Citrus Sinensis ID: 040737


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
MKALKTPCILIHVALILLCLRTQICYGQDYPDAESPPAPPAPPPGQDLCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRPGEPQVPGKQQSVISFLKKKTPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLIQDR
ccccccHHHHHHHHHHHHHEEEEEEEccccccccccccccccccccccccEEEEEEEEcccEEEcccccccccccccEEEEEEEEcccccccccEEEEEEEEccEEEEEcccEEEccccccccccccccEEEcccHHHHHHHHHHccccccEEEEEEEEEEEEccccccccccccEEEcccccccccccccccEEEEcccccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEccccccccccccccEEEccccEEEEEcccEEEEEcccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEcccccccccccccEEcccccccccccccEEEEEEEEEEEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEcccccccEEEEEEEcEEcccccccEEEEEcccccHHHHHcccccccccccccccccEEEEEEEccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccc
cccccHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccEEEEEEEEccccEcccccccccHcccHEEEEEEEEcccccHcccEEEEEEEcccEEEEEcccEEEEccccccccccccEEEEcccHHHHHcHHHHccccHHHEEEEEEEEcccccccccccccccEEEcccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEEccccccccccccEEcccHHcccccccccccccccccEEEEcccccccccccccccHcccccEEccccccHHHcEEEEEEEEEcccccccccEEcccccEEEEccccccccccccEEcccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEcccccccccEEEEEEcccccccEEEEEEccccccccccccEHHEccHHHHHHHHHccccccccccccccEEEEEEEEEcccccEEEccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
MKALKTPCILIHVALILLCLRTQicygqdypdaesppappapppgqdlcngiFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSatgatiidggdfpaavgngttfvgnpqADLKTAIEtagdypqisaqieikgtqfgvkpptipmpkslklvndgylcpaakndgsymytcckkdpkfkappvkgtkfaprqngdllLSYDVMQAYGNNYLAQVtmenehplgrldhwnltwEWQNNEFISQMRgafthkkdisgclygpagkyykefdfsqvvncekkpiisdlpatyfndtklgklpyccrngsllpklmdesKATSVFQLTvfklpphdnrtalvppmkwqirgdlnpnyrcgppirveptefpdpsglqsttTAVASWQVVCNITkseikqssccvsfsayynesiipcptcacgcpdpekcnpkakamllpseallvpfsnrTNKVVAWAglkhlpipkplpcpdncgvsinwhvstdykdgwtARVTlfnwdtlpfeDWFLAVKMDkafdgyenvysfngtrlpnkenkTLFFQGLEGLNYLVgltngtrpgepqvpgkqqSVISFLkkktpnidvqrgdgfpakvyfngeecalpkdfpkrdaahkSAVNIVLIIFITVLTFVLIQDR
MKALKTPCILIHVALILLCLRTQICYGQDYPDAESPPAPPAPPPGQDLCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTvfklpphdnrtalvppmkwqirgdLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYsfngtrlpnkENKTLFFQGLEGLNYLVGLTNGTRPGEPQVPGKQQSVISFLKKktpnidvqrgdGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLIQDR
MKALKTPCILIHVALILLCLRTQICYGQDYPDAESppappapppGQDLCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRPGEPQVPGKQQSVISFLKKKTPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLIQDR
***********************************************LCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRV*************TTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTN****************ISFLKKKTPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLI***
******P*ILIHVALILLCLRTQICYGQ******************DLCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFK*P********VPPMKWQIRGDLNPNYRCGPPIRV**********LQSTTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCP********************************WAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTN************QQSVI**********DVQRGDGFPAKVYFNGEECALPKDF************IVLIIFITVLTFVLIQDR
MKALKTPCILIHVALILLCLRTQICYGQDYPDAESPPAPPAPPPGQDLCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRPG*********SVISFLKKKTPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLIQDR
*KALKTPCILIHVALILLCLRTQICYGQDYPDAESPPAPPAPPPGQDLCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRPGEPQVPGKQQSVISFLKKKTPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLIQDR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
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SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKALKTPCILIHVALILLCLRTQICYGQDYPDAESPPAPPAPPPGQDLCNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRPGEPQVPGKQQSVISFLKKKTPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLIQDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query662 2.2.26 [Sep-21-2011]
Q9LJU0672 COBRA-like protein 10 OS= yes no 0.980 0.965 0.594 0.0
Q9T045668 COBRA-like protein 11 OS= no no 0.957 0.949 0.576 0.0
Q8GZ17661 COBRA-like protein 7 OS=A no no 0.900 0.901 0.519 0.0
Q9FJ13663 COBRA-like protein 9 OS=A no no 0.910 0.909 0.506 0.0
Q9LIB6653 COBRA-like protein 8 OS=A no no 0.932 0.944 0.503 0.0
Q94KT8456 Protein COBRA OS=Arabidop no no 0.558 0.811 0.294 5e-37
Q9LFW3431 COBRA-like protein 4 OS=A no no 0.587 0.902 0.287 3e-36
Q8L8Q7441 COBRA-like protein 2 OS=A no no 0.595 0.893 0.271 4e-36
Q6Z4G8446 COBRA-like protein 1 OS=O no no 0.601 0.892 0.289 6e-36
Q60E70457 COBRA-like protein 3 OS=O no no 0.614 0.890 0.286 3e-35
>sp|Q9LJU0|CBL10_ARATH COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1 Back     alignment and function desciption
 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/659 (59%), Positives = 489/659 (74%), Gaps = 10/659 (1%)

