Citrus Sinensis ID: 040712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV
Secondary Structure (PSIPRED)
ccccccEEEEccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEcccccccEEEEEccccccEEEEEEcccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccEEEEEEEEEEEEccccccccccEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
kkvshnvecegdtlhCSFVvvkadnpwhysdegveltvtgpsdervrdfdrrstaTFEFVAYKKGLYKfcftnkspyhetpdfdihVAHYayhdqhakdehinPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDrkqglsrv
Flexible Loop (DISEMBL)
kkvshnvecegdtlhCSFVVVKAdnpwhysdegveltvtgpsdervrdfdrrstatfefvaykkgLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKrlfdrkqglsrv
Low Complexity Region (SEG)
KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV
Disordered region (IsUnstruct)
*******ECEGDTLHCSFVVVKADNPWHYSDEGVELTVTG*****VRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFD********
Disordered Region (DISOPRED)
*KVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAY***********PILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLS**
Disordered Region (DISEMBL)
*********EGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV
Disordered Region (DISPRO)
KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQ*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9S7M9	208	Transmembrane emp24 domai	yes	no	0.983	0.846	0.607	5e-65
Q9LIL4	214	Transmembrane emp24 domai	no	no	0.949	0.794	0.376	1e-24
Q9R0Q3	201	Transmembrane emp24 domai	yes	no	0.782	0.696	0.236	7e-10
P49020	196	Transmembrane emp24 domai	yes	no	0.782	0.714	0.236	7e-10
Q63524	201	Transmembrane emp24 domai	yes	no	0.782	0.696	0.236	7e-10
Q15363	201	Transmembrane emp24 domai	yes	no	0.782	0.696	0.236	7e-10
Q769F9	205	Transmembrane emp24 domai	yes	no	0.798	0.697	0.248	2e-08
O17528	203	Suppressor/enhancer of li	yes	no	0.765	0.674	0.262	6e-08
A7SXK3	203	Transmembrane emp24 domai	N/A	no	0.782	0.689	0.187	3e-07
Q9P7I9	199	Endosomal protein P24B OS	yes	no	0.804	0.723	0.227	1e-06

>sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana GN=At3g07680 PE=1 SV=1

 Score =  246 bits (629), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 147/176 (83%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH  E EGDTLH SFVV+K+D+ WH++++GV+L + GP+ E++ DF  + +A  +FV  K
Sbjct: 33  SHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPTGEQIHDFREQISAKHDFVVQK 92

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
           KG+Y+FCFTNKSPYHET DFD+ + H+AY+DQHAKDEH  P+++QI+KLEEALY+I F+Q
Sbjct: 93  KGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHFTPLMEQISKLEEALYNIQFEQ 152

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN+ MS+RA++KA+  SF LI ASFLQ++LL+RLF+RK G+SRV
Sbjct: 153 HWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQVYLLRRLFERKLGMSRV 208

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24delta5 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 91/170 (53%)

Query: 10  EGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKF 69
           EGDT+  +FVVV  D  W     G++ TVT P+   V+     S   FEF A K G+YKF
Sbjct: 45  EGDTVSGNFVVVDHDIFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKF 104

Query: 70  CFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQ 129
           CF N     ET  F IHV H       AKDEH++P+  +IA+L EAL  +  +Q +  A+
Sbjct: 105 CFHNPYSTPETVSFYIHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKAR 164

Query: 130 TERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
             R    N++  +R I+  +    FL  AS LQ+  +++LF +    +RV
Sbjct: 165 DTRHRHTNESTRKRVIFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9R0Q3|TMED2_MOUSE Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 34  VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
           +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query: 91  AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                   + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct: 116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query: 151 GSFFLITASFLQIHLLKRLFDRKQ 174
            +  L+  +  QI+ LKR F+ ++
Sbjct: 176 EALVLVAMTLGQIYYLKRFFEVRR 199

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing (By similarity). Required for morphogenesis of embryo and placenta.

Mus musculus (taxid: 10090)

>sp|P49020|TMED2_CRIGR Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 34  VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
           +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct: 52  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 110

Query: 91  AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                   + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct: 111 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 170

Query: 151 GSFFLITASFLQIHLLKRLFDRKQ 174
            +  L+  +  QI+ LKR F+ ++
Sbjct: 171 EALVLVAMTLGQIYYLKRFFEVRR 194

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Cricetulus griseus (taxid: 10029)

>sp|Q63524|TMED2_RAT Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 34  VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
           +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query: 91  AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                   + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct: 116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query: 151 GSFFLITASFLQIHLLKRLFDRKQ 174
            +  L+  +  QI+ LKR F+ ++
Sbjct: 176 EALVLVAMTLGQIYYLKRFFEVRR 199

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Rattus norvegicus (taxid: 10116)

>sp|Q15363|TMED2_HUMAN Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 34  VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
           +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query: 91  AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                   + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct: 116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query: 151 GSFFLITASFLQIHLLKRLFDRKQ 174
            +  L+  +  QI+ LKR F+ ++
Sbjct: 176 EALVLVAMTLGQIYYLKRFFEVRR 199

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Homo sapiens (taxid: 9606)

>sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 34  VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNK--SPYHETPDFDIHVAHYA 91
           ++ T+  P    V    R S  T    +   G+Y FCF+NK  S   +T  F + V   +
Sbjct: 61  IDFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESS 120

Query: 92  YHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLG 151
              + AK + + PI   I  L + +  +  +Q++F  +        ++ + R ++ ++  
Sbjct: 121 PIREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFE 180

Query: 152 SFFLITASFLQIHLLKRLFDRKQGL 176
           +F LI  S  QI+ L+R F+ K+ +
Sbjct: 181 AFVLIALSIWQIYYLRRFFEVKRAV 205

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|O17528|TMED2_CAEEL Suppressor/enhancer of lin-12 protein 9 OS=Caenorhabditis elegans GN=sel-9 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 34  VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAHYAYH 93
           +++ +TGP ++ +   +R S+  F F A+  G+Y +CF NK     TP   +        
Sbjct: 55  IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTM-TPKAVMFTVEITEP 113

Query: 94  DQHAKDEHINPILDQIAKLEE-------ALYDIHFQQHWFDAQTERQSIVNKTMSRRAIY 146
            Q A     N      AKLEE       AL  +  +Q + + +      +N+  + R + 
Sbjct: 114 HQQAPGAAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVM 173

Query: 147 KAMLGSFFLITASFLQIHLLKRLFD 171
            A   +F L+  +  QI  LKR F+
Sbjct: 174 WAAFEAFVLVGMTVGQIFYLKRFFE 198

May have a role in the negative regulation of lin-12 and glp-1 transport to the cell surface. May also have a role in a quality control mechanism for endoplasmic reticulum-Golgi transport; the budding of coatomer-coated and other species of coated vesicles, could bind cargo molecules to collect them into budding vesicles.

Caenorhabditis elegans (taxid: 6239)

>sp|A7SXK3|TMED_NEMVE Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/144 (18%), Positives = 67/144 (46%), Gaps = 4/144 (2%)

Query: 34  VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETP---DFDIHVAHY 90
           +++ + GP  + +   +R ++  + F A+  G Y +CF+NK     TP    F + +   
Sbjct: 59  IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTM-TPKVLKFSMDIGEA 117

Query: 91  AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                   +   + + + +++L EA+  +  +Q + + +      +N   + R ++ +  
Sbjct: 118 PKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFF 177

Query: 151 GSFFLITASFLQIHLLKRLFDRKQ 174
            S  L+  +  Q++ LKR F+ ++
Sbjct: 178 ESLVLVAMTLGQVYYLKRFFEVRR 201

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Nematostella vectensis (taxid: 45351)

>sp|Q9P7I9|EMP24_SCHPO Endosomal protein P24B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=emp24 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 1/145 (0%)

Query: 30  SDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPDFDIHVAH 89
            D+ V +++  P+ + +      S A + F     G Y +CF N +   E+ +   +V  
Sbjct: 54  GDQLVSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNVHG 113

Query: 90  YAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAM 149
             Y      D + NP+L ++ +L + +  +  +Q +F A+        ++ + R  + ++
Sbjct: 114 VIYISDEDLDAN-NPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSI 172

Query: 150 LGSFFLITASFLQIHLLKRLFDRKQ 174
           L +  L++    QI  LKRLF+ K+
Sbjct: 173 LQTVILVSVCVFQIFYLKRLFEVKR 197

Constituent of COPII-coated endoplasmic reticulum-derived transport vesicles. Required for efficient transport of a subset of secretory proteins to the Golgi.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
388519235	212	unknown [Lotus japonicus]	0.983	0.830	0.653	9e-66
357495489	214	Transmembrane emp24 domain-containing pr	0.983	0.822	0.653	1e-65
357495491	213	Transmembrane emp24 domain-containing pr	0.983	0.826	0.653	1e-65
449453614	214	PREDICTED: transmembrane emp24 domain-co	0.983	0.822	0.630	3e-65
225447504	214	PREDICTED: uncharacterized protein LOC10	0.983	0.822	0.636	3e-65
356554509	212	PREDICTED: transmembrane emp24 domain-co	0.983	0.830	0.642	5e-65
351724849	220	uncharacterized protein LOC100527418 [Gl	0.983	0.8	0.642	2e-64
21595553	208	putative coated vesicle membrane protein	0.983	0.846	0.607	2e-63
15231496	208	emp24/gp25L/p24 family/GOLD domain-conta	0.983	0.846	0.607	2e-63
296089935	211	unnamed protein product [Vitis vinifera]	0.983	0.834	0.625	3e-63

>gi|388519235|gb|AFK47679.1| unknown [Lotus japonicus]

 Score =  254 bits (649), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 148/176 (84%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH+V+ EGDT+H SFVV+KAD+PWHY DEGV+L V GP+ E++ DF  +++  FEFVA+K
Sbjct: 37  SHDVKYEGDTVHISFVVIKADSPWHYGDEGVDLVVKGPAGEQIHDFRDKTSEKFEFVAHK 96

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
            G++KFCFTNKSPYHET DFD+HV H++Y++QHAKDEH  P+L+QIAKLEEALY+I F+Q
Sbjct: 97  SGVHKFCFTNKSPYHETIDFDVHVGHFSYYEQHAKDEHFTPLLEQIAKLEEALYNIQFEQ 156

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN  MSRRAI+KA+  S  LI AS LQ++LL+RLF+RK G SRV
Sbjct: 157 HWLEAQTDRQAIVNDAMSRRAIHKALFESAALIGASALQVYLLQRLFERKLGTSRV 212

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495489|ref|XP_003618033.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|355519368|gb|AET00992.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|388521389|gb|AFK48756.1| unknown [Medicago truncatula]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 149/176 (84%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH+V+ EGDT+H SFVV+KAD+PWHY DEGV+L V GP+ E+++DF  +++  FEFVA+K
Sbjct: 39  SHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVVKGPAGEQIQDFRDKTSDKFEFVAHK 98

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
            G++KFCFTNKSPYHET DFD+HV H++Y +QHAKDEH NP+L+QIAKLEEALY+I F+Q
Sbjct: 99  PGVHKFCFTNKSPYHETIDFDVHVGHFSYFEQHAKDEHFNPLLEQIAKLEEALYNIQFEQ 158

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN  MSRRA++KA+  S  LI AS LQ++LL+RLF+RK G SRV
Sbjct: 159 HWLEAQTDRQAIVNDGMSRRAVHKAIFESAALIGASALQVYLLRRLFERKLGTSRV 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495491|ref|XP_003618034.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|355519369|gb|AET00993.1| Transmembrane emp24 domain-containing protein [Medicago truncatula]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/176 (65%), Positives = 149/176 (84%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH+V+ EGDT+H SFVV+KAD+PWHY DEGV+L V GP+ E+++DF  +++  FEFVA+K
Sbjct: 38  SHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVVKGPAGEQIQDFRDKTSDKFEFVAHK 97

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
            G++KFCFTNKSPYHET DFD+HV H++Y +QHAKDEH NP+L+QIAKLEEALY+I F+Q
Sbjct: 98  PGVHKFCFTNKSPYHETIDFDVHVGHFSYFEQHAKDEHFNPLLEQIAKLEEALYNIQFEQ 157

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN  MSRRA++KA+  S  LI AS LQ++LL+RLF+RK G SRV
Sbjct: 158 HWLEAQTDRQAIVNDGMSRRAVHKAIFESAALIGASALQVYLLRRLFERKLGTSRV 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453614|ref|XP_004144551.1| PREDICTED: transmembrane emp24 domain-containing protein p24beta2-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 147/176 (83%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH+V+ EGDT+H SFVV+KAD+PWHY D+GV+L + GPS E + DF  +++   EF+A+ 
Sbjct: 39  SHHVQYEGDTVHVSFVVIKADSPWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHN 98

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
           KGL++FCFTNKSPYHET DFD+HV H++YH+QHAKDEH NP++DQI+KLEEALY+I F+Q
Sbjct: 99  KGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQ 158

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN+ M +RAI+KAM  S  L+ AS LQ++LL+RLF+RK G SRV
Sbjct: 159 HWLEAQTDRQAIVNEGMGKRAIHKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447504|ref|XP_002265343.1| PREDICTED: uncharacterized protein LOC100245903 isoform 2 [Vitis vinifera] gi|225447506|ref|XP_002265305.1| PREDICTED: uncharacterized protein LOC100245903 isoform 1 [Vitis vinifera] gi|296085048|emb|CBI28463.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 148/176 (84%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH+V+ EGDT+H SFVV+KAD  WHY+++GV+L + GPS +++ DF  +++  FEFVA K
Sbjct: 39  SHDVQYEGDTVHVSFVVIKADASWHYAEDGVDLVIKGPSGDQIHDFRDKTSEKFEFVAQK 98

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
           KGL++FCFTNKSPY ET DFD+HV H+ Y+DQHAKDEH NP+L+QIAKLEEALY+I F+Q
Sbjct: 99  KGLHRFCFTNKSPYQETIDFDVHVGHFTYYDQHAKDEHFNPLLEQIAKLEEALYNIQFEQ 158

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN+ MS+RA++KAM  S  L+ AS LQI+LL+RLF+RK G+SRV
Sbjct: 159 HWLEAQTDRQAIVNEGMSQRAVHKAMFESVALVGASVLQIYLLQRLFERKLGISRV 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554509|ref|XP_003545588.1| PREDICTED: transmembrane emp24 domain-containing protein-like [Glycine max]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 147/176 (83%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH+V+ EGDT+H SFVV+KAD+PWHY DEGV+L V GPS E+++DF  +++  F+FVA+K
Sbjct: 37  SHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVVKGPSGEQIQDFRDKTSEKFDFVAHK 96

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
            G++KFCFTNKSPYHET DFD+HV H++Y +QHAKDEH  P+L+QI KLEEALY+I F+Q
Sbjct: 97  SGVHKFCFTNKSPYHETVDFDVHVGHFSYFEQHAKDEHFTPLLEQIGKLEEALYNIQFEQ 156

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN  MSRRA++KA+  S  LI AS LQ++LL+RLF+RK G SRV
Sbjct: 157 HWLEAQTDRQAIVNDAMSRRAVHKAIFESAALIGASALQVYLLQRLFERKLGTSRV 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724849|ref|NP_001235792.1| uncharacterized protein LOC100527418 [Glycine max] gi|255632300|gb|ACU16508.1| unknown [Glycine max]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 146/176 (82%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH+V+ EGDT+H SFVV+KAD+PWHY DEGV+L V GPS E+++DF  +++  F+FVA+K
Sbjct: 45  SHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVVKGPSGEQIQDFRDKTSEKFDFVAHK 104

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
            G++KFCFTNKSPYHET DFD+HV H++Y +QHAKDEH  P+L+QI KLEEALY+I F+Q
Sbjct: 105 SGVHKFCFTNKSPYHETVDFDVHVGHFSYFEQHAKDEHFTPLLEQIGKLEEALYNIQFEQ 164

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN  MSRRA+ KA+  S  LI AS LQ++LL+RLF+RK G SRV
Sbjct: 165 HWLEAQTDRQAIVNDAMSRRAVRKAIFESAALIGASALQVYLLQRLFERKLGTSRV 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595553|gb|AAM66112.1| putative coated vesicle membrane protein [Arabidopsis thaliana]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 147/176 (83%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH  E EGDTLH SFVV+K+D+ WH++++GV+L + GP+ E++ DF  + +A  +FV  K
Sbjct: 33  SHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPTGEQIHDFREQISAKHDFVVQK 92

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
           KG+Y+FCFTNKSPYHET DFD+ + H+AY+DQHAKDEH  P+++QI+KLEEALY+I F+Q
Sbjct: 93  KGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHFTPLMEQISKLEEALYNIQFEQ 152

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN+ MS+RA++KA+  SF LI ASFLQ++LL+RLF+RK G+SRV
Sbjct: 153 HWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQVYLLRRLFERKLGMSRV 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231496|ref|NP_187425.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gi|75313041|sp|Q9S7M9.1|P24B2_ARATH RecName: Full=Transmembrane emp24 domain-containing protein p24beta2; AltName: Full=p24 family protein beta1; Short=p24beta1; AltName: Full=p24 family protein beta2; Short=p24beta2; Flags: Precursor gi|6466951|gb|AAF13086.1|AC009176_13 putative coated vesicle membrane protein [Arabidopsis thaliana] gi|6648180|gb|AAF21178.1|AC013483_2 putative coated vesicle membrane protein [Arabidopsis thaliana] gi|13430712|gb|AAK25978.1|AF360268_1 putative coated vesicle membrane protein [Arabidopsis thaliana] gi|14532910|gb|AAK64137.1| putative coated vesicle membrane protein [Arabidopsis thaliana] gi|332641065|gb|AEE74586.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 147/176 (83%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SH  E EGDTLH SFVV+K+D+ WH++++GV+L + GP+ E++ DF  + +A  +FV  K
Sbjct: 33  SHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPTGEQIHDFREQISAKHDFVVQK 92

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
           KG+Y+FCFTNKSPYHET DFD+ + H+AY+DQHAKDEH  P+++QI+KLEEALY+I F+Q
Sbjct: 93  KGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHFTPLMEQISKLEEALYNIQFEQ 152

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQT+RQ+IVN+ MS+RA++KA+  SF LI ASFLQ++LL+RLF+RK G+SRV
Sbjct: 153 HWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQVYLLRRLFERKLGMSRV 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089935|emb|CBI39754.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 144/176 (81%)

Query: 4   SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
           SHNVE EGDT+H SFVV+K D  WHY+ +GV+L V GPS  +++D+  +++  FEF+A++
Sbjct: 36  SHNVEYEGDTIHASFVVIKVDASWHYNKDGVDLVVKGPSGNQIQDYRDKTSEKFEFMAHE 95

Query: 64  KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
           KGL++FCFTNKSPYHET DFD++  H+AY+DQHAKDEH NP+L+QI+KLEEALY+I F+Q
Sbjct: 96  KGLHRFCFTNKSPYHETIDFDVYTGHFAYYDQHAKDEHFNPLLEQISKLEEALYNIQFEQ 155

Query: 124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
           HW +AQTERQ+ VN  M+RRA+YKA   S  LI AS LQ++LL+RLF+RK G SRV
Sbjct: 156 HWLEAQTERQARVNDAMNRRAVYKAFYESAALIGASILQVYLLRRLFERKLGTSRV 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2091107	208	p24beta2 "p24 subfamily beta 2	0.983	0.846	0.607	1.6e-61
TAIR|locus:2094364	214	AT3G22845 [Arabidopsis thalian	0.988	0.827	0.372	2.6e-24
UNIPROTKB|G5E666	201	G5E666 "Uncharacterized protei	0.765	0.681	0.248	1.3e-11
UNIPROTKB|Q5ZKB0	201	TMED2 "Uncharacterized protein	0.765	0.681	0.241	9.4e-11
UNIPROTKB|C3V9V7	201	TMED2 "RNP24" [Bos taurus (tax	0.765	0.681	0.241	9.4e-11
UNIPROTKB|E2RGZ5	201	TMED2 "Uncharacterized protein	0.765	0.681	0.241	9.4e-11
UNIPROTKB|Q15363	201	TMED2 "Transmembrane emp24 dom	0.765	0.681	0.241	9.4e-11
UNIPROTKB|F2Z501	201	TMED2 "Uncharacterized protein	0.765	0.681	0.241	9.4e-11
UNIPROTKB|P49020	196	TMED2 "Transmembrane emp24 dom	0.765	0.698	0.241	9.4e-11
RGD|69243	201	Tmed2 "transmembrane emp24 dom	0.765	0.681	0.241	9.4e-11

TAIR|locus:2091107 p24beta2 "p24 subfamily beta 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 107/176 (60%), Positives = 147/176 (83%)

Query:     4 SHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYK 63
             SH  E EGDTLH SFVV+K+D+ WH++++GV+L + GP+ E++ DF  + +A  +FV  K
Sbjct:    33 SHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPTGEQIHDFREQISAKHDFVVQK 92

Query:    64 KGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQ 123
             KG+Y+FCFTNKSPYHET DFD+ + H+AY+DQHAKDEH  P+++QI+KLEEALY+I F+Q
Sbjct:    93 KGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHFTPLMEQISKLEEALYNIQFEQ 152

Query:   124 HWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
             HW +AQT+RQ+IVN+ MS+RA++KA+  SF LI ASFLQ++LL+RLF+RK G+SRV
Sbjct:   153 HWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQVYLLRRLFERKLGMSRV 208

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2094364 AT3G22845 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 66/177 (37%), Positives = 93/177 (52%)

Query:     3 VSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAY 62
             V   V  EGDT+  +FVVV  D  W     G++ TVT P+   V+     S   FEF A 
Sbjct:    38 VQEYVLYEGDTVSGNFVVVDHDIFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAP 97

Query:    63 KKGLYKFCFTNKSPYHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQ 122
             K G+YKFCF N     ET  F IHV H       AKDEH++P+  +IA+L EAL  +  +
Sbjct:    98 KSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAE 157

Query:   123 QHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLFDRKQGLSRV 179
             Q +  A+  R    N++  +R I+  +    FL  AS LQ+  +++LF +    +RV
Sbjct:   158 QKYLKARDTRHRHTNESTRKRVIFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|G5E666 G5E666 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 35/141 (24%), Positives = 65/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             + + +TGP ++ +   DR S+  + F A+  G YKFCF+N+  Y  TP    F I +   
Sbjct:    57 INMEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRM-YTMTPKIVMFTIDIGEV 115

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L   +  +  +Q + + Q      +N   + R +  +  
Sbjct:   116 PKGQDMETEAHQNKLEEMINELTVVMTAVKHEQEYMEVQERIHRAINDNTNSRVVLWSFF 175

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   176 EALVLVAMTLGQIYYLKRFFE 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q5ZKB0 TMED2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct:    57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct:   116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   176 EALVLVAMTLGQIYYLKRFFE 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

UNIPROTKB|C3V9V7 TMED2 "RNP24" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct:    57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct:   116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   176 EALVLVAMTLGQIYYLKRFFE 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2RGZ5 TMED2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct:    57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct:   116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   176 EALVLVAMTLGQIYYLKRFFE 196

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q15363 TMED2 "Transmembrane emp24 domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct:    57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct:   116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   176 EALVLVAMTLGQIYYLKRFFE 196

GO:0001843 "neural tube closure" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=IDA

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0007030 "Golgi organization" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IDA

GO:0035459 "cargo loading into vesicle" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042589 "zymogen granule membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F2Z501 TMED2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct:    57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct:   116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   176 EALVLVAMTLGQIYYLKRFFE 196

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P49020 TMED2 "Transmembrane emp24 domain-containing protein 2" [Cricetulus griseus (taxid:10029)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct:    52 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 110

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct:   111 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 170

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   171 EALVLVAMTLGQIYYLKRFFE 191

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0030137 "COPI-coated vesicle" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=ISS

GO:0072661 "protein targeting to plasma membrane" evidence=ISS

RGD|69243 Tmed2 "transmembrane emp24 domain trafficking protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:    34 VELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPYHETPD---FDIHVAHY 90
             +++ +TGP ++ +   DR S+  + F A+  G YKFCF+N+     TP    F I +   
Sbjct:    57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTM-TPKIVMFTIDIGEA 115

Query:    91 AYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAML 150
                     + H N + + I +L  A+  +  +Q + + +      +N   + R +  +  
Sbjct:   116 PKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFF 175

Query:   151 GSFFLITASFLQIHLLKRLFD 171
              +  L+  +  QI+ LKR F+
Sbjct:   176 EALVLVAMTLGQIYYLKRFFE 196

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001756 "somitogenesis" evidence=ISO

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0001892 "embryonic placenta development" evidence=IEA;ISO

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO;NAS

GO:0006903 "vesicle targeting" evidence=NAS

GO:0007030 "Golgi organization" evidence=ISO;ISS

GO:0010628 "positive regulation of gene expression" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS;IDA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA;ISO

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=ISO;ISS

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0036342 "post-anal tail morphogenesis" evidence=IEA;ISO

GO:0042589 "zymogen granule membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7M9	P24B2_ARATH	No assigned EC number	0.6079	0.9832	0.8461	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029074001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (214 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	4e-21

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score = 84.6 bits (210), Expect = 4e-21
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 10  EGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDER---VRDFDRRSTATFEFVAYKKGL 66
           +G  +  S+ V+   N        ++ T+T P           DR+S   F F A + G 
Sbjct: 20  KGTLVTGSYQVISGGNL------DIDFTITDPDGNGNVIYSKEDRKSGGKFSFTATESGE 73

Query: 67  YKFCFTNKSPYHETP--DFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQH 124
           YKFCF+N      +    FDI V   A     AK E ++P+ +++ KLE+ L DI  +Q 
Sbjct: 74  YKFCFSNSFSTFSSKTVSFDIKVGEEAK--DIAKKEKLDPLEEELKKLEDQLNDIKREQK 131

Query: 125 WFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITASFLQIHLLKRLF 170
           +   +  R    N++ + R ++ +++    LI  S LQ++ LKR F
Sbjct: 132 YLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYYLKRFF 177

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	94.78
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	92.62
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	89.53
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	88.47
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	88.28
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	84.19
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	82.76

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-50  Score=285.94  Aligned_cols=168  Identities=35%  Similarity=0.544  Sum_probs=162.1

Q ss_pred             CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCC--Cc
Q 040712            1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSP--YH   78 (179)
Q Consensus         1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s--~~   78 (179)
                      +||+|++. +|+.+.++|+|.+||      ..++++.|++|+|+.++..++.++|+|+|+++.+|.|++||+|..|  +|
T Consensus        31 eCf~e~~~-~gd~~~vsF~v~~gg------~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~s~mtp  103 (201)
T KOG1692|consen   31 ECFFENLE-EGDKLSVSFEVIDGG------FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKMSTMTP  103 (201)
T ss_pred             hhHhhhhc-cCCEEEEEEEEecCC------ccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCCCCCCc
Confidence            69999999 799999999999986      5799999999999999999988999999999999999999999998  59


Q ss_pred             eeeEEEEEecccCCCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHH
Q 040712           79 ETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLITA  158 (179)
Q Consensus        79 ~~V~f~~~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli~~  158 (179)
                      |.|.|++++|+.+..++.+++++.++|++.+++|.+.|..++.||+|+..|+++||.++|+||+||+|||++|.++||++
T Consensus       104 k~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~  183 (201)
T KOG1692|consen  104 KTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFEALVLIAM  183 (201)
T ss_pred             eEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHHHHHHHHH
Confidence            99999999999987778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccC
Q 040712          159 SFLQIHLLKRLFDRKQG  175 (179)
Q Consensus       159 ~~~Qv~~lk~fF~~k~~  175 (179)
                      +++|||||||||++|++
T Consensus       184 s~~QVyYLkRfFEvkrv  200 (201)
T KOG1692|consen  184 SVLQVYYLKRFFEVKRV  200 (201)
T ss_pred             HHHHHHHHHHhheeeec
Confidence            99999999999999986

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-42  Score=250.47  Aligned_cols=172  Identities=22%  Similarity=0.381  Sum_probs=159.1

Q ss_pred             CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcC--CCC-
Q 040712            1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNK--SPY-   77 (179)
Q Consensus         1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~--~s~-   77 (179)
                      +|+.|++. +|..+.|.|.+.+....   ....+++.|+||.|+.+++.++.++|+|+|++.+.|.|.+||.+.  ... 
T Consensus        33 kCi~EeI~-~n~lv~g~y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~~Cf~~~~~~~~p  108 (210)
T KOG1691|consen   33 KCISEEIH-ENVLVVGDYEIINPNGD---HSHKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYEACFTADVPGHKP  108 (210)
T ss_pred             Eeehhhhc-cCeEEEEEEEEecCCCC---ccceEEEEEEcCCCceeehhhccccceEEEEeccCCcEEEEEecccCCCCC
Confidence            59999999 69999999999975421   115799999999999999999999999999999999999999993  332 


Q ss_pred             --ceeeEEEEEecccC-CCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHH
Q 040712           78 --HETPDFDIHVAHYA-YHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFF  154 (179)
Q Consensus        78 --~~~V~f~~~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~v  154 (179)
                        ...|+|++..|.++ ||+++||+++++|++.++++|++.+..|+++.-|+|.||+++|+++|+||+||.|+|++.+++
T Consensus       109 ~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi~Sl~v  188 (210)
T KOG1691|consen  109 ETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSILSLVV  188 (210)
T ss_pred             CcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence              37899999999876 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccCC
Q 040712          155 LITASFLQIHLLKRLFDRKQGL  176 (179)
Q Consensus       155 li~~~~~Qv~~lk~fF~~k~~~  176 (179)
                      ++++++||++|||+||++||++
T Consensus       189 ~~~va~~QvlyLK~fF~kKKLI  210 (210)
T KOG1691|consen  189 LLSVAGWQVLYLKRFFQKKKLI  210 (210)
T ss_pred             HHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999974

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-40  Score=239.81  Aligned_cols=169  Identities=20%  Similarity=0.338  Sum_probs=154.0

Q ss_pred             CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCCC--c
Q 040712            1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPY--H   78 (179)
Q Consensus         1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s~--~   78 (179)
                      +|||+++++.++.++..|+|..||+      .+|++.|++|+|++++...++..+.|.|++...|+|++||+|.+|+  +
T Consensus        34 qC~Y~d~~~~~~~~~~~fqV~tGG~------fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN~fstf~~  107 (209)
T KOG1693|consen   34 QCFYEDLKKDDDTTSFEFQVQTGGH------FDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSNEFSTFSH  107 (209)
T ss_pred             hheeeecccCCceEEEEEEEEeCCc------eeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecCccccccc
Confidence            6999999965566999999999985      4999999999999999999999999999999999999999999985  7


Q ss_pred             eeeEEEEEecccCCCCcc--ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHH
Q 040712           79 ETPDFDIHVAHYAYHDQH--AKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSFFLI  156 (179)
Q Consensus        79 ~~V~f~~~~~~~~~~~~~--a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~vli  156 (179)
                      |.|.++++.|.+.+..+.  +.+...+.++..+..+++.|+.|.+.|.|.|.||++.+.+++++++||+|||++++++++
T Consensus       108 Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv  187 (209)
T KOG1693|consen  108 KIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWSLLEIIAVV  187 (209)
T ss_pred             eEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHHHHHHHHHH
Confidence            999999999977643322  233456789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccC
Q 040712          157 TASFLQIHLLKRLFDRKQG  175 (179)
Q Consensus       157 ~~~~~Qv~~lk~fF~~k~~  175 (179)
                      ++++.||+.||.||..|+.
T Consensus       188 ~iSi~Qv~ilk~fFt~~r~  206 (209)
T KOG1693|consen  188 VISIAQVFILKFFFTDRRK  206 (209)
T ss_pred             HHHHHHHHHHHHHHhccCc
Confidence            9999999999999998875

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-39  Score=233.39  Aligned_cols=174  Identities=18%  Similarity=0.259  Sum_probs=150.3

Q ss_pred             CcceeeecCCCcEEEEEEEEEeCCC---CC-CCCCCceEEEEECCCCC--eeecccceeeeeEEEEcccccceeEeEEcC
Q 040712            1 KKVSHNVECEGDTLHCSFVVVKADN---PW-HYSDEGVELTVTGPSDE--RVRDFDRRSTATFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus         1 ~Cf~e~v~~~~~~i~~~y~v~~~~~---~~-~~~~~~i~~~v~~P~g~--~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~   74 (179)
                      +||++++| +++.+.|+|.+.--+.   .| ..++.++.+.|.+|.++  +|+++...++|+|+|++..+|+|+||+.+.
T Consensus        31 KCF~eelp-k~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~  109 (215)
T KOG1690|consen   31 KCFIEELP-KGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSN  109 (215)
T ss_pred             cchhhhCC-CCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecc
Confidence            79999999 6999999999864221   12 24578899999999655  999999999999999999999999999866


Q ss_pred             CC-----CceeeEEEEEecccCCCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHH
Q 040712           75 SP-----YHETPDFDIHVAHYAYHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAM  149 (179)
Q Consensus        75 ~s-----~~~~V~f~~~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si  149 (179)
                      .+     +..+|.+++.+|..+..+ ...++..+.++.++..|++.+..|+.||.++|.||.++|++.||+|+|++|||+
T Consensus       110 s~awf~~aklRvhld~qvG~~a~l~-a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Wsv  188 (215)
T KOG1690|consen  110 STAWFNGAKLRVHLDIQVGDHANLD-AQIKETDKLLEGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWSV  188 (215)
T ss_pred             cchhhccceEEEEEEEeeCchhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehhH
Confidence            43     256899999999765221 123466788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCC
Q 040712          150 LGSFFLITASFLQIHLLKRLFDRKQGL  176 (179)
Q Consensus       150 ~~i~vli~~~~~Qv~~lk~fF~~k~~~  176 (179)
                      +|++||+++|+||+.+||+||.++|++
T Consensus       189 ~Q~vvL~~tc~wQmrhL~~FFvkqKlv  215 (215)
T KOG1690|consen  189 AQLVVLLVTCIWQMRHLKSFFVKQKLV  215 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999974

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-35  Score=216.15  Aligned_cols=170  Identities=19%  Similarity=0.320  Sum_probs=149.9

Q ss_pred             CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEEcCCCC--c
Q 040712            1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFTNKSPY--H   78 (179)
Q Consensus         1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~~s~--~   78 (179)
                      +|||+.++ .+..+..+|+|++|.     ++.+|+|++.+|.|.++.+...+..|.+++.+.+.|.|++||+|++|+  .
T Consensus        46 eCf~Q~v~-~~~tle~eyQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfDNsFS~fs~  119 (236)
T KOG3287|consen   46 ECFYQPVP-QGATLEVEYQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFDNSFSTFSR  119 (236)
T ss_pred             eeeeeecc-CCeEEEEEEEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEcCccccccc
Confidence            69999999 599999999999982     257999999999999999998899999999999999999999999995  7


Q ss_pred             eeeEEEEEeccc---C----CCCcccc-----ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 040712           79 ETPDFDIHVAHY---A----YHDQHAK-----DEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIY  146 (179)
Q Consensus        79 ~~V~f~~~~~~~---~----~~~~~a~-----~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~  146 (179)
                      |.|.|++-+...   .    .|.+..+     .-.++.+++.+..+.++|..+...|..+|+||.|+|.+.+++..||.|
T Consensus       120 K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~  199 (236)
T KOG3287|consen  120 KLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNF  199 (236)
T ss_pred             eEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhH
Confidence            999999954321   1    1222222     135678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 040712          147 KAMLGSFFLITASFLQIHLLKRLFDRKQGL  176 (179)
Q Consensus       147 ~si~~i~vli~~~~~Qv~~lk~fF~~k~~~  176 (179)
                      ||++|+++||+++++|+++|||+|+.|+..
T Consensus       200 WS~vq~~vmi~v~~iQVf~lrslFe~~~~~  229 (236)
T KOG3287|consen  200 WSMVQTLVMILVGIIQVFMLRSLFEVKSKS  229 (236)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence            999999999999999999999999988654

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=8.8e-38  Score=230.83  Aligned_cols=165  Identities=27%  Similarity=0.467  Sum_probs=5.6

Q ss_pred             CcceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEE--CCCCCeeeccccee-eeeEEEEcccccceeEeEEcCCCC
Q 040712            1 KKVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVT--GPSDERVRDFDRRS-TATFEFVAYKKGLYKFCFTNKSPY   77 (179)
Q Consensus         1 ~Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~--~P~g~~v~~~~~~~-~g~f~f~~~~~G~y~~Cf~n~~s~   77 (179)
                      +||+++++ +++.+.|+|.+.+++.     ..++++.|+  +|+|+.++...+.. +|.|+|+++++|+|++||+|+.+.
T Consensus        12 ~Cf~e~v~-~~~~i~~~y~v~~~~~-----~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~n~~~~   85 (183)
T PF01105_consen   12 ECFYEEVP-KGTTIRGSYRVTDGGG-----AYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFDNSSSS   85 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEcC-CCcEEEEEEEEeeccc-----cceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEEcCCCC
Confidence            69999999 5999999999998761     358999999  56669999886554 579999999999999999999874


Q ss_pred             --c-eeeEEEEEecccC-CCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHH
Q 040712           78 --H-ETPDFDIHVAHYA-YHDQHAKDEHINPILDQIAKLEEALYDIHFQQHWFDAQTERQSIVNKTMSRRAIYKAMLGSF  153 (179)
Q Consensus        78 --~-~~V~f~~~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~~i~  153 (179)
                        + +.|+|++++|.+. +..+.++++++++++..|++|.+.+..|.++|+|++.|+.+|+.++++++.|+++|++++++
T Consensus        86 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~si~~~~  165 (183)
T PF01105_consen   86 FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIMWWSIIQIV  165 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEEhHHHHHHH
Confidence              4 8999999998653 45667889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 040712          154 FLITASFLQIHLLKRLFD  171 (179)
Q Consensus       154 vli~~~~~Qv~~lk~fF~  171 (179)
                      +++++++||+++||+||+
T Consensus       166 vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  166 VLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             ------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=94.78  E-value=0.54  Score=30.74  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=43.1

Q ss_pred             CCcEEEEEEEEEeCCC-CCCCCCCceEEEEECCCCCeeecccc-e--eeeeEEEE--cc---cccceeEeEEcCCC
Q 040712           10 EGDTLHCSFVVVKADN-PWHYSDEGVELTVTGPSDERVRDFDR-R--STATFEFV--AY---KKGLYKFCFTNKSP   76 (179)
Q Consensus        10 ~~~~i~~~y~v~~~~~-~~~~~~~~i~~~v~~P~g~~v~~~~~-~--~~g~f~f~--~~---~~G~y~~Cf~n~~s   76 (179)
                      +|+.|.+...+.+.++ ..++.+..+.+.|.||+|+.+..... .  ..|.+++.  .+   ..|.|++=+....+
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~   88 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD   88 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence            5788888887766542 22345678999999999998877544 1  24443332  22   35999998887543

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=92.62  E-value=0.17  Score=35.28  Aligned_cols=28  Identities=14%  Similarity=0.252  Sum_probs=23.0

Q ss_pred             EEEcccccceeEeEEcCCC--CceeeEEEE
Q 040712           58 EFVAYKKGLYKFCFTNKSP--YHETPDFDI   85 (179)
Q Consensus        58 ~f~~~~~G~y~~Cf~n~~s--~~~~V~f~~   85 (179)
                      +++.+..|.|-++|+|++|  ..|++.+.+
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V  133 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRV  133 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeEEeeEEEEEE
Confidence            3566799999999999998  378887765

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=89.53  E-value=3.5  Score=30.42  Aligned_cols=54  Identities=19%  Similarity=0.232  Sum_probs=34.3

Q ss_pred             CceEEEEECCCCCeeec-ccceeeeeEEEEc---ccccceeEeEEcCCCCceeeEEEE
Q 040712           32 EGVELTVTGPSDERVRD-FDRRSTATFEFVA---YKKGLYKFCFTNKSPYHETPDFDI   85 (179)
Q Consensus        32 ~~i~~~v~~P~g~~v~~-~~~~~~g~f~f~~---~~~G~y~~Cf~n~~s~~~~V~f~~   85 (179)
                      ....+.+++|+|+.+.. ..+.......+..   .+.|.+++.+.|..+.+..+.+.+
T Consensus        41 ~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~~q~v~vtV   98 (179)
T PF09315_consen   41 SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSSSQTVTVTV   98 (179)
T ss_pred             CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCCcceEEEEE
Confidence            36788899999998866 1122233333333   568999999987765444444443

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.47  E-value=3.4  Score=25.11  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             cceeeecCCCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccce-----eeeeEEEEcccccceeEeE
Q 040712            2 KVSHNVECEGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRR-----STATFEFVAYKKGLYKFCF   71 (179)
Q Consensus         2 Cf~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~-----~~g~f~f~~~~~G~y~~Cf   71 (179)
                      .|.-.++ ++..+++..  ....       .+.++.+++++|..+......     ......|+++.+|.|-+=+
T Consensus         4 ~y~f~v~-ag~~l~i~l--~~~~-------~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    4 YYSFTVP-AGGTLTIDL--SGGS-------GDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEES-TTEEEEEEE--CETT-------SSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEc-CCCEEEEEE--cCCC-------CCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            3566788 587776553  3222       278899999998777663211     2345778889999998744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=88.28  E-value=4.1  Score=26.33  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|+|+.+.-. .+...|  ..+|+....|.|.+.+.-.
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~   77 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFG   77 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEEC
Confidence            4689999999999654332 122233  4667788888888888754

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=84.19  E-value=5.7  Score=25.01  Aligned_cols=31  Identities=13%  Similarity=0.244  Sum_probs=23.5

Q ss_pred             cEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecc
Q 040712           12 DTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDF   49 (179)
Q Consensus        12 ~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~   49 (179)
                      ..+.+.|.+..+.       ..+.+.|+|.+|++|++.
T Consensus        12 ~~~~~~~~l~~~a-------~~v~v~I~d~~G~~V~t~   42 (81)
T PF13860_consen   12 TKGSIEYTLPEDA-------DNVTVTIYDSNGQVVRTI   42 (81)
T ss_dssp             CEEEEEEEECSSC-------EEEEEEEEETTS-EEEEE
T ss_pred             EEEEEEEeCCCcc-------cEEEEEEEcCCCCEEEEE
Confidence            4677777776543       379999999999999874

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=82.76  E-value=5.2  Score=26.65  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CceEEEEECCCCCeeeccccee--e--eeEEEEcccccceeEeEEcCCC
Q 040712           32 EGVELTVTGPSDERVRDFDRRS--T--ATFEFVAYKKGLYKFCFTNKSP   76 (179)
Q Consensus        32 ~~i~~~v~~P~g~~v~~~~~~~--~--g~f~f~~~~~G~y~~Cf~n~~s   76 (179)
                      ..+.++|.|-+|+++|+..-..  .  -.+.......|.|.+=+.+...
T Consensus        48 ~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   48 GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            4799999999999999873222  2  2444444578999999988765

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	95.02
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	92.94
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.41
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	88.97
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	87.73
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	86.57
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.54
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	85.3
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	85.27
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	85.04
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.59
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.31
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.96
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	83.82
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.51
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.19
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	83.06
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	81.88
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	81.41
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	80.73

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=95.02  E-value=0.14  Score=41.24  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=27.1

Q ss_pred             EEEcccccceeEeEEcCCC--CceeeEEEEEecc
Q 040712           58 EFVAYKKGLYKFCFTNKSP--YHETPDFDIHVAH   89 (179)
Q Consensus        58 ~f~~~~~G~y~~Cf~n~~s--~~~~V~f~~~~~~   89 (179)
                      ++++.++|.|.++|+|++|  ..|.|.+.+.+..
T Consensus       352 ~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~  385 (403)
T 1olm_A          352 TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  385 (403)
T ss_dssp             EEECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             EEEcCCCeEEEEEEeccccceeceEEEEEEEEeC
Confidence            4678999999999999988  4799988888743

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=92.94  E-value=1.1  Score=28.51  Aligned_cols=65  Identities=18%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             CCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCeeecccce--eeee--EEEEc---ccccceeEeEEcCC
Q 040712           10 EGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRR--STAT--FEFVA---YKKGLYKFCFTNKS   75 (179)
Q Consensus        10 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~--~~g~--f~f~~---~~~G~y~~Cf~n~~   75 (179)
                      +|+.|.+..-+.+.+ ..+.....+.+.|.||+|+.+.+....  ..|.  ++|..   ...|.|++......
T Consensus        15 PGetV~~~~~~~~~~-~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           15 PGQTVKFRVVSMDEN-FHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             TTCEEEEEEEEECGG-GCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCEEEEEEEEECCC-CcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            578888887777543 212223347899999999988764222  1233  23333   24699999998653

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.41  E-value=0.67  Score=29.59  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ..++.+.|.+|+|..+-.. .+...|  ..+|+..+.|.|++++.-..
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G   76 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMG   76 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESS
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECC
Confidence            5689999999999765332 112233  46678889999999998554

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.97  E-value=0.97  Score=28.64  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             CCceEEEEECCCCCeeecc-cceee--eeEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRST--ATFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~--g~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ..++.+.|.+|+|..+.-. .+...  -..+|++.+.|.|.+++.-..
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g   68 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDG   68 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESS
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECC
Confidence            3579999999999755322 11123  456778899999999998553

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=87.73  E-value=2.8  Score=27.38  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             EEEEEEeCCCCCCCCCCceEEEEECCCCCeeecc-ccee--eeeEEEEcccccceeEeEEcCC
Q 040712           16 CSFVVVKADNPWHYSDEGVELTVTGPSDERVRDF-DRRS--TATFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        16 ~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~-~~~~--~g~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      .+|.|...+.     ...+.+.|.+|+|..+--. ....  .-..+|+..+.|.|.+.+.-..
T Consensus        30 ~~F~V~~~~a-----~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g   87 (112)
T 2d7p_A           30 ASFAVQLNGA-----RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNG   87 (112)
T ss_dssp             EEEEEECTTC-----CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESS
T ss_pred             EEEEEEeCCC-----CCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECC
Confidence            4566655442     3589999999999754332 1122  3456788899999999987543

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=86.57  E-value=2  Score=28.29  Aligned_cols=55  Identities=11%  Similarity=0.116  Sum_probs=36.7

Q ss_pred             CCcEEEEEEEEEeCCCCCCCCCCceEEEEECCCCCe---eecccceeeeeEEEEcccccceeEeEEcC
Q 040712           10 EGDTLHCSFVVVKADNPWHYSDEGVELTVTGPSDER---VRDFDRRSTATFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        10 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~---v~~~~~~~~g~f~f~~~~~G~y~~Cf~n~   74 (179)
                      +|..+++..  . ++       ..+-+.|.+|+|..   ++..+....+.++-+.+.+|.|++=+...
T Consensus        38 aGQ~l~V~l--s-~~-------~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~   95 (114)
T 4dzg_A           38 AGQTMTVXI--G-GS-------SNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQM   95 (114)
T ss_dssp             CCCEEEC-C--E-ES-------TTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECC
T ss_pred             CCCEEEEEe--C-CC-------CcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEec
Confidence            466665555  2 22       25788899999874   34433223458888999999999999876

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.54  E-value=3.2  Score=26.57  Aligned_cols=43  Identities=21%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             CCceEEEEECCCCCeeecccceeee--eEEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDFDRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|++..+-- .+...|  ..+|+..+.|.|.+.+.-.
T Consensus        41 ~~~l~v~v~~p~~~~v~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~   85 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEITF-DDHKNGSCGVSYIAQEPGNYEVSIKFN   85 (105)
T ss_dssp             CCCEEEEEESSSCEEEEE-CCCCSSCCCEEEEESSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCEEEE-EECCCCEEEEEEEECCCceEEEEEEEC
Confidence            468999999999865522 223344  5778888999999999744

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=85.30  E-value=4.1  Score=25.10  Aligned_cols=55  Identities=16%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             EEEEEEeCCCCCCCCCCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcC
Q 040712           16 CSFVVVKADNPWHYSDEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        16 ~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ..|.|...++    ....+.+.|.+|+|..+... .+...|  ..+|+..+.|.|.+.+.-.
T Consensus        18 ~~F~v~~~~a----G~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~   75 (89)
T 3cnk_A           18 SSFTVDCSKA----GNNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWG   75 (89)
T ss_dssp             EEEEEECTTS----CSCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEET
T ss_pred             EEEEEEECcC----CCCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEEC
Confidence            3455554332    24679999999998633221 122233  4567788888888888744

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=85.27  E-value=5.2  Score=25.31  Aligned_cols=53  Identities=9%  Similarity=0.223  Sum_probs=33.1

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEc
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTN   73 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n   73 (179)
                      +|.|...+.    ....+.+.|.+|+|..+.-. .+...|  ..+|+....|.|.+.+.-
T Consensus        28 ~F~V~~~~a----G~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~   83 (100)
T 3rgh_A           28 QFQVDCSSA----GSAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKY   83 (100)
T ss_dssp             EEEEECTTS----CSCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEE
T ss_pred             EEEEEECCC----CCceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEE
Confidence            455554432    25689999999998654322 112233  466777888888888763

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=85.04  E-value=4.1  Score=26.51  Aligned_cols=55  Identities=11%  Similarity=0.233  Sum_probs=35.4

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      .|.|...+.    ....+.+.|.+|+|..+... .+...|  ..+|+..+.|.|.+.+.-..
T Consensus        33 ~F~V~~~da----G~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   90 (115)
T 2d7m_A           33 EFTIDARDA----GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGG   90 (115)
T ss_dssp             EEEEEESSS----CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESS
T ss_pred             EEEEEECCC----CCCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECC
Confidence            455554332    24579999999998644332 112234  45678888999999987543

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.59  E-value=1.6  Score=28.06  Aligned_cols=45  Identities=16%  Similarity=0.178  Sum_probs=32.1

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ...+.+.|.+|+|..+--. .....|  ..+|+..+.|.|.+.+.-..
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g   77 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRG   77 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSS
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECC
Confidence            5689999999999754432 112233  46678889999999998554

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.31  E-value=5.6  Score=25.50  Aligned_cols=56  Identities=18%  Similarity=0.178  Sum_probs=35.5

Q ss_pred             EEEEEEeCCCCCCCCCCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           16 CSFVVVKADNPWHYSDEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        16 ~~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ..|.|...+.    ....+.+.|.+|+|..+... .+...|  ..+|+..+.|.|.+.+.-..
T Consensus        31 ~~F~V~~~~a----G~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   89 (108)
T 2dj4_A           31 QSFTVDSSKA----GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   89 (108)
T ss_dssp             EEEEEECTTT----CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             EEEEEEECCC----CCceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            3555554332    24689999999999654332 112234  45677888899999887543

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.96  E-value=4.5  Score=25.89  Aligned_cols=53  Identities=26%  Similarity=0.468  Sum_probs=34.8

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeee--eEEEEcccccceeEeEEcC
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      .|.|...+.    ....+.+.|.+|++..+.-.+ ...|  ..+|+..+.|.|.+.+.-.
T Consensus        31 ~F~v~t~da----g~g~l~v~v~gp~~~~~~v~d-~~dGty~v~Y~p~~~G~y~I~V~~~   85 (105)
T 2dic_A           31 VFTVVTRGA----GIGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYG   85 (105)
T ss_dssp             EEEEECTTT----CSSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEET
T ss_pred             EEEEEEccC----CCCceEEEEECCCCCeEEEEE-CCCCeEEEEEEeCCCeEEEEEEEEC
Confidence            455555432    245799999999885442222 2334  5677888899999998744

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=83.82  E-value=5.3  Score=24.93  Aligned_cols=44  Identities=14%  Similarity=0.112  Sum_probs=28.4

Q ss_pred             CCceEEEEECCCCCeeec---ccceeeeeEEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRD---FDRRSTATFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~---~~~~~~g~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|+|..+..   ..+...-..+|+..+.|.|.+.+.-.
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~   82 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWG   82 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEEC
Confidence            457999999999853211   11111334567778888888888744

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.51  E-value=7.1  Score=25.33  Aligned_cols=53  Identities=21%  Similarity=0.435  Sum_probs=35.1

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeee--eEEEEcccccceeEeEEcC
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      .|.|...+.    +...+.+.|.+|++..+-- .+...|  ..+|+..+.|.|.+.+.-.
T Consensus        41 ~F~v~t~da----g~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~   95 (115)
T 2eea_A           41 TFTIVTEDA----GEGGLDLAIEGPSKAEISC-IDNKDGTCTVTYLPTLPGDYSILVKYN   95 (115)
T ss_dssp             EEEEECSSC----CSSCEEEEEESSSCCEECC-BCCSSSEEEEEEECSSCSCEEEEEEES
T ss_pred             EEEEEcccC----CCCceEEEEECCCCceEEE-EECCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            455554332    2468999999999854422 223344  5678888999999988744

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.19  E-value=4  Score=27.09  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=31.5

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ...+.+.|.+|+|..+... .+...|  ..+|+..+.|.|.+++.-..
T Consensus        42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g   89 (124)
T 2dmb_A           42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGG   89 (124)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESS
T ss_pred             CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECC
Confidence            4689999999998654332 111233  56688889999999998543

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=83.06  E-value=5.8  Score=24.86  Aligned_cols=53  Identities=19%  Similarity=0.395  Sum_probs=34.1

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeee--eEEEEcccccceeEeEEcC
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      .|.|...+.    ....+.+.|.+|++..+.-. +...|  ..+|+..+.|.|.+.+.-.
T Consensus        26 ~F~v~t~da----g~~~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~   80 (97)
T 2bp3_A           26 TFTVNTKDA----GEGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYN   80 (97)
T ss_dssp             EEEEECTTC----CSEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEET
T ss_pred             EEEEEECCC----CCCcEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEEC
Confidence            455554332    25689999999988544222 12234  5677888889999988743

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=81.88  E-value=6.6  Score=26.64  Aligned_cols=43  Identities=14%  Similarity=0.271  Sum_probs=29.3

Q ss_pred             CCceEEEEECCCCCeeecccceee-eeEEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDFDRRST-ATFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~~~~~-g~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|++..+--.+ ..+ -..+|+..+.|.|.+.+.-.
T Consensus        75 ~g~l~v~I~gPs~~~~~~~d-~~dGy~V~YtP~~~G~y~I~Vk~~  118 (138)
T 2nqc_A           75 SGALSVTIDGPSKVQLDCRE-CPEGHVVTYTPMAPGNYLIAIKYG  118 (138)
T ss_dssp             SCCEEEEEESSSCCEEEEEE-ETTEEEEEEECCSCEEEEEEEEES
T ss_pred             CCcEEEEEECCCCCeeeEEE-CCCcEEEEEEcCCCEEEEEEEEEC
Confidence            45799999999986443221 122 45667888889998888733

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=81.41  E-value=5  Score=25.00  Aligned_cols=44  Identities=20%  Similarity=0.391  Sum_probs=29.3

Q ss_pred             CCceEEEEECCCCCeeeccc-ceeeeeEEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDFD-RRSTATFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~-~~~~g~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|++..+.-.+ +.-.=..+|+..+.|.|.+.+.-.
T Consensus        33 ~~~~~v~v~gp~~~~~~v~d~~dGty~v~Y~p~~~G~y~I~V~~~   77 (94)
T 2w0p_A           33 AGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFN   77 (94)
T ss_dssp             SCCEEEEEEESSCCEEEEEECTTSCEEEEEECSSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCeEEEEECCCCEEEEEEEECCCceEEEEEEEC
Confidence            45789999999985442221 111335677888889999888743

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.73  E-value=3.7  Score=26.93  Aligned_cols=55  Identities=15%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      .|.|...+.    ....+.+.|.+|+|..+... .+...|  ..+|+..+.|.|.+.+.-..
T Consensus        43 ~F~V~~~da----G~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g  100 (119)
T 2e9j_A           43 DFAIDARDA----GEGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGG  100 (119)
T ss_dssp             EEEEEESSC----CCCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESS
T ss_pred             EEEEEECCC----CCCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            455554332    24689999999998644322 112234  45677788899998887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.43
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	94.04
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.27
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.06
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.66
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.82
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	88.64
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	88.6
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	88.39
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	88.02
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	87.37
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.08
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	86.96
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.69
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.95
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.51
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	84.03
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	82.15

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00033  Score=45.64  Aligned_cols=80  Identities=15%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             ecCCCcEEEEEEEEEeCCCC--CC--CCCCceEEEEECC--CC--------Ceeecccc------eeeeeEEEEcccccc
Q 040712            7 VECEGDTLHCSFVVVKADNP--WH--YSDEGVELTVTGP--SD--------ERVRDFDR------RSTATFEFVAYKKGL   66 (179)
Q Consensus         7 v~~~~~~i~~~y~v~~~~~~--~~--~~~~~i~~~v~~P--~g--------~~v~~~~~------~~~g~f~f~~~~~G~   66 (179)
                      |. .|..+.+.|.|...|+.  |.  .++.+|.|.|.-+  .|        ..+.....      ...|.  |.+.+.|.
T Consensus        10 V~-~G~~~~v~~~v~~~Gs~l~WeF~t~~~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~--~~~~~~G~   86 (119)
T d1olma2          10 IS-RGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGT--LTCSDPGI   86 (119)
T ss_dssp             EC-TTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEE--EECCSCEE
T ss_pred             EC-CCCEEEEEEEEeCCCcEEEEEEEeCCccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccE--EEcCCCEE
Confidence            44 46666666666654431  21  2345788888521  11        12322211      11344  77789999


Q ss_pred             eeEeEEcCCC--CceeeEEEEEecc
Q 040712           67 YKFCFTNKSP--YHETPDFDIHVAH   89 (179)
Q Consensus        67 y~~Cf~n~~s--~~~~V~f~~~~~~   89 (179)
                      |.+||+|++|  ..|.|.+.+++..
T Consensus        87 Y~l~FDNs~S~~~sK~l~Y~i~v~~  111 (119)
T d1olma2          87 YVLRFDNTYSFIHAKKVNFTVEVLL  111 (119)
T ss_dssp             EEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             EEEEEeCCcceEEeeEEEEEEEEEC
Confidence            9999999998  4899999998843

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.077  Score=32.76  Aligned_cols=55  Identities=11%  Similarity=0.233  Sum_probs=36.9

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      .|.|...+.    ....+.+.|.+|+|+.+--. .....|  ..+|+..+.|.|.+.+.-..
T Consensus        26 ~F~Vd~~~a----G~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   83 (102)
T d2d7ma1          26 EFTIDARDA----GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGG   83 (102)
T ss_dssp             EEEEEESSS----CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESS
T ss_pred             EEEEEeCCC----CCCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECC
Confidence            455544332    24689999999999755432 122234  46889999999999997543

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.35  Score=29.42  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ...+++.|.+|+|..+--. .....|  ..+|+..+.|.|.+.+....
T Consensus        33 ~g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g   80 (99)
T d2d7pa1          33 RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNG   80 (99)
T ss_dssp             CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECC
Confidence            4579999999999765432 222344  45688899999999987554

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.06  E-value=0.54  Score=28.33  Aligned_cols=42  Identities=14%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             CCceEEEEECCCCCeeecccceeeeeEEEEcccccceeEeEE
Q 040712           31 DEGVELTVTGPSDERVRDFDRRSTATFEFVAYKKGLYKFCFT   72 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~~~~~g~f~f~~~~~G~y~~Cf~   72 (179)
                      ...+.+.|.+|++..+--..+...-..+|++.+.|.|.+.+.
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~   75 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIK   75 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEE
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEE
Confidence            468999999999976644332223467899999999999986

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.54  Score=28.44  Aligned_cols=53  Identities=23%  Similarity=0.370  Sum_probs=35.4

Q ss_pred             EEEEEeCCCCCCCCCCceEEEEECCCCCeeecccceeee--eEEEEcccccceeEeEEcC
Q 040712           17 SFVVVKADNPWHYSDEGVELTVTGPSDERVRDFDRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        17 ~y~v~~~~~~~~~~~~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      .|.|...++    ....+.+.|.+|++..+--.+ ...|  ..+|++.+.|.|.+.+.-.
T Consensus        24 ~F~V~~~~a----G~g~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~   78 (98)
T d2di8a1          24 DFIVDTRDA----GYGGISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFA   78 (98)
T ss_dssp             EEEEECTTT----CBCCEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEES
T ss_pred             EEEEEeCCC----CCCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEEC
Confidence            455554332    246899999999887553322 2234  4668889999999998744

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=0.37  Score=29.90  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=33.0

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ...+.+.|.+|+|..+--. .....|  ..+|+..+.|.|++.+.-..
T Consensus        35 ~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g   82 (111)
T d2dmba1          35 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGG   82 (111)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESS
T ss_pred             CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECC
Confidence            4689999999998765432 112244  57889999999999998554

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.68  Score=27.63  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=31.9

Q ss_pred             CCceEEEEECCCCCeeecccceeee--eEEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDFDRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|++..+--.+ ...|  ..+|++.+.|.|.+.+.-.
T Consensus        32 ~g~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~   76 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFN   76 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEET
T ss_pred             CCceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEEC
Confidence            46899999999987553322 2344  4589999999999998754

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=1  Score=26.77  Aligned_cols=43  Identities=21%  Similarity=0.423  Sum_probs=31.4

Q ss_pred             CCceEEEEECCCCCeeecccceeeee--EEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDFDRRSTAT--FEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~~~~~g~--f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|++..+.-... ..|.  .+|++.+.|.|.+-+.-.
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~~-~dg~y~v~ytP~~~G~h~i~V~~~   77 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTDN-QDGTCSVSYLPVLPGDYSILVKYN   77 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEEC-SSSEEEEEEECSSCEEEEEEEEET
T ss_pred             CCceEEEEEeCCCceEEEEEC-CCCEEEEEEEECCCccEEEEEEEC
Confidence            568999999999976544322 3454  468999999999977643

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=1.3  Score=26.75  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+++.|.+|+|..+.-. .....|  ..+|+..+.|.|++-+.-.
T Consensus        35 ~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~   81 (101)
T d2dj4a1          35 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYA   81 (101)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEES
T ss_pred             CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEEC
Confidence            4689999999999865432 122234  4678888999999988644

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.24  Score=29.53  Aligned_cols=44  Identities=20%  Similarity=0.181  Sum_probs=29.4

Q ss_pred             CCceEEEEECCCCCeeecc-cceeeee--EEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTAT--FEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~n~   74 (179)
                      ..++.+.|.+|+|+.+-.. .....|.  .+|+..+.|.|.+-+.-.
T Consensus        23 ~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~   69 (88)
T d2j3sa2          23 IQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYK   69 (88)
T ss_dssp             CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEET
T ss_pred             CCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEEC
Confidence            3579999999999876543 2223454  458888999999888744

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.51  Score=27.49  Aligned_cols=45  Identities=18%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             CCceEEEEECCCCCeeecc-cceeee--eEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTA--TFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g--~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      +..+.+.|.+|+|..+-.. .....|  ..+|+..+.|.|.+=+....
T Consensus        14 ~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g   61 (80)
T d2d7na1          14 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDG   61 (80)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESS
T ss_pred             CCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECC
Confidence            5689999999999865432 112234  57788899999998877554

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=1.2  Score=26.60  Aligned_cols=44  Identities=25%  Similarity=0.472  Sum_probs=31.5

Q ss_pred             CCceEEEEECCCCCeeecccceeeee--EEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDFDRRSTAT--FEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~~~~~g~--f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ..++.+.|.+|++..+--.. ...|.  .+|++.+.|.|.+.+.-..
T Consensus        34 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2dica1          34 IGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGG   79 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCCcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            46899999999986553221 22344  5688899999999997543

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.96  E-value=1.6  Score=25.99  Aligned_cols=45  Identities=13%  Similarity=0.179  Sum_probs=31.9

Q ss_pred             CCceEEEEECCCCCeeecc-ccee--eeeEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRS--TATFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~--~g~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ...+.+.|.+|+|..+--. ....  .-..+|+..+.|.|++.+.-..
T Consensus        36 ~g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            4579999999998654321 1222  3456889999999999997543

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.75  Score=27.71  Aligned_cols=45  Identities=13%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             CCceEEEEECCCCCeeecc---cceeeeeEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDF---DRRSTATFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~---~~~~~g~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ...+.+.|.+|+|..+.-.   .+...-..+|+..+.|.|++.+.-..
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   81 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   81 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECC
Confidence            4589999999998755332   12123467889999999999997543

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=2.1  Score=26.41  Aligned_cols=45  Identities=24%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             CCceEEEEECCCCCeeeccc-ceeeeeEEEEcccccceeEeEEcCC
Q 040712           31 DEGVELTVTGPSDERVRDFD-RRSTATFEFVAYKKGLYKFCFTNKS   75 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~~-~~~~g~f~f~~~~~G~y~~Cf~n~~   75 (179)
                      ...+.+.|.+|++..+.-.+ +...-..+|+..+.|.|++.+.-..
T Consensus        54 ~g~l~v~i~~p~~~~~~v~~~~dG~y~v~ytP~~~G~y~i~V~~~g   99 (118)
T d2di9a1          54 TGGLGLTVEGPCEAKIECSDNGDGTCSVSYLPTKPGEYFVNILFEE   99 (118)
T ss_dssp             SSCEEEEECSSSCCEEEEEECSSSEEEEEEECSSSSEEEEEEEESS
T ss_pred             CCccEEEEecCCceEEEEEECCCCEEEEEEEeCCcEeEEEEEEECC
Confidence            46899999999987553322 1123456788899999999998543

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=0.33  Score=29.62  Aligned_cols=42  Identities=12%  Similarity=0.174  Sum_probs=29.0

Q ss_pred             CCceEEEEECCCCCeeecc-cceeeee--EEEEcccccceeEeEE
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTAT--FEFVAYKKGLYKFCFT   72 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~   72 (179)
                      ...+.+.|.+|+|..+--. .....|.  .+|+..+.|.|.+=+.
T Consensus        37 ~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~   81 (103)
T d2dmca1          37 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIK   81 (103)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECB
T ss_pred             CCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEE
Confidence            4689999999999765322 1222343  5688889999987554

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.03  E-value=0.58  Score=28.42  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             CCceEEEEECCCCCeeecc-cceeeee--EEEEcccccceeEeEEcC
Q 040712           31 DEGVELTVTGPSDERVRDF-DRRSTAT--FEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        31 ~~~i~~~v~~P~g~~v~~~-~~~~~g~--f~f~~~~~G~y~~Cf~n~   74 (179)
                      ...+.+.|.+|+|..+-.. .+...|.  .+|++...|.|.+-+.-.
T Consensus        43 g~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~   89 (104)
T d1qfha1          43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR   89 (104)
T ss_dssp             CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEET
T ss_pred             CceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEEC
Confidence            4579999999998765432 1222444  477888889999888644

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.15  E-value=3.2  Score=25.21  Aligned_cols=59  Identities=19%  Similarity=0.300  Sum_probs=36.1

Q ss_pred             EEEEEEeCCCC---CCCCCCceEEEEECCCCCeeecccceeee--eEEEEcccccceeEeEEcC
Q 040712           16 CSFVVVKADNP---WHYSDEGVELTVTGPSDERVRDFDRRSTA--TFEFVAYKKGLYKFCFTNK   74 (179)
Q Consensus        16 ~~y~v~~~~~~---~~~~~~~i~~~v~~P~g~~v~~~~~~~~g--~f~f~~~~~G~y~~Cf~n~   74 (179)
                      .+|.|...+..   .......+.+.|.+|.+.+-..-.....|  ..+|++...|.|.+.+.-.
T Consensus        12 ~tFtV~a~D~~G~~~~~G~~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~   75 (108)
T d1qfha2          12 FTFTVAAKNKKGEVKTYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLN   75 (108)
T ss_dssp             EEEEEECBCTTSSBCSSCCCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEET
T ss_pred             EEEEEEeecCCCCeeccCCCeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEEC
Confidence            46666653321   11235689999999988643222222233  4567788899999888744