q ss_pred             cceEeccCcccccCCcccccCCCC--CCEEeCcCCcCCCC
Q 040699          518 IQTLNLSHNDLTGSIPSTFSNLKH--VESLDLSNNKLNGK  555 (689)
Q Consensus       518 L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~  555 (689)
                      |+.|+|++|+++...+..+..++.  ++.|+|++|++...
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            999999999999777778888877  48999999999753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.7e-18  Score=184.48  Aligned_cols=186  Identities=28%  Similarity=0.366  Sum_probs=94.5

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV  391 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  391 (689)
                      +++.|++++|.++ .+|..+   +++|+.|++++|.++ .+|   ..+++|+.|++++|+++ .+|. +.   .+|++|+
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEE
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEE
Confidence            4555555555555 244433   245555555555555 233   23455555555555555 3444 21   1555555


Q ss_pred             ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699          392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG  471 (689)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  471 (689)
                      +++|.++++..    .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++ +|. |.  ++|+.|++++|+++ 
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            55555555332    35555555555555554 222   34555555555555553 333 33  55555555555555 


Q ss_pred             CCcccccCCCCC-------cEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccC
Q 040699          472 PIPVEFCQLDLL-------QILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN  538 (689)
Q Consensus       472 ~~~~~~~~l~~L-------~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  538 (689)
                      .+|. +..  +|       +.|++++|.++            .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            2333 322  44       55555555554            34555555555555555555555555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=5.1e-18  Score=168.46  Aligned_cols=169  Identities=25%  Similarity=0.409  Sum_probs=96.0

Q ss_pred             CCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEc
Q 040699          385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM  464 (689)
Q Consensus       385 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  464 (689)
                      ++|+.|++++|.+...  ..+..+++|++|++++|++.+..+  +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            3444444444444432  123445555555555555544332  5555556666666655553 22 2555666666666


Q ss_pred             CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699          465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES  544 (689)
Q Consensus       465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  544 (689)
                      ++|++++.  ..+..+++|++|++++|.+++            + ..+..+++|+.|++++|.+++..+  +..+++|++
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~------------~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITD------------I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCC------------C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCc------------c-hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence            66666543  345566666666666666541            2 345666667777777777665443  666677777


Q ss_pred             EeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699          545 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       545 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  578 (689)
                      |++++|+++.. | .+..+++|+.|++++|++..
T Consensus       183 L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          183 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777777643 3 36666777777777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=8.5e-18  Score=166.84  Aligned_cols=170  Identities=27%  Similarity=0.336  Sum_probs=86.2

Q ss_pred             CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEE
Q 040699          359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL  438 (689)
Q Consensus       359 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  438 (689)
                      +++|+.|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|++|
T Consensus        45 l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            344444444444443 3322  2224444444444444444332  44445555555555544432  124555555555


Q ss_pred             ECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699          439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI  518 (689)
Q Consensus       439 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L  518 (689)
                      ++++|.+.+.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.++            .++. +..+++|
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~------------~~~~-l~~l~~L  180 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS------------DIVP-LAGLTKL  180 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC------------CCGG-GTTCTTC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc------------cchh-hcCCCcc
Confidence            5555555532  2345555555566655555543  34555666666666666554            2222 5556666


Q ss_pred             ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       519 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                      +.|++++|.+++. + .+..+++|+.|++++|++..
T Consensus       181 ~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          181 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            6666666666543 2 25666666666666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.9e-17  Score=158.04  Aligned_cols=155  Identities=20%  Similarity=0.187  Sum_probs=121.9

Q ss_pred             CEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCC
Q 040699          388 ESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN  467 (689)
Q Consensus       388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  467 (689)
                      +.++.+++.+..+....   .++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus        22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            44555555555433321   266777777777777776777778888888888888887666667788888888888888


Q ss_pred             ccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeC
Q 040699          468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL  547 (689)
Q Consensus       468 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  547 (689)
                      ++++..+..|..+++|++|++++|.++            .+|..+..+++|+.|++++|++++..+..|..+++|++|++
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            888777777888899999999888876            67888889999999999999999877788999999999999


Q ss_pred             cCCcCCCCCc
Q 040699          548 SNNKLNGKIP  557 (689)
Q Consensus       548 ~~N~l~~~~~  557 (689)
                      ++|++....+
T Consensus       167 ~~N~~~c~c~  176 (229)
T 3e6j_A          167 FGNPWDCECR  176 (229)
T ss_dssp             TTSCBCTTBG
T ss_pred             eCCCccCCcc
Confidence            9999986543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.4e-17  Score=181.23  Aligned_cols=190  Identities=25%  Similarity=0.310  Sum_probs=114.3

Q ss_pred             CceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEec
Q 040699          337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQL  416 (689)
Q Consensus       337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  416 (689)
                      .+..+.+..+.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.+..+  +..+++|+.|+|
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            34455556565554332  456677777777777776 5542  3347777777777777766544  566667777777


Q ss_pred             cCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699          417 EGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  496 (689)
Q Consensus       417 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  496 (689)
                      ++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+.+ 
T Consensus        95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-  167 (605)
T 1m9s_A           95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-  167 (605)
T ss_dssp             CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-
T ss_pred             cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-
Confidence            77666542  2466666666666666666632  3355666666666666666643  455666666666666665541 


Q ss_pred             cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                                 +++ +..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|++.+
T Consensus       168 -----------~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          168 -----------IVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -----------CGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             -----------chh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence                       222 55666666666666666543  235566666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.5e-18  Score=184.34  Aligned_cols=197  Identities=23%  Similarity=0.279  Sum_probs=152.4

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEE
Q 040699          312 RLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLV  391 (689)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  391 (689)
                      .+..+.+..+.+.+.++.   ..+++|+.|++++|.+... + .+..+++|+.|+|++|++. .++.  +..+++|+.|+
T Consensus        22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEE
T ss_pred             HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEE
Confidence            344456666666644432   2367889999999988753 3 5888999999999999988 4554  45688999999


Q ss_pred             ccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCcccc
Q 040699          392 LSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEG  471 (689)
Q Consensus       392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~  471 (689)
                      |++|.+.+..  .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+
T Consensus        94 Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           94 LDENKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CcCCCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            9999888743  678889999999999988754  4588889999999999988854  568888999999999999987


Q ss_pred             CCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCccccc
Q 040699          472 PIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFS  537 (689)
Q Consensus       472 ~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  537 (689)
                      ..|  +..+++|+.|+|++|.++            .+ +.+..+++|+.|+|++|++.+.....+.
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~------------~l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHIS------------DL-RALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCC------------BC-GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             chh--hccCCCCCEEECcCCCCC------------CC-hHHccCCCCCEEEccCCcCcCCcccccc
Confidence            655  888899999999998876            23 3578889999999999988765433333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=1.1e-17  Score=154.93  Aligned_cols=171  Identities=20%  Similarity=0.338  Sum_probs=128.7

Q ss_pred             CEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcc-cccCCCCCcEEeccccccccccccCCCcccCCCchhhcc
Q 040699          436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPV-EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN  514 (689)
Q Consensus       436 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~  514 (689)
                      +.+++++|.+. .+|..+.  .++++|++++|.+++..+. .|..+++|++|++++|.+++           ..|..|.+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-----------IEPNAFEG   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-----------BCTTTTTT
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC-----------cCHhHcCC
Confidence            67788888776 4555443  3788888888888866654 47888888888888887763           56778888


Q ss_pred             ccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCcc
Q 040699          515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNEN  593 (689)
Q Consensus       515 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~  593 (689)
                      +++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|+.|++++|++.|.++. |+..  .+...
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~  154 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKK  154 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHH
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHc
Confidence            99999999999999988888899999999999999999988899999999999999999999988763 2211  12222


Q ss_pred             cccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCcc
Q 040699          594 SYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLI  629 (689)
Q Consensus       594 ~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~  629 (689)
                      .+.++..       .|..|...++..+.+...+.+.
T Consensus       155 ~~~~~~~-------~C~~P~~l~~~~l~~l~~~~~~  183 (192)
T 1w8a_A          155 SLNGGAA-------RCGAPSKVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CCSGGGC-------BBCSSTTTTTSBGGGSCTTTCC
T ss_pred             CCCCCCC-------CCCCChHHcCCChhhCcHhhcC
Confidence            3333332       5667777777777666665553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=8.3e-18  Score=155.65  Aligned_cols=171  Identities=22%  Similarity=0.326  Sum_probs=137.1

Q ss_pred             CEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccc
Q 040699          436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNL  515 (689)
Q Consensus       436 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l  515 (689)
                      +.+++++|.+. .+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|.++.           ..+..|.++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-----------i~~~~f~~l   77 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----------LSNQSFSNM   77 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-----------CCTTTTTTC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-----------eCHhHccCC
Confidence            68999999998 5665443  68999999999998 567899999999999999998873           556779999


Q ss_pred             cccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCccc
Q 040699          516 TRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENS  594 (689)
Q Consensus       516 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~  594 (689)
                      ++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|+.|++++|++.|.+.- |+..+..  ...
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~--~~~  155 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK--SEY  155 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH--HSS
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH--hcc
Confidence            9999999999999998888999999999999999999987777899999999999999999987652 2222211  100


Q ss_pred             ccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCccc
Q 040699          595 YEGNTFLCGLPLPICRSPATMSEASIGNERDDNLID  630 (689)
Q Consensus       595 ~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~  630 (689)
                      ..       .....|..|+..+|..+.+...+....
T Consensus       156 ~~-------~~~~~C~~P~~l~g~~l~~~~~~~~~~  184 (193)
T 2wfh_A          156 KE-------PGIARCAGPGEMADKLLLTTPSKKFTC  184 (193)
T ss_dssp             CC-------CSCCBEEESGGGTTCBTTTSCGGGCCC
T ss_pred             CC-------CCCcCcCCchHHCCCCcccCChHHeee
Confidence            00       112378889988888888877666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.72  E-value=2.4e-16  Score=162.89  Aligned_cols=267  Identities=14%  Similarity=0.126  Sum_probs=199.5

Q ss_pred             hcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCc
Q 040699          284 ENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLR  363 (689)
Q Consensus       284 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  363 (689)
                      ..+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+..+.+.+|.+|++|+
T Consensus       110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence            3446667776654 4555666677775 6888888776 55 666666665 3688888876 56667777888888899


Q ss_pred             EEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCC
Q 040699          364 ILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNN  443 (689)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n  443 (689)
                      .+++++|.++ .++...|. +.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|.+ .+|+.+.+. +
T Consensus       184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~  257 (401)
T 4fdw_A          184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N  257 (401)
T ss_dssp             EEECTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred             eeecCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence            9998888887 88888887 68888888874 477778888888888888888865 56566677777 688888884 4


Q ss_pred             CCCCcCChhhcCCCCCcEEEcCCCccc-----cCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699          444 NLSGKIPRWLGDLTRLQYIIMPNNHLE-----GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI  518 (689)
Q Consensus       444 ~i~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L  518 (689)
                      .+......+|.++++|+.+.+.+|.+.     .+.+.+|.++++|+.+++.++ ++.           .-..+|.++++|
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~-----------I~~~aF~~c~~L  325 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI-----------LGQGLLGGNRKV  325 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE-----------ECTTTTTTCCSC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE-----------EhhhhhcCCCCc
Confidence            455566778888888888888877654     466777888888888888743 431           344668888888


Q ss_pred             ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCC-CCCEEeccCCcC
Q 040699          519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNL  576 (689)
Q Consensus       519 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l  576 (689)
                      +.+++..| ++.+.+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            88888654 666777788888 888888888888777777777773 677888776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.6e-17  Score=168.50  Aligned_cols=260  Identities=11%  Similarity=0.038  Sum_probs=157.4

Q ss_pred             CCCCcEEEeeCCCCC--CCCCCCCCCCCCcCEEEccCCcCcccCChhhhhc--------CCCceEEEccCCcCCcccccc
Q 040699          286 NTKLRQLSLVNDSLA--GPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDI--------LPSLHVFNISMNALDGSIPSS  355 (689)
Q Consensus       286 ~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~  355 (689)
                      +++|+.|+|++|.+.  ......   ++.+..+.+..+    .+|...|..        +++|+.+++.+ .++.+.+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            667777777777766  222111   122344444444    345555555        67777777766 666566666


Q ss_pred             ccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCC----cCCccCcccccCCCCcc-EEeccCCccccccccc-c
Q 040699          356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNN----SLKGHMFSRNFNLANLM-SLQLEGNHFIGEISQS-L  429 (689)
Q Consensus       356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~-~  429 (689)
                      |.+|++|+.+++++|.+. .++..+|.++.++..+....+    ....+....|.++..|+ .+.+.....   ++.. +
T Consensus       120 F~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~---l~~~~~  195 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK---LEDEIM  195 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC---HHHHHH
T ss_pred             hhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCc---HHHHHh
Confidence            777777777777777766 666666666666665555442    22333344455555555 444433221   1111 1


Q ss_pred             ---cCCCCCCEEECCCCCCCCcCChhh-cCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCccc
Q 040699          430 ---SKCSSLEGLFLNNNNLSGKIPRWL-GDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLI  505 (689)
Q Consensus       430 ---~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~  505 (689)
                         ....+++.+.+.++-.. .....+ ..+++|+.+++++|+++.+.+.+|.++++|+.+++.+| ++.          
T Consensus       196 ~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~----------  263 (329)
T 3sb4_A          196 KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT----------  263 (329)
T ss_dssp             HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE----------
T ss_pred             hcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce----------
Confidence               12334455555443111 111111 23677888888887777777777888888888888776 431          


Q ss_pred             CCCchhhccccccc-eEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEec
Q 040699          506 GPIPPKIGNLTRIQ-TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  571 (689)
Q Consensus       506 ~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  571 (689)
                       ..+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|++..+.+.+|.++++|+.++.
T Consensus       264 -I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          264 -IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             -ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             -ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             4445678888888 888877 676677778888888888888888888777778888888887753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=8.7e-18  Score=164.00  Aligned_cols=170  Identities=19%  Similarity=0.257  Sum_probs=84.2

Q ss_pred             CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEE
Q 040699          359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL  438 (689)
Q Consensus       359 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  438 (689)
                      +.++..++++++.+. .++  .+..+++|++|++++|.+....  .+..+++|++|++++|++.+..+  +..+++|++|
T Consensus        18 l~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            444555666666665 333  1223556666666666655432  34445555555555555544332  4555555555


Q ss_pred             ECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699          439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI  518 (689)
Q Consensus       439 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L  518 (689)
                      ++++|++.+ ++. +.. ++|++|++++|++++.                                     +.+..+++|
T Consensus        91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-------------------------------------~~l~~l~~L  130 (263)
T 1xeu_A           91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-------------------------------------DSLIHLKNL  130 (263)
T ss_dssp             ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-------------------------------------GGGTTCTTC
T ss_pred             ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-------------------------------------hhhcCcccc
Confidence            555555542 221 111 4444444444444432                                     124445555


Q ss_pred             ceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699          519 QTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  579 (689)
Q Consensus       519 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  579 (689)
                      +.|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++.+.
T Consensus       131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            5555555555433 1 344555555555555555543  3444555555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3e-17  Score=152.94  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=15.6

Q ss_pred             CCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCc
Q 040699          358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS  396 (689)
Q Consensus       358 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  396 (689)
                      .+++|+.|++++|.+. .++ . +..+++|++|++++|.
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~   77 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIH   77 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCC
T ss_pred             hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCC
Confidence            3444555555555444 333 1 2224444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.5e-17  Score=150.65  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=82.3

Q ss_pred             CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEE
Q 040699          384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII  463 (689)
Q Consensus       384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  463 (689)
                      +++|+.|++++|.+....  .+..+++|++|++++|.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            445556666665555332  34555566666666554432  23455556666666666655544555555566666666


Q ss_pred             cCCCccccCCcccccCCCCCcEEeccccc-cccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCC
Q 040699          464 MPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV  542 (689)
Q Consensus       464 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  542 (689)
                      +++|.+++..+..+..+++|++|++++|. ++            .+| .+..+++|+.|++++|.+++. + .+..+++|
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L  183 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT------------DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKL  183 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC------------CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc------------ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCC
Confidence            66666655455555566666666666655 33            223 355566666666666666542 2 45556666


Q ss_pred             CEEeCcCCcCC
Q 040699          543 ESLDLSNNKLN  553 (689)
Q Consensus       543 ~~L~L~~N~l~  553 (689)
                      ++|++++|++.
T Consensus       184 ~~L~l~~N~i~  194 (197)
T 4ezg_A          184 NQLYAFSQTIG  194 (197)
T ss_dssp             CEEEECBC---
T ss_pred             CEEEeeCcccC
Confidence            66666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.7e-17  Score=168.32  Aligned_cols=286  Identities=15%  Similarity=0.100  Sum_probs=202.6

Q ss_pred             cCCCCcEEEeeCCCCCCCCCCCCCC-CCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccC-----
Q 040699          285 NNTKLRQLSLVNDSLAGPFRLPIHS-HKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGN-----  358 (689)
Q Consensus       285 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----  358 (689)
                      .+++++.|.++++ +.......+.. +++|+.|+|++|++.. .... ...++.+..+.+..+.   +.+.+|.+     
T Consensus        23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~-~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~   96 (329)
T 3sb4_A           23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGK-AGTYPNGKFYIYMANF---VPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEES-SSSSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred             hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCc-cccccccccccccccc---cCHHHhccccccc
Confidence            3457888888764 22111112222 6889999999998861 1111 0112234455555553   34456777     


Q ss_pred             ---CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc----cccccccccC
Q 040699          359 ---MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF----IGEISQSLSK  431 (689)
Q Consensus       359 ---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~----~~~~~~~~~~  431 (689)
                         +++|+.+++++ .++ .++..+|.+|++|+.+++++|.+..+....|.++.++..+....+..    .......|..
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               99999999999 887 89999999999999999999999888889998888888887766322    2234456777


Q ss_pred             CCCCC-EEECCCCCCCCcCChh----hcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccC
Q 040699          432 CSSLE-GLFLNNNNLSGKIPRW----LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIG  506 (689)
Q Consensus       432 l~~L~-~L~L~~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~  506 (689)
                      +.+|+ .+.+....   .++..    .....+++.+.+.++-...........+++|+.+++++|.++.           
T Consensus       175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-----------  240 (329)
T 3sb4_A          175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-----------  240 (329)
T ss_dssp             SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-----------
T ss_pred             ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-----------
Confidence            88887 55554432   22221    1235677777777653221111112348999999999998872           


Q ss_pred             CCchhhccccccceEeccCcccccCCcccccCCCCCC-EEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699          507 PIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVE-SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA  585 (689)
Q Consensus       507 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  585 (689)
                      ..+.+|.++++|+++++.+| ++.+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|.++...+..+.
T Consensus       241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence            44567999999999999998 8878889999999999 999999 78878889999999999999999999877666676


Q ss_pred             cccccCccc
Q 040699          586 QFATFNENS  594 (689)
Q Consensus       586 ~~~~~~~~~  594 (689)
                      .+.+++.++
T Consensus       319 ~~~~L~~ly  327 (329)
T 3sb4_A          319 NGVPSKLIY  327 (329)
T ss_dssp             TTCCCCEEE
T ss_pred             CCcchhhhc
Confidence            666666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.6e-17  Score=160.62  Aligned_cols=169  Identities=20%  Similarity=0.254  Sum_probs=139.1

Q ss_pred             CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699          336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ  415 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (689)
                      .++..++++++.+++..  .+..+++|+.|++++|.+. .++  .+..+++|++|++++|.+.+..+  +..+++|+.|+
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            46788889999988543  5888999999999999998 777  34559999999999999998766  88999999999


Q ss_pred             ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699          416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  495 (689)
Q Consensus       416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  495 (689)
                      +++|++.+..+  +.. ++|++|++++|.+.+.  ..+..+++|+.|++++|++++. + .+..+++|++|++++|.+++
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            99999986433  233 8999999999999853  3588999999999999999865 3 67888888888888888762


Q ss_pred             ccccCCCcccCCCchhhccccccceEeccCcccccC
Q 040699          496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS  531 (689)
Q Consensus       496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  531 (689)
                                  . ..+..+++|+.|++++|++...
T Consensus       165 ------------~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 ------------T-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ------------C-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ------------h-HHhccCCCCCEEeCCCCcccCC
Confidence                        2 4567778888888888887754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1e-16  Score=148.38  Aligned_cols=174  Identities=22%  Similarity=0.305  Sum_probs=117.7

Q ss_pred             cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCCh-hhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699          412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPR-WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  490 (689)
Q Consensus       412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  490 (689)
                      ++++++++.+.. +|..+.  .++++|++++|.+.+..+. .|..+++|++|++++|++++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            456666666543 333332  2677777777777755543 477777888888888888777777788888888888888


Q ss_pred             cccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchh-ccCCCCCCEE
Q 040699          491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVF  569 (689)
Q Consensus       491 n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L  569 (689)
                      |.+++           ..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+..+.. +.  ..++..
T Consensus        88 N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~  154 (192)
T 1w8a_A           88 NKIKE-----------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKK  154 (192)
T ss_dssp             CCCCE-----------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHH
T ss_pred             CcCCc-----------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHc
Confidence            77663           45566788888888888888888888888888999999999999988765421 11  112222


Q ss_pred             eccCCcCcCCCCCccccccccCcccccCCcCCCCC
Q 040699          570 SVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGL  604 (689)
Q Consensus       570 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~  604 (689)
                      .+.++...|..|..   +......++..+.+.|..
T Consensus       155 ~~~~~~~~C~~P~~---l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          155 SLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCC
T ss_pred             CCCCCCCCCCCChH---HcCCChhhCcHhhcCcCC
Confidence            34455666766653   334444556666776753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1e-15  Score=158.19  Aligned_cols=265  Identities=11%  Similarity=0.110  Sum_probs=180.6

Q ss_pred             CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEE
Q 040699          262 HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVF  341 (689)
Q Consensus       262 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  341 (689)
                      ..++.+.+.+. +. .++...|..+ +|+.+.+.++ ++.+...+|.++ +|+.+.+.. .+. .++...|..+++|+.+
T Consensus       113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred             CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence            34445544332 22 2333334553 5777776554 555556666664 577777775 454 5666666667777777


Q ss_pred             EccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcc
Q 040699          342 NISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF  421 (689)
Q Consensus       342 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  421 (689)
                      ++.+|.++.+...+|. +.+|+.+.+..+ +. .++..+|.++++|+.+++..+ +..+...+|.+ .+|+.+.+. +.+
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            7777777766666666 467777777744 55 777777777777777777753 56666666766 677777774 345


Q ss_pred             cccccccccCCCCCCEEECCCCCCC-----CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccc
Q 040699          422 IGEISQSLSKCSSLEGLFLNNNNLS-----GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR  496 (689)
Q Consensus       422 ~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  496 (689)
                      ..+...+|.+|++|+.+++.+|.+.     ...+.+|.++++|+.+.+.+ .++.+...+|.++++|+.+++..+ ++  
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~--  335 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT--  335 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC--
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc--
Confidence            6566777888888888888776554     34566788888888888884 466677778888888888888655 33  


Q ss_pred             cccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCC-CCCEEeCcCCcCC
Q 040699          497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLK-HVESLDLSNNKLN  553 (689)
Q Consensus       497 l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~  553 (689)
                               .....+|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.+.
T Consensus       336 ---------~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          336 ---------QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ---------EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ---------EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence                     1345678888 888888888888777777788774 7888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=2.5e-15  Score=156.24  Aligned_cols=313  Identities=15%  Similarity=0.123  Sum_probs=139.7

Q ss_pred             cCccccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccc
Q 040699          127 ILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPL  206 (689)
Q Consensus       127 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  206 (689)
                      |...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++ ++ .++..+|.++.+|+.+.+..+- . .+....+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~aF  136 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEAF  136 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eecceee
Confidence            34456666666776666543 55455566667777777766544 33 4555566666666665554331 1 1122223


Q ss_pred             cCCCCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcC
Q 040699          207 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENN  286 (689)
Q Consensus       207 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~  286 (689)
                      .++..++......                              ........+..+.+|+.+.+.++..  .++...|..+
T Consensus       137 ~~~~~~~~~~~~~------------------------------~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c  184 (394)
T 4fs7_A          137 KGCDFKEITIPEG------------------------------VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGC  184 (394)
T ss_dssp             TTCCCSEEECCTT------------------------------CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTC
T ss_pred             ecccccccccCcc------------------------------ccccchhhhcccCCCcEEecCCccc--eeccccccCC
Confidence            2222111111000                              0000112344455555555543321  2333344555


Q ss_pred             CCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEe
Q 040699          287 TKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILD  366 (689)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  366 (689)
                      ++|+.+.+..+ ++.+....|.++..|+.+.+..+...  +...++. ..+|+.+.+... +......+|.++..++.+.
T Consensus       185 ~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~  259 (394)
T 4fs7_A          185 GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESIS  259 (394)
T ss_dssp             TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEE
T ss_pred             CCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeEE
Confidence            55555555443 33344445555555555555443321  2222222 344555555432 2223334455555555555


Q ss_pred             ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCC
Q 040699          367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  446 (689)
                      +..+..  .+....|..+..++.+....+.+   ....|..+.+|+.+.+.++ +..+...+|.+|.+|+.+++.++ +.
T Consensus       260 ~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~  332 (394)
T 4fs7_A          260 IQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE  332 (394)
T ss_dssp             ECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             cCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence            544422  34444444455555554443321   2233444445555544432 33333444444455555444322 33


Q ss_pred             CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecc
Q 040699          447 GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS  489 (689)
Q Consensus       447 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  489 (689)
                      .....+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            233344444444444444433 333333444444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=4.3e-15  Score=154.51  Aligned_cols=309  Identities=13%  Similarity=0.048  Sum_probs=144.7

Q ss_pred             HHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCc
Q 040699           50 SIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILD  129 (689)
Q Consensus        50 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~  129 (689)
                      ++.. |.+|+.+.+..+ ++ .+...+|.+|++|+.+++..+ +   ..+....+.++++|+.+.+..+..     .+..
T Consensus        66 AF~~-c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l---~~I~~~aF~~c~~L~~i~~p~~l~-----~i~~  133 (394)
T 4fs7_A           66 AFQG-CRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-V---KMIGRCTFSGCYALKSILLPLMLK-----SIGV  133 (394)
T ss_dssp             TTTT-CTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-C---CEECTTTTTTCTTCCCCCCCTTCC-----EECT
T ss_pred             HhhC-CCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-c---eEccchhhcccccchhhcccCcee-----eecc
Confidence            4444 666666666533 33 334446666666776666543 2   344444555566666666554311     1223


Q ss_pred             cccCCCCCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCcceeecCcccccCC
Q 040699          130 QGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNH  209 (689)
Q Consensus       130 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  209 (689)
                      .+|.++..++.......  ......+|.++++|+.+.+.++. . .++...|.++.+|+.+++..+ ++ .+....+.++
T Consensus       134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~  207 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC  207 (394)
T ss_dssp             TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred             eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence            35555554333333222  22344567777777777776553 2 455556777777777777655 22 2333456666


Q ss_pred             CCcceeeccCCcccccccccccCccCccccceEeecccCCCCCCCCccccCCCCCCEEEccCCcCcCCCChHHHhcCCCC
Q 040699          210 SRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKL  289 (689)
Q Consensus       210 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L  289 (689)
                      ..|+.+.+..+....                              .........|+.+.+.... . .+....+..+..+
T Consensus       208 ~~L~~i~~~~~~~~i------------------------------~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l  255 (394)
T 4fs7_A          208 ILLENMEFPNSLYYL------------------------------GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDL  255 (394)
T ss_dssp             TTCCBCCCCTTCCEE------------------------------CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSC
T ss_pred             cccceeecCCCceEe------------------------------ehhhcccCCCceEEECCCc-e-ecccccccccccc
Confidence            666665544432110                              0001112233333332211 0 1112223445555


Q ss_pred             cEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccC
Q 040699          290 RQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSN  369 (689)
Q Consensus       290 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  369 (689)
                      +.+.+..+ ...+....|..+..++.+......    ++...+..+.+|+.+.+..+ +..+...+|.++.+|+.+++..
T Consensus       256 ~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          256 ESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             CEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             eeEEcCCC-cceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence            55555433 222333445555555555444332    22333333445555555433 3333344455555555555543


Q ss_pred             CcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc
Q 040699          370 NQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE  417 (689)
Q Consensus       370 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  417 (689)
                      + ++ .+...+|.+|.+|+.+.+..+ +..+...+|.+|++|+.+++.
T Consensus       330 ~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          330 L-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             T-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             c-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            2 33 444444444445554444433 334444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.4e-18  Score=186.07  Aligned_cols=121  Identities=23%  Similarity=0.306  Sum_probs=66.0

Q ss_pred             CCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhc
Q 040699          434 SLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIG  513 (689)
Q Consensus       434 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~  513 (689)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|++|++++|.++            .+| .+.
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~------------~lp-~l~  505 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE------------NVD-GVA  505 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC------------CCG-GGT
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC------------CCc-ccC
Confidence            35566666666653 343 555566666666666655 44555555666666665555554            234 455


Q ss_pred             cccccceEeccCcccccCC-cccccCCCCCCEEeCcCCcCCCCCch---hccCCCCCCEEe
Q 040699          514 NLTRIQTLNLSHNDLTGSI-PSTFSNLKHVESLDLSNNKLNGKIPH---QLVELKTLEVFS  570 (689)
Q Consensus       514 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~  570 (689)
                      .+++|+.|+|++|++++.. |..++.+++|+.|+|++|++++..|.   .+..+++|+.|+
T Consensus       506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            5555666666666655544 55555556666666666655544332   122245555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.2e-17  Score=180.78  Aligned_cols=204  Identities=20%  Similarity=0.186  Sum_probs=130.0

Q ss_pred             CCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCc-------------CCccccccccCCCCCcEEe-ccCCccc
Q 040699          308 HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNA-------------LDGSIPSSFGNMNFLRILD-LSNNQLT  373 (689)
Q Consensus       308 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~  373 (689)
                      ..++.|+.|++++|.++ .+|..+.. +++|+.|++++|.             ..+..|..+.++++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            44677888888888887 77777665 6778888876654             3445566666777777776 5555433


Q ss_pred             ccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhh
Q 040699          374 GEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWL  453 (689)
Q Consensus       374 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l  453 (689)
                       .++           .+.+++|.+....+      ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+
T Consensus       424 -~L~-----------~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~  482 (567)
T 1dce_A          424 -DLR-----------SKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL  482 (567)
T ss_dssp             -HHH-----------HHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred             -hhh-----------hhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence             222           22223333332211      236667777776665 344 667777777777777776 566677


Q ss_pred             cCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCC-chhhccccccceEeccCcccccCC
Q 040699          454 GDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPI-PPKIGNLTRIQTLNLSHNDLTGSI  532 (689)
Q Consensus       454 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~  532 (689)
                      ..+++|+.|++++|++++ +| .+..+++|++|++++|.+++           .. |..+..+++|+.|+|++|++++.+
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~-----------~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-----------SAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-----------SSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC-----------CCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            777777777777777775 44 67777777777777776652           33 677777777777777777777554


Q ss_pred             ccc---ccCCCCCCEEeC
Q 040699          533 PST---FSNLKHVESLDL  547 (689)
Q Consensus       533 ~~~---~~~l~~L~~L~L  547 (689)
                      |..   +..+++|+.|++
T Consensus       550 ~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          550 GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCTTHHHHHCTTCSEEEC
T ss_pred             cHHHHHHHHCcccCccCC
Confidence            422   234677777754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=140.54  Aligned_cols=128  Identities=20%  Similarity=0.297  Sum_probs=89.1

Q ss_pred             cEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccc
Q 040699          412 MSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  491 (689)
Q Consensus       412 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  491 (689)
                      +.++++++.+... |..+  .++|++|++++|.+. .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4677777776543 3333  246777777777776 55667777777777777777777766677777777777777777


Q ss_pred             ccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          492 NISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       492 ~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                      .++.           ..+..|.++++|+.|+|++|.++...+..|..+++|++|++++|++..
T Consensus        89 ~l~~-----------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRC-----------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCB-----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCE-----------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            6652           445567777777777777777776666667777777777777777754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1e-15  Score=138.54  Aligned_cols=132  Identities=23%  Similarity=0.280  Sum_probs=77.1

Q ss_pred             CCCCEEECCCCCCC-CcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699          433 SSLEGLFLNNNNLS-GKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK  511 (689)
Q Consensus       433 ~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~  511 (689)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++           .+|..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~   90 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG-----------GLDML   90 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS-----------CCCHH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch-----------HHHHH
Confidence            45555555555554 44455555556666666666665543  455556666666666665542           24555


Q ss_pred             hccccccceEeccCcccccCCc-ccccCCCCCCEEeCcCCcCCCCCc---hhccCCCCCCEEeccCCcCc
Q 040699          512 IGNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEVFSVAYNNLS  577 (689)
Q Consensus       512 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~  577 (689)
                      +..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+.
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5556666666666666654322 456666666666666666665444   35666666666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=2e-15  Score=136.71  Aligned_cols=134  Identities=23%  Similarity=0.235  Sum_probs=118.5

Q ss_pred             CCCCccEEeccCCccc-ccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699          407 NLANLMSLQLEGNHFI-GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI  485 (689)
Q Consensus       407 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  485 (689)
                      ..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++++..|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3578999999999987 56788889999999999999999865  77889999999999999999878888888999999


Q ss_pred             EeccccccccccccCCCcccCCCc--hhhccccccceEeccCcccccCCc---ccccCCCCCCEEeCcCCcCCC
Q 040699          486 LDISDNNISGRLDLSCNKLIGPIP--PKIGNLTRIQTLNLSHNDLTGSIP---STFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       486 L~l~~n~~~~~l~ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~  554 (689)
                      |++++|.++            .+|  ..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       100 L~Ls~N~l~------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKLK------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSCC------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCccC------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999987            333  678899999999999999997665   488999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=5.7e-15  Score=134.86  Aligned_cols=133  Identities=21%  Similarity=0.245  Sum_probs=105.7

Q ss_pred             CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcc
Q 040699          435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN  514 (689)
Q Consensus       435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~  514 (689)
                      .+.++++++.+. .+|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++           ..+..+..
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~   74 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-----------LPDGVFDK   74 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-----------CCTTTTTT
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-----------eChhHccC
Confidence            456777777776 344333  3678888888888887766777888888888888887762           44455788


Q ss_pred             ccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       515 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      +++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.|.+|
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8899999999999987777788889999999999999997777777888999999999999998876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=1.8e-16  Score=176.99  Aligned_cols=218  Identities=22%  Similarity=0.265  Sum_probs=116.1

Q ss_pred             CCceEEEccCCcCCccccccccCCCCCcE-----EeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCC
Q 040699          336 PSLHVFNISMNALDGSIPSSFGNMNFLRI-----LDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN  410 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-----L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  410 (689)
                      +.++.|++..|.+... +..+.....|..     ++++.|.+.  ++...+..+++|+.|+|++|.+..+. ..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCSCCC-GGGGGCCS
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCC
Confidence            4688888988887753 333222222222     233333332  45556667899999999999998544 44558999


Q ss_pred             ccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccc
Q 040699          411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD  490 (689)
Q Consensus       411 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  490 (689)
                      |++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|++|+|++
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            999999999988 67888999999999999999998 67888999999999999999998 5677799999999999999


Q ss_pred             cccccccccCCCcccCCCchhhccccc-cceEeccCcccccCCcccccCCCCCCEEeCcCC--------cCCCCCchhcc
Q 040699          491 NNISGRLDLSCNKLIGPIPPKIGNLTR-IQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN--------KLNGKIPHQLV  561 (689)
Q Consensus       491 n~~~~~l~ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~  561 (689)
                      |.+++           .+|..+..+.. +..|++++|.+++.+|.      .|+.|++++|        .+.+..+..+.
T Consensus       326 N~l~~-----------~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~  388 (727)
T 4b8c_D          326 NPLEK-----------QFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLAT  388 (727)
T ss_dssp             SCCCS-----------HHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------
T ss_pred             CccCC-----------CChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhh
Confidence            98763           56666655432 23478999999877765      4566777777        34444444455


Q ss_pred             CCCCCCEEeccCCcCc
Q 040699          562 ELKTLEVFSVAYNNLS  577 (689)
Q Consensus       562 ~l~~L~~L~l~~N~l~  577 (689)
                      .+..+....+++|-+.
T Consensus       389 ~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          389 DLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -------------CCC
T ss_pred             cccccceeeeeccccc
Confidence            5666677778888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=4.1e-16  Score=174.15  Aligned_cols=218  Identities=22%  Similarity=0.226  Sum_probs=119.6

Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCceE-----EEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCC
Q 040699          311 KRLGMLDISNNNFRGHIPLEIGDILPSLHV-----FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCV  385 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~-----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  385 (689)
                      +.++.|++.++.+. .++..... ...|..     +++..|.+. ..++.|..++.|+.|+|++|.+. .+|..++. ++
T Consensus       173 ~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YD  247 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG-CC
T ss_pred             CccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CC
Confidence            56788999998887 44443322 112222     223333333 45778999999999999999998 89988884 99


Q ss_pred             CCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcC
Q 040699          386 NLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMP  465 (689)
Q Consensus       386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  465 (689)
                      +|++|+|++|.++ ..+..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            9999999999999 45677899999999999999998 66888999999999999999998 778889999999999999


Q ss_pred             CCccccCCcccccCCCC-CcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc--------ccccCCcccc
Q 040699          466 NNHLEGPIPVEFCQLDL-LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN--------DLTGSIPSTF  536 (689)
Q Consensus       466 ~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~  536 (689)
                      +|.+++.+|..+..+.. +..+++++|.++           +.+|.      .|+.|+++.|        .+.+..+..+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~-----------~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~  387 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPE-----------IPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLA  387 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCCC------C---------------------------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCccc-----------CcCcc------ccceeEeecccccccccCCccccccchh
Confidence            99999888888765422 223556666554           46664      4566777776        4444444555


Q ss_pred             cCCCCCCEEeCcCCcCC
Q 040699          537 SNLKHVESLDLSNNKLN  553 (689)
Q Consensus       537 ~~l~~L~~L~L~~N~l~  553 (689)
                      ..+..++...+++|-+.
T Consensus       388 ~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          388 TDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------CCC
T ss_pred             hcccccceeeeeccccc
Confidence            66677777788888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=2e-15  Score=133.65  Aligned_cols=65  Identities=20%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             CchhhccccccceEeccCcccccC-CcccccCCCCCCEEeCcCCcCCCCCc---hhccCCCCCCEEecc
Q 040699          508 IPPKIGNLTRIQTLNLSHNDLTGS-IPSTFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEVFSVA  572 (689)
Q Consensus       508 ~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~  572 (689)
                      +|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|+++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            333344444444444444444432 12344444455555555555443333   234444555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.6e-15  Score=132.82  Aligned_cols=131  Identities=21%  Similarity=0.235  Sum_probs=108.1

Q ss_pred             CCCCccEEeccCCccc-ccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcE
Q 040699          407 NLANLMSLQLEGNHFI-GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI  485 (689)
Q Consensus       407 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  485 (689)
                      ..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3578999999999987 56777888899999999999988855  67888899999999999998778888888899999


Q ss_pred             EeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCc---ccccCCCCCCEEeCcC
Q 040699          486 LDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP---STFSNLKHVESLDLSN  549 (689)
Q Consensus       486 L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~  549 (689)
                      |++++|.+++.          ..+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        93 L~ls~N~i~~~----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDL----------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSH----------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCCh----------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999987620          123678888999999999999987665   5788899999998874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=7.3e-14  Score=127.45  Aligned_cols=128  Identities=22%  Similarity=0.218  Sum_probs=70.4

Q ss_pred             cEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCC
Q 040699          363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN  442 (689)
Q Consensus       363 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  442 (689)
                      +.++++++++. .+|...   .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            44555555554 444333   23555555555555555444455555555555555555544444555556666666666


Q ss_pred             CCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699          443 NNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       443 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  494 (689)
                      |.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            6655444445555566666666666655444444555555666655555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.9e-14  Score=131.11  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcc--c
Q 040699          458 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS--T  535 (689)
Q Consensus       458 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~  535 (689)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++           ..+..+..+++|++|++++|.++. +|.  .
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~  108 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-----------IGEGLDQALPDLTELILTNNSLVE-LGDLDP  108 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-----------ECSCHHHHCTTCCEEECCSCCCCC-GGGGGG
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-----------cCcchhhcCCCCCEEECCCCcCCc-chhhHh
Confidence            444444444444432  234444444444444444431           112223444555555555555542 222  4


Q ss_pred             ccCCCCCCEEeCcCCcCCCCCch----hccCCCCCCEEeccCCcC
Q 040699          536 FSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVFSVAYNNL  576 (689)
Q Consensus       536 ~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l  576 (689)
                      +..+++|++|++++|++.. .|.    .+..+++|+.||+++|..
T Consensus       109 l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          109 LASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            4455555555555555542 233    244555555555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=7.6e-14  Score=127.14  Aligned_cols=135  Identities=19%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             cccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCC
Q 040699          355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS  434 (689)
Q Consensus       355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  434 (689)
                      .+..+.+|+.|++++|.+. .++. .....++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3556667777777777776 4543 333234777777777777664  45666777777777777776555555567777


Q ss_pred             CCEEECCCCCCCCcCCh--hhcCCCCCcEEEcCCCccccCCcc---cccCCCCCcEEeccccccc
Q 040699          435 LEGLFLNNNNLSGKIPR--WLGDLTRLQYIIMPNNHLEGPIPV---EFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       435 L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~  494 (689)
                      |++|++++|.+. .+|.  .+..+++|++|++++|++....+.   .+..+++|++||+++|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777777775 3443  566666777777777766633221   2556666666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=4e-16  Score=145.37  Aligned_cols=132  Identities=24%  Similarity=0.277  Sum_probs=98.6

Q ss_pred             cccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCC
Q 040699          428 SLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGP  507 (689)
Q Consensus       428 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~  507 (689)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++            .
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~------------~  107 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA------------S  107 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC------------C
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC------------c
Confidence            67778888888888888775 55 6777888888888888887 45666667788888888888776            2


Q ss_pred             CchhhccccccceEeccCcccccCCc-ccccCCCCCCEEeCcCCcCCCCCch----------hccCCCCCCEEeccCCcC
Q 040699          508 IPPKIGNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNNKLNGKIPH----------QLVELKTLEVFSVAYNNL  576 (689)
Q Consensus       508 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~l~~N~l  576 (689)
                      +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|.          .+..+++|+.||  +|++
T Consensus       108 l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          108 LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            33 57778888888888888875433 4677888888888888888766554          266778888776  6665


Q ss_pred             c
Q 040699          577 S  577 (689)
Q Consensus       577 ~  577 (689)
                      +
T Consensus       185 ~  185 (198)
T 1ds9_A          185 D  185 (198)
T ss_dssp             T
T ss_pred             C
Confidence            5

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.48  E-value=4.8e-12  Score=131.45  Aligned_cols=113  Identities=14%  Similarity=0.224  Sum_probs=54.6

Q ss_pred             chhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcC
Q 040699          376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGD  455 (689)
Q Consensus       376 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~  455 (689)
                      +...+|.++.+|+.+.+..+ +..+....|.++++|+.+.+.. .+..+....|.+|.+|+.+++..+ ++.....+|.+
T Consensus       256 i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cccceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            33444444445555544332 2233344444555555555532 233344445555555555555433 33333445555


Q ss_pred             CCCCcEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699          456 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  492 (689)
Q Consensus       456 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  492 (689)
                      +.+|+.+.+..+ ++.+...+|.++++|+.+++.++.
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            555555555433 443445555555666666555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.4e-13  Score=121.71  Aligned_cols=110  Identities=23%  Similarity=0.284  Sum_probs=86.4

Q ss_pred             CcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccC
Q 040699          459 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSN  538 (689)
Q Consensus       459 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  538 (689)
                      .+.+++++|+++. +|..+  .++|++|++++|.+++           ..|..|.++++|++|+|++|++++..+..|..
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~   76 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITK-----------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK   76 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCC-----------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCc-----------cChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence            4566777776663 34333  2677777777777652           55677888888888888888888777778889


Q ss_pred             CCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          539 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       539 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      +++|++|+|++|++++..+..|..+++|+.|++++|++.|.+++
T Consensus        77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            99999999999999987777888899999999999999988763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=3.3e-13  Score=121.81  Aligned_cols=109  Identities=24%  Similarity=0.276  Sum_probs=97.3

Q ss_pred             CcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccC
Q 040699          483 LQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE  562 (689)
Q Consensus       483 L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  562 (689)
                      .+.+++++|.++            .+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|..
T Consensus        11 ~~~l~~s~n~l~------------~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~   76 (170)
T 3g39_A           11 GTTVDCSGKSLA------------SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK   76 (170)
T ss_dssp             TTEEECTTSCCS------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CCEEEeCCCCcC------------ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence            467777777766            5676553  78999999999999988999999999999999999999888888899


Q ss_pred             CCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699          563 LKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       563 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      +++|+.|++++|.+++..+..+..+..++.+++.+||+.|+|+
T Consensus        77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999999999999998877778889999999999999999985

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=9.8e-12  Score=129.10  Aligned_cols=294  Identities=11%  Similarity=0.111  Sum_probs=188.4

Q ss_pred             cccCC-CCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCC---CCCCCCCCCCCCCCcCEEEccCCcCcccCChhhh
Q 040699          257 FLYHQ-HDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDS---LAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIG  332 (689)
Q Consensus       257 ~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  332 (689)
                      .+.++ ..|+.+.+... +. .+....|..+.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ ++ .++...+
T Consensus        58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred             hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence            34445 34777777643 33 3445557788888888886543   55555667778888887777654 33 5666666


Q ss_pred             hcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCcc
Q 040699          333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLM  412 (689)
Q Consensus       333 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  412 (689)
                      ..+.+|+.+.+..+ +..+...+|.++..|+.+.+.++ +. .+...+|. ..+|+.+.+..+ +..+....|.++.+++
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~  208 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALS  208 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCc-ccccccchhhhccccc
Confidence            66778888888654 34455667788888888888664 44 66677776 456888877653 4445566677777777


Q ss_pred             EEeccCCccccccccc-------------ccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccC
Q 040699          413 SLQLEGNHFIGEISQS-------------LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQ  479 (689)
Q Consensus       413 ~L~L~~n~~~~~~~~~-------------~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  479 (689)
                      ................             +.....+..+.+.. .+......+|.++..|+.+.+..+... +...+|.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~  286 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN  286 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence            7766544332111111             11223334444432 222234557777888888888765433 56667788


Q ss_pred             CCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchh
Q 040699          480 LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ  559 (689)
Q Consensus       480 l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  559 (689)
                      +++|+.+.+..+ ++           .....+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+
T Consensus       287 c~~L~~i~l~~~-i~-----------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a  352 (394)
T 4gt6_A          287 CPALQDIEFSSR-IT-----------ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA  352 (394)
T ss_dssp             CTTCCEEECCTT-CC-----------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred             ccccccccCCCc-cc-----------ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence            888888887543 22           133456788888888888754 65566677888888888888654 66566678


Q ss_pred             ccCCCCCCEEeccCCc
Q 040699          560 LVELKTLEVFSVAYNN  575 (689)
Q Consensus       560 ~~~l~~L~~L~l~~N~  575 (689)
                      |.++++|+.+++.++.
T Consensus       353 F~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          353 FSNCTALNNIEYSGSR  368 (394)
T ss_dssp             GTTCTTCCEEEESSCH
T ss_pred             hhCCCCCCEEEECCce
Confidence            8888888888887764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.5e-15  Score=140.02  Aligned_cols=138  Identities=24%  Similarity=0.296  Sum_probs=116.8

Q ss_pred             ccCCCCCCEEECCCCCCCCcCCh------hhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCC
Q 040699          429 LSKCSSLEGLFLNNNNLSGKIPR------WLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCN  502 (689)
Q Consensus       429 ~~~l~~L~~L~L~~n~i~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n  502 (689)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++        
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--------   83 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--------   83 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--------
Confidence            45556667777777776666555      89999999999999999996 55 8899999999999999987        


Q ss_pred             cccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCc-hhccCCCCCCEEeccCCcCcCCCC
Q 040699          503 KLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       503 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                          .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|+++...+ ..+..+++|+.|++++|++.+.+|
T Consensus        84 ----~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           84 ----KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ----SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             ----cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence                577788888999999999999996 44 68889999999999999996543 578899999999999999988766


Q ss_pred             C
Q 040699          582 E  582 (689)
Q Consensus       582 ~  582 (689)
                      .
T Consensus       158 ~  158 (198)
T 1ds9_A          158 E  158 (198)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=9.2e-13  Score=119.25  Aligned_cols=108  Identities=24%  Similarity=0.276  Sum_probs=79.8

Q ss_pred             cEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCC
Q 040699          460 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNL  539 (689)
Q Consensus       460 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  539 (689)
                      +.+++++|+++ .+|..+.  ++|++|++++|.+++           ..|..|.++++|++|+|++|+++++.+..|..+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l   80 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITK-----------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL   80 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccc-----------cCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence            45666666665 3343332  667777777776652           456677778888888888888887666677888


Q ss_pred             CCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          540 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       540 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      ++|++|+|++|+|++..+..|..+++|+.|++++|++.|.++
T Consensus        81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            888888888888887766678888888899999998887765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=9.2e-13  Score=119.25  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=95.8

Q ss_pred             cEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCC
Q 040699          484 QILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  563 (689)
Q Consensus       484 ~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  563 (689)
                      +.+++++|.++            .+|..+.  ++|++|+|++|++++..|..|+++++|++|+|++|+|++..+..|..+
T Consensus        15 ~~l~~~~n~l~------------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l   80 (174)
T 2r9u_A           15 TLVNCQNIRLA------------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL   80 (174)
T ss_dssp             SEEECCSSCCS------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cEEEeCCCCCC------------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence            56777777665            6676654  799999999999999989999999999999999999998877778899


Q ss_pred             CCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCC
Q 040699          564 KTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       564 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~  605 (689)
                      ++|+.|++++|.++...+..+..+..++.+++.+|++.|+|+
T Consensus        81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999999999999997777768889999999999999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=3.2e-12  Score=130.47  Aligned_cols=71  Identities=20%  Similarity=0.230  Sum_probs=34.8

Q ss_pred             hhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          510 PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       510 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      ..|.++++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..+..++ |+.|++.+|++.|.+.
T Consensus        50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            3444445555555555555544444555555555555555555544433333333 5555555555554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=2.5e-10  Score=117.98  Aligned_cols=144  Identities=15%  Similarity=0.165  Sum_probs=74.0

Q ss_pred             CCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCC
Q 040699          307 IHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVN  386 (689)
Q Consensus       307 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  386 (689)
                      +..+.+|+.+.+..+ +. .+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++..+|.+|.+
T Consensus       213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~  287 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN  287 (379)
T ss_dssp             TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred             cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence            333444444444332 11 233333333445555555443 33344445555555666555432 33 555555555666


Q ss_pred             CCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCC
Q 040699          387 LESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLT  457 (689)
Q Consensus       387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~  457 (689)
                      |+.+.+.++.+..+...+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.++.
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            666666555555555556666666666666533 44445556666666666666543 4434445565543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=4.8e-13  Score=136.78  Aligned_cols=111  Identities=19%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             CCceEEEccCCcCCccccccccC-----CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccc-----
Q 040699          336 PSLHVFNISMNALDGSIPSSFGN-----MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRN-----  405 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----  405 (689)
                      +.|+.|++++|.++......+..     .++|++|++++|.+.+.....+...+++|++|++++|.+.+.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45666666666655332222221     24666666666666533333333334455566666555543332222     


Q ss_pred             cCCCCccEEeccCCccccc----ccccccCCCCCCEEECCCCCCC
Q 040699          406 FNLANLMSLQLEGNHFIGE----ISQSLSKCSSLEGLFLNNNNLS  446 (689)
Q Consensus       406 ~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~  446 (689)
                      ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            1234444444444444321    1222233444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=5.1e-13  Score=136.62  Aligned_cols=66  Identities=23%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             cCCCCCCCEEeCCCCcCccC----CCccccCCCCCcEEEccceeeeee----cCcccccCCCCCCEEeccCCcce
Q 040699          132 LCSLMHLQELYMADNDLRGS----LPWCLANMTSLRILYVSYNQLTGS----ISSSPLVHLTSIEKLYLSNNHFR  198 (689)
Q Consensus       132 l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~  198 (689)
                      +..+++|++|+|++|.+++.    ++..+...++|++|++++|.+++.    ++. .+...++|++|++++|.++
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCC
Confidence            34455555555555555432    133444455566666666555421    111 2233455666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=2.9e-11  Score=123.35  Aligned_cols=97  Identities=13%  Similarity=0.187  Sum_probs=87.9

Q ss_pred             CCchhhccccccceEeccC-cccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699          507 PIPPKIGNLTRIQTLNLSH-NDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA  585 (689)
Q Consensus       507 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  585 (689)
                      .+|. +..+++|+.|+|++ |.++++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|.+++..+..+.
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            5787 99999999999996 999988889999999999999999999999999999999999999999999977666655


Q ss_pred             cccccCcccccCCcCCCCCC
Q 040699          586 QFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       586 ~~~~~~~~~~~~n~~~c~~~  605 (689)
                      .+. ++.+.+.+|++.|+|.
T Consensus       102 ~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCC-CCEEECCSSCCCCCGG
T ss_pred             cCC-ceEEEeeCCCccCCCc
Confidence            444 8999999999999985

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.18  E-value=1.6e-09  Score=111.93  Aligned_cols=289  Identities=10%  Similarity=0.056  Sum_probs=169.4

Q ss_pred             cCCCCCCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCc
Q 040699          259 YHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSL  338 (689)
Q Consensus       259 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  338 (689)
                      ....+++.+.+... ++ .++...|..+.+|+.+.+.. .++.+...+|.++ +|+.+.+..+ +. .+....+.. .+|
T Consensus        43 ~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L  115 (379)
T 4h09_A           43 KDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDL  115 (379)
T ss_dssp             GGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCC
T ss_pred             ccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCc
Confidence            33444555555322 22 33344456666666666653 3555555566665 4666665543 33 444555543 356


Q ss_pred             eEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc------------cCccccc
Q 040699          339 HVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG------------HMFSRNF  406 (689)
Q Consensus       339 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~  406 (689)
                      +.+.+..+ +......+|.++ +++.+.+..+ ++ .+....|..+.+++.+.+..+....            .....+.
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            66666544 222334455544 4555554432 33 4555555556666666655432211            1112233


Q ss_pred             CCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEE
Q 040699          407 NLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL  486 (689)
Q Consensus       407 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  486 (689)
                      ....+..+.+.... .......+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus       192 ~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i  268 (379)
T 4h09_A          192 AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL  268 (379)
T ss_dssp             TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence            44555555554432 2344556667777888777654 33345567777888888888765 555666677788888888


Q ss_pred             eccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCC
Q 040699          487 DISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL  566 (689)
Q Consensus       487 ~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  566 (689)
                      .+..+--.            .....|.++++|+.+++.++.++.+.+.+|.++.+|+.++|..+ ++.+...+|.++++|
T Consensus       269 ~l~~~i~~------------i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          269 NFYAKVKT------------VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             EECCCCSE------------ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccccccee------------ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            77654221            33456778888888888887777677778888888888888654 655666678888888


Q ss_pred             CEEeccCC
Q 040699          567 EVFSVAYN  574 (689)
Q Consensus       567 ~~L~l~~N  574 (689)
                      +.+.+..+
T Consensus       336 ~~i~ip~~  343 (379)
T 4h09_A          336 STISYPKS  343 (379)
T ss_dssp             CCCCCCTT
T ss_pred             CEEEECCc
Confidence            87776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=6.6e-09  Score=105.08  Aligned_cols=84  Identities=19%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             CCCCCcEEeccccccccccccCCCcccCCCchhh---ccccccceEeccCcccccC----CcccccCCCCCCEEeCcCCc
Q 040699          479 QLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI---GNLTRIQTLNLSHNDLTGS----IPSTFSNLKHVESLDLSNNK  551 (689)
Q Consensus       479 ~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~  551 (689)
                      .+++|++|++++|.+..           ..+..+   ..+++|++|+|+.|.+...    ++..+..+++|+.|++++|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~-----------~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQN-----------VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TCTTCCEEEEESCTTHH-----------HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCcCEEeCCCCCCch-----------HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            35677777777666542           111111   2467788888887777643    22233456788888888887


Q ss_pred             CCCCCchhccC-CCCCCEEeccCCc
Q 040699          552 LNGKIPHQLVE-LKTLEVFSVAYNN  575 (689)
Q Consensus       552 l~~~~~~~~~~-l~~L~~L~l~~N~  575 (689)
                      |+...-..+.. +  ...+++++++
T Consensus       319 i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          319 LSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCHHHHHHHHHHc--CCEEEecCCc
Confidence            76433333332 2  2457777775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=4.7e-09  Score=106.12  Aligned_cols=143  Identities=17%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             ccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCccccc--CCCCCcEEecccc--ccccccccCCC
Q 040699          427 QSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFC--QLDLLQILDISDN--NISGRLDLSCN  502 (689)
Q Consensus       427 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~~~~~l~ls~n  502 (689)
                      ..+..+|+|+.|.+++|.-. .++. + .+++|++|++..|.+.......+.  .+++|++|+|+.+  ...+     +.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~-----~~  237 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF-----DG  237 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC-----CS
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc-----ch
Confidence            44566777777777766311 1222 3 267888888887776543333333  6788888888532  1110     00


Q ss_pred             cccCCCchhh--ccccccceEeccCcccccCCcccc---cCCCCCCEEeCcCCcCCCCC----chhccCCCCCCEEeccC
Q 040699          503 KLIGPIPPKI--GNLTRIQTLNLSHNDLTGSIPSTF---SNLKHVESLDLSNNKLNGKI----PHQLVELKTLEVFSVAY  573 (689)
Q Consensus       503 ~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~  573 (689)
                      .+. .+...+  ..+++|+.|+|++|.+....+..+   ..+++|++|+|+.|.+....    +..+..+++|+.|++++
T Consensus       238 ~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          238 DMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             CGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             hHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            010 111122  357899999999999874333333   25789999999999998643    33344569999999999


Q ss_pred             CcCcC
Q 040699          574 NNLSG  578 (689)
Q Consensus       574 N~l~~  578 (689)
                      |.++.
T Consensus       317 n~i~d  321 (362)
T 2ra8_A          317 NYLSD  321 (362)
T ss_dssp             BBCCH
T ss_pred             CcCCH
Confidence            98763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=1.6e-07  Score=85.55  Aligned_cols=125  Identities=17%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             chhhcCCCCCCEEECCCC-CCCCcchhHHhh---cCCCCcEEECCCCcCCcccC---CCCCCCCCCCCeeeCCCCccccC
Q 040699           24 AQELHSFTNLEYLSLDFS-SLHISLLQSIAS---IFPSLKNLSMSGCEVNGLVR---GQGFPHFKSLEHLDMSSTRIALN   96 (689)
Q Consensus        24 ~~~~~~~~~L~~L~L~~~-~i~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~   96 (689)
                      ...+...+.|++|+|++| .+.......+..   ..++|++|+|++|.+.+.-.   ...+...+.|++|+|++|.++..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            445566677777777776 666554443322   14667777777776653210   01233446677777777776211


Q ss_pred             C--ccchhhhhcCCCccEEEC--CCCCCCCCCCccCccccCCCCCCCEEeCCCCcCc
Q 040699           97 T--SFLQIIGESMPSLKYLSL--SNSTRGTNSSRILDQGLCSLMHLQELYMADNDLR  149 (689)
Q Consensus        97 ~--~~~~~~~~~l~~L~~L~L--s~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~  149 (689)
                      +  .+...+.. .++|++|+|  ++|.++..........+...++|++|+|++|.+.
T Consensus       109 g~~~l~~~L~~-n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQS-NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGG-CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHh-CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            1  12222333 566777777  5564433221111224556677888888877764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=6e-08  Score=85.63  Aligned_cols=82  Identities=13%  Similarity=0.193  Sum_probs=37.0

Q ss_pred             CCEEeCCCCCCCCccccchhhcCCCCCCEEECCCCC-CCCcchhHHhhc---CCCCcEEECCCCc-CCcccCCCCCCCCC
Q 040699            7 LNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSS-LHISLLQSIASI---FPSLKNLSMSGCE-VNGLVRGQGFPHFK   81 (689)
Q Consensus         7 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~~~-i~~~~~~~~~~~---l~~L~~L~Ls~n~-l~~~~~~~~~~~l~   81 (689)
                      |++||++++.|++  .....+..|++|++|+|++|. +++..+..+...   +++|++|+|++|. +++.-. ..+.+++
T Consensus        63 L~~LDLs~~~Itd--~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           63 IQAIDATDSCIMS--IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             EEEEEEESCCCCG--GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             EeEEeCcCCCccH--HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            4555555555444  233344555555555555552 444444444431   1245555555543 332111 1234445


Q ss_pred             CCCeeeCCCC
Q 040699           82 SLEHLDMSST   91 (689)
Q Consensus        82 ~L~~L~L~~~   91 (689)
                      +|++|++++|
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.36  E-value=1.1e-07  Score=86.49  Aligned_cols=43  Identities=19%  Similarity=0.091  Sum_probs=19.4

Q ss_pred             cccCCCCCCEEECCCC-CCCCc----CChhhcCCCCCcEEEcCCCccc
Q 040699          428 SLSKCSSLEGLFLNNN-NLSGK----IPRWLGDLTRLQYIIMPNNHLE  470 (689)
Q Consensus       428 ~~~~l~~L~~L~L~~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~  470 (689)
                      .+...++|++|+|++| .+...    +...+...++|++|+|++|.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3444555555555555 44421    1223333444555555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.17  E-value=1.5e-06  Score=83.07  Aligned_cols=104  Identities=24%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             EeCCCCCCCCccccchh-hcCCCCCCEEECCCCCCCCcc-hhHHhhcCCCCcEEECCCCcCCcccCCCCCCCCCCCCeee
Q 040699           10 LYLLFNNFTDIATTAQE-LHSFTNLEYLSLDFSSLHISL-LQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLD   87 (689)
Q Consensus        10 L~Ls~n~i~~~~~~~~~-~~~~~~L~~L~L~~~~i~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~   87 (689)
                      ++++.|+...+...... ..++++|++|+|++|.++... ++.....+++|++|+|++|.+.+......+..+ +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            66777754432222222 256899999999999998732 333434499999999999999865322234444 899999


Q ss_pred             CCCCccccCCccc------hhhhhcCCCccEEECC
Q 040699           88 MSSTRIALNTSFL------QIIGESMPSLKYLSLS  116 (689)
Q Consensus        88 L~~~~~~~~~~~~------~~~~~~l~~L~~L~Ls  116 (689)
                      +++|.+  .+.++      ..+...+|+|+.||=.
T Consensus       227 L~~Npl--~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          227 LDGNSL--CDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             CTTSTT--GGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             ccCCcC--ccccCcchhHHHHHHHHCcccCeECCc
Confidence            999998  43332      2334459999999743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=4.7e-07  Score=86.48  Aligned_cols=42  Identities=29%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             hhccccccceEeccCcccccCCcccccCCC--CCCEEeCcCCcCCC
Q 040699          511 KIGNLTRIQTLNLSHNDLTGSIPSTFSNLK--HVESLDLSNNKLNG  554 (689)
Q Consensus       511 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~  554 (689)
                      .+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|++.+
T Consensus       191 ~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          191 IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            344455555555555555433  1122222  55555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.01  E-value=3.7e-06  Score=70.99  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=70.0

Q ss_pred             ceEeccCcccc-cCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC-ccccccccCccccc
Q 040699          519 QTLNLSHNDLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WEAQFATFNENSYE  596 (689)
Q Consensus       519 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~  596 (689)
                      ..++.+++.++ ..+|..+.  .+|++|+|++|+|+.+.++.|..+++|+.|+|++|++.|.+.- |+..+..-..... 
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~-   87 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA-   87 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG-
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc-
Confidence            47889999987 34554433  5799999999999988888899999999999999999987652 2222211110000 


Q ss_pred             CCcCCCCCCCCCCCCCCCCCcccCCCCCCCCc
Q 040699          597 GNTFLCGLPLPICRSPATMSEASIGNERDDNL  628 (689)
Q Consensus       597 ~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~  628 (689)
                            ......|.+|...+|..+.++..+++
T Consensus        88 ------~~~~~~C~~P~~l~g~~l~~l~~~~l  113 (130)
T 3rfe_A           88 ------PYRDLRCVAPPALRGRLLPYLAEDEL  113 (130)
T ss_dssp             ------GGTTCBCCBSTTTTTCBGGGCCHHHH
T ss_pred             ------cccCcEeCcChHHcCCCcccCCHHHh
Confidence                  01123788898888887776665443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=3.4e-06  Score=74.42  Aligned_cols=84  Identities=8%  Similarity=0.071  Sum_probs=45.7

Q ss_pred             CceEEEccCCcCCccccccccCCCCCcEEeccCCc-ccccchhhhhcC---CCCCCEEEccCCc-CCccCcccccCCCCc
Q 040699          337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQ-LTGEIPEHLAVG---CVNLESLVLSNNS-LKGHMFSRNFNLANL  411 (689)
Q Consensus       337 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~---l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  411 (689)
                      .|+.|++++|.++...-..+.++++|++|+|++|. +++..-..+...   +++|++|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56666666666655444455666666677666663 543333333321   2356666666653 555444444455555


Q ss_pred             cEEeccCCc
Q 040699          412 MSLQLEGNH  420 (689)
Q Consensus       412 ~~L~L~~n~  420 (689)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.49  E-value=0.00015  Score=60.99  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=41.9

Q ss_pred             cccCCCccc-CCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCC
Q 040699          497 LDLSCNKLI-GPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNG  554 (689)
Q Consensus       497 l~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  554 (689)
                      ++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.-
T Consensus        13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            344444443 24554433  479999999999998888889999999999999998863

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=0.00015  Score=65.19  Aligned_cols=122  Identities=11%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             hhhcCCCCCCEEECCCC-CCCCcchhHHhhc---CCCCcEEECCCCcCCcccCC---CCCCCCCCCCeeeCCCCccccCC
Q 040699           25 QELHSFTNLEYLSLDFS-SLHISLLQSIASI---FPSLKNLSMSGCEVNGLVRG---QGFPHFKSLEHLDMSSTRIALNT   97 (689)
Q Consensus        25 ~~~~~~~~L~~L~L~~~-~i~~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~   97 (689)
                      ..+.+-+.|++|+|+++ .|.+.....++..   -+.|+.|+|++|.+.+....   ..+..-+.|++|+|++|.|+..+
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34455566777777664 6665544433322   34677777777766532111   02223466777777777763211


Q ss_pred             c--cchhhhhcCCCccEEECCCC---CCCCCCC-ccCccccCCCCCCCEEeCCCCcC
Q 040699           98 S--FLQIIGESMPSLKYLSLSNS---TRGTNSS-RILDQGLCSLMHLQELYMADNDL  148 (689)
Q Consensus        98 ~--~~~~~~~~l~~L~~L~Ls~~---~~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l  148 (689)
                      .  +.+.+.. .+.|+.|+|+++   .++.... .+. ..+..-+.|+.|+++.+.+
T Consensus       115 a~ala~aL~~-N~tL~~L~L~n~~~~~ig~~g~~~ia-~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMM-MAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTT-TCCCSEEECCCCSSCCCCHHHHHHHH-HHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhh-CCceeEEECCCCcCcCcCHHHHHHHH-HHHHhCCCcCeEeccCCCc
Confidence            1  1122222 345777777654   2232111 122 2455556777777776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=0.00014  Score=65.45  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=64.2

Q ss_pred             CCCCcEEECCCC-cCCccc---CCCCCCCCCCCCeeeCCCCccccCC--ccchhhhhcCCCccEEECCCCCCCCCCCccC
Q 040699           55 FPSLKNLSMSGC-EVNGLV---RGQGFPHFKSLEHLDMSSTRIALNT--SFLQIIGESMPSLKYLSLSNSTRGTNSSRIL  128 (689)
Q Consensus        55 l~~L~~L~Ls~n-~l~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~  128 (689)
                      -+.|++|+|+++ .+...-   -...+..-+.|+.|+|++|.+++.+  .+.+.+.. .+.|+.|+|+.|.++..+....
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHHH
Confidence            467777777764 554210   0113445567777777777773221  12223333 5677777777775554332222


Q ss_pred             ccccCCCCCCCEEeCCCCcC---cc----CCCccccCCCCCcEEEccceee
Q 040699          129 DQGLCSLMHLQELYMADNDL---RG----SLPWCLANMTSLRILYVSYNQL  172 (689)
Q Consensus       129 ~~~l~~l~~L~~L~L~~n~l---~~----~~~~~~~~l~~L~~L~L~~n~l  172 (689)
                      ...+..-+.|++|+|+++..   ..    .+...+..-+.|+.|+++.|.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            23555566677777765432   21    1223455556777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	689
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.0 bits (214), Expect = 3e-19
 Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 24/268 (8%)

Query: 304 RLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLR 363
           ++P        +LD+ NN        +  + L +LH   +  N +    P +F  +  L 
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 364 ILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIG 423
            L LS NQL  E+PE +      L         ++  +F+   N   ++ L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSG 140

Query: 424 EISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLL 483
             + +      L  + + + N++  IP+ L     L  + +  N +          L+ L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 484 QILDISDNNISGRLDLSC------------NKLIGPIPPKIGNLTRIQTLNLSHNDLTGS 531
             L +S N+IS   + S             N  +  +P  + +   IQ + L +N+++  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 532 IPSTF------SNLKHVESLDLSNNKLN 553
             + F      +       + L +N + 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 43/233 (18%), Positives = 70/233 (30%), Gaps = 18/233 (7%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410
            +P          +LDL NN++T            NL +L+L NN +          L  
Sbjct: 24  KVPKDLPPD--TALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470
           L  L L  N       +       L         +   +   L  +  +  +        
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSS 139

Query: 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG 530
           G     F  +  L  + I+D NI+             IP   G    +  L+L  N +T 
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT------------TIPQ--GLPPSLTELHLDGNKITK 185

Query: 531 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
              ++   L ++  L LS N ++      L     L    +  N L       
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421
           LR++  S+  L  ++P+ L     +   L L NN +         NL NL +L L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLD 481
                 + +    LE L+L+ N L     +    L  L+   +  N +       F  L+
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLN 124

Query: 482 LLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKH 541
            + +++         L  +  K  G        + ++  + ++  ++T        +L  
Sbjct: 125 QMIVVE---------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE 175

Query: 542 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
              L L  NK+       L  L  L    +++N++S      
Sbjct: 176 ---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 46/298 (15%), Positives = 90/298 (30%), Gaps = 50/298 (16%)

Query: 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV 167
           P    L L N       + I D    +L +L  L + +N +    P   A +  L  LY+
Sbjct: 31  PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 168 SYNQLTGSISSSPLVHLTSIEKLYLSNNHFR--IPISLEPLFNHSRLKIFYADNNELNAE 225
           S NQL       P     ++++L +  N            L     +++          E
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 226 ITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLEN 285
                 +                               L Y  ++   +    P  L  +
Sbjct: 143 NGAFQGMK-----------------------------KLSYIRIADTNIT-TIPQGLPPS 172

Query: 286 NTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISM 345
              L +L L  + +       +     L  L +S N+             P L   +++ 
Sbjct: 173 ---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNN 228

Query: 346 NALDGSIPSSFGNMNFLRILDLSNNQLTG-----EIPEHLAVGCVNLESLVLSNNSLK 398
           N L   +P    +  +++++ L NN ++        P        +   + L +N ++
Sbjct: 229 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 43/267 (16%), Positives = 86/267 (32%), Gaps = 16/267 (5%)

Query: 5   PSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMS 64
           P    L L  N  T+I     +  +  NL  L L  + +      + A     L+ L +S
Sbjct: 31  PDTALLDLQNNKITEI--KDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLS 87

Query: 65  GCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNS 124
             ++  L         + L   +   T++                 + + +   T    S
Sbjct: 88  KNQLKELPEKM-PKTLQELRVHENEITKV--------RKSVFNGLNQMIVVELGTNPLKS 138

Query: 125 SRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHL 184
           S I +     +  L  + +AD ++            SL  L++  N++T   ++S L  L
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAAS-LKGL 194

Query: 185 TSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSL 244
            ++ KL LS N      +          ++   +N  +      +         L   ++
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 245 SSSYGDGFIFPKFLYHQHDLEYADLSH 271
           S+   + F  P +   +       L  
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 3e-19
 Identities = 79/405 (19%), Positives = 133/405 (32%), Gaps = 51/405 (12%)

Query: 157 ANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFY 216
             +       +    +T ++S +    L  +  L       +   S++ +   + L    
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 72

Query: 217 ADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNG 276
             NN+L            P   L++L       +       L +  +L    L + ++  
Sbjct: 73  FSNNQLTDIT--------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 277 EFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILP 336
             P   L N  +L                 I     L  L        G+   ++  +  
Sbjct: 125 IDPLKNLTNLNRLEL-----------SSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS 396
              +  + +++   S  S    +  L  L  +NNQ++   P  +     NL+ L L+ N 
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 230

Query: 397 LKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDL 456
           LK        +L NL  L L  N         LS  + L  L L  N +S   P     L
Sbjct: 231 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GL 284

Query: 457 TRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG-----------RLDLSCNKLI 505
           T L  + +  N            L  L  L +  NNIS            RL  + NK+ 
Sbjct: 285 TALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 342

Query: 506 GPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550
                 + NLT I  L+  HN ++   P   +NL  +  L L++ 
Sbjct: 343 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 47/191 (24%), Positives = 69/191 (36%), Gaps = 19/191 (9%)

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL 459
              S    L NL SL    N         +   ++L+ L LN N L       L  LT L
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNL 243

Query: 460 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDL---------SCNKLIGPIPP 510
             + + NN +    P     L  L  L +  N IS    L           N+       
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 511 KIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 570
            I NL  +  L L  N+++   P   S+L  ++ L  +NNK++      L  L  +   S
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 571 VAYNNLSGEIP 581
             +N +S   P
Sbjct: 358 AGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 7e-12
 Identities = 56/351 (15%), Positives = 120/351 (34%), Gaps = 32/351 (9%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHI----SLLQSIASIFP 56
           +    +L  +    N  TDI      L + T L  + ++ + +      + L ++  +  
Sbjct: 62  VEYLNNLTQINFSNNQLTDI----TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 57  SLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLS 116
               ++      N     +      ++  +   S   +L           +  L  L+  
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 117 NSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSI 176
                +++       L  L +L+ L   +N +    P     +T+L  L ++ NQL    
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD-- 233

Query: 177 SSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 236
               L  LT++  L L+NN      +L PL   ++L       N+++           P 
Sbjct: 234 -IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNIS--------PL 281

Query: 237 FQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVN 296
             L+ L+      +       + +  +L Y  L    ++   P   + + TKL++L   N
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFAN 338

Query: 297 DSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNA 347
           + ++      + +   +  L   +N      PL     L  +    ++  A
Sbjct: 339 NKVSDVS--SLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 1e-11
 Identities = 66/388 (17%), Positives = 122/388 (31%), Gaps = 33/388 (8%)

Query: 10  LYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVN 69
             L   N TD  +   +L   T     +L    L I  +  +     +L  ++ S  ++ 
Sbjct: 27  TVLGKTNVTDTVSQT-DLDQVT-----TLQADRLGIKSIDGVEY-LNNLTQINFSNNQLT 79

Query: 70  GLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILD 129
            +   +       +   +     I    +   + G ++ + +   +      TN +R+  
Sbjct: 80  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 130 QG--LCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSI 187
               +  +  L  L        G+    L  + +L  L             S L  LT++
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 188 EKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSS 247
           E L  +NN       + PL   + L     + N+L    T +      +  L+   +S+ 
Sbjct: 200 ESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN- 255

Query: 248 YGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPI 307
                     L     L    L   +++   P   L   T L                PI
Sbjct: 256 -------LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-----EDISPI 303

Query: 308 HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDL 367
            + K L  L +  NN     P+     L  L     + N +  S  SS  N+  +  L  
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKV--SDVSSLANLTNINWLSA 358

Query: 368 SNNQLTGEIPEHLAVGCVNLESLVLSNN 395
            +NQ++   P         +  L L++ 
Sbjct: 359 GHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 5e-07
 Identities = 50/273 (18%), Positives = 93/273 (34%), Gaps = 22/273 (8%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
             +   N    +     D + +L    + + ++DG        +N L  ++ SNNQLT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL 435
            P        NL  LV    +               ++     N+ I +I    +  +  
Sbjct: 82  TP------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH-----LEGPIPVEFCQLDLLQILDISD 490
                +N          L  L +L +     +      L     ++     +  I  ++ 
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNN 550
                 L  + N++    P  I   T +  L+L+ N L      T ++L ++  LDL+NN
Sbjct: 196 LTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 551 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 583
           +++   P  L  L  L    +  N +S   P  
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLA 282

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.6 bits (205), Expect = 4e-18
 Identities = 67/313 (21%), Positives = 114/313 (36%), Gaps = 60/313 (19%)

Query: 309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLS 368
              R+  LD+S  N     P                       IPSS  N+ +L  L + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIG 84

Query: 369 NNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQS 428
                             L  L +++ ++ G +      +  L++L    N   G +  S
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 429 LSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQY-IIMPNNHLEGPIPVEFCQLDLLQIL- 486
           +S   +L G+  + N +SG IP   G  ++L   + +  N L G IP  F  L+L  +  
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 487 ----------DISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF 536
                      +  ++ + +        +     K+G    +  L+L +N + G++P   
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 537 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYE 596
           + LK + SL++S N L                         GEIP+       F+ ++Y 
Sbjct: 265 TQLKFLHSLNVSFNNL------------------------CGEIPQG-GNLQRFDVSAYA 299

Query: 597 GNTFLCGLPLPIC 609
            N  LCG PLP C
Sbjct: 300 NNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 4e-11
 Identities = 40/264 (15%), Positives = 80/264 (30%), Gaps = 14/264 (5%)

Query: 137 HLQELYMADNDLRG--SLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSN 194
            +  L ++  +L     +P  LAN+  L  LY+             +  LT +  LY+++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 195 NHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP-NFQLSRLSLSSSYGDGFI 253
            +    I        + + + ++ N           SL            +S +  D + 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRL 313
               L+    +    L+           L   +                    +      
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM---------LEGDASVLFGSDK 221

Query: 314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLT 373
               I          L    +  +L+  ++  N + G++P     + FL  L++S N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 374 GEIPEHLAVGCVNLESLVLSNNSL 397
           GEIP+         +    +NN  
Sbjct: 282 GEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 3/168 (1%)

Query: 513 GNLTRIQTLNLSHNDLTG--SIPSTFSNLKHVESLDLSNN-KLNGKIPHQLVELKTLEVF 569
               R+  L+LS  +L     IPS+ +NL ++  L +     L G IP  + +L  L   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 570 SVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLI 629
            + + N+SG IP++ +Q  T     +  N     LP  I   P  +     GN     + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 630 DTNSFFITFTTSYVIVIFGIVIVLYVNSYWRRRWFYFVEMWITSCYYF 677
           D+   F    TS  I    +   +          F  +   +      
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 6e-16
 Identities = 52/263 (19%), Positives = 86/263 (32%), Gaps = 18/263 (6%)

Query: 305 LPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRI 364
           +P+        + +  N               +L +  +  N L     ++F  +  L  
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 365 LDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGE 424
           LDLS+N     +      G   L +L L    L+         LA L  L L+ N     
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 425 ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 484
              +     +L  LFL+ N +S    R    L  L  +++  N +    P  F  L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 485 ILDISDNNISG-------------RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGS 531
            L +  NN+S               L L+ N  +            +Q    S +++  S
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCS 263

Query: 532 IPSTFSNLKHVESLDLSNNKLNG 554
           +P   +         L+ N L G
Sbjct: 264 LPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 44/212 (20%), Positives = 70/212 (33%), Gaps = 14/212 (6%)

Query: 409 ANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH 468
           A    + L GN      + S   C +L  L+L++N L+         L  L+ + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 469 LEGPI-PVEFCQLDLLQILDISDNNISG-------------RLDLSCNKLIGPIPPKIGN 514
               + P  F  L  L  L +    +                L L  N L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 574
           L  +  L L  N ++      F  L  ++ L L  N++    PH   +L  L    +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 575 NLSGEIPEWEAQFATFNENSYEGNTFLCGLPL 606
           NLS    E  A            N ++C    
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 36/288 (12%)

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
            + + +++  N+++   ++S      ++  L+L +N      +          ++  +DN
Sbjct: 32  AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
            +L                              + P   +    L    L    +    P
Sbjct: 91  AQL----------------------------RSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
                    L+ L L +++L             L  L +  N     +P      L SL 
Sbjct: 123 GL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD 180

Query: 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG 399
              +  N +    P +F ++  L  L L  N L+  +P         L+ L L++N    
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

Query: 400 HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG 447
              +R    A L   +   +     + Q L+         L  N+L G
Sbjct: 240 DCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 38/262 (14%), Positives = 76/262 (29%), Gaps = 35/262 (13%)

Query: 137 HLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQ------------------------L 172
             Q +++  N +            +L IL++  N                          
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 173 TGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSL 232
             S+  +    L  +  L+L     +  +        + L+  Y  +N L A    +   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR- 150

Query: 233 TAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQL 292
                 L+ L L  +         F    H L+   L   ++    P    +    +   
Sbjct: 151 --DLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 293 SLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSI 352
              N+  A P    +   + L  L +++N +          +   L  F  S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQKFRGSSSEVPCSL 264

Query: 353 PSSFGNMNFLRILDLSNNQLTG 374
           P      +   +  L+ N L G
Sbjct: 265 PQRLAGRD---LKRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 6/254 (2%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           LD++  N    +   +  +   +  F    + +D  +   F     ++ +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL 435
               +   C  L++L L    L   + +     +NL+ L L G     E +      S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495
               LN +       + +          +   +L G             +    +     
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL- 180

Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSH-NDLTGSIPSTFSNLKHVESLDLSNNKLNG 554
                   L      +   L  +Q L+LS   D+          +  +++L +     +G
Sbjct: 181 -DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 555 KIPHQLVELKTLEV 568
            +      L  L++
Sbjct: 240 TLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 37/266 (13%), Positives = 77/266 (28%), Gaps = 22/266 (8%)

Query: 268 DLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHI 327
           DL+   ++ +    LL       +                 S  R+  +D+SN+      
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVST 62

Query: 328 PLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDL-SNNQLTGEIPEHLAVGCVN 386
              I      L   ++    L   I ++    + L  L+L   +  +    + L   C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 387 LESLVLSNNSLKGHMFSRN-------FNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLF 439
           L+ L LS          +              +S   +        +      + +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 440 LNNNNLSGKIPRWLGDLTRLQYIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISG--- 495
            ++  L     +    L  LQ++ +     +     +E  ++  L+ L +      G   
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 496 -------RLDLSCNKLIGPIPPKIGN 514
                   L ++C+       P IGN
Sbjct: 243 LLKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 12/122 (9%)

Query: 482 LLQILDISDNNIS----------GRLDLSCNKL-IGPIPPKIGNLTRIQTLNLSHNDLTG 530
           L Q LD++  N+           G +   C +  +     +  +  R+Q ++LS++ +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 531 -SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFAT 589
            ++    S    +++L L   +L+  I + L +   L   +++  +   E        + 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 590 FN 591
             
Sbjct: 121 SR 122

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 39/258 (15%), Positives = 77/258 (29%), Gaps = 13/258 (5%)

Query: 37  SLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALN 96
           +LD +  ++    +   +   +         ++  +     P    ++H+D+S++ I   
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF--RVQHMDLSNSVI--E 59

Query: 97  TSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCL 156
            S L  I      L+ LSL         S  +   L    +L  L ++            
Sbjct: 60  VSTLHGILSQCSKLQNLSLEG----LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 157 ANMTSLRILYVSYNQLTGSISSSPLVHL----TSIEKLYLSNNHFRIPISLEPLFNHSRL 212
              +  R+  ++ +           V +     +I +L LS     +  S          
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 213 KIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHI 272
            + + D ++                 L  LSLS  Y         L     L+   +  I
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 273 KMNGEFPTWLLENNTKLR 290
             +G     L E    L+
Sbjct: 236 VPDGTLQ-LLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 5/215 (2%)

Query: 1   MGSFPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKN 60
            G   S   +       + +     E  S   ++++ L  S + +S L  I S    L+N
Sbjct: 17  TGRLLSQGVIAFRCPR-SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 75

Query: 61  LSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTR 120
           LS+ G  ++  +         +L  L++S      +   LQ +  S   L  L+LS    
Sbjct: 76  LSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSG-FSEFALQTLLSSCSRLDELNLSWCFD 133

Query: 121 GT--NSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
            T  +    +     ++  L       N  +  L   +    +L  L +S + +  +   
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 179 SPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLK 213
                L  ++ L LS  +  IP +L  L     LK
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 10/231 (4%)

Query: 238 QLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVND 297
            +       S+ D  +   F   +  +++ DLS+  +       +L   +KL+ LSL   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 298 SLAGPFRLPIHSHKRLGMLDI-SNNNFRGHIPLEIGDILPSLHVFNI------SMNALDG 350
            L+ P    +  +  L  L++   + F       +      L   N+      +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410
           ++      +  L +     N    ++   +      +   +  +  LK   F   F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 411 LMSLQLEGNHFI-GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQ 460
           L  L L   + I  E    L +  +L+ L +      G +      L  LQ
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 40/203 (19%), Positives = 63/203 (31%), Gaps = 18/203 (8%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410
           ++P          IL LS N L       L      L  L L     +      +  L  
Sbjct: 24  ALPPDLPKD--TTILHLSENLLYTFSLATLM-PYTRLTQLNLDRA--ELTKLQVDGTLPV 78

Query: 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470
           L +L L  N          +  +      ++ N L+      L  L  LQ + +  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG 530
              P        L+ L +++NN++                 +  L  + TL L  N L  
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTE-----------LPAGLLNGLENLDTLLLQENSLY- 185

Query: 531 SIPSTFSNLKHVESLDLSNNKLN 553
           +IP  F     +    L  N   
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 20/213 (9%)

Query: 316 LDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGE 375
           ++    N    +P ++        + ++S N L     ++      L  L+L   +LT  
Sbjct: 15  VNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 376 IPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL 435
             +      + +   +  +++    +      L  L  L +  N        +L     L
Sbjct: 71  QVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 436 EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 495
           + L+L  N L    P  L    +L+ + + NN+L          L+ L  L + +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185

Query: 496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDL 528
                       IP        +    L  N  
Sbjct: 186 -----------TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 9e-07
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 19/222 (8%)

Query: 355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSL 414
               +     ++     LT  +P  L     +   L LS N L     +       L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 415 QLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP 474
            L+                +L  L   + + +      L   T     ++  +       
Sbjct: 61  NLDRAELTKLQ-----VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF------ 109

Query: 475 VEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS 534
               +L  L +  +        L L  N+L    P  +    +++ L+L++N+LT     
Sbjct: 110 ---NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166

Query: 535 TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 576
             + L+++++L L  N L   IP        L    +  N  
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 36/235 (15%), Positives = 61/235 (25%), Gaps = 39/235 (16%)

Query: 138 LQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
             E+     +L  +LP  L       IL++S N L    S + L+  T + +L L     
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAEL 67

Query: 198 RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF 257
                   L     L + +     L                                   
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----------------------ALTVL 105

Query: 258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLD 317
               + L    L  ++  GE     L+ N                    + +        
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK------------TLPPGLLTPTPKLEKL 153

Query: 318 ISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQL 372
              NN    +P  + + L +L    +  N+   +IP  F   + L    L  N  
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 31/206 (15%), Positives = 51/206 (24%), Gaps = 18/206 (8%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHISLLQSIASIFPSLKNLSM 63
                 L+L  N       +   L  +T L  L+LD + L          +  +L  L  
Sbjct: 30  PKDTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKL------QVDGTLPVLGT 81

Query: 64  SGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTN 123
                N L              +   S     +     + G       Y          N
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY-------LKGN 134

Query: 124 SSRILDQGLCSLMHLQELYMAD-NDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLV 182
             + L  GL +     E      N+L       L  + +L  L +  N L          
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFF 192

Query: 183 HLTSIEKLYLSNNHFRIPISLEPLFN 208
               +   +L  N +     +     
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRR 218

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 3e-09
 Identities = 49/469 (10%), Positives = 112/469 (23%), Gaps = 34/469 (7%)

Query: 109 SLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRG----SLPWCLANMTSLRI 164
            ++ L +        S     + L  L   Q + + D  L       +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 165 LYVSYNQLTG----SISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
           L +  N+L       +          I+KL L N                 L      + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 221 ELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPT 280
             N        L        +           +    L +      +      +    P 
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQ---------CRLEKLQLEYCSLSAASCEPLASVLRAKPD 170

Query: 281 WLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHV 340
           +     +           L    +      + L +      +        I     SL  
Sbjct: 171 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGH 400
             +  N L     +            L    +          G +        +      
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 290

Query: 401 MFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQ 460
             +   +    +  +          S  +  CS        ++  S           ++ 
Sbjct: 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA--ACCSHFSSVLAQNRFLLELQIS 348

Query: 461 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQT 520
              + +  +            +L++L ++D ++S       +     +   +     ++ 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS-------DSSCSSLAATLLANHSLRE 401

Query: 521 LNLSHNDLTGSIPSTFS-----NLKHVESLDLSNNKLNGKIPHQLVELK 564
           L+LS+N L  +               +E L L +   + ++  +L  L+
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 9e-08
 Identities = 59/443 (13%), Positives = 119/443 (26%), Gaps = 20/443 (4%)

Query: 161 SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFR---IPISLEPLFNHSRLKIFYA 217
            ++ L +   +L+ +  +  L  L   + + L +              L  +  L     
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 218 DNNELNAEITQS--HSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYA---DLSHI 272
            +NEL           L  P+ ++ +LSL +    G            L       LS  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 273 KMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIG 332
            +       L E     +                        +    +         +I 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL 392
           +    +    +  +                         +  +          N    V 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRW 452
                 G +   +      +          G++ + L    SL+ L L  N L  +  R 
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 453 LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI 512
           L +        + +  ++       C      +L  +   +  ++  +  +  G      
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 513 G---NLTRIQTLNLSHNDLTG----SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE--- 562
           G     + ++ L L+  D++     S+ +T      +  LDLSNN L      QLVE   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 563 --LKTLEVFSVAYNNLSGEIPEW 583
                LE   +     S E+ + 
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 9e-07
 Identities = 53/447 (11%), Positives = 117/447 (26%), Gaps = 22/447 (4%)

Query: 32  NLEYLSLDFSSLHISLLQSIASIFPSLKNLSMSGCEVNGL---VRGQGFPHFKSLEHLDM 88
           +++ L +    L  +    +  +    + + +  C +                +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 89  SSTRI--ALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADN 146
            S  +        LQ +      ++ LSL N         +L   L +L  LQEL+++DN
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 147 DLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPL 206
            L  +    L          +   QL     S+      +       +       + +  
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 207 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEY 266
               R+      ++    E  +  S    +     L    +            ++     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 267 ADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGH 326
                  +             +    +     L    R      +     +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 327 IPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTG--------EIPE 378
           +   + +    L    +   +   +  S F ++       L               E+ +
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 379 HLAVGCVNLESLVLSNNSLKG----HMFSRNFNLANLMSLQLEGNHFIGEISQSLSK--- 431
            L      L  L L++  +       + +      +L  L L  N         L +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 432 --CSSLEGLFLNNNNLSGKIPRWLGDL 456
                LE L L +   S ++   L  L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 53/415 (12%), Positives = 101/415 (24%), Gaps = 19/415 (4%)

Query: 2   GSFPSLNTLYLLFNNFTDIATT--AQELHSFTNLEYLSLDFSSLH----ISLLQSIASIF 55
                   + L     T+      +  L     L  L+L  + L       +LQ + +  
Sbjct: 24  PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 83

Query: 56  PSLKNLSMSGCEVNGLVRGQGFPHFKSLEHL---DMSSTRIALNTSFLQIIGESMPSLKY 112
             ++ LS+  C + G   G      ++L  L    +S   +      L   G   P  + 
Sbjct: 84  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 143

Query: 113 LSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQL 172
             L       +++                 +  ++   +          L+        L
Sbjct: 144 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 203

Query: 173 TGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSHSL 232
                     +   +  +  S    R             +          ++ +      
Sbjct: 204 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 263

Query: 233 TAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQL 292
                      L           +     ++L       +      P   LE+       
Sbjct: 264 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 323

Query: 293 SLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILP--SLHVFNISMNALDG 350
                       L  +       +  +     G   L  G   P   L V  ++   +  
Sbjct: 324 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 383

Query: 351 ----SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVG----CVNLESLVLSNNSL 397
               S+ ++    + LR LDLSNN L       L          LE LVL +   
Sbjct: 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 34/230 (14%), Positives = 77/230 (33%), Gaps = 17/230 (7%)

Query: 328 PLEIGDILP-----SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAV 382
           P  I  I P     +        + +  ++  +  +++ +  L      +T    E +  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQ- 60

Query: 383 GCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNN 442
              NL  L L +N +      +N      + L       +  I+   S  +         
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 443 NNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDL--- 499
           +         L  L      I   + L G   +++  +   Q+ D++      +L     
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 500 SCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN 549
             NK+    P  + +L  +  ++L +N ++   P   +N  ++  + L+N
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 27/238 (11%)

Query: 157 ANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFY 216
             + +   +    + +T +++ +    L  I  L           ++E +   + L    
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 217 ADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNG 276
             +N++       +           L+  +         K +     L+      +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 277 EFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILP 336
                 L   + L+ L L  + +     L   ++ +   +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 337 SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN 394
            L       N +    P    ++  L  + L NNQ++   P        NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 12/217 (5%)

Query: 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE 417
            +     +    + +T  + +        + +L      +          L NL+ L+L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEF 477
            N              +   L  N       I       T         +          
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 478 CQLDLLQILDISDNNISGRLDL---SCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS 534
             L L      + + ++G  +L   S           + NL+++ TL    N ++   P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 535 TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 571
             ++L ++  + L NN+++   P  L     L + ++
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 14/196 (7%)

Query: 4   FPSLNTLYLLFNNFTDIATTAQELHSFTNLEYLSLDFSSLHI-----SLLQSIASIFPSL 58
              + TL       T I    + +    NL  L L  + +       +L +         
Sbjct: 40  LDGITTLSAFGTGVTTI----EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 59  KNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNS 118
              ++S       ++       +  +   ++                ++  L  L+    
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 119 TRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISS 178
               N+       L +L  L  L   DN +    P  LA++ +L  +++  NQ++     
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-- 211

Query: 179 SPLVHLTSIEKLYLSN 194
            PL + +++  + L+N
Sbjct: 212 -PLANTSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 33/228 (14%)

Query: 327 IPLEIGDILP-----SLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLA 381
           +P  I  I            N+   ++  ++  +   +N +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 382 VGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN 441
               N+  L L+ N L       N      + L       +  +              L+
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK------SLS 118

Query: 442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSC 501
             +        L  L +L+ + + NN +     +                          
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS--------------LE 164

Query: 502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN 549
           +  I  I P +  LT++Q L LS N ++       + LK+++ L+L +
Sbjct: 165 DNQISDIVP-LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 7e-07
 Identities = 56/322 (17%), Positives = 91/322 (28%), Gaps = 24/322 (7%)

Query: 81  KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQE 140
           +    L++++         L  + E  P L+ L  S      NS   L +   SL  L  
Sbjct: 38  RQAHELELNNLG-------LSSLPELPPHLESLVASC-----NSLTELPELPQSLKSLLV 85

Query: 141 LY---MADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
                 A +DL   L +   +   L  L    N     I       L  +  L  S    
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 198 RIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKF 257
               +        +   F       N  + +   L      +   +             F
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 258 LYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLD 317
           L   +       +   +        + +N       L            I S       +
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 318 ISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIP 377
           +   N   +    + D+ PSL   N+S N L   +P+       L  L  S N L  E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320

Query: 378 EHLAVGCVNLESLVLSNNSLKG 399
           E       NL+ L +  N L+ 
Sbjct: 321 ELPQ----NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 20/109 (18%)

Query: 460 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQ 519
              +   N     I         L+ L++S+N +              +P     L R  
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE------------LPALPPRLER-- 308

Query: 520 TLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 568
            L  S N L   +P    NLK    L +  N L  + P     ++ L +
Sbjct: 309 -LIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 54/315 (17%), Positives = 94/315 (29%), Gaps = 23/315 (7%)

Query: 134 SLMHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLS 193
              HL+ L  + N L   LP       SL+ L V  N L       PL+    +    L 
Sbjct: 56  LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 111

Query: 194 NNHFRIPISLEPLFNHSRLKIFYADNNELNAEITQSH------SLTAPNFQLSRLSLSSS 247
                   S   + +     +    +   + E   +            N        + +
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 171

Query: 248 YGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPI 307
                +    L  +  +   ++       +   +L         L  + D       L +
Sbjct: 172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 231

Query: 308 HSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDL 367
             +    + ++  +     +   I   L  L      +NA    I S       L  L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 368 SNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQ 427
           SNN+L  E+P         LE L+ S N L            NL  L +E N     + +
Sbjct: 292 SNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNP----LRE 338

Query: 428 SLSKCSSLEGLFLNN 442
                 S+E L +N+
Sbjct: 339 FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 8e-05
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 499 LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH 558
              N     I         ++ LN+S+N L   +P+    L+    L  S N L  ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPE 321

Query: 559 QLVELKTLEVFSVAYNNLSGEIPEW 583
               LK L    V YN L  E P+ 
Sbjct: 322 LPQNLKQL---HVEYNPLR-EFPDI 342

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 17/185 (9%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410
            IP           L L++N+L     + L     +L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470
           +  LQL  N      ++       L+ L L +N +S  +P     L  L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 471 GPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTG 530
               + +                  +  L+        P K+ ++   Q  +L H++   
Sbjct: 140 CNCHLAWF------------AEWLRKKSLNGGAARCGAPSKVRDV---QIKDLPHSEFKC 184

Query: 531 SIPST 535
           S  ++
Sbjct: 185 SSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 20/192 (10%)

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNF-NLANLMSLQLEGNHF 421
             +D +   L  EIP  + +   +   L+L++N L        F  L +L+ L+L+ N  
Sbjct: 11  TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLD 481
            G    +    S ++ L L  N +     +    L +L+ + + +N +   +P  F  L+
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 482 LLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKH 541
            L  L+++ N  +                       ++  +L+        PS    ++ 
Sbjct: 127 SLTSLNLASNPFNC------------NCHLAWFAEWLRKKSLNGGAARCGAPS---KVRD 171

Query: 542 VESLDLSNNKLN 553
           V+  DL +++  
Sbjct: 172 VQIKDLPHSEFK 183

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 354 SSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMS 413
           + + N    R LDL   ++   + E+L       +++  S+N +          L  L +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSG----KIPRWLGDLTRLQYIIMPNNHL 469
           L +  N               L  L L NN+L           L  LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 470 EGPIPVEFCQLDLLQILD 487
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 510 PKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 569
            +  N  R + L+L    +   I +  + L   +++D S+N++          L+ L+  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 570 SVAYNNLSGEIPEW 583
            V  N +       
Sbjct: 69  LVNNNRICRIGEGL 82

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 27/212 (12%), Positives = 60/212 (28%), Gaps = 4/212 (1%)

Query: 160 TSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADN 219
            +   L     +L   I          +EK+ +S N     I  +   N  +L     + 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 220 NELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFP 279
                 I            L  L +S++          ++    +      +I ++    
Sbjct: 88  ANNLLYINPEA--FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 280 TWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLH 339
              +  + +   L L  + +        +  +   +    NNN    +P ++        
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPV 204

Query: 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQ 371
           + +IS   +         N+  LR     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 8/219 (3%)

Query: 333 DILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVL 392
           D+  +       +  L      +F     L  +++S N +   I   +      L  + +
Sbjct: 26  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85

Query: 393 SNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRW 452
              +   ++    F     +   L  N  I  +       S  + L    +N++      
Sbjct: 86  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 453 LGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI 512
              +      ++   +  G   +  C  +  Q+ +++ ++ +   +L  +          
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVF-------- 197

Query: 513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNK 551
              +    L++S   +         NLK + +    N K
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 8/236 (3%)

Query: 161 SLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIPISLEPLFNHSRLKIFYADNN 220
           S R+     +++T      P     +  +L       R    ++         +   + +
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEIS 61

Query: 221 ELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLYHQHDLEYADLSHIKMNGEFPT 280
           + +        + +   +L  + +  +    +I P+   +  +L+Y  +S+  +      
Sbjct: 62  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 121

Query: 281 WLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHV 340
             + +  K+      N ++    R          ++   N N    I     +      +
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181

Query: 341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNS 396
                N L+      F   +   ILD+S  ++   +P +       L +    N  
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 41/233 (17%), Positives = 70/233 (30%), Gaps = 25/233 (10%)

Query: 363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG---HMFSRNFNLANLMSLQLEGN 419
           R+     +++T EIP  L     N   L      L+      FS  F     + +     
Sbjct: 11  RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFS-GFGDLEKIEISQNDV 65

Query: 420 HFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEF-- 477
             + E     +     E      NNL    P    +L  LQY+++ N  ++    V    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 478 -------------CQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLS 524
                            + +   +  +  S  L L+ N +              +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 525 HNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 577
           +N+L       F        LD+S  +++    + L  LK L   S    NL 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 438 LFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIP----------VEFCQLDLLQILD 487
           L L + +L+  +   L  L  + ++ + +N L    P          ++     L  +  
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 488 ISDNNISGRLDLSCNKLIG-PIPPKIGNLTRIQTLNLSHNDLT---GSIPSTFSNLKHVE 543
           +++      L L  N+L        + +  R+  LNL  N L    G        L  V 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

Query: 544 SL 545
           S+
Sbjct: 121 SI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 497 LDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPS---------------------T 535
           L L+   L   +   +  L  +  L+LSHN L    P+                      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 536 FSNLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGE 579
            +NL  ++ L L NN+L        LV    L + ++  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG 399
           V +++   L  ++      +  +  LDLS+N+L    P   A+ C+ +       +    
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNAL 55

Query: 400 HMFSRNFNLANLMSLQLEGNHFIG-EISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTR 458
                  NL  L  L L  N        Q L  C  L  L L  N+L          L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 459 L 459
           +
Sbjct: 115 M 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 6/126 (4%)

Query: 290 RQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALD 349
           R L L +  L       +     +  LD+S+N  R   P     +     +  +  +   
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 350 GSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLA 409
                   N+  L+ L L NN+L         V C  L  L L  NSL      +     
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 410 NLMSLQ 415
            L S+ 
Sbjct: 115 MLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 105 ESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRI 164
           E +  + +L LS+     N  R L   L +L  L+ L  +DN L         N+  L+ 
Sbjct: 17  EQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALENVDGVA--NLPRLQE 69

Query: 165 LYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHF 197
           L +  N+L  S +  PLV    +  L L  N  
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 12/138 (8%)

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLD 481
           + ++   +SK        L+   L  +    L        +   ++     + +    + 
Sbjct: 9   VEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIP 65

Query: 482 LLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKH 541
            L  L++S+N +              +   +     ++ LNLS N+L             
Sbjct: 66  ELLSLNLSNNRLYRL---------DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 542 VESLDLSNNKLNGKIPHQ 559
           +E L L  N L+     Q
Sbjct: 117 LEELWLDGNSLSDTFRDQ 134

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 10/159 (6%)

Query: 48  LQSIASIFPSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESM 107
           ++ +  I     + S    ++ GL              L+  S+  A     L+II E++
Sbjct: 9   VEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAAT----LRIIEENI 64

Query: 108 PSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQELYMADNDLRGSLPWCLANMTSLRILYV 167
           P L  L+LSN+         +   +    +L+ L ++ N+L+            L  L++
Sbjct: 65  PELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 168 SYNQLTGSISSSPLVHLTSIEKL----YLSNNHFRIPIS 202
             N L+ +            E+      L  +    PI+
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPIA 161

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 43/324 (13%), Positives = 87/324 (26%), Gaps = 22/324 (6%)

Query: 81  KSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSLMHLQE 140
           KSL+   +++       + L        S+K + LS +T GT ++R L + + S   L+ 
Sbjct: 8   KSLKLDAITTEDEKSVFAVL----LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 141 LYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNHFRIP 200
              +D             +  L    +   +L     S      T+ E L    +     
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 201 ISLE-PLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLSRLSLSSSYGDGFIFPKFLY 259
             L                       + +      P   +         G    + K   
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 260 HQHDLEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDIS 319
               L    +    +  E    L            + + LA    L +   +      + 
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHL------------LLEGLAYCQELKVLDLQDNTFTHLG 231

Query: 320 NNNFRGHIPLEIGDILPSLHVFNISMNALDGSI-PSSFGNMNFLRILDLSNNQLTGE--- 375
           ++     +          L+   +S       +   S      L+ L L  N++  +   
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 291

Query: 376 -IPEHLAVGCVNLESLVLSNNSLK 398
            +   +     +L  L L+ N   
Sbjct: 292 TLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 30/321 (9%), Positives = 75/321 (23%), Gaps = 24/321 (7%)

Query: 254 FPKFLYHQHDLEYADLSHIKMNGEFPTWL---LENNTKLRQLSLVNDSLAGPFRLPIHSH 310
               L     ++   LS   +  E   WL   + +   L      +            + 
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNN 370
           + L    +          L    +  +          +D     +     +L    L   
Sbjct: 83  RLLLQALLKCPK------LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 136

Query: 371 QLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLS 430
                      +             S+               +   + +  +  +    +
Sbjct: 137 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 196

Query: 431 KCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 490
                    L    L+                    +     + +       L+ L ++D
Sbjct: 197 GIRPEGIEHLLLEGLAYCQELK----VLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252

Query: 491 NNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPST-----FSNLKHVESL 545
             +S R   +                 +QTL L +N++      T        +  +  L
Sbjct: 253 CLLSARGAAAVVDAF-----SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 546 DLSNNKLNGKIPHQLVELKTL 566
           +L+ N+   +    + E++ +
Sbjct: 308 ELNGNRF-SEEDDVVDEIREV 327

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 20/134 (14%), Positives = 33/134 (24%)

Query: 351 SIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLAN 410
                      L  L + N Q    +      G   L +L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 411 LMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLE 470
           L  L L  N       +++   S  E +   N        RWL          +P   L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 471 GPIPVEFCQLDLLQ 484
                    +    
Sbjct: 142 CHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 1/132 (0%)

Query: 362 LRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHF 421
              L  + +    +   HL       E  + +   L+         L  L +L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLD 481
                 +      L  L L+ N L     + +  L+  + ++  N            + +
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 482 LLQILDISDNNI 493
              +  + +  +
Sbjct: 129 EEGLGGVPEQKL 140

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 27/193 (13%), Positives = 57/193 (29%), Gaps = 14/193 (7%)

Query: 358 NMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE 417
            +       L    +T  + +        + +L      +K         L NL  +   
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 70

Query: 418 GNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEF 477
            N                  +  N       +           +     +          
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 478 CQLD-----LLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSI 532
            +L+     +  I  +S      +L+ S N++    P  + NLT ++ L++S N ++   
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD-- 186

Query: 533 PSTFSNLKHVESL 545
            S  + L ++ESL
Sbjct: 187 ISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	689
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.19

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=5.5e-29  Score=249.11  Aligned_cols=259  Identities=31%  Similarity=0.556  Sum_probs=220.5

Q ss_pred             CceEEEccCCcCCc--cccccccCCCCCcEEeccC-CcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccE
Q 040699          337 SLHVFNISMNALDG--SIPSSFGNMNFLRILDLSN-NQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMS  413 (689)
Q Consensus       337 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  413 (689)
                      +++.|+++++.+.+  .+|..+.++++|++|++++ |.+.|.+|..+.. +++|++|++++|++.+..+..+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~-L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc-ccccchhhhccccccccccccccchhhhcc
Confidence            56777777777665  3577888888888888876 7787788877655 888888888888888888888888889999


Q ss_pred             EeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCC-cEEEcCCCccccCCcccccCCCCCcEEeccccc
Q 040699          414 LQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRL-QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  492 (689)
Q Consensus       414 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  492 (689)
                      +++++|.+.+..|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999998888888899999999999999999988888888887776 789999999998888888776544 68777776


Q ss_pred             cccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEecc
Q 040699          493 ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  572 (689)
Q Consensus       493 ~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  572 (689)
                      ..           +.+|..+..+++++.+++++|.+.+.+| .+..+++|++|+|++|++++.+|..+..+++|+.|+++
T Consensus       209 ~~-----------~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         209 LE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             EE-----------ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             cc-----------cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            55           4788888899999999999999986554 68889999999999999999999999999999999999


Q ss_pred             CCcCcCCCCCccccccccCcccccCCcCCCCCCCCCCC
Q 040699          573 YNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPLPICR  610 (689)
Q Consensus       573 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~  610 (689)
                      +|+++|.+|+. ..++.++..++.+|+.+|+.|.+.|.
T Consensus       277 ~N~l~g~iP~~-~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             SSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCcccccCCCc-ccCCCCCHHHhCCCccccCCCCCCCC
Confidence            99999999974 57889999999999999998887773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.9e-25  Score=230.67  Aligned_cols=192  Identities=28%  Similarity=0.355  Sum_probs=116.1

Q ss_pred             cccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCC
Q 040699          355 SFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSS  434 (689)
Q Consensus       355 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  434 (689)
                      .+..+++++.+++++|.+++ ++..  ..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..  .+..+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~-~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISD-ITPL--GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCC-CGGG--GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             ccccccccceeeccCCccCC-CCcc--cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--ccccccc
Confidence            34455556666666665552 2221  1245666666666665542  23455666666666666655432  2556667


Q ss_pred             CCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcc
Q 040699          435 LEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGN  514 (689)
Q Consensus       435 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~  514 (689)
                      |++|++++|.+.+..  .+..++.++.+.+.+|.+++.  ..+..++++++|++++|++++            ++ .+..
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~------------l~-~l~~  327 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD------------IS-PVSS  327 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSC------------CG-GGGG
T ss_pred             CCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCC------------Cc-cccc
Confidence            777777766665322  255666677777777766642  235666777777777776652            22 2566


Q ss_pred             ccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCC
Q 040699          515 LTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  574 (689)
Q Consensus       515 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  574 (689)
                      +++|++|++++|++++ ++ .++++++|++|++++|++++..|  +..+++|+.|++++|
T Consensus       328 l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            6777777777777764 22 46677777777777777775543  666777777777766

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=1.5e-27  Score=238.52  Aligned_cols=252  Identities=28%  Similarity=0.428  Sum_probs=210.2

Q ss_pred             CcCEEEccCCcCcc--cCChhhhhcCCCceEEEccC-CcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCC
Q 040699          312 RLGMLDISNNNFRG--HIPLEIGDILPSLHVFNISM-NALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE  388 (689)
Q Consensus       312 ~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  388 (689)
                      +++.|+++++.+.+  .+|..+.. +++|+.|++++ |.+.+.+|..|.++++|++|++++|++.+ ++...+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhccccccc-cccccccchhhhc
Confidence            56777777777765  46666665 78888888876 67777788888888899999999988884 4444455588899


Q ss_pred             EEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCC-CEEECCCCCCCCcCChhhcCCCCCcEEEcCCC
Q 040699          389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL-EGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNN  467 (689)
Q Consensus       389 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  467 (689)
                      .++++.|.+....+..+..++.++.+++++|.+.+.+|..+..+.++ +.+++++|++++..+..+..+..+ .+++.++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            99999888888888888889999999999999988888888888776 889999999998888888776544 7999999


Q ss_pred             ccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeC
Q 040699          468 HLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDL  547 (689)
Q Consensus       468 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  547 (689)
                      ...+..|..+..+++++.+++++|.+.            ..+..+..+++|+.|++++|++++.+|..++++++|++|+|
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~------------~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLA------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEEC------------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             ccccccccccccccccccccccccccc------------ccccccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence            999889999999999999999998876            23456788899999999999999999999999999999999


Q ss_pred             cCCcCCCCCchhccCCCCCCEEeccCCcCcCC
Q 040699          548 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  579 (689)
Q Consensus       548 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  579 (689)
                      ++|+++|.+|+ +..+++|+.+++++|+..|.
T Consensus       276 s~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         276 SFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             cCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            99999988885 57788999999999985443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=4.6e-25  Score=227.75  Aligned_cols=189  Identities=29%  Similarity=0.392  Sum_probs=99.6

Q ss_pred             CCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCC
Q 040699          309 SHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLE  388 (689)
Q Consensus       309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  388 (689)
                      .+++++.+++++|.+++..|.   ..+++|+.|++++|.+++.  +.+..+++|+.+++++|.++ .++.  +..+++|+
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~  266 (384)
T d2omza2         195 KLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLT  266 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             cccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccC-CCCc--ccccccCC
Confidence            334444445554444422111   1234555555555555431  23445555555555555555 2222  22355566


Q ss_pred             EEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCc
Q 040699          389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH  468 (689)
Q Consensus       389 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  468 (689)
                      +++++++.+.+..  .+..++.++.+.+.+|.+.+.  ..+..+++++.|++++|.+.+..  .+..+++|++|++++|+
T Consensus       267 ~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         267 ELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             EeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            6666555555432  244555666666666655432  23555666666666666665432  25556666666666666


Q ss_pred             cccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCc
Q 040699          469 LEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN  526 (689)
Q Consensus       469 l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n  526 (689)
                      +++ ++ .+.++++|++|++++|++++            +++ +.++++|++|+|++|
T Consensus       341 l~~-l~-~l~~l~~L~~L~l~~N~l~~------------l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSD-VS-SLANLTNINWLSAGHNQISD------------LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCC-CG-GGGGCTTCCEEECCSSCCCB------------CGG-GTTCTTCSEEECCCE
T ss_pred             CCC-Ch-hHcCCCCCCEEECCCCcCCC------------Chh-hccCCCCCEeeCCCC
Confidence            653 22 45666666666666666552            222 566666777766665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.5e-26  Score=223.49  Aligned_cols=266  Identities=20%  Similarity=0.238  Sum_probs=218.5

Q ss_pred             EEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEecc-C
Q 040699          340 VFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLE-G  418 (689)
Q Consensus       340 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~  418 (689)
                      .++.+++.++ .+|..+.  +++++|+|++|+++ .+|...+.++++|++|++++|.+..+....+..++.++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566777777 4555443  57899999999998 8888888889999999999999999988888899999998765 5


Q ss_pred             CcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccc
Q 040699          419 NHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLD  498 (689)
Q Consensus       419 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~  498 (689)
                      +.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|.++++.+..|..+++|+.|++++|.++.   
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~---  167 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS---  167 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE---
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc---
Confidence            56666678889999999999999999987777788889999999999999998888889999999999999998763   


Q ss_pred             cCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcC
Q 040699          499 LSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  578 (689)
Q Consensus       499 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  578 (689)
                              ..+..|.++++|+.+++++|++++..|..|.++++|++|++++|++.+..+..|..+++|+.|++++|++.|
T Consensus       168 --------l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         168 --------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             --------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             --------cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence                    566788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccCcccccCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCc
Q 040699          579 EIPEWEAQFATFNENSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL  628 (689)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~  628 (689)
                      .++... ....++......+..       .|..|...+|.++.+..++++
T Consensus       240 ~C~~~~-l~~~l~~~~~~~~~~-------~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         240 DCRARP-LWAWLQKFRGSSSEV-------PCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             SGGGHH-HHHHHHHCCSEECCC-------BEEESGGGTTCBGGGSCGGGS
T ss_pred             CccchH-HHHHHHhCcCCCCce-------EeCCchHHcCCccccCCHHHC
Confidence            876311 111222222222222       566677777776666665554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.5e-24  Score=211.64  Aligned_cols=247  Identities=22%  Similarity=0.262  Sum_probs=176.6

Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEE
Q 040699          311 KRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESL  390 (689)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  390 (689)
                      +++++|++++|+++ .+|...+..+++|++|++++|.+....|..|.+++.|++|++++|+++ .+|...   ...++.|
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~---~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch---hhhhhhh
Confidence            45677777777776 566555555677777777777777666667777777777777777776 666543   3467777


Q ss_pred             EccCCcCCccCcccccCCCCccEEeccCCccc--ccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCc
Q 040699          391 VLSNNSLKGHMFSRNFNLANLMSLQLEGNHFI--GEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH  468 (689)
Q Consensus       391 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  468 (689)
                      ++..|.+.+.....+.....+..++...+...  ...+..+..+++|+.+++++|.+.. ++..  .+++|+.|++++|.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCc
Confidence            77777777666666666677777777666432  2334567777888888888887763 3433  25678888888888


Q ss_pred             cccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCc
Q 040699          469 LEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLS  548 (689)
Q Consensus       469 l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  548 (689)
                      .....+..|.+++.+++|++++|.+++           ..+..+.++++|++|+|++|+++ .+|++|..+++|++|+|+
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISA-----------VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCE-----------ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             CCCCChhHhhccccccccccccccccc-----------cccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence            887777788888888888888877763           45667778888888888888887 456778888888888888


Q ss_pred             CCcCCCCCchhc------cCCCCCCEEeccCCcCc
Q 040699          549 NNKLNGKIPHQL------VELKTLEVFSVAYNNLS  577 (689)
Q Consensus       549 ~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~  577 (689)
                      +|+|+.+....|      ....+|+.|++++|++.
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            888886544443      34577888888888875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=213.46  Aligned_cols=254  Identities=21%  Similarity=0.217  Sum_probs=209.2

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699          314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS  393 (689)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  393 (689)
                      ..++.++.+++ .+|..+.   +.+++|+|++|.+++..+.+|.++++|++|++++|++. .++...+.++..++.+...
T Consensus        14 ~~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence            34677777777 7787553   47899999999998777778999999999999999998 7777787778889988765


Q ss_pred             -CCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccC
Q 040699          394 -NNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGP  472 (689)
Q Consensus       394 -~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~  472 (689)
                       .+.+....+..+.++++|++|++++|.+....+..+..+++|+.+++++|.+++..+.+|..+++|+.|++++|+++..
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence             5667777788889999999999999998877777888899999999999999877778888899999999999999988


Q ss_pred             CcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcC
Q 040699          473 IPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKL  552 (689)
Q Consensus       473 ~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  552 (689)
                      .+.+|.++++|+++++++|.+++           ..|..|.++++|++|++++|++.+..+..|+.+++|++|++++|++
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~-----------i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             chhhhccccccchhhhhhccccc-----------cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            88899999999999999988763           6688899999999999999999988888999999999999999998


Q ss_pred             CCCCchhccCCCCCCEEeccCCcCcCCCCCcc
Q 040699          553 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWE  584 (689)
Q Consensus       553 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  584 (689)
                      ...-+.. .-...++.+....+.+.|..|..+
T Consensus       238 ~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l  268 (284)
T d1ozna_         238 VCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (284)
T ss_dssp             ECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             CCCccch-HHHHHHHhCcCCCCceEeCCchHH
Confidence            8643321 011234455566677888777644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.8e-23  Score=207.90  Aligned_cols=281  Identities=19%  Similarity=0.199  Sum_probs=189.9

Q ss_pred             CCEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEc
Q 040699          264 LEYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNI  343 (689)
Q Consensus       264 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  343 (689)
                      .+.++-++.+++ .+|..+   .+++++|++++|+++.+.+..|.++++|++|++++|.+. .++...+..+++|+.|++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            344444444444 444432   246677777777777666666777777777777777776 444444455677777777


Q ss_pred             cCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCC--ccCcccccCCCCccEEeccCCcc
Q 040699          344 SMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLK--GHMFSRNFNLANLMSLQLEGNHF  421 (689)
Q Consensus       344 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~~  421 (689)
                      ++|+++.. |..  ....++.|++.+|.+. .++...+.....+..++...|...  ......+..+++|+.+++++|.+
T Consensus        87 ~~n~l~~l-~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLKEL-PEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCSBC-CSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCccCcC-ccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            77776643 322  2346677777777776 566666666667777777666433  23344566677788888888776


Q ss_pred             cccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCC
Q 040699          422 IGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSC  501 (689)
Q Consensus       422 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~  501 (689)
                      ... +..  .+++|++|++++|.+.+..+.+|.+++.++.|++++|.+.+..+..+.++++|++|++++|.++       
T Consensus       163 ~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-------  232 (305)
T d1xkua_         163 TTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------  232 (305)
T ss_dssp             CSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------
T ss_pred             ccc-Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-------
Confidence            543 322  3567888888888887777778888888888888888888777778888888888888888776       


Q ss_pred             CcccCCCchhhccccccceEeccCcccccCCcccc------cCCCCCCEEeCcCCcCC--CCCchhccCCCCCCE
Q 040699          502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTF------SNLKHVESLDLSNNKLN--GKIPHQLVELKTLEV  568 (689)
Q Consensus       502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~  568 (689)
                           .+|+.+..+++|++|+|++|+|+.+.+..|      ....+|+.|+|++|++.  ...|..|.-+.....
T Consensus       233 -----~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         233 -----KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             -----SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             -----ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcc
Confidence                 567778888888888888888886544443      45678899999999876  355566655444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-23  Score=203.16  Aligned_cols=206  Identities=20%  Similarity=0.196  Sum_probs=168.8

Q ss_pred             cCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCC
Q 040699          357 GNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLE  436 (689)
Q Consensus       357 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  436 (689)
                      .+...+.+++.+++.++ .+|..+.   +++++|+|++|.++++.+..|.++++|++|+|++|+++...  .+..+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccc
Confidence            34455666677777776 6665543   46778888888887777777778888888888888876442  356788899


Q ss_pred             EEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccc
Q 040699          437 GLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLT  516 (689)
Q Consensus       437 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~  516 (689)
                      +|++++|++. ..+..+.++++|+.|++++|.+....+..+..+.++++|++++|.++.           ..+..+..++
T Consensus        81 ~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-----------l~~~~~~~l~  148 (266)
T d1p9ag_          81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-----------LPPGLLTPTP  148 (266)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----------CCTTTTTTCT
T ss_pred             cccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccce-----------eccccccccc
Confidence            9999999887 456678888999999999999988888888889999999999988762           4556678899


Q ss_pred             ccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          517 RIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       517 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      +++.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|++++||+.|.+.
T Consensus       149 ~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            9999999999999888889999999999999999999 678888889999999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-23  Score=199.73  Aligned_cols=206  Identities=22%  Similarity=0.231  Sum_probs=180.4

Q ss_pred             CCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEE
Q 040699          383 GCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYI  462 (689)
Q Consensus       383 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  462 (689)
                      ....+.+++.+++.++.++ ..+  .+++++|+|++|++++..+..|..+++|++|++++|.++. ++ .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP-~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCeeC-cCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            4567788899999998754 333  2589999999999998888899999999999999999984 33 35789999999


Q ss_pred             EcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCC
Q 040699          463 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHV  542 (689)
Q Consensus       463 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  542 (689)
                      ++++|+++. .+..+..+++|++|++++|.+..           ..+..+..+.++++|++++|.++...+..+..++++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~-----------~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-----------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCC-----------CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccccc-cccccccccccccccccccccce-----------eeccccccccccccccccccccceeccccccccccc
Confidence            999999984 56788999999999999998763           456678889999999999999998888889999999


Q ss_pred             CEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCcccccCCcCCCCCCC
Q 040699          543 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNENSYEGNTFLCGLPL  606 (689)
Q Consensus       543 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~  606 (689)
                      +.+++++|++++..++.|..+++|+.|++++|.++ .+|+.+..+..++.+++.||||.|+|..
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            99999999999988899999999999999999999 7777666788999999999999999854

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=165.40  Aligned_cols=217  Identities=18%  Similarity=0.173  Sum_probs=100.9

Q ss_pred             EEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccC
Q 040699          315 MLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSN  394 (689)
Q Consensus       315 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  394 (689)
                      .++.++..++ .+|..++   ++++.|++++|.++...+.+|.++++|++|++++|.+...++...|.++++++++.+..
T Consensus        12 ~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4444544444 4444332   24555555555555444444555555555555555554344444444455555544432


Q ss_pred             -CcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccC
Q 040699          395 -NSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGP  472 (689)
Q Consensus       395 -n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~  472 (689)
                       |.+....                        +..|.++++|+++++++|.+....+ ..+..+..+..+...++.+...
T Consensus        88 ~n~l~~~~------------------------~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          88 ANNLLYIN------------------------PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CTTCCEEC------------------------TTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             cccccccc------------------------cccccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence             3333333                        3444444444444444444432211 1122233344444444444444


Q ss_pred             CcccccCCC-CCcEEeccccccccccccCCCcccCCCchhhccccccceE-eccCcccccCCcccccCCCCCCEEeCcCC
Q 040699          473 IPVEFCQLD-LLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTL-NLSHNDLTGSIPSTFSNLKHVESLDLSNN  550 (689)
Q Consensus       473 ~~~~~~~l~-~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  550 (689)
                      .+..|..++ .++.|++++|+++            .++......++++++ ++++|+++.+.+..|.++++|++|++++|
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~------------~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQ------------EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCC------------EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             cccccccccccceeeeccccccc------------ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC
Confidence            444444432 4555555555544            122222222333333 34555565444455666666666666666


Q ss_pred             cCCCCCchhccCCCCCCEEec
Q 040699          551 KLNGKIPHQLVELKTLEVFSV  571 (689)
Q Consensus       551 ~l~~~~~~~~~~l~~L~~L~l  571 (689)
                      +++...+..|..+++|+.+++
T Consensus       212 ~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         212 RIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCCCCSSSCTTCCEEESSSE
T ss_pred             cCCccCHHHHcCCcccccCcC
Confidence            666444444555544444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.2e-17  Score=155.39  Aligned_cols=202  Identities=20%  Similarity=0.295  Sum_probs=125.0

Q ss_pred             EEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCc
Q 040699          341 FNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNH  420 (689)
Q Consensus       341 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  420 (689)
                      ++++.+.+++..  .++.+.+|+.|++.+|.++ .++ . +..+++|++|++++|.+.+..  .+..+++++.+++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            344444444322  3445566666666666665 443 2 233666666666666665533  25566667777777666


Q ss_pred             ccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccC
Q 040699          421 FIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLS  500 (689)
Q Consensus       421 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls  500 (689)
                      ++..  ..+.++++|+.++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+..     
T Consensus        97 ~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~-----  165 (227)
T d1h6ua2          97 LKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD-----  165 (227)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-----
T ss_pred             cccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccccc-----
Confidence            5432  2456677777777777665532  2345566777777777766532  235666777777777776641     


Q ss_pred             CCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEecc
Q 040699          501 CNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  572 (689)
Q Consensus       501 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  572 (689)
                              ...+.++++|++|++++|++++. + .++++++|++|++++|+++...|  +..+++|+.|+++
T Consensus       166 --------~~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         166 --------LTPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             --------CGGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             --------chhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence                    22366777788888888877753 2 36777888888888888775432  6677788887775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.3e-15  Score=153.80  Aligned_cols=69  Identities=25%  Similarity=0.327  Sum_probs=37.1

Q ss_pred             CCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCccc
Q 040699          456 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPST  535 (689)
Q Consensus       456 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  535 (689)
                      +++|++|++++|+++. +|.   .+++|+.|++++|+++            .+|+.   +++|++|++++|+++ .+|+.
T Consensus       283 ~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~------------~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA------------EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS------------CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             CCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC------------ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            4556666666666652 332   2456666666666655            33332   345667777777766 34432


Q ss_pred             ccCCCCCCEEeC
Q 040699          536 FSNLKHVESLDL  547 (689)
Q Consensus       536 ~~~l~~L~~L~L  547 (689)
                         ..+|+.|.+
T Consensus       343 ---~~~L~~L~~  351 (353)
T d1jl5a_         343 ---PESVEDLRM  351 (353)
T ss_dssp             ---CTTCCEEEC
T ss_pred             ---ccccCeeEC
Confidence               234555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.7e-15  Score=153.07  Aligned_cols=114  Identities=26%  Similarity=0.297  Sum_probs=69.9

Q ss_pred             CCCcEEECCCCcCCcccCCCCCCCCCCCCeeeCCCCccccCCccchhhhhcCCCccEEECCCCCCCCCCCccCccccCCC
Q 040699           56 PSLKNLSMSGCEVNGLVRGQGFPHFKSLEHLDMSSTRIALNTSFLQIIGESMPSLKYLSLSNSTRGTNSSRILDQGLCSL  135 (689)
Q Consensus        56 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l  135 (689)
                      .++++|||+++.++. +|.    ..++|++|++++|++   ..++..    ..+|+.|++++|....    ++.  +  .
T Consensus        38 ~~l~~LdLs~~~L~~-lp~----~~~~L~~L~Ls~N~l---~~lp~~----~~~L~~L~l~~n~l~~----l~~--l--p   97 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSL---TELPEL----PQSLKSLLVDNNNLKA----LSD--L--P   97 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCC---SSCCCC----CTTCCEEECCSSCCSC----CCS--C--C
T ss_pred             cCCCEEEeCCCCCCC-CCC----CCCCCCEEECCCCCC---cccccc----hhhhhhhhhhhcccch----hhh--h--c
Confidence            368888888888874 342    246788888888887   344432    4577888887764332    221  1  1


Q ss_pred             CCCCEEeCCCCcCccCCCccccCCCCCcEEEccceeeeeecCcccccCCCCCCEEeccCCc
Q 040699          136 MHLQELYMADNDLRGSLPWCLANMTSLRILYVSYNQLTGSISSSPLVHLTSIEKLYLSNNH  196 (689)
Q Consensus       136 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  196 (689)
                      +.|++|++++|.++ .+|. ++.+++|++|+++++.+. ..+.    ....+..+.+..+.
T Consensus        98 ~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~  151 (353)
T d1jl5a_          98 PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQ  151 (353)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSC
T ss_pred             cccccccccccccc-cccc-hhhhccceeecccccccc-cccc----ccccccchhhcccc
Confidence            35777777777776 3343 566777777777777665 2222    23445555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=5.5e-17  Score=152.58  Aligned_cols=186  Identities=24%  Similarity=0.343  Sum_probs=114.7

Q ss_pred             CCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEe
Q 040699          336 PSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQ  415 (689)
Q Consensus       336 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  415 (689)
                      .+|+.|++.+|.+++.  ..+..+++|++|++++|++. .++.  +..+++++.+++++|.++.+  ..+.++++|+.++
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--cccccccccccccccccccc--ccccccccccccc
Confidence            4556666666655532  23556666666666666665 3322  33466666666666665542  2355666677777


Q ss_pred             ccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccccc
Q 040699          416 LEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  495 (689)
Q Consensus       416 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  495 (689)
                      ++++.....  ..+...+.++.+.++++.+...  ..+.+.++|++|++++|.+....  .+.++++|++|++++|+++ 
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~-  186 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS-  186 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccC-
Confidence            766665432  2355566777777777766532  23556677777777777765332  3667777777777777765 


Q ss_pred             ccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcC
Q 040699          496 RLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSN  549 (689)
Q Consensus       496 ~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  549 (689)
                                 .++ .+.++++|++|++++|++++..|  ++++++|++|++++
T Consensus       187 -----------~l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 -----------DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             -----------CCG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             -----------CCh-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence                       232 36677788888888888775432  67778888887763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.8e-18  Score=160.51  Aligned_cols=182  Identities=24%  Similarity=0.201  Sum_probs=86.3

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEccC-CcCCccccccccCCCCCcEEe
Q 040699          288 KLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNISM-NALDGSIPSSFGNMNFLRILD  366 (689)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  366 (689)
                      ++++|++++|.++.+.+..|.++++|++|++++|.+.+.++...+..+++++++.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555555544445555555555555555554344444444445555555433 334444444455555555555


Q ss_pred             ccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCC-CCCEEECCCCCC
Q 040699          367 LSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCS-SLEGLFLNNNNL  445 (689)
Q Consensus       367 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i  445 (689)
                      +++|.+. ..+...                       .+..++.+..+...++.+....+..|.+++ .++.|++++|++
T Consensus       110 l~~~~l~-~~~~~~-----------------------~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1         110 ISNTGIK-HLPDVH-----------------------KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             EESCCCC-SCCCCT-----------------------TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cchhhhc-cccccc-----------------------ccccccccccccccccccccccccccccccccceeeecccccc
Confidence            5555544 222111                       112233333333344444433334444433 455555555555


Q ss_pred             CCcCChhhcCCCCCcEE-EcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699          446 SGKIPRWLGDLTRLQYI-IMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       446 ~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  494 (689)
                      +...+..+. ..+++.+ .+++|.++.+.+..|.++++|++|++++|+++
T Consensus       166 ~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         166 QEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            533333332 2333333 34555555444455566666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=3.9e-18  Score=155.69  Aligned_cols=156  Identities=23%  Similarity=0.302  Sum_probs=74.8

Q ss_pred             CCCEEECCCCCCCC-cCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhh
Q 040699          434 SLEGLFLNNNNLSG-KIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKI  512 (689)
Q Consensus       434 ~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~  512 (689)
                      ++++|+|++|.|++ ..+..|.++++|+.|++++|.+....+..|..+++|++|++++|+++.           ..+..|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~-----------l~~~~F   98 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-----------ISNKMF   98 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-----------ECSSSS
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc-----------cCHHHH
Confidence            45555555555543 223444555555555555555555555555555555555555554441           333445


Q ss_pred             ccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccccccccCc
Q 040699          513 GNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEAQFATFNE  592 (689)
Q Consensus       513 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  592 (689)
                      .++++|++|+|++|+|+++.+++|..+++|++|+|++|++....+..+. ...++...+..|.+.|..|..   +.....
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~p~~---l~~~~l  174 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK---VRDVQI  174 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT---TTTSBG
T ss_pred             hCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCeEeCCChh---hcCCEe
Confidence            5555555555555555555555555555555555555555432221110 112333344445555544432   223334


Q ss_pred             ccccCCcCCCCC
Q 040699          593 NSYEGNTFLCGL  604 (689)
Q Consensus       593 ~~~~~n~~~c~~  604 (689)
                      .++..|.+.|..
T Consensus       175 ~~L~~n~l~C~~  186 (192)
T d1w8aa_         175 KDLPHSEFKCSS  186 (192)
T ss_dssp             GGSCTTTCCCCC
T ss_pred             eecCHhhCcCCC
Confidence            445555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-19  Score=190.42  Aligned_cols=177  Identities=18%  Similarity=0.053  Sum_probs=92.6

Q ss_pred             CCCcCEEEccCCcCcccCChh---hhhcCCCceEEEccCCcCCcccccc-----ccCCCCCcEEeccCCcccccchhh--
Q 040699          310 HKRLGMLDISNNNFRGHIPLE---IGDILPSLHVFNISMNALDGSIPSS-----FGNMNFLRILDLSNNQLTGEIPEH--  379 (689)
Q Consensus       310 ~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~--  379 (689)
                      ...++.+++++|.+.......   .....+.++.+++++|.+.......     ......|+.++++++.+.......  
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            345555555555544211111   1122455666666666554221111     112345666777666665332211  


Q ss_pred             -hhcCCCCCCEEEccCCcCCccCccc----c-cCCCCccEEeccCCccccc----ccccccCCCCCCEEECCCCCCCCcC
Q 040699          380 -LAVGCVNLESLVLSNNSLKGHMFSR----N-FNLANLMSLQLEGNHFIGE----ISQSLSKCSSLEGLFLNNNNLSGKI  449 (689)
Q Consensus       380 -~~~~l~~L~~L~l~~n~l~~~~~~~----~-~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~~  449 (689)
                       +....++|++|+|++|.+.+.....    + ...+.|++|+|++|.++..    +.+.+..+++|++|++++|+++...
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence             2233556777777777665432222    1 2355677777777777532    3345566788888888888776432


Q ss_pred             C----hhhc-CCCCCcEEEcCCCccccCCcccc----cCCCCCcEE
Q 040699          450 P----RWLG-DLTRLQYIIMPNNHLEGPIPVEF----CQLDLLQIL  486 (689)
Q Consensus       450 ~----~~l~-~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L  486 (689)
                      .    ..+. ....|+.|++.+|.+.......+    ...++|+.|
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            2    2232 23468888888887764333322    334555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-19  Score=189.82  Aligned_cols=117  Identities=18%  Similarity=0.217  Sum_probs=61.0

Q ss_pred             CCccEEeccCCcccccc----cccccCCCCCCEEECCCCCCCCc----CChhhc-CCCCCcEEEcCCCccccC----Ccc
Q 040699          409 ANLMSLQLEGNHFIGEI----SQSLSKCSSLEGLFLNNNNLSGK----IPRWLG-DLTRLQYIIMPNNHLEGP----IPV  475 (689)
Q Consensus       409 ~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~-~l~~L~~L~l~~n~l~~~----~~~  475 (689)
                      ..|+.+++++|.+....    ...+..+++|++|+|++|.+.+.    ++..+. ..+.|++|++++|.+++.    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            45556666655554332    12334455677777777766532    222232 345677777777776532    233


Q ss_pred             cccCCCCCcEEeccccccccccccCCCcccCCCchhhc-cccccceEeccCcccccCC
Q 040699          476 EFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIG-NLTRIQTLNLSHNDLTGSI  532 (689)
Q Consensus       476 ~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~  532 (689)
                      .+..+++|++|+|++|+++..      .+. .+...+. +...|+.|++.+|.+....
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~------g~~-~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDA------GIL-QLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHH------HHH-HHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHhcCCCCCEEECCCCcCCHH------HHH-HHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            445567777777777766421      000 0111222 2235777777777776433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.7e-17  Score=151.33  Aligned_cols=128  Identities=22%  Similarity=0.336  Sum_probs=84.9

Q ss_pred             cEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCc-cCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECC
Q 040699          363 RILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKG-HMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLN  441 (689)
Q Consensus       363 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  441 (689)
                      +.++.++++++ .+|..++   +++++|+|++|++++ .....|.++++|+.|++++|.+....+..|..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            45666666666 6665542   366677777776654 344555666667777776666666666666667777777777


Q ss_pred             CCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccc
Q 040699          442 NNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  494 (689)
Q Consensus       442 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  494 (689)
                      +|++....+.+|.++++|++|+|++|+++++.+++|..+++|++|+|++|++.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            77776666666677777777777777777666666777777777777776654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.2e-16  Score=146.05  Aligned_cols=163  Identities=25%  Similarity=0.402  Sum_probs=101.5

Q ss_pred             CCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEc
Q 040699          385 VNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIM  464 (689)
Q Consensus       385 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  464 (689)
                      .+|++|++++|.+....  .+..+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            35555666655555432  2445666666666666665432  24566677777777776663 33 3566677777777


Q ss_pred             CCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCE
Q 040699          465 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVES  544 (689)
Q Consensus       465 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  544 (689)
                      ++|.+...  ..+..++.++.+++++|.++             .+..+..+++|+.+++++|++++..  .++++++|++
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~-------------~~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~  182 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKIT-------------DITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQN  182 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCC-------------CCGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             cccccccc--cccccccccccccccccccc-------------ccccccccccccccccccccccccc--cccCCCCCCE
Confidence            77766532  34666677777777777664             1234556677777777777776432  2667777777


Q ss_pred             EeCcCCcCCCCCchhccCCCCCCEEecc
Q 040699          545 LDLSNNKLNGKIPHQLVELKTLEVFSVA  572 (689)
Q Consensus       545 L~L~~N~l~~~~~~~~~~l~~L~~L~l~  572 (689)
                      |++++|+++. +| .+..+++|+.|+++
T Consensus       183 L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         183 LYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             EECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            7777777764 34 46777777777775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.8e-16  Score=144.05  Aligned_cols=161  Identities=29%  Similarity=0.381  Sum_probs=93.3

Q ss_pred             CCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEE
Q 040699          384 CVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYII  463 (689)
Q Consensus       384 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  463 (689)
                      ++++++|++++|.+...  ..+..+++|++|++++|++++..+  +.++++|+.|++++|.+.. ++ .+.++++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccc
Confidence            34555555555555442  224455666666666666554322  5666666666666666552 22 355666666666


Q ss_pred             cCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCC
Q 040699          464 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVE  543 (689)
Q Consensus       464 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  543 (689)
                      +++|.....  ..+..+++|+.|++++|.+.            .+ +.+..+++|+.|++++|++++..  .++++++|+
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~------------~~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~  175 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTIS------------DI-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLE  175 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCC------------CC-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhc------------cc-ccccccccccccccccccccCCc--cccCCCCCC
Confidence            666665532  23556666667766666654            22 24566667777777777766432  366677777


Q ss_pred             EEeCcCCcCCCCCchhccCCCCCCEE
Q 040699          544 SLDLSNNKLNGKIPHQLVELKTLEVF  569 (689)
Q Consensus       544 ~L~L~~N~l~~~~~~~~~~l~~L~~L  569 (689)
                      +|++++|+++.. + .+..+++|+.|
T Consensus       176 ~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             EEECCCCCCCCC-c-cccCCCCCCcC
Confidence            777777776643 2 35566666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=7.3e-16  Score=142.47  Aligned_cols=163  Identities=28%  Similarity=0.340  Sum_probs=85.9

Q ss_pred             CCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEE
Q 040699          360 NFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLF  439 (689)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  439 (689)
                      .+|+.|++++|.+. .++.  ...+++|++|++++|++++..  .+..+++|+.|++++|+++.. + .+..+++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccccc
Confidence            34444444444444 2221  122445555555555544422  234455555555555555432 2 355556666666


Q ss_pred             CCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccc
Q 040699          440 LNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQ  519 (689)
Q Consensus       440 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~  519 (689)
                      +++|.+..  ...+..++.++.+++++|.+++  +..+..+++|+++++++|.++            .++ .+.++++|+
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~------------~i~-~l~~l~~L~  181 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS------------DIV-PLAGLTKLQ  181 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC------------CCG-GGTTCTTCC
T ss_pred             cccccccc--cccccccccccccccccccccc--ccccccccccccccccccccc------------ccc-cccCCCCCC
Confidence            66665542  2235555666666666666553  223455666666666666654            222 255666677


Q ss_pred             eEeccCcccccCCcccccCCCCCCEEeCc
Q 040699          520 TLNLSHNDLTGSIPSTFSNLKHVESLDLS  548 (689)
Q Consensus       520 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  548 (689)
                      +|++++|+++.. | .+.++++|++|+|+
T Consensus       182 ~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         182 NLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             EEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            777777766632 3 46666777777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.6e-15  Score=138.86  Aligned_cols=161  Identities=25%  Similarity=0.358  Sum_probs=88.3

Q ss_pred             CCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEE
Q 040699          359 MNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGL  438 (689)
Q Consensus       359 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  438 (689)
                      +.++++|++++|.+. .++.  ...+++|++|++++|++++..+  +.++++|++|++++|.+....  .+.++++|+.|
T Consensus        39 l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccc
Confidence            444555555555554 3321  1225555555555555554322  455556666666655544321  35566666666


Q ss_pred             ECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchhhcccccc
Q 040699          439 FLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRI  518 (689)
Q Consensus       439 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L  518 (689)
                      ++++|.+...  ..+..+++|+.|++++|++.. . ..+..+++|++|++++|.++            .+ +.+.++++|
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~------------~l-~~l~~l~~L  174 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT------------DL-KPLANLTTL  174 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC------------CC-GGGTTCTTC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc------------CC-ccccCCCCC
Confidence            6666655422  235556666666666666652 2 24556666666666666654            12 235666777


Q ss_pred             ceEeccCcccccCCcccccCCCCCCEE
Q 040699          519 QTLNLSHNDLTGSIPSTFSNLKHVESL  545 (689)
Q Consensus       519 ~~L~L~~n~l~~~~~~~~~~l~~L~~L  545 (689)
                      ++|++++|++++. + .++++++|++|
T Consensus       175 ~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         175 ERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             CEEECCCCCCCCC-c-cccCCCCCCcC
Confidence            7777777776643 2 35666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=153.70  Aligned_cols=224  Identities=17%  Similarity=0.171  Sum_probs=148.8

Q ss_pred             CEEEccCCcCcCCCChHHHhcCCCCcEEEeeCCCCCCCCCCCCCCCCCcCEEEccCCcCcccCChhhhhcCCCceEEEcc
Q 040699          265 EYADLSHIKMNGEFPTWLLENNTKLRQLSLVNDSLAGPFRLPIHSHKRLGMLDISNNNFRGHIPLEIGDILPSLHVFNIS  344 (689)
Q Consensus       265 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  344 (689)
                      +.+|++++.+.......+..  .....+.+....+..... ......+|++|+++++.+.+.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788877665443333322  234555555544433222 233456899999999988755555667778999999999


Q ss_pred             CCcCCccccccccCCCCCcEEeccCC-cccccchhhhhcCCCCCCEEEccCCc-CCccCc-ccc-cCCCCccEEeccCCc
Q 040699          345 MNALDGSIPSSFGNMNFLRILDLSNN-QLTGEIPEHLAVGCVNLESLVLSNNS-LKGHMF-SRN-FNLANLMSLQLEGNH  420 (689)
Q Consensus       345 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~-~~l~~L~~L~L~~n~  420 (689)
                      ++.+.+..+..+..+++|++|++++| .+++..-..+..++++|++|++++|. +++... ..+ ..+++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99988777788888999999999985 56543334455668999999998863 433211 112 235788888888753


Q ss_pred             --cccc-ccccccCCCCCCEEECCCC-CCCCcCChhhcCCCCCcEEEcCCC-ccccCCcccccCCCCCcEEecccc
Q 040699          421 --FIGE-ISQSLSKCSSLEGLFLNNN-NLSGKIPRWLGDLTRLQYIIMPNN-HLEGPIPVEFCQLDLLQILDISDN  491 (689)
Q Consensus       421 --~~~~-~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  491 (689)
                        ++.. +......+++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|++|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              2221 2334456788888888876 466556666777788888888875 455555555667777777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=148.29  Aligned_cols=250  Identities=18%  Similarity=0.209  Sum_probs=153.6

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCceEEEccCCcCCccccccccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEcc
Q 040699          314 GMLDISNNNFRGHIPLEIGDILPSLHVFNISMNALDGSIPSSFGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLS  393 (689)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  393 (689)
                      +++|++++.+...+......  ..+..+.+....+...... .....+|++||++++.+.......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35677776654333333332  2345666665554432222 33456889999999888766666677778999999999


Q ss_pred             CCcCCccCcccccCCCCccEEeccCCc-cccc-ccccccCCCCCCEEECCCCC-CCCc-CChhhc-CCCCCcEEEcCCCc
Q 040699          394 NNSLKGHMFSRNFNLANLMSLQLEGNH-FIGE-ISQSLSKCSSLEGLFLNNNN-LSGK-IPRWLG-DLTRLQYIIMPNNH  468 (689)
Q Consensus       394 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~-~~~~~~~l~~L~~L~L~~n~-i~~~-~~~~l~-~l~~L~~L~l~~n~  468 (689)
                      +|.+.+.....+..+++|++|++++|. ++.. .......+++|++|++++|. ++.. ....+. ..++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            988887777777788889999998864 3322 22334578889999998863 4321 122222 34678888888753


Q ss_pred             --cccC-CcccccCCCCCcEEeccccc-cccccccCCCcccCCCchhhccccccceEeccCc-ccccCCcccccCCCCCC
Q 040699          469 --LEGP-IPVEFCQLDLLQILDISDNN-ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHN-DLTGSIPSTFSNLKHVE  543 (689)
Q Consensus       469 --l~~~-~~~~~~~l~~L~~L~l~~n~-~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  543 (689)
                        ++.. +.....++++|++|++++|. ++           +.....+..+++|++|++++| .+++.....++++++|+
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~it-----------d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----------NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----------GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccccccccccccccCCC-----------chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence              3221 22234567788888888764 33           234455667778888888875 46655555667778888


Q ss_pred             EEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCC
Q 040699          544 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  580 (689)
Q Consensus       544 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  580 (689)
                      +|+++++--.+..+.....+++|   .+..++++...
T Consensus       229 ~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~  262 (284)
T d2astb2         229 TLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIA  262 (284)
T ss_dssp             EEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTT
T ss_pred             EEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCC
Confidence            88887772222222222334444   34555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.9e-14  Score=124.77  Aligned_cols=128  Identities=20%  Similarity=0.197  Sum_probs=84.8

Q ss_pred             ccCCCCCcEEeccCCcccccchhhhhcCCCCCCEEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCC
Q 040699          356 FGNMNFLRILDLSNNQLTGEIPEHLAVGCVNLESLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSL  435 (689)
Q Consensus       356 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  435 (689)
                      |.++.++++|++++|+|+ .++ ..+..+++|+.|++++|.+..+  ..+..+++|++|++++|+++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            556667777888888776 665 3444577777788877777754  346667777777777777776666666677777


Q ss_pred             CEEECCCCCCCCcCC-hhhcCCCCCcEEEcCCCccccCC---cccccCCCCCcEEe
Q 040699          436 EGLFLNNNNLSGKIP-RWLGDLTRLQYIIMPNNHLEGPI---PVEFCQLDLLQILD  487 (689)
Q Consensus       436 ~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~  487 (689)
                      ++|++++|++..... ..+..+++|++|++++|+++...   +..+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777777763221 35666677777777777765332   12355566666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.5e-14  Score=124.28  Aligned_cols=126  Identities=18%  Similarity=0.150  Sum_probs=58.1

Q ss_pred             CCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCch
Q 040699          431 KCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPP  510 (689)
Q Consensus       431 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~  510 (689)
                      ++..+++|+|++|+|+. ++..+..+++|+.|++++|+++..  ..|..+++|++|++++|.++.           ..+.
T Consensus        16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~-----------l~~~   81 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-----------IGEG   81 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-----------ECSC
T ss_pred             CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccC-----------CCcc
Confidence            44444555555555442 233334444555555555554432  124445555555555554441           1122


Q ss_pred             hhccccccceEeccCcccccCCc-ccccCCCCCCEEeCcCCcCCCCC---chhccCCCCCCEEe
Q 040699          511 KIGNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNNKLNGKI---PHQLVELKTLEVFS  570 (689)
Q Consensus       511 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~  570 (689)
                      .+..+++|++|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|+.||
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            23445555555555555543211 23455555555555555554221   12344455665555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.4e-13  Score=114.19  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=15.3

Q ss_pred             cCCCCCcEEEcCCCccccCCcccccCCCCCcEEecccccc
Q 040699          454 GDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI  493 (689)
Q Consensus       454 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  493 (689)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|.+
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i   55 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL   55 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccc
Confidence            33444444444444443 2223333344444444444433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=120.29  Aligned_cols=112  Identities=14%  Similarity=0.086  Sum_probs=89.3

Q ss_pred             CCCcEEEcCCCccccCCcccccCCCCCcEEeccccc-cccccccCCCcccCCCchhhccccccceEeccCcccccCCccc
Q 040699          457 TRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPST  535 (689)
Q Consensus       457 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  535 (689)
                      ...+.++..++.+. ..|..+..+++|++|++++|+ ++           ...+..|.++++|+.|++++|+|+++.+.+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-----------~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-----------HLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-----------EECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-----------ccCchhhccccccCcceeeccccCCccccc
Confidence            34566888888877 456778888899999987664 54           245567889999999999999999888888


Q ss_pred             ccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCC
Q 040699          536 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       536 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      |.++++|++|+|++|+|+...++.+.. .+|+.|++++|++.|.+.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGG
T ss_pred             ccccccccceeccCCCCcccChhhhcc-ccccccccCCCcccCCch
Confidence            999999999999999999665555554 479999999999987653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=6.1e-13  Score=110.28  Aligned_cols=100  Identities=23%  Similarity=0.287  Sum_probs=41.7

Q ss_pred             EEEccCCcCCccCcccccCCCCccEEeccCCcccccccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCc
Q 040699          389 SLVLSNNSLKGHMFSRNFNLANLMSLQLEGNHFIGEISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNH  468 (689)
Q Consensus       389 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  468 (689)
                      .|++++|+++...  .+..+++|++|++++|+++. +|..+..+++|++|++++|.++. ++ .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            3444444444321  23344444444444444432 23334444444444444444442 22 24444444444444444


Q ss_pred             cccCC-cccccCCCCCcEEecccccc
Q 040699          469 LEGPI-PVEFCQLDLLQILDISDNNI  493 (689)
Q Consensus       469 l~~~~-~~~~~~l~~L~~L~l~~n~~  493 (689)
                      ++... ...+..+++|++|++++|++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            44322 12334444444444444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=8e-14  Score=139.75  Aligned_cols=141  Identities=16%  Similarity=0.206  Sum_probs=88.1

Q ss_pred             CCCCCCEEECCCCCCCCc----CChhhcCCCCCcEEEcCCCccccC-----CcccccCCCCCcEEeccccccccccccCC
Q 040699          431 KCSSLEGLFLNNNNLSGK----IPRWLGDLTRLQYIIMPNNHLEGP-----IPVEFCQLDLLQILDISDNNISGRLDLSC  501 (689)
Q Consensus       431 ~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~l~ls~  501 (689)
                      ..+.|+.+++++|.+...    +...+...+.|++|++++|.+...     ....+..+++|+.|++++|.++..     
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~-----  230 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-----  230 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-----
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccc-----
Confidence            456677777777766522    223345566777777777776531     233456677788888887776421     


Q ss_pred             CcccCCCchhhccccccceEeccCcccccCCc----ccccC--CCCCCEEeCcCCcCCCC----Cchhcc-CCCCCCEEe
Q 040699          502 NKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIP----STFSN--LKHVESLDLSNNKLNGK----IPHQLV-ELKTLEVFS  570 (689)
Q Consensus       502 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~--l~~L~~L~L~~N~l~~~----~~~~~~-~l~~L~~L~  570 (689)
                        -...+...+..+++|++|++++|.++....    ..+..  .+.|++|++++|+|+..    +...+. ..++|+.|+
T Consensus       231 --g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         231 --GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             --HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             --ccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence              000123456677888888888888764322    22332  36788999999988642    223332 467899999


Q ss_pred             ccCCcCcC
Q 040699          571 VAYNNLSG  578 (689)
Q Consensus       571 l~~N~l~~  578 (689)
                      +++|.+..
T Consensus       309 l~~N~~~~  316 (344)
T d2ca6a1         309 LNGNRFSE  316 (344)
T ss_dssp             CTTSBSCT
T ss_pred             CCCCcCCC
Confidence            99998864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-12  Score=114.04  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=63.5

Q ss_pred             CCchhhccccccceEeccCc-ccccCCcccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCCccc
Q 040699          507 PIPPKIGNLTRIQTLNLSHN-DLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWEA  585 (689)
Q Consensus       507 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  585 (689)
                      ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.|.+|..+++|+.|+|++|.++...+..+.
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  101 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc
Confidence            44555666677777777655 36656666677777777777777777766666677777777777777777644444332


Q ss_pred             cccccCcccccCCcCCCCCC
Q 040699          586 QFATFNENSYEGNTFLCGLP  605 (689)
Q Consensus       586 ~~~~~~~~~~~~n~~~c~~~  605 (689)
                       ...+..+++.+|||.|+|.
T Consensus       102 -~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3         102 -GLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             -SCCCCEEECCSSCCCCCGG
T ss_pred             -cccccccccCCCcccCCch
Confidence             2356666777777777653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=5e-13  Score=133.83  Aligned_cols=189  Identities=21%  Similarity=0.215  Sum_probs=99.9

Q ss_pred             CCCceEEEccCCcCCcc----ccccccCCCCCcEEeccCCcccccchhh------------hhcCCCCCCEEEccCCcCC
Q 040699          335 LPSLHVFNISMNALDGS----IPSSFGNMNFLRILDLSNNQLTGEIPEH------------LAVGCVNLESLVLSNNSLK  398 (689)
Q Consensus       335 ~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~l~~n~l~  398 (689)
                      +++|+.|++++|.+...    +...+...++|++|++++|.+.......            .....+.|+.+.+++|.+.
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            34555555555554432    1223334555666666655543111100            1123456666666666655


Q ss_pred             ccCccc----ccCCCCccEEeccCCccccc-----ccccccCCCCCCEEECCCCCCCCc----CChhhcCCCCCcEEEcC
Q 040699          399 GHMFSR----NFNLANLMSLQLEGNHFIGE-----ISQSLSKCSSLEGLFLNNNNLSGK----IPRWLGDLTRLQYIIMP  465 (689)
Q Consensus       399 ~~~~~~----~~~l~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~  465 (689)
                      ......    +...+.|++|++++|.+...     ....+..+++|+.|++++|.++..    +...+..+++|++|+++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            332222    23456677777777665432     233455667777777777766522    23445666777777777


Q ss_pred             CCccccCCccc----ccC--CCCCcEEeccccccccccccCCCcccCCCchhhc-cccccceEeccCccccc
Q 040699          466 NNHLEGPIPVE----FCQ--LDLLQILDISDNNISGRLDLSCNKLIGPIPPKIG-NLTRIQTLNLSHNDLTG  530 (689)
Q Consensus       466 ~n~l~~~~~~~----~~~--l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~  530 (689)
                      +|.+++.....    +..  .+.|++|++++|.++..      .+ ..+...+. .+++|+.|++++|.+..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~------~~-~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD------AV-RTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH------HH-HHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChH------HH-HHHHHHHHccCCCCCEEECCCCcCCC
Confidence            77765432222    222  35677777777776521      00 01122232 45678888888887763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=1.4e-13  Score=125.01  Aligned_cols=130  Identities=25%  Similarity=0.305  Sum_probs=89.0

Q ss_pred             ccccccCCCCCCEEECCCCCCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcc
Q 040699          425 ISQSLSKCSSLEGLFLNNNNLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKL  504 (689)
Q Consensus       425 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l  504 (689)
                      ++..+..+++|++|++++|.|.. ++ .+.++++|++|++++|.++. ++..+..+++|++|++++|.++          
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~----------  106 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA----------  106 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECC----------
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccc----------
Confidence            34567777788888888887773 33 46777788888888887773 4444455567888888888775          


Q ss_pred             cCCCchhhccccccceEeccCcccccCCc-ccccCCCCCCEEeCcCCcCCCCCchh----------ccCCCCCCEEe
Q 040699          505 IGPIPPKIGNLTRIQTLNLSHNDLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQ----------LVELKTLEVFS  570 (689)
Q Consensus       505 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~  570 (689)
                        .+ +.+..+++|+.|++++|+++.... ..+..+++|++|++++|++....+..          +..+++|+.||
T Consensus       107 --~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         107 --SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             --CH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             --cc-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence              22 346777888888888888874322 45777888888888888776433321          45567777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=4e-13  Score=121.90  Aligned_cols=131  Identities=23%  Similarity=0.256  Sum_probs=105.8

Q ss_pred             CCCEEECCCC--CCCCcCChhhcCCCCCcEEEcCCCccccCCcccccCCCCCcEEeccccccccccccCCCcccCCCchh
Q 040699          434 SLEGLFLNNN--NLSGKIPRWLGDLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPK  511 (689)
Q Consensus       434 ~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~  511 (689)
                      ..+.+++.+.  .+. .++..+..+++|++|++++|+++.. + .+..+++|++|++++|.++            .+|..
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~------------~i~~~   88 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK------------KIENL   88 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC------------SCSSH
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc------------ccccc
Confidence            4555666543  233 5667889999999999999999854 3 5889999999999999987            56666


Q ss_pred             hccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCCCCCc-hhccCCCCCCEEeccCCcCcCCCC
Q 040699          512 IGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIP  581 (689)
Q Consensus       512 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~  581 (689)
                      ...+++|+.|++++|+++..  +.+..+++|++|++++|+++.... ..+..+++|+.|++++|++....+
T Consensus        89 ~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_          89 DAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            66678899999999999854  347889999999999999986432 568899999999999999875544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.6e-08  Score=87.67  Aligned_cols=88  Identities=19%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             cccccCCCCCcEEeccccccccccccCCCcccCCCchhhccccccceEeccCcccccCCcccccCCCCCCEEeCcCCcCC
Q 040699          474 PVEFCQLDLLQILDISDNNISGRLDLSCNKLIGPIPPKIGNLTRIQTLNLSHNDLTGSIPSTFSNLKHVESLDLSNNKLN  553 (689)
Q Consensus       474 ~~~~~~l~~L~~L~l~~n~~~~~l~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  553 (689)
                      +..+..+++|++|++++|+++.        +. .++..+..+++|+.|++++|.++...+..+.....|+.|++++|++.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~--------l~-~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYR--------LD-DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCC--------CS-GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccC--------Cc-hhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3344556677777777776652        00 12234556677777777777776544333334456777777777776


Q ss_pred             CCCch-------hccCCCCCCEEe
Q 040699          554 GKIPH-------QLVELKTLEVFS  570 (689)
Q Consensus       554 ~~~~~-------~~~~l~~L~~L~  570 (689)
                      .....       .+..+|+|+.||
T Consensus       129 ~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         129 DTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcccchhHHHHHHHHCCCCCEEC
Confidence            44332       244566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=6.1e-08  Score=83.87  Aligned_cols=75  Identities=24%  Similarity=0.236  Sum_probs=59.4

Q ss_pred             CchhhccccccceEeccCcccccCC--cccccCCCCCCEEeCcCCcCCCCCchhccCCCCCCEEeccCCcCcCCCCC
Q 040699          508 IPPKIGNLTRIQTLNLSHNDLTGSI--PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  582 (689)
Q Consensus       508 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  582 (689)
                      ++..+..+++|++|+|++|+++...  +..+..+++|+.|+|++|.|+...+-.+.....|+.+++++|++.+...+
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            3445567899999999999998653  34577899999999999999976554444556799999999999876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=1.4e-05  Score=68.84  Aligned_cols=91  Identities=13%  Similarity=0.084  Sum_probs=50.0

Q ss_pred             CCCCCCEEeCCCC-CCCC--ccccchhhcCCCCCCEEECCCCCCCCcchhHHhh---cCCCCcEEECCCCcCCcccC---
Q 040699            3 SFPSLNTLYLLFN-NFTD--IATTAQELHSFTNLEYLSLDFSSLHISLLQSIAS---IFPSLKNLSMSGCEVNGLVR---   73 (689)
Q Consensus         3 ~l~~L~~L~Ls~n-~i~~--~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~---   73 (689)
                      +.++|++|+|+++ .+..  +..+...+...++|++|+|++|.+.......++.   ..+.|++|++++|.+.+...   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4566777777653 3433  1123445666667777777777766543332221   24667777777776653210   


Q ss_pred             CCCCCCCCCCCeeeCCCCcc
Q 040699           74 GQGFPHFKSLEHLDMSSTRI   93 (689)
Q Consensus        74 ~~~~~~l~~L~~L~L~~~~~   93 (689)
                      ...+...+.|++|++++|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            11345556666666666644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.66  E-value=1.7e-05  Score=68.34  Aligned_cols=41  Identities=17%  Similarity=0.072  Sum_probs=20.0

Q ss_pred             ccCCCCCCEEECCCCCCCCc----CChhhcCCCCCcEEEcCCCcc
Q 040699          429 LSKCSSLEGLFLNNNNLSGK----IPRWLGDLTRLQYIIMPNNHL  469 (689)
Q Consensus       429 ~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l  469 (689)
                      +...++|++|++++|.++..    +..++...++|++|++++|++
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            34445566666666655521    112344445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=0.00011  Score=63.10  Aligned_cols=65  Identities=18%  Similarity=0.165  Sum_probs=26.9

Q ss_pred             CCCCCEEeCCC-CCCCC--ccccchhhcCCCCCCEEECCCCCCCCcchhHHhh---cCCCCcEEECCCCcC
Q 040699            4 FPSLNTLYLLF-NNFTD--IATTAQELHSFTNLEYLSLDFSSLHISLLQSIAS---IFPSLKNLSMSGCEV   68 (689)
Q Consensus         4 l~~L~~L~Ls~-n~i~~--~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~---~l~~L~~L~Ls~n~l   68 (689)
                      .+.|++|+|++ +.++.  +..+...+...++|++|++++|.++......++.   ..+.++.+++++|.+
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            34555555554 22322  1112333444455555555555544433332211   134444555544443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=4.8e-05  Score=65.43  Aligned_cols=68  Identities=21%  Similarity=0.207  Sum_probs=43.9

Q ss_pred             hhcCCCCCCEEECCC-CCCCCcchhHHhh---cCCCCcEEECCCCcCCcccCC---CCCCCCCCCCeeeCCCCcc
Q 040699           26 ELHSFTNLEYLSLDF-SSLHISLLQSIAS---IFPSLKNLSMSGCEVNGLVRG---QGFPHFKSLEHLDMSSTRI   93 (689)
Q Consensus        26 ~~~~~~~L~~L~L~~-~~i~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~~~~   93 (689)
                      ...+.+.|++|+|++ +.++...+..++.   ..++|++|++++|.+......   ..+...+.++.++++++.+
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            346678888888886 4577665554443   267788888888876532111   1344557777777777766