Query: 11  IHVALILLCLRTQICY---GQDYPDAESPPAPPA-PPPGQDLCNGIFLTYNFMGRELLYP 66
           +  +L L    + I +   GQDY          A PPP    CNGIF++YNF  RE  YP
Sbjct: 16  VRYSLSLFIFLSSILFLSNGQDYGMPGEDGGGGAEPPPEMAHCNGIFMSYNFGSREREYP 75

Query: 67  HLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVG 126
           H+KN +AQ+WAFK+ A +VNAG EELK W++F+GFRH+E++VSATGAT +DG D+P    
Sbjct: 76  HVKNVTAQSWAFKSTAMIVNAGREELKGWQMFIGFRHKELIVSATGATPMDG-DYPLDAS 134

Query: 127 NGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCP 186
           NGTTFVG+P  DLKT+IETAGD+ QISA IEI GT FGV     PMP+++KL NDG+ CP
Sbjct: 135 NGTTFVGSPNMDLKTSIETAGDFTQISANIEITGTLFGVSKAVTPMPRTIKLTNDGWECP 194

Query: 187 AAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENE 246
           AAK  G  M+ CCK++PK K      TKFAPR+ GDL + YDV+Q++ +NYLAQVT++N+
Sbjct: 195 AAKRKGGSMHVCCKRNPKIKNKIGLKTKFAPRRYGDLNIVYDVLQSFDSNYLAQVTIDND 254

Query: 247 HPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKK 306
           +PLGRLD WNLT+EW   EFI+ MRGA+THKKD S CLY  AG+YYK+ DFSQV+NC++K
Sbjct: 255 NPLGRLDRWNLTFEWMRGEFINTMRGAYTHKKDPSECLYSKAGQYYKDLDFSQVMNCQRK 314

Query: 307 PIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVP 366
           P ISDLP     D   GKLP+CC+NG+LLP +MD SK+ S+FQL VFKLPP  NRTAL P
Sbjct: 315 PAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIMDPSKSRSMFQLQVFKLPPDLNRTALYP 374

Query: 367 PMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCC 426
           P  W+I G LNP Y+CGPP+RV+P++FPDPSGL + T A++SWQVVCNITK + + S CC
Sbjct: 375 PQHWKIDGVLNPQYKCGPPVRVDPSQFPDPSGLLAVTYAISSWQVVCNITKPKAQASRCC 434

Query: 427 VSFSAYYNESIIPCPTCACGCP--DPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGL 484
           VSFSA+YN S +PC TCACGC   D + CN  +  +LLP +ALLVPF NRT K  AWA  
Sbjct: 435 VSFSAFYNNSAVPCNTCACGCNDIDTDTCNANSNPLLLPPDALLVPFDNRTLKAKAWAKQ 494

Query: 485 KHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDG 544
            H+P+PK LPCPDNCGVSINWHVSTDYK+GWTAR+T+FNW    FEDWF+A+ M KA  G
Sbjct: 495 NHMPVPKKLPCPDNCGVSINWHVSTDYKNGWTARLTVFNWRDFAFEDWFVAIDMGKAGPG 554

Query: 545 YENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRP-GEPQVPGKQQSVISFLKKK 603
           YENVYSFNGTR+P   N+T+ FQGL G+NYLVG  NGT P  +P VPGKQQSVISF KK 
Sbjct: 555 YENVYSFNGTRVP-PSNRTVIFQGLPGMNYLVGQVNGTNPLRDPPVPGKQQSVISFTKKN 613

Query: 604 TPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVL-IIFITVLTFVLIQD 661
              +++  GDGFP K++FNGEECALPK FPK+ + H+  +++ +  +F T+  F L+ D
Sbjct: 614 IKGLNIPEGDGFPTKLFFNGEECALPKHFPKKSSGHRRGISVSMSFVFATIAAFALMMD 672





Arabidopsis thaliana (taxid: 3702)
>sp|Q9T045|CBL11_ARATH COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2 Back     alignment and function description
>sp|Q8GZ17|COBL7_ARATH COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2 Back     alignment and function description
>sp|Q9FJ13|COBL9_ARATH COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIB6|COBL8_ARATH COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1 Back     alignment and function description
>sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1 Back     alignment and function description
>sp|Q9LFW3|COBL4_ARATH COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2 Back     alignment and function description
>sp|Q8L8Q7|COBL2_ARATH COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2 Back     alignment and function description
>sp|Q6Z4G8|COBL1_ORYSJ COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1 Back     alignment and function description
>sp|Q60E70|COBL3_ORYSJ COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
429326466663 COBRA-like protein [Populus tomentosa] 0.972 0.971 0.649 0.0
224115248647 predicted protein [Populus trichocarpa] 0.956 0.978 0.657 0.0
429326464664 COBRA-like protein [Populus tomentosa] 0.974 0.971 0.640 0.0
255563719649 Protein COBRA precursor, putative [Ricin 0.925 0.944 0.667 0.0
224124258664 predicted protein [Populus trichocarpa] 0.971 0.968 0.635 0.0
449470463679 PREDICTED: COBRA-like protein 10-like [C 0.963 0.939 0.643 0.0
449533534647 PREDICTED: LOW QUALITY PROTEIN: COBRA-li 0.941 0.962 0.661 0.0
225461074655 PREDICTED: COBRA-like protein 10 [Vitis 0.981 0.992 0.616 0.0
297735966652 unnamed protein product [Vitis vinifera] 0.974 0.989 0.619 0.0
449468632668 PREDICTED: COBRA-like protein 10-like [C 0.971 0.962 0.631 0.0
>gi|429326466|gb|AFZ78573.1| COBRA-like protein [Populus tomentosa] Back     alignment and taxonomy information
 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/654 (64%), Positives = 508/654 (77%), Gaps = 10/654 (1%)

Query: 13  VALILLCLRT---QICYGQDYPDAESPPAPPAPPPGQDLCNGIFLTYNFMGRELLYPHLK 69
           V L+LL L +    +CYGQ   D ESP APP   PG D CNGIFLTY+F  RE  YP +K
Sbjct: 14  VTLMLLSLPSIIFNVCYGQT-DDYESPAAPP---PGLDECNGIFLTYSFTSREKEYPKVK 69

Query: 70  NASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILVSATGATIIDGGDFPAAVGNGT 129
           NASAQAWAFK++AT+ N G  ELK W++FVGF+H+E+LVSA+GA ++DG DFP AVGNGT
Sbjct: 70  NASAQAWAFKSLATITNTGEHELKGWQMFVGFQHKEVLVSASGAIVVDGDDFPVAVGNGT 129

Query: 130 TFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPPTIPMPKSLKLVNDGYLCPAAK 189
            F GNPQ DLKTAIETAGD+ QI+AQIEI G+ FG+KPP +PMPK++KLVNDGY CP   
Sbjct: 130 IFAGNPQVDLKTAIETAGDFTQIAAQIEIAGSVFGIKPPGVPMPKNIKLVNDGYKCPKPT 189

Query: 190 NDG-SYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYDVMQAYGNNYLAQVTMENEHP 248
             G SYM  CCKKDPK K    K  KF PR+ GDL L+YDV+QAYGNNY AQVTM+N HP
Sbjct: 190 LRGKSYMRVCCKKDPKAKEEK-KRLKFLPRRYGDLSLTYDVLQAYGNNYQAQVTMDNIHP 248

Query: 249 LGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPI 308
           LGRLDHWNLTWEW N EFIS MRGA+THK+D S C+YG AGKYYK+FDFS ++NCEKKP+
Sbjct: 249 LGRLDHWNLTWEWMNGEFISTMRGAYTHKRDFSECIYGTAGKYYKDFDFSTIMNCEKKPV 308

Query: 309 ISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPM 368
           ISDLP    ND+++GKLPYCCRNG+LLP +MDESKA S+FQL V+K+PP  NRTALVPP 
Sbjct: 309 ISDLPPDRKNDSQVGKLPYCCRNGTLLPAIMDESKARSIFQLQVYKMPPFLNRTALVPPE 368

Query: 369 KWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCNITKSEIKQSSCCVS 428
           KW+I G +NP Y+CGPPIRV+PTEFPDPSGL S T AVASWQV CNIT+ + K S CCVS
Sbjct: 369 KWKIDGVVNPQYKCGPPIRVDPTEFPDPSGLDSKTYAVASWQVTCNITRPKEKLSRCCVS 428

Query: 429 FSAYYNESIIPCPTCACGCPDPEKCNPKAKAMLLPSEALLVPFSNRTNKVVAWAGLKHLP 488
           FSAYYN S IPC TCACGC + + C+  AKAMLLP E+LLVPF NRT K +AWA L    
Sbjct: 429 FSAYYNRSAIPCNTCACGCDNNKGCSQNAKAMLLPPESLLVPFDNRTEKALAWAALNKFK 488

Query: 489 IPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDTLPFEDWFLAVKMDKAFDGYENV 548
           +P P PCPDNC VSINWH+ +D+K GWTA VTLFNWD  PFEDWF A+K+DKA+ G E V
Sbjct: 489 VPNPRPCPDNCPVSINWHIDSDFKTGWTASVTLFNWDDSPFEDWFAAIKLDKAYKGLEGV 548

Query: 549 YSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRPGEPQVPGKQQSVISFLKKKTPNID 608
           YS NGT+  N  N T+  QGL GLN+L+G  NGT+PG+P+VPGKQQ+ ISF+KK+TP I+
Sbjct: 549 YSLNGTKFDNLNN-TILLQGLPGLNFLMGEVNGTKPGDPRVPGKQQTKISFIKKRTPGIN 607

Query: 609 VQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNIVLIIFITVLTFVLIQDR 662
           + RGDGFP ++ FNGEECALP   P+  A  KS    +++I + ++TF+L+ D 
Sbjct: 608 IPRGDGFPTRILFNGEECALPTQIPRSSAQQKSHFKFLIVIIMAIVTFILMSDH 661




Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115248|ref|XP_002316982.1| predicted protein [Populus trichocarpa] gi|222860047|gb|EEE97594.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|429326464|gb|AFZ78572.1| COBRA-like protein [Populus tomentosa] Back     alignment and taxonomy information
>gi|255563719|ref|XP_002522861.1| Protein COBRA precursor, putative [Ricinus communis] gi|223537945|gb|EEF39559.1| Protein COBRA precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124258|ref|XP_002319286.1| predicted protein [Populus trichocarpa] gi|222857662|gb|EEE95209.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449470463|ref|XP_004152936.1| PREDICTED: COBRA-like protein 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449533534|ref|XP_004173729.1| PREDICTED: LOW QUALITY PROTEIN: COBRA-like protein 10-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|225461074|ref|XP_002279050.1| PREDICTED: COBRA-like protein 10 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735966|emb|CBI23940.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468632|ref|XP_004152025.1| PREDICTED: COBRA-like protein 10-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query662
TAIR|locus:2085785672 COBL10 "COBRA-like protein 10 0.922 0.909 0.617 6.7e-223
TAIR|locus:2136452668 COBL11 "COBRA-like protein 11 0.977 0.968 0.563 9.2e-210
TAIR|locus:2130100661 COBL7 "AT4G16120" [Arabidopsis 0.971 0.972 0.496 2.4e-186
TAIR|locus:2155889663 SHV2 "SHAVEN 2" [Arabidopsis t 0.919 0.918 0.508 7.3e-178
TAIR|locus:2093673653 COBL8 "COBRA-like protein 8 pr 0.918 0.931 0.508 1.2e-177
TAIR|locus:2173532456 COB "AT5G60920" [Arabidopsis t 0.602 0.875 0.274 7.7e-36
TAIR|locus:2086601441 COBL2 "AT3G29810" [Arabidopsis 0.474 0.712 0.280 2.9e-29
TAIR|locus:2076507452 COBL1 "COBRA-like protein 1 pr 0.484 0.710 0.287 3.9e-27
TAIR|locus:2143151431 IRX6 "IRREGULAR XYLEM 6" [Arab 0.490 0.754 0.279 8.3e-27
TAIR|locus:2024377454 COBL6 "AT1G09790" [Arabidopsis 0.478 0.698 0.274 3.3e-22
TAIR|locus:2085785 COBL10 "COBRA-like protein 10 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2152 (762.6 bits), Expect = 6.7e-223, P = 6.7e-223
 Identities = 381/617 (61%), Positives = 474/617 (76%)

Query:    49 CNGIFLTYNFMGRELLYPHLKNASAQAWAFKAMATVVNAGSEELKAWKLFVGFRHREILV 108
             CNGIF++YNF  RE  YPH+KN +AQ+WAFK+ A +VNAG EELK W++F+GFRH+E++V
Sbjct:    58 CNGIFMSYNFGSREREYPHVKNVTAQSWAFKSTAMIVNAGREELKGWQMFIGFRHKELIV 117

Query:   109 SATGATIIDGGDFPAAVGNGTTFVGNPQADLKTAIETAGDYPQISAQIEIKGTQFGVKPP 168
             SATGAT +DG D+P    NGTTFVG+P  DLKT+IETAGD+ QISA IEI GT FGV   
Sbjct:   118 SATGATPMDG-DYPLDASNGTTFVGSPNMDLKTSIETAGDFTQISANIEITGTLFGVSKA 176

Query:   169 TIPMPKSLKLVNDGYLCPAAKNDGSYMYTCCKKDPKFKAPPVKGTKFAPRQNGDLLLSYD 228
               PMP+++KL NDG+ CPAAK  G  M+ CCK++PK K      TKFAPR+ GDL + YD
Sbjct:   177 VTPMPRTIKLTNDGWECPAAKRKGGSMHVCCKRNPKIKNKIGLKTKFAPRRYGDLNIVYD 236

Query:   229 VMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPA 288
             V+Q++ +NYLAQVT++N++PLGRLD WNLT+EW   EFI+ MRGA+THKKD S CLY  A
Sbjct:   237 VLQSFDSNYLAQVTIDNDNPLGRLDRWNLTFEWMRGEFINTMRGAYTHKKDPSECLYSKA 296

Query:   289 GKYYKEFDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVF 348
             G+YYK+ DFSQV+NC++KP ISDLP     D   GKLP+CC+NG+LLP +MD SK+ S+F
Sbjct:   297 GQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIMDPSKSRSMF 356

Query:   349 QLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVAS 408
             QL VFKLPP  NRTAL PP  W+I G LNP Y+CGPP+RV+P++FPDPSGL + T A++S
Sbjct:   357 QLQVFKLPPDLNRTALYPPQHWKIDGVLNPQYKCGPPVRVDPSQFPDPSGLLAVTYAISS 416

Query:   409 WQVVCNITKSEIKQSSCCVSFSAYYNESIIPCPTCACGCPD--PEKCNPKAKAMLLPSEA 466
             WQVVCNITK + + S CCVSFSA+YN S +PC TCACGC D   + CN  +  +LLP +A
Sbjct:   417 WQVVCNITKPKAQASRCCVSFSAFYNNSAVPCNTCACGCNDIDTDTCNANSNPLLLPPDA 476

Query:   467 LLVPFSNRTNKVVAWAGLKHLPIPKPLPCPDNCGVSINWHVSTDYKDGWTARVTLFNWDT 526
             LLVPF NRT K  AWA   H+P+PK LPCPDNCGVSINWHVSTDYK+GWTAR+T+FNW  
Sbjct:   477 LLVPFDNRTLKAKAWAKQNHMPVPKKLPCPDNCGVSINWHVSTDYKNGWTARLTVFNWRD 536

Query:   527 LPFEDWFLAVKMDKAFDGYENVYSFNGTRLPNKENKTLFFQGLEGLNYLVGLTNGTRP-G 585
               FEDWF+A+ M KA  GYENVYSFNGTR+P   N+T+ FQGL G+NYLVG  NGT P  
Sbjct:   537 FAFEDWFVAIDMGKAGPGYENVYSFNGTRVP-PSNRTVIFQGLPGMNYLVGQVNGTNPLR 595

Query:   586 EPQVPGKQQSVISFLKKKTPNIDVQRGDGFPAKVYFNGEECALPKDFPKRDAAHKSAVNI 645
             +P VPGKQQSVISF KK    +++  GDGFP K++FNGEECALPK FPK+ + H+  +++
Sbjct:   596 DPPVPGKQQSVISFTKKNIKGLNIPEGDGFPTKLFFNGEECALPKHFPKKSSGHRRGISV 655

Query:   646 VL-IIFITVLTFVLIQD 661
              +  +F T+  F L+ D
Sbjct:   656 SMSFVFATIAAFALMMD 672




GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2136452 COBL11 "COBRA-like protein 11 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130100 COBL7 "AT4G16120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155889 SHV2 "SHAVEN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093673 COBL8 "COBRA-like protein 8 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173532 COB "AT5G60920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086601 COBL2 "AT3G29810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076507 COBL1 "COBRA-like protein 1 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143151 IRX6 "IRREGULAR XYLEM 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024377 COBL6 "AT1G09790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LJU0CBL10_ARATHNo assigned EC number0.59480.98030.9657yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00130863
hypothetical protein (664 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query662
pfam04833169 pfam04833, COBRA, COBRA-like protein 1e-68
>gnl|CDD|218285 pfam04833, COBRA, COBRA-like protein Back     alignment and domain information
 Score =  221 bits (564), Expect = 1e-68
 Identities = 81/183 (44%), Positives = 109/183 (59%), Gaps = 16/183 (8%)

Query: 237 YLAQVTMENEHPLGRLDH--WNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKE 294
           Y+AQVT+EN  P   +D+  W L+WEW   E I  MRGA+T   +   C      K+YK+
Sbjct: 1   YVAQVTIENYQPYRHIDNPGWKLSWEWAKKEVIWSMRGAYTT--EQGDC-----SKFYKD 53

Query: 295 FDFSQVVNCEKKPIISDLPATYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFK 354
            DF     C+K+P I DLP     D ++     CC+NG LLP+  D +K+ S FQ++V K
Sbjct: 54  GDFPH--CCKKRPTIVDLPPGTPYDQQIAN---CCKNGVLLPRSQDPAKSVSAFQMSVGK 108

Query: 355 LPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFPDPSGLQSTTTAVASWQVVCN 414
            PP  NR  + PP  + I+G  NP Y CGP +RV PT FPDP G + TT A+A+WQV CN
Sbjct: 109 APPDTNRKTVRPPQNFTIKG-PNPGYTCGPAVRVSPTRFPDPDG-RRTTQALATWQVTCN 166

Query: 415 ITK 417
            ++
Sbjct: 167 YSQ 169


Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect. Length = 169

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 662
PF04833169 COBRA: COBRA-like protein; InterPro: IPR006918 In 100.0
PF00553101 CBM_2: Cellulose binding domain; InterPro: IPR0019 95.08
PF04833169 COBRA: COBRA-like protein; InterPro: IPR006918 In 94.59
PF00553101 CBM_2: Cellulose binding domain; InterPro: IPR0019 84.84
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) [] Back     alignment and domain information
Probab=100.00  E-value=9.1e-79  Score=578.12  Aligned_cols=167  Identities=44%  Similarity=0.851  Sum_probs=158.8

Q ss_pred             eEEEEEEecCcccCCCC--CCeeeeeecCCeeeEEecCceeeeecCCCcccCCCCcccccCCCCccccccCCCeeeeCCC
Q 040737          237 YLAQVTMENEHPLGRLD--HWNLTWEWQNNEFISQMRGAFTHKKDISGCLYGPAGKYYKEFDFSQVVNCEKKPIISDLPA  314 (662)
Q Consensus       237 Y~A~VTi~N~q~yr~Id--gW~L~W~W~k~E~IwsM~GA~~te~DqgdCs~g~ag~~yk~~dfs~ph~C~k~P~IVDLpP  314 (662)
                      |+|+|||+|||+|||||  ||+|||+|+|+||||+|+|||++|  ||||+     +||+++  ++||||+|+|+||||||
T Consensus         1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~td--qgdCs-----~~~~~~--~~ph~C~k~P~IvDLpp   71 (169)
T PF04833_consen    1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTD--QGDCS-----KFYKDG--DFPHCCKKRPTIVDLPP   71 (169)
T ss_pred             CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceecc--CCccc-----ccccCC--CCCcccCCCCEEEeCCC
Confidence            99999999999999998  599999999999999999999995  69995     577775  56789999999999999


Q ss_pred             CCcCccccCCCCccccCCeeccCccCcccceeeEEEEEeecCCCCCCCccCCCCCeEEccCCCCCcccCCCeeeCCCccc
Q 040737          315 TYFNDTKLGKLPYCCRNGSLLPKLMDESKATSVFQLTVFKLPPHDNRTALVPPMKWQIRGDLNPNYRCGPPIRVEPTEFP  394 (662)
Q Consensus       315 ~~~~d~q~g~i~nCCr~GvL~~~~qDps~S~SsFQm~Vgk~p~~~NrT~v~pP~Nftl~gp~gPgYtCGpp~~V~PT~f~  394 (662)
                      +++||+|+   +||||||||+||+|||+||+|+|||+||++||++|++.++||+||+|++| ||||+||+|++|+||+|+
T Consensus        72 ~~~~n~qi---~nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~-~pgYtCg~~~~V~pT~f~  147 (169)
T PF04833_consen   72 GTPYNQQI---GNCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGP-GPGYTCGPPKRVSPTVFP  147 (169)
T ss_pred             CCCCcccc---ccccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCC-CCCcCCCCcceeCCceee
Confidence            99999994   68999999999999999999999999999999988888999999999996 999999999999999999


Q ss_pred             CCCCCceeeEEeEEEEEeEeeec
Q 040737          395 DPSGLQSTTTAVASWQVVCNITK  417 (662)
Q Consensus       395 dpdgl~r~tqAl~TWqVtCnySq  417 (662)
                      |+|| ||+|||||||||||||||
T Consensus       148 ~~~g-~r~t~A~~TWqvtC~ysq  169 (169)
T PF04833_consen  148 DPDG-RRTTQALMTWQVTCNYSQ  169 (169)
T ss_pred             CCCC-CEEEEEEEEEeEEEEeeC
Confidence            9999 799999999999999997



The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].

>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3 Back     alignment and domain information
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) [] Back     alignment and domain information
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
3ndz_E107 Endoglucanase D; cellotriose, xylanase, carbohydra 95.32
3icg_A515 Endoglucanase D; cellulase, xylanase, carbohydrate 93.12
1exg_A110 EXO-1,4-beta-D-glycanase; cellulose binding domain 92.8
1e5b_A87 Xylanase D; hydrolase, xylan binding domain, beta- 91.91
2cwr_A103 Chitinase; chitin-binding domain, endoglucanase, h 91.03
1heh_C88 Endo-1,4-beta-xylanase D; hydrolase(xylan degradat 84.22
3ndz_E107 Endoglucanase D; cellotriose, xylanase, carbohydra 83.29
1exg_A110 EXO-1,4-beta-D-glycanase; cellulose binding domain 82.99
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E* Back     alignment and structure
Probab=95.32  E-value=0.041  Score=48.88  Aligned_cols=54  Identities=22%  Similarity=0.456  Sum_probs=46.4

Q ss_pred             eEEEEEEEEeeCCCeEEEEEEecCcccCCCCCCeeeeeecCCeeeEEecCceeee
Q 040737          223 LLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHK  277 (662)
Q Consensus       223 iTI~wDV~q~~~dgY~A~VTi~N~q~yr~IdgW~L~W~W~k~E~IwsM~GA~~te  277 (662)
                      .++.|.|.+--.+||.|.|||.|.-- ..|++|+|+|++..++-|-++..|..+.
T Consensus         3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~gWtv~~~~p~g~~it~~Wna~~s~   56 (107)
T 3ndz_E            3 VEVTYAITNSWGSGASVNVTIKNNGT-TPINGWTLKWTMPINQTITNMWSASFVA   56 (107)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEECSS-SCEESCEEEEECCTTEEEEEEESEEEEE
T ss_pred             cEEEEEEcccCCCCEEEEEEEEeCCC-CcccCcEEEEEcCCCCEEecccceEEEe
Confidence            47899998888999999999999743 3478999999999999999999997653



>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A Back     alignment and structure
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A Back     alignment and structure
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A Back     alignment and structure
>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C Back     alignment and structure
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E* Back     alignment and structure
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query662
d1exha_110 Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce 96.43
d1hehc_88 Endo-1,4-beta xylanase D, xylan binding domain, XB 93.53
d1e5ba_87 Endo-1,4-beta xylanase D, xylan binding domain, XB 91.96
d1exha_110 Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce 87.03
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD
species: Cellulomonas fimi [TaxId: 1708]
Probab=96.43  E-value=0.0025  Score=54.75  Aligned_cols=56  Identities=20%  Similarity=0.362  Sum_probs=48.4

Q ss_pred             CCCeEEEEEEEEeeCCCeEEEEEEecCcccCCCCCCeeeeeecCCeeeEEecCceeee
Q 040737          220 NGDLLLSYDVMQAYGNNYLAQVTMENEHPLGRLDHWNLTWEWQNNEFISQMRGAFTHK  277 (662)
Q Consensus       220 ~GniTI~wDV~q~~~dgY~A~VTi~N~q~yr~IdgW~L~W~W~k~E~IwsM~GA~~te  277 (662)
                      .+..++.|.+-+| .+||.|.|||.|... .-|+||+|+|++..+|-|-++.+|..+.
T Consensus         5 p~~c~v~y~~n~W-~~Gf~~~vtVtN~~~-~~~~gW~v~~~~p~g~~i~~~Wna~~~~   60 (110)
T d1exha_           5 PAGCQVLWGVNQW-NTGFTANVTVKNTSS-APVDGWTLTFSFPSGQQVTQAWSSTVTQ   60 (110)
T ss_dssp             CCCEEEECCEEEC-SSCEEEEEEEEECSS-SCEESEEEEEECSSCCEEEEEESSEEEE
T ss_pred             CcceEEEEEEccC-CCCcEEEEEEEeCCC-CcccCcEEEEECCCCCEEeeeeceEEEe
Confidence            4567899987665 789999999999877 6688999999999999999999998654



>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1e5ba_ b.2.2.1 (A:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure