Citrus Sinensis ID: 040700

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
MFSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISPS
cHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEcccccEEEEccccccccccccccccccccccccccccccccHHHHHcccccEEEEEEEEEEccccEEEccccccccEEEEccccccccEEEEEEEEEEEEcccEEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccEEEEEEEEEEEcccHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
cEEEEEEEEEHcccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEccccHHHEEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEccccEEEEEccccccEEEcccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHccHHHHEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHccccccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHcccHEHcHHHHEHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccHEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccc
MFSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNlrfatpttlkPLVIVAAKHESHVQATVICSKKFGLQIRirsgghdydglsyvsnvpFVILDMFNlrsinisltdetawvqagataskihgfpagvcptlgvgghfsgggygnmMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINavngskegekTVKVSFVAMFLGQTEKLLSLMKQsfpelgiqkkdcfeMRWVESVLFwfdqpigtplevllnripksqvslkrksdyvqepipktgLESIWKLMIELGEVgmqwnpyggimseipatetpfphragnifkiqysanwnqpgieVTNRYLNLTRTFYEAmtpyvsknpreaflnyrdidigsntngtyeegKIYGIKYFKNNFDRLVRVktsvdpdnfftyeqsipisps
MFSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINavngskegekTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKsqvslkrksdyvqepipktglESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNyrdidigsntngtyeeGKIYGIKYFKNNFDRLVRVKTsvdpdnfftyeqsipisps
MfslfsiifftfsaansasVEENFLQCLsmqsqssiaiseaiYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLgvgghfsgggygNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISPS
**SLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLK**SDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYE********
MFSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIP****
MFSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISPS
MFSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSI*****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGATASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query512 2.2.26 [Sep-21-2011]
Q9SVG4570 Reticuline oxidase-like p no no 0.953 0.856 0.522 1e-142
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.980 0.921 0.465 1e-125
A6P6V9544 Cannabidiolic acid syntha N/A no 0.955 0.898 0.472 1e-124
A6P6W0545 Cannabidiolic acid syntha N/A no 0.982 0.922 0.460 1e-123
A6P6W1545 Cannabidiolic acid syntha N/A no 0.982 0.922 0.462 1e-123
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.974 0.915 0.464 1e-119
P93479535 Reticuline oxidase OS=Pap N/A no 0.960 0.919 0.385 3e-86
P30986538 Reticuline oxidase OS=Esc N/A no 0.958 0.912 0.381 7e-84
O06997447 Uncharacterized FAD-linke yes no 0.775 0.888 0.293 9e-23
Q796Y5451 Uncharacterized FAD-linke no no 0.757 0.860 0.242 4e-17
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function desciption
 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/507 (52%), Positives = 365/507 (71%), Gaps = 19/507 (3%)

Query: 17  SASVEENFLQCLSMQSQSSIA-ISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIV 75
           S SV  +FL+C S +++S  + I++ +++ +N +FSSVL++Y+RN RF T +TLKP +I+
Sbjct: 32  SNSVYNSFLKCFSDKTKSPQSQITDNVFSQTNPAFSSVLRAYIRNARFNTSSTLKPTIII 91

Query: 76  AAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDE 135
             + ESHV A V CSK     ++IRSGGHDYDGLSY+S+ PF ILDM N+R +++ +   
Sbjct: 92  TPRSESHVSAAVTCSKTLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIASN 151

Query: 136 TAWVQAGAT----------ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIV 185
           +AW+ AGAT           S++HGFPAGVCPT+GVGGH SGGGYGNM+RKFGLSVD + 
Sbjct: 152 SAWISAGATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVE 211

Query: 186 DAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLE 245
           DA+IVDV GR+LDRK+MGEDLFWAI GGG  S+ V+L +K+KLV VP  VTVFRV + ++
Sbjct: 212 DAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMD 271

Query: 246 QGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLM 305
            GA D+V KWQ V   K D +LF+R+ I  V  +++  KTV+ S VA+FLG+ +++++L+
Sbjct: 272 SGAVDMVHKWQSVGP-KTDPNLFMRMLIQPV--TRKKVKTVRASVVALFLGRADEVVALL 328

Query: 306 KQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLE--VLLNRIPKSQVSLKRKSDYVQE 363
            + FPELG++K++C EM W +S L+W ++   T ++  V L+R   +    KRKSDYV  
Sbjct: 329 SKEFPELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVAT 388

Query: 364 PIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQP 423
            IPK G+ES++K MIELG++G+ +NPYGG M+E+     PFPHR   +FKIQYS NW + 
Sbjct: 389 AIPKKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKEN 447

Query: 424 GIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNG--TYEEGKIYGIKYF 481
             E+   YLN  +  Y  MT +VSKNPR ++ NYRD+DIG N +G  +Y+EG++YG KYF
Sbjct: 448 SAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYF 507

Query: 482 KNNFDRLVRVKTSVDPDNFFTYEQSIP 508
             NFDRLV++KT+VDP NFF  EQSIP
Sbjct: 508 GENFDRLVKIKTAVDPGNFFRNEQSIP 534

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 1EC: .EC: -EC: .EC: -
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
224115642534 predicted protein [Populus trichocarpa] 0.998 0.956 0.723 0.0
255564317533 Reticuline oxidase precursor, putative [ 0.982 0.943 0.717 0.0
225444147531 PREDICTED: reticuline oxidase-like prote 0.968 0.934 0.660 0.0
147845848531 hypothetical protein VITISV_015121 [Viti 0.968 0.934 0.660 0.0
147838818531 hypothetical protein VITISV_000229 [Viti 0.968 0.934 0.660 0.0
225444157531 PREDICTED: reticuline oxidase-like prote 0.968 0.934 0.658 0.0
359483738552 PREDICTED: reticuline oxidase-like prote 0.968 0.898 0.654 0.0
359483736537 PREDICTED: reticuline oxidase-like prote 0.968 0.923 0.650 0.0
255564311511 Reticuline oxidase precursor, putative [ 0.960 0.962 0.626 0.0
224056755526 predicted protein [Populus trichocarpa] 0.949 0.923 0.649 0.0
>gi|224115642|ref|XP_002317086.1| predicted protein [Populus trichocarpa] gi|222860151|gb|EEE97698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/524 (72%), Positives = 433/524 (82%), Gaps = 13/524 (2%)

Query: 2   FSLFSIIFFTFSAANSASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNL 61
           F  FS++  + S  NS ++ +NFLQCL+  SQ +  IS+AI+T  N SF++VLQSY RNL
Sbjct: 5   FVFFSVLLISVSLPNSIALPDNFLQCLTENSQPTNPISDAIHTPDNPSFTTVLQSYARNL 64

Query: 62  RFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILD 121
           RF T +T KPL I+AAKHESHVQAT+ICSKK GLQIRIRSGGHDYDGLSYVS+V F+ILD
Sbjct: 65  RFLTLSTPKPLAIIAAKHESHVQATIICSKKLGLQIRIRSGGHDYDGLSYVSDVAFIILD 124

Query: 122 MFNLRSINISLTDETAWVQAGAT----------ASKIHGFPAGVCPTLGVGGHFSGGGYG 171
           MFNLRSINI + DE+AWVQAGAT           S +HGFPAGVCPTLGVGGHFSGGGYG
Sbjct: 125 MFNLRSINIDIEDESAWVQAGATLGEVYYRIAEKSNVHGFPAGVCPTLGVGGHFSGGGYG 184

Query: 172 NMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQV 231
           NMMRK+GLSVDNIVDAQI+DV+GRILDRKSMGEDLFWAIRGGGAASF VILSWKIKLV V
Sbjct: 185 NMMRKYGLSVDNIVDAQIIDVRGRILDRKSMGEDLFWAIRGGGAASFGVILSWKIKLVPV 244

Query: 232 PETVTVFRVVKTLEQGATDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFV 291
           PE VTVF V +TLE+G +DL  KWQQ+AADKLD DLFIRL +  VNG++EG+KT++ SFV
Sbjct: 245 PEIVTVFSVDRTLEEGVSDLAWKWQQIAADKLDNDLFIRLMLQPVNGTQEGKKTIQASFV 304

Query: 292 AMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWVESVLFWFDQPIGTPLEVLLNRIPKSQ 351
           AMFLG+ E+LLS+M +SFPELG+Q KDC EMRW+ESVL W   P GTP+EVLL+RIPK  
Sbjct: 305 AMFLGRAERLLSVMNESFPELGLQAKDCAEMRWIESVLSWVGMPKGTPIEVLLDRIPKGV 364

Query: 352 VSLKRKSDYVQEPIPKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNI 411
             LKRKSDYV+EPI K GLESIWK+M E+GEV M WNPYGG MSEI  TET FPHRAGNI
Sbjct: 365 SYLKRKSDYVKEPISKEGLESIWKVMTEVGEVAMLWNPYGGKMSEISETETAFPHRAGNI 424

Query: 412 FKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDID---IGSNTNG 468
           FKIQYS NW Q GI+ TN Y+NLTRT +EAMTPYVSKNPREAFLNYRDID   IGS+ NG
Sbjct: 425 FKIQYSVNWKQEGIDTTNHYVNLTRTLFEAMTPYVSKNPREAFLNYRDIDIGSIGSHGNG 484

Query: 469 TYEEGKIYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISPS 512
           T++E  +YG KYFK+NFDRLV++KT VDPDNFF YEQSIP   S
Sbjct: 485 TFQEASVYGHKYFKDNFDRLVQIKTRVDPDNFFGYEQSIPTQSS 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564317|ref|XP_002523155.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537562|gb|EEF39186.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225444147|ref|XP_002269462.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845848|emb|CAN80091.1| hypothetical protein VITISV_015121 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838818|emb|CAN60572.1| hypothetical protein VITISV_000229 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444157|ref|XP_002270585.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483738|ref|XP_002270181.2| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483736|ref|XP_002267904.2| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564311|ref|XP_002523152.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537559|gb|EEF39183.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224056755|ref|XP_002299007.1| predicted protein [Populus trichocarpa] gi|224056757|ref|XP_002299008.1| predicted protein [Populus trichocarpa] gi|222846265|gb|EEE83812.1| predicted protein [Populus trichocarpa] gi|222846266|gb|EEE83813.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query512
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.947 0.920 0.601 3.1e-161
TAIR|locus:2204614531 AT1G30710 [Arabidopsis thalian 0.949 0.915 0.576 9.2e-155
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.947 0.920 0.542 9.6e-144
TAIR|locus:2204624527 AT1G30720 [Arabidopsis thalian 0.947 0.920 0.526 5.5e-141
TAIR|locus:2121509528 AT4G20800 [Arabidopsis thalian 0.943 0.914 0.540 4.4e-139
TAIR|locus:2197900552 AT1G26410 [Arabidopsis thalian 0.939 0.871 0.539 1.2e-138
TAIR|locus:2198000529 AT1G26420 [Arabidopsis thalian 0.943 0.913 0.532 2.4e-138
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.941 0.909 0.525 4e-138
TAIR|locus:2204634526 AT1G30730 [Arabidopsis thalian 0.951 0.925 0.51 1.7e-137
TAIR|locus:2121544539 AT4G20840 [Arabidopsis thalian 0.945 0.897 0.512 5.2e-136
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
 Identities = 305/507 (60%), Positives = 371/507 (73%)

Query:    20 VEENFLQCLXXXXXXXXXXXXXXYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKH 79
             ++++F QC+              YT  N +F ++L +YVRNLR+   TT KP+ IVAA H
Sbjct:    28 LKDSFTQCVTVFKPSVPIQNFT-YTQQNPNFLTILNNYVRNLRYFNGTTRKPVAIVAAAH 86

Query:    80 ESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWV 139
              +H+QAT+ C+KK GLQ+RIRSGGHDYDG+SY+S V FV+LDMFNLR+I I    +TAWV
Sbjct:    87 FTHIQATINCAKKLGLQLRIRSGGHDYDGMSYLSTVDFVVLDMFNLRAIEIDPKLDTAWV 146

Query:   140 QAGATASKIH-----------GFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQ 188
             Q+GAT  +I+           GFPAG+CP L            NMMRK+GLS+DNI+DA+
Sbjct:   147 QSGATLGEIYYNVANKSNNLRGFPAGICPGLGAGGHFSGGGYGNMMRKYGLSIDNIIDAK 206

Query:   189 IVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLEQGA 248
             IVD   R+LDR SMGEDLFWA+RGGGAASFCV+L+WKIKLV VPE VTVF V     +G 
Sbjct:   207 IVDANARVLDRSSMGEDLFWALRGGGAASFCVVLAWKIKLVPVPEKVTVFNVETIGNRGV 266

Query:   249 --TDLVAKWQQVAADKLDQDLFIRLFINAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMK 306
               TDL AKWQ++A DK+D DLFIRL +++ N      KTVK SF+ M+LG +EKLL +M 
Sbjct:   267 IPTDLAAKWQEIA-DKIDNDLFIRLTLSSSN------KTVKASFMGMYLGNSEKLLEIMN 319

Query:   307 QSFPELGIQKKDCFEMRWVESVLFWFDQPIGT-PLEVLLNRIPKSQVSLKRKSDYVQEPI 365
               FPELG+ K +C EM+W+ESVLFW   P GT P  V+LNRIP+ Q+ LKRKSDYVQ+PI
Sbjct:   320 AKFPELGLNKTECIEMKWIESVLFWLSIPPGTAPTSVMLNRIPQKQIYLKRKSDYVQKPI 379

Query:   366 PKTGLESIWKLMIELGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWNQPGI 425
              K GLESI+K++ E   V M WNPYGG MSEIPATET FPHRAGN+FKIQYS+NW  PG 
Sbjct:   380 SKPGLESIFKILSENENVSMAWNPYGGRMSEIPATETAFPHRAGNMFKIQYSSNWFVPGE 439

Query:   426 EVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGTYEEGKIYGIKYFKNNF 485
             E  +  L+ T   +EAM+PYVSKNPREAFLNYRDIDIG N N TYEEGK+YG+KYFKNNF
Sbjct:   440 EAASDCLSQTERVFEAMSPYVSKNPREAFLNYRDIDIGKNLNSTYEEGKVYGVKYFKNNF 499

Query:   486 DRLVRVKTSVDPDNFFTYEQSIPISPS 512
             +RLV+VKT VDPDN F YEQSIP+  S
Sbjct:   500 ERLVQVKTRVDPDNIFRYEQSIPVHVS 526
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2204614 AT1G30710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204624 AT1G30720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121509 AT4G20800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197900 AT1G26410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198000 AT1G26420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204634 AT1G30730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121544 AT4G20840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XI001367
hypothetical protein (534 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 5e-23
pfam0803145 pfam08031, BBE, Berberine and berberine like 5e-17
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 2e-15
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score = 94.6 bits (236), Expect = 5e-23
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 71  PLVIVAAKHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNL-RSIN 129
           P  +V  + E  V A V  + + GL + +R GG    G + ++    V+LD+  L   + 
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 130 ISLTDETAWVQAGATASKIH----------GFPAGVCPTLGVGGHFSGGGYGNMMRKFGL 179
           I   D TA V+AG T   +           G   G      VGG  +  G G    ++GL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 180 SVDNIVDAQIVDVQGRILD 198
           + DN++  ++V   G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 512
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.97
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.97
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.97
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.96
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.96
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.96
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.95
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.94
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.94
KOG1231505 consensus Proteins containing the FAD binding doma 99.94
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.91
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
PRK11183564 D-lactate dehydrogenase; Provisional 99.82
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.8
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.79
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.79
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.78
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.78
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.68
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.68
KOG1232511 consensus Proteins containing the FAD binding doma 99.66
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.65
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.59
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.49
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.48
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.47
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.41
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.32
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.18
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.69
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 92.38
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.87
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 88.45
PRK09799258 putative oxidoreductase; Provisional 87.28
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 86.51
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 84.19
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 83.23
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.6e-37  Score=327.46  Aligned_cols=195  Identities=22%  Similarity=0.286  Sum_probs=166.2

Q ss_pred             cceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCCHHHHHHHHHHHH--hcCCeEEEeecccCCCCCCcccCCC
Q 040700           39 SEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSK--KFGLQIRIRSGGHDYDGLSYVSNVP  116 (512)
Q Consensus        39 ~~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~v~ggGh~~~g~s~~~~~~  116 (512)
                      .+.+.+ ++..|+.+.      ..|+......|.+|++|+|++||+++|++|+  ++++++++||+|||+.|.+...+  
T Consensus        40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--  110 (525)
T PLN02441         40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--  110 (525)
T ss_pred             CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence            455543 455666553      2477777789999999999999999999997  67999999999999998887654  


Q ss_pred             eEEEEecCCcc-------EEEeCCCCeEEEecCcc--------cccccccC-ccCCCCccccccccCCCCCCccccccch
Q 040700          117 FVILDMFNLRS-------INISLTDETAWVQAGAT--------ASKIHGFP-AGVCPTLGVGGHFSGGGYGNMMRKFGLS  180 (512)
Q Consensus       117 g~vIdl~~l~~-------i~~d~~~~~v~v~~G~~--------~~~g~~~~-~G~~~~vgvgG~~~gGg~g~~s~~~G~~  180 (512)
                      |++|||++||+       +++|.+..+|+|++|++        .++|++.+ .+.+..+++||.+.+||+|..+.+||..
T Consensus       111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~  190 (525)
T PLN02441        111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQ  190 (525)
T ss_pred             eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcH
Confidence            89999999999       36788889999999998        55687644 3555678899999999999999999999


Q ss_pred             hhheeeEEEEecCCeEEe-ccCCCchhHHHHhhcCCCceEEEEEEEEEEEecCceEEEEEEEec
Q 040700          181 VDNIVDAQIVDVQGRILD-RKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKT  243 (512)
Q Consensus       181 ~D~v~~~~vV~a~G~~v~-~~~~~~dLfwa~rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~  243 (512)
                      +|+|+++|||++||++++ ++++|+|||||+|||+ |+|||||+++||++|+|+.+.+..+.+.
T Consensus       191 ~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~  253 (525)
T PLN02441        191 ISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYS  253 (525)
T ss_pred             HHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence            999999999999999996 7788999999999998 8999999999999999987665555554

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-123
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-117
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-108
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 9e-84
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 9e-84
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-83
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-83
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-82
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-82
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-82
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 2e-13
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 6e-12
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 3e-10
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-09
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 4e-09
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 1e-08
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 2e-08
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 5e-07
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/513 (44%), Positives = 317/513 (61%), Gaps = 26/513 (5%)
Query: 22  ENFLQCLXXXXXXXXXXXXXXYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHES 81
           ENFL+C               YT  +  + S+L S ++NLRF + TT KPLVIV   + S
Sbjct: 5   ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 82  HVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQA 141
           H+QAT++CSKK GLQIR RSGGHD +G+SY+S VPFV++D+ N+ SI I +  +TAWV+A
Sbjct: 65  HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 142 GATASKIH----------GFPAGVCPTLXXXXXXXXXXXXNMMRKFGLSVDNIVDAQIVD 191
           GAT  +++           FP G CPT+             +MR +GL+ DNI+DA +V+
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 192 VQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGATD 250
           V G++LDRKSMGEDLFWAIRGGG  +F +I +WKIKLV VP   T+F V K +E  G   
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 251 LVAKWQQVAADKLDQDL-FIRLFI--NAVNGSKEGEKTVKVSFVAMFLGQTEKLLSLMKQ 307
           L  KWQ +A  K D+DL  +  FI  N  +   + + TV   F ++F G  + L+ LM +
Sbjct: 245 LFNKWQNIAY-KYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 303
Query: 308 SFPELGIQKKDCFEMRWVESVLFWFD----QPIGTPLEVLLNRIPKSQVSLKRKSDYVQE 363
           SFPELGI+K DC E  W+++ +F+             E+LL+R    + +   K DYV++
Sbjct: 304 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKK 363
Query: 364 PIPKTGLESIWKLMIE--LGEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYSANWN 421
           PIP+T +  I + + E  +G       PYGGIM EI  +  PFPHRAG ++++ Y+A+W 
Sbjct: 364 PIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 422 QPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNTNGT---YEEGKIYGI 478
           +   E   +++N  R+ Y   TPYVS+NPR A+LNYRD+D+G   + +   Y + +I+G 
Sbjct: 424 KQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGE 481
Query: 479 KYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISP 511
           KYF  NF+RLV+VKT VDP+NFF  EQSIP  P
Sbjct: 482 KYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query512
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-169
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-167
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-163
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-163
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-159
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-158
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-102
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 3e-40
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 8e-33
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 4e-12
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 3e-05
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-04
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 4e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  575 bits (1482), Expect = 0.0
 Identities = 240/518 (46%), Positives = 332/518 (64%), Gaps = 26/518 (5%)

Query: 18  ASVEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAA 77
           A+  ENFL+C S    +++A  + +YT  +  + S+L S ++NLRF + TT KPLVIV  
Sbjct: 1   ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60

Query: 78  KHESHVQATVICSKKFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETA 137
            + SH+QAT++CSKK GLQIR RSGGHD +G+SY+S VPFV++D+ N+ SI I +  +TA
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120

Query: 138 WVQAGAT----------ASKIHGFPAGVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDA 187
           WV+AGAT           ++   FP G CPT+GVGGHFSGGGYG +MR +GL+ DNI+DA
Sbjct: 121 WVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDA 180

Query: 188 QIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLE-Q 246
            +V+V G++LDRKSMGEDLFWAIRGGG  +F +I +WKIKLV VP   T+F V K +E  
Sbjct: 181 HLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH 240

Query: 247 GATDLVAKWQQVAADKLDQDLFIRLFI---NAVNGSKEGEKTVKVSFVAMFLGQTEKLLS 303
           G   L  KWQ + A K D+DL +       N  +   + + TV   F ++F G  + L+ 
Sbjct: 241 GLVKLFNKWQNI-AYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299

Query: 304 LMKQSFPELGIQKKDCFEMRWVESVLFWFDQ----PIGTPLEVLLNRIPKSQVSLKRKSD 359
           LM +SFPELGI+K DC E  W+++ +F+             E+LL+R    + +   K D
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLD 359

Query: 360 YVQEPIPKTGLESIWKLMIEL--GEVGMQWNPYGGIMSEIPATETPFPHRAGNIFKIQYS 417
           YV++PIP+T +  I + + E   G       PYGGIM EI  +  PFPHRAG ++++ Y+
Sbjct: 360 YVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYT 419

Query: 418 ANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIGSNT---NGTYEEGK 474
           A+W +   E   +++N  R+ Y   TPYVS+NPR A+LNYRD+D+G         Y + +
Sbjct: 420 ASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477

Query: 475 IYGIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISPS 512
           I+G KYF  NF+RLV+VKT VDP+NFF  EQSIP  P 
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP 515
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.98
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.97
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.96
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.96
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.96
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.95
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.94
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.94
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.94
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.93
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.88
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.88
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.85
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.85
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.8
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.69
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 97.3
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 95.46
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 95.01
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 91.67
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 87.23
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 82.52
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 82.28
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=2.8e-88  Score=723.73  Aligned_cols=490  Identities=49%  Similarity=0.893  Sum_probs=412.8

Q ss_pred             ccccHHhhhhhccCCCccccceEEcCCCcccHHHHhhcccccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhcCCeEEE
Q 040700           20 VEENFLQCLSMQSQSSIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATVICSKKFGLQIRI   99 (512)
Q Consensus        20 ~~~~~~~c~~~~~~~~~~~~~~v~~p~d~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v   99 (512)
                      ++++|.+||+.....+..+++.|++|+|+.|++++.++.+|.||+.....+|.+||+|+|++||+++|++|+++++|+++
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            46789999999877778899999999999999998888999999998899999999999999999999999999999999


Q ss_pred             eecccCCCCCCcccCCCeEEEEecCCccEEEeCCCCeEEEecCcc--------cc--cccccCccCCCCccccccccCCC
Q 040700          100 RSGGHDYDGLSYVSNVPFVILDMFNLRSINISLTDETAWVQAGAT--------AS--KIHGFPAGVCPTLGVGGHFSGGG  169 (512)
Q Consensus       100 ~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~--------~~--~g~~~~~G~~~~vgvgG~~~gGg  169 (512)
                      ||||||+.+.+.....++++|||++|++|++|+++++++||+|++        .+  .|+.++.|.|++|||||+++|||
T Consensus        83 rggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg  162 (518)
T 3vte_A           83 RSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGG  162 (518)
T ss_dssp             ESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCC
T ss_pred             ECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCC
Confidence            999999998874322248999999999999999999999999998        23  37889999999999999999999


Q ss_pred             CCCccccccchhhheeeEEEEecCCeEEeccCCCchhHHHHhhcCCCceEEEEEEEEEEEecCceEEEEEEEeccc-chH
Q 040700          170 YGNMMRKFGLSVDNIVDAQIVDVQGRILDRKSMGEDLFWAIRGGGAASFCVILSWKIKLVQVPETVTVFRVVKTLE-QGA  248 (512)
Q Consensus       170 ~g~~s~~~G~~~D~v~~~~vV~a~G~~v~~~~~~~dLfwa~rG~g~g~fGvvt~~~~~l~p~~~~~~~~~~~~~~~-~~~  248 (512)
                      +|+++++||+++|+|+++|||++||++++.+.+|+|||||+||||+|+|||||+++||++|.|+.+..|.+.+.++ +++
T Consensus       163 ~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~  242 (518)
T 3vte_A          163 YGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGL  242 (518)
T ss_dssp             CCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHH
T ss_pred             CccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHH
Confidence            9999999999999999999999999999754568999999999855899999999999999998777787777654 557


Q ss_pred             HHHHHHHHHHHhccCCcCceEEEEEeeecCC---CCCCceEEEEEEEEEeCCHHHHHHHHHhhCCcCCCCcccceecchH
Q 040700          249 TDLVAKWQQVAADKLDQDLFIRLFINAVNGS---KEGEKTVKVSFVAMFLGQTEKLLSLMKQSFPELGIQKKDCFEMRWV  325 (512)
Q Consensus       249 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (512)
                      .+++.+|+++. +++|+++++.+.+...++.   ..+...+.+.+.++|.|+.+++.++|++.|++++.....+.+++|.
T Consensus       243 ~~~l~~~~~~~-~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~  321 (518)
T 3vte_A          243 VKLFNKWQNIA-YKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI  321 (518)
T ss_dssp             HHHHHHHHHHG-GGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHH
T ss_pred             HHHHHHHHHHH-HcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchh
Confidence            88999999999 8999999998887754321   1122234677889999999999999888787887766778899999


Q ss_pred             HHHHhhcCCCCC-Cc---hhhhccCCCCCCccceeccccccCCCCHhHHHHHHHHHHHc--CceEEEEeecCcccCCCCC
Q 040700          326 ESVLFWFDQPIG-TP---LEVLLNRIPKSQVSLKRKSDYVQEPIPKTGLESIWKLMIEL--GEVGMQWNPYGGIMSEIPA  399 (512)
Q Consensus       326 ~~~~~~~~~~~~-~~---~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~--~~~~i~~~~~GGav~~v~~  399 (512)
                      +.+.++..++.+ .+   .+.+.++......+||.||.|+.+++++++|+.+++.+.+.  +.+.+.++++||++++++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~  401 (518)
T 3vte_A          322 DTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISE  401 (518)
T ss_dssp             HHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCT
T ss_pred             hhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCC
Confidence            988887655433 33   45555664444557789999998889999999999988763  3577899999999999999


Q ss_pred             CCCCCcccCCceeEEEEeeccCCCChhhhHHHHHHHHHHHHhhcccccCCCCccccccCCccCC-CC-CCC-Cccccchh
Q 040700          400 TETPFPHRAGNIFKIQYSANWNQPGIEVTNRYLNLTRTFYEAMTPYVSKNPREAFLNYRDIDIG-SN-TNG-TYEEGKIY  476 (512)
Q Consensus       400 ~~tAfp~R~~~~~~~~~~~~W~~~~~~~~~~~~~w~~~~~~~l~p~~~~~~~g~Y~Ny~d~~l~-~~-~~~-~~~~~~~w  476 (512)
                      ++|||+||+++.|.+++.+.|.++  ++++++++|++++++.|.|+.++.+.|+|+||.|.+++ .+ ..+ +++.+..|
T Consensus       402 ~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w  479 (518)
T 3vte_A          402 SAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW  479 (518)
T ss_dssp             TSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHH
T ss_pred             CCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhH
Confidence            999999998558999999999765  45678899999999999999655567999999998876 21 111 12234579


Q ss_pred             hhhcccccHHHHHHhhhccCCCCCCcCCCCCCCCCC
Q 040700          477 GIKYFKNNFDRLVRVKTSVDPDNFFTYEQSIPISPS  512 (512)
Q Consensus       477 ~~~yyG~ny~RL~~iK~kyDP~nvF~~~qsI~p~~~  512 (512)
                      ++.|||+||+||++||+||||+|+|+++|||+|+++
T Consensus       480 ~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            999999999999999999999999999999999764
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 512
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-15
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-10
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 72.6 bits (177), Expect = 2e-15
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 25/212 (11%)

Query: 35  SIAISEAIYTSSNASFSSVLQSYVRNLRFATPTTLKPLVIVAAKHESHVQATV-IC--SK 91
           ++A+   + T SNA       +   +  F   T+  P  ++       + A +     + 
Sbjct: 1   ALALDGKLRTDSNA-----TAAASTD--FGNITSALPAAVLYPSSTGDLVALLSAANSTP 53

Query: 92  KFGLQIRIRSGGHDYDGLSYVSNVPFVILDMFN----LRSINISLTDETAWVQAGATASK 147
            +   I  R  GH   G ++      V +           IN+S                
Sbjct: 54  GWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWID 113

Query: 148 IHGFPAGVCPTLGVGGHFSGGGYGNMMRKFG---------LSVDNIVDAQIVDVQGRILD 198
           +                +     G  +   G           + N+++  ++   G ++ 
Sbjct: 114 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 173

Query: 199 -RKSMGEDLFWAIRGGGAASFCVILSWKIKLV 229
             K +  DLF A+ GG    F VI   +I + 
Sbjct: 174 CSKQLNADLFDAVLGGL-GQFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query512
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.96
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.95
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.94
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.78
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.75
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.63
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 89.18
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 83.46
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 82.7
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 81.8
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 80.95
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=2.1e-35  Score=278.46  Aligned_cols=169  Identities=20%  Similarity=0.294  Sum_probs=152.0

Q ss_pred             ccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhc---CCeEEEeecccCCCCCCcccCCCeEEEEecCCccE------EE
Q 040700           60 NLRFATPTTLKPLVIVAAKHESHVQATVICSKKF---GLQIRIRSGGHDYDGLSYVSNVPFVILDMFNLRSI------NI  130 (512)
Q Consensus        60 n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~---~~~~~v~ggGh~~~g~s~~~~~~g~vIdl~~l~~i------~~  130 (512)
                      ...|+......|.+|++|+|++||+++|++|+++   ++|+++||+||++.+.+...+  +++|||++||+|      ++
T Consensus        19 ~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~i   96 (206)
T d1w1oa2          19 STDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINV   96 (206)
T ss_dssp             SCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEE
T ss_pred             EECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEE
Confidence            3456666677999999999999999999999997   699999999999998887654  899999999985      68


Q ss_pred             eCCCCeEEEecCcc--------cccccccCc-cCCCCccccccccCCCCCCccccccchhhheeeEEEEecCCeEEe-cc
Q 040700          131 SLTDETAWVQAGAT--------ASKIHGFPA-GVCPTLGVGGHFSGGGYGNMMRKFGLSVDNIVDAQIVDVQGRILD-RK  200 (512)
Q Consensus       131 d~~~~~v~v~~G~~--------~~~g~~~~~-G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~~vV~a~G~~v~-~~  200 (512)
                      |++..+++||+|++        .++|+.++. +.+..+++||++++||+|..+++||+.+|+|+++|||++||++++ ++
T Consensus        97 d~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~  176 (206)
T d1w1oa2          97 SADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSK  176 (206)
T ss_dssp             CTTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEES
T ss_pred             ecCCCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECC
Confidence            99999999999998        678887653 555677899999999999999999999999999999999999996 67


Q ss_pred             CCCchhHHHHhhcCCCceEEEEEEEEEEEec
Q 040700          201 SMGEDLFWAIRGGGAASFCVILSWKIKLVQV  231 (512)
Q Consensus       201 ~~~~dLfwa~rG~g~g~fGvvt~~~~~l~p~  231 (512)
                      .+|+||||++||++ |+|||||+++||++|+
T Consensus       177 ~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         177 QLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            78999999999998 8999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